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APOE ε4-associated hippocampal atrophy trajectories across the Alzheimer's disease continuum: a systematic review, meta-analysis, and longitudinal validation.

Code ↔ Paper

4 matches between paragraphs of the paper and lines of its authors' code, computed by the harvester (lexical-v1). Click a colored paragraph or line to see its counterpart.

The 4 matches
  1. [1] § Methods › Meta-analysis strategy ↔ meta/meta.R, lines 120–261 · score 0.65 · bias corrected, meta regression, trim, Baujat, multiverse, fill
  2. [2] § Methods › Statistical models ↔ ADNI/adni_analysis.py, lines 67–95 · score 0.62 · field strength, APOE4 dosage, ADNI model, baseline diagnosis, ICV, Sex
  3. [3] § Results › Establishing the baseline effect and sources of heterogeneity ↔ meta/meta.R, lines 120–261 · score 0.59 · bias corrected, meta regressions, trim, female, fill, uncorrected
  4. [4] § Methods › Statistical models ↔ ADNI/adni_analysis.py, lines 133–170 · score 0.52 · field strength, baseline diagnosis interaction, CN, ICV, sex, age

Paper

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The authors' code

R · 505 lines · 30 KB · no license · 2 matches

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It can be read at the source: meta/meta.R.

Overview

Authors: Minnuo Cai1,2, Hang Lei1, Yuetong Zhang1, Jiaxiang Zou1, Wanjing Cao1, Yiquan Wang1,2,3, Kai Wei1
ORCID iDs: Yiquan Wang, Kai Wei
  1. Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi, Xinjiang, China
  2. Shenzhen X-Institute, Shenzhen, China
  3. College of Mathematics and System Science, Xinjiang University, Urumqi, Xinjiang, China
Institutions: Xinjiang University (China)
Journal: Frontiers in aging neuroscience, volume 18, article 1847611
Dates: received 4 April 2026; accepted 11 June 2026; published online 1 July 2026
Type: Systematic review · Language: English
License: CC BY
Identifiers: DOI 10.3389/fnagi.2026.1847611 · PMID 42459526 · PMCID PMC13369312 · OpenAlex W4417258294
Open access: gold, a free copy (OpenAlex)
Status: code verified
Categories: structural MRI / diffusion (modality), human (organism), Alzheimer's / dementia (population)
Methods: Statistics, Preprocessing
Keywords: AD spectrum, amyloid interaction, APOE-ε4, hippocampal volume, systematic review
Topic: Alzheimer's disease research and treatments (Physiology, Medicine), according to OpenAlex
Funding: NIA NIH HHS (U19 AG024904, U24 AG072122)
Citations: cited by 1 paper (Europe PMC); 73 references in the paper

Abstract

Background: Predicting patient-specific neurodegenerative trajectories is essential for targeted interventions in Alzheimer's disease. Although the APOE-ε4 allele is the predominant genetic risk factor for hippocampal atrophy, whether its structural impact reflects a static developmental phenotype or an accelerated neurodegenerative process conditional on amyloid pathology remains unresolved.

Objectives: To quantify the effect of APOE-ε4 on hippocampal volume via cross-sectional meta-analysis, and to validate the gene-dose effect through independent longitudinal modeling in two cohorts.

Eligibility criteria: Original observational neuroimaging studies reporting hippocampal volume stratified by APOE genotype in human participants across the Alzheimer's disease continuum.

Information sources: PubMed, Embase, Web of Science, and Cochrane Library were searched from inception to August 2025.

Risk of bias: Methodological quality was assessed using the Newcastle–Ottawa Scale (NOS) adapted for cross-sectional studies.

Included studies and synthesis of results: The meta-analysis included 18 studies (N = 4, 311) and indicated reduced hippocampal volume in carriers (ICV-corrected stratum: SMD = −0.41, 95% CI [−0.67, −0.16], p = 0.004; I2 = 74.0%), with the effect absent in uncorrected analyses. Longitudinal gene-dose models, run independently in the post-QC NACC LMM sample (N = 3, 239; imaging extraction N = 3, 248) and ADNI (N = 1, 150) cohorts and combined via fixed-effect meta-analysis, demonstrated a dose-dependent acceleration of hippocampal atrophy: homozygotes exhibited a pooled additional volume loss of −58.25 mm3/year (95% CI [−89.26, −27.23], p = 2.33 × 10−4; I2 = 0%) and heterozygotes −34.32 mm3/year (95% CI [−52.31, −16.32], p = 1.85 × 10−4) relative to non-carriers.

Limitations: Biomarker-stratified analyses used baseline-only CSF measurements subject to time-varying confounding and should be interpreted as exploratory. Moderate between-cohort heterogeneity was observed for the heterozygote effect (I2 = 63.0%).

Conclusions and implications: These findings provide two-cohort evidence for a dose-dependent APOE-ε4 effect on hippocampal atrophy rates. Exploratory biomarker-stratified analyses in ADNI suggest this acceleration may be conditional on amyloid-β positivity, a hypothesis requiring validation with time-varying causal models.

Systematic review registration: https://www.crd.york.ac.uk/PROSPERO/view/CRD420251243460, PROSPERO: CRD420251243460.

Reproduced under the paper's license (CC BY), from the paper cited above.

Repository

Its files are read in the Code ↔ Paper reader above, with 4 matches between paragraphs and lines of code.

wyqmath/admeta

License: none: the authors keep all their rights
State: the link answers, verified on 27 September 2026
Evidence: files inventoried
Commit: 09b915a36aec7144152e2946681423fc39d8d70e, 22 May 2026
Languages: Python (2), R (1)
Size: 4 files, 3 scripts
Software Heritage: not archived
Found in: “Data availability statement”
Holds: README
Not found: license file, CITATION.cff, environment file, tests, continuous integration, documentation
Tools: Matplotlib (2 files), NumPy (2 files), pandas (2 files), SciPy (2 files), seaborn (2 files), statsmodels (2 files), data.table (1 file), tidyverse (1 file)
Availability: 1 check, the latest on 27 September 2026: the link answers
  • 27 September 2026: the link answers
4 files, not copied: shown from their source

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The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 3 scripts, each with its path and the digest of its content;
  • 4 matches between paragraphs of the paper and lines of the code (method lexical-v1);
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

No dataset and no data link were found in the paper.

Data availability statement

The code used for the meta-analysis and longitudinal modeling is publicly available in the GitHub repository: https://github.com/wyqmath/admeta.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

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Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, pages, dates, 7 authors, 5 keywords, 1 funder, 72 references.

Cite

This paper

Cai, M., Lei, H., Zhang, Y., Zou, J., Cao, W., Wang, Y., & Wei, K. (2026). APOE ε4-associated hippocampal atrophy trajectories across the Alzheimer's disease continuum: a systematic review, meta-analysis, and longitudinal validation. Frontiers in aging neuroscience, 18, 1847611. https://doi.org/10.3389/fnagi.2026.1847611

BibTeX

@article{cai2026apoe,
author = {Cai, Minnuo and Lei, Hang and Zhang, Yuetong and Zou, Jiaxiang and Cao, Wanjing and Wang, Yiquan and Wei, Kai},
title = {{APOE ε4-associated hippocampal atrophy trajectories across the Alzheimer's disease continuum: a systematic review, meta-analysis, and longitudinal validation}},
journal = {Frontiers in aging neuroscience},
year = {2026},
month = jul,
volume = {18},
pages = {1847611},
publisher = {Frontiers Media SA},
issn = {1663-4365},
doi = {10.3389/fnagi.2026.1847611},
url = {https://doi.org/10.3389/fnagi.2026.1847611},
pmid = {42459526},
pmcid = {PMC13369312}
}

RIS

TY - JOUR
AU - Cai, Minnuo
AU - Lei, Hang
AU - Zhang, Yuetong
AU - Zou, Jiaxiang
AU - Cao, Wanjing
AU - Wang, Yiquan
AU - Wei, Kai
TI - APOE ε4-associated hippocampal atrophy trajectories across the Alzheimer's disease continuum: a systematic review, meta-analysis, and longitudinal validation
T2 - Frontiers in aging neuroscience
J2 - Front Aging Neurosci
PY - 2026
DA - 2026/07/01
VL - 18
SP - 1847611
SN - 1663-4365
PB - Frontiers Media SA
DO - 10.3389/fnagi.2026.1847611
UR - https://doi.org/10.3389/fnagi.2026.1847611
LA - en
ER -

CSL-JSON

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