Uncovering Hidden Phenotypes in NEX-Cre Mice: Behavioral and Cellular Alterations Demand Re-Evaluation of a Widely Used Transgenic Line.

Overview

1. Synthetic Biology, University of Bremen Bremen Germany
2. Neuromodulatory Circuits University of Cologne Cologne Germany

Abstract

Transgenic mouse strains are essential tools in neuroscience, enabling targeted genetic manipulations to investigate brain function and neurological diseases. The NEX‐Cre mouse line, which targets glutamatergic principal neurons in the neocortex and hippocampus by expressing Cre‐recombinase under the NEX (NeuroD6) promoter, has been widely used for conditional gene manipulation. Contrary to previous reports suggesting no behavioral and histological abnormalities in NEX‐Cre mice, our study reveals distinct behavioral and cellular phenotypes. Behavioral analyses indicate reduced anxiety‐like behavior, altered reward‐related behavior, and increased locomotor activity in NEX (Cre/Cre) mice. Additionally, Support Vector Machine (SVM) analysis uncovered subtle strain‐specific and genotype‐specific behavioral traits across all NEX‐Cre genotypes relative to the commonly used C57BL/6J mouse strain. While overt behavioral abnormalities were most prominent in NEX (Cre/Cre) mice, SVM‐based analysis revealed subtle genotype‐ and strain‐specific behavioral signatures across NEX‐Cre genotypes. This underlines the importance of using littermate controls rather than independently maintained or purchased C57BL/6J animals when interpreting genotype‐related effects. Histological analyses of Golgi‐Cox‐stained brain slices revealed alterations in dendritic spine density across key brain regions, including the caudate putamen, hippocampal CA1, nucleus accumbens core region, lateral septum, and medial prefrontal cortex. These findings highlight significant inter‐ and intra‐strain variability, emphasizing the importance of careful characterization of transgenic models and the need for appropriate control groups and experimental designs to ensure the reliability and validity of studies utilizing Cre‐Driver lines.

Reproduced under the paper's license (CC BY), from the paper cited above.

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Data

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Data Availability Statement

This study did not generate new unique reagents. A version of this manuscript was posted on bioRxiv; 21/05/2025; https://doi.org/10.1101/2025.05.21.655260. Data reported in this paper and the utilized code for NEX‐Cre classification‐ can be found at [https://github.com/masseck]. Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.

Reproduced under the paper's license (CC BY), from the paper cited above.

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Version 1, 30 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 2 authors, 4 keywords, 10 MeSH terms, 38 references, 5 RRIDs.

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This paper

Renken, K., & Masseck, O. A. (2026). Uncovering Hidden Phenotypes in NEX-Cre Mice: Behavioral and Cellular Alterations Demand Re-Evaluation of a Widely Used Transgenic Line. Journal of neurochemistry, 170(3), e70401. https://doi.org/10.1111/jnc.70401

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