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Machine-learning classification of motor unit types in the adult mouse.

Overview

Authors: María de Lourdes Martínez‐Silva1,2, Reuben M Ahorklo3, Emily J Reedich1,4, Rebecca D Imhoff‐Manuel1,4, Natallia Katenka3, Marin Manuel1,4
  1. Department of Biomedical and Pharmaceutical Sciences, College of Pharmacy, University of Rhode Island, Kingston, RI, USA
  2. Department of Physiology, Biophysics and Neurosciences, Center for Research and Advanced Studies (Cinvestav) of the National Polytechnic Institute, Mexico City, Mexico
  3. Department of Computer Science and Statistics, University of Rhode Island, Kingston, RI, USA
  4. George and Anne Ryan Institute for Neuroscience, University of Rhode Island, Kingston, RI, USA
Journal: The Journal of physiology, volume 604, issue 10, pages 3984-4008
Dates: received 20 November 2025; accepted 18 March 2026; published online 9 April 2026; in print 15 May 2026
Type: Research article · Language: English
License: CC BY-NC
Identifiers: DOI 10.1113/jp290593 · PMID 41955226 · PMCID PMC13178532 · OpenAlex W4416407185
Open access: hybrid, a free copy (OpenAlex)
Status: code verified (how the code is found and verified)
Categories: extracellular electrophysiology (units, LFP) (modality), mouse (organism)
Methods: Spectral & time-frequency, Connectivity, Statistics, Smoothing, state filtering, decompositions, Machine learning, Single-unit activity, calcium imaging
Keywords: classifier, in vivo electrophysiology, motoneuron, multinomial logistic regression, principal component analysis (PCA), spinal cord
MeSH: Machine Learning*, Motor Neurons*, Action Potentials, Animals, Classification Algorithms, Clustering Algorithms, Male, Mice, Mice, Inbred C57BL, Muscle Contraction, Muscle Fatigue, Muscle, Skeletal (* major topic)
Topic: Muscle activation and electromyography studies (Biomedical Engineering, Engineering), according to OpenAlex
Funding: National Science Foundation; NINDS NIH HHS (R01 NS110953); NIDA NIH HHS (DP2 DA046856); NIH
Citations: cited by 3 papers (Europe PMC); 84 references in the paper

Abstract

Abstract: Motor unit diversity arises from differences in the contractile properties of muscle fibres and the intrinsic electrical properties of their motoneurons. In mice, however, this relationship has not been quantitatively defined, and conventional classification often relies on subjective thresholds. Here, we combine in vivo intracellular recordings with supervised and unsupervised machine‐learning methods to test whether motoneuron electrophysiology can predict the physiological identity of mouse motor units. Unbiased clustering identified four groups corresponding to slow (S), fast fatigue‐resistant (FR), intermediate (FI) and fast fatigable (FF) types. A multinomial logistic regression model performed well, with most errors occurring between FI and FF types, which showed substantial overlap. Reducing the task to three classes improved accuracy. Feature selection revealed that four electrophysiological properties (input conductance, rheobase, afterhyperpolarization duration and maximal frequency) were sufficient for high predictive performance. Overall, this study provides a quantitative description of mouse motor unit properties and a framework for incorporating motor unit diversity into future investigations of neuromuscular physiology and disease.

Key points: Motor units are traditionally classified as slow (S), fast fatigue‐resistant (FR), fast intermediate (FI) or fast fatigable (FF) based on a handful of contractile properties, but in mice this classification has relied largely on subjective thresholds.

We used unsupervised clustering of 40 contractile variables recorded in vivo to define motor unit types objectively in the adult mouse triceps surae.

Motoneuron electrophysiological properties, including input conductance, rheobase, afterhyperpolarization duration and firing frequency, systematically varied across identified motor unit types.

A multinomial logistic regression model predicted motor unit type from motoneuron electrical properties with good accuracy, particularly for slow and fast fatigue‐resistant units.

These results establish quantitative criteria linking motoneuron excitability to muscle contractile phenotype in mice, providing a framework for studying motor unit diversity in health and neuromuscular disease.

Reproduced under the paper's license (CC BY-NC), from the paper cited above.

Code

No file of the authors' code could be read here: it is described below, and read at its source.

Zenodo 18896999

License: GPL-3.0
State: the link answers, verified on 29 September 2026
Evidence: files inventoried
Languages: Jupyter (1)
Size: 75 files, 1 script
Software Heritage: not checked
Found in: “Data availability statement”
Holds: environment (environment.yaml), 1 notebook
Not found: README, license file, CITATION.cff, tests, continuous integration, documentation
Availability: 1 check, the latest on 29 September 2026: the link answers (HTTP 200)
  • 29 September 2026: the link answers (HTTP 200)

The paper's code and data availability statement is in the Data section.

Tracing map

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Data

No dataset and no data link were found in the paper.

Data availability statement

All analysis scripts, data‐preprocessing pipelines, and trained classifier models are available at https://doi.org/10.5281/zenodo.18896999.

Reproduced under the paper's license (CC BY-NC), from the paper cited above.

Versions

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Version 1, 29 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 6 authors, 6 keywords, 12 MeSH terms, 4 funders, 75 references.

Cite

This paper

Martínez‐Silva, M. d. L., Ahorklo, R. M., Reedich, E. J., Imhoff‐Manuel, R. D., Katenka, N., & Manuel, M. (2026). Machine-learning classification of motor unit types in the adult mouse. The Journal of physiology, 604(10), 3984-4008. https://doi.org/10.1113/jp290593

BibTeX

@article{martinezsilva2026machine,
author = {Martínez‐Silva, María de Lourdes and Ahorklo, Reuben M and Reedich, Emily J and Imhoff‐Manuel, Rebecca D and Katenka, Natallia and Manuel, Marin},
title = {{Machine-learning classification of motor unit types in the adult mouse}},
journal = {The Journal of physiology},
year = {2026},
month = apr,
volume = {604},
number = {10},
pages = {3984--4008},
publisher = {Wiley},
issn = {0022-3751},
doi = {10.1113/jp290593},
url = {https://doi.org/10.1113/jp290593},
pmid = {41955226},
pmcid = {PMC13178532}
}

RIS

TY - JOUR
AU - Martínez‐Silva, María de Lourdes
AU - Ahorklo, Reuben M
AU - Reedich, Emily J
AU - Imhoff‐Manuel, Rebecca D
AU - Katenka, Natallia
AU - Manuel, Marin
TI - Machine-learning classification of motor unit types in the adult mouse
T2 - The Journal of physiology
J2 - J Physiol
PY - 2026
DA - 2026/04/09
VL - 604
IS - 10
SP - 3984
EP - 4008
SN - 0022-3751
PB - Wiley
DO - 10.1113/jp290593
UR - https://doi.org/10.1113/jp290593
LA - en
ER -

CSL-JSON

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