Preoperative Brain Tumor Imaging: Models and Software for Segmentation and Standardized Reporting.

This page is built on request from the registry's record of the paper. The 6,000 most recent papers have a fuller page, built ahead of time, with the Code ↔ Paper reader, the tracing map and its validation, the record's versions, how to cite it and similar papers. This paper is older: its record, its code, its data and the requests about it are below.

Code

173 files of its code read; 15 matches between paragraphs and code. The Code ↔ Paper reader is built for the 6,000 most recent papers only: this paper's code is read at its source.

dbouget/Raidionics

License: BSD-2-Clause

State: the link answers

Copies: kept by the registry: this license allows it

dbouget/validation_metrics_computation

License: BSD-2-Clause

State: the link answers

Copies: kept by the registry: this license allows it

Tools found in the code: h5py, Matplotlib, NiBabel, NumPy, pandas, Pillow, Plotly, scikit-image, scikit-learn, SciPy, seaborn, SimpleITK, statsmodels

OverviewAuthors: David Bouget, André Pedersen, Asgeir S. Jakola, Vasileios Kavouridis, Kyrre E. Emblem, Roelant S. Eijgelaar, Ivar Kommers, Hilko Ardon, Frederik Barkhof, Lorenzo Bello, Mitchel S. Berger, Marco Conti Nibali, Julia Furtner, Shawn Hervey-Jumper, Albert J. S. Idema, Barbara Kiesel, Alfred Kloet, Emmanuel Mandonnet, Domenique M. J. Müller, Pierre A. Robeand 10 other authorsMarco Rossi, Tommaso Sciortino, Wimar A. Van den Brink, Michiel Wagemakers, Georg Widhalm, Marnix G. Witte, Aeilko H. Zwinderman, Philip C. De Witt Hamer, Ole Solheim, Ingerid Reinertsen
Journal: Frontiers in neurology
Published: 27 July 2022
Type: Research article
Status: code verified (how the code is found and verified)
DOI: 10.3389/fneur.2022.932219
License: CC BY
Institutions: SINTEF (Norway), SINTEF Digital (Norway), Norwegian University of Science and Technology (Norway), St Olav's University Hospital (Norway), Sahlgrenska University Hospital (Sweden), University of Gothenburg (Sweden), Oslo University Hospital (Norway), Amsterdam University Medical Centers (Netherlands), Cancer Center Amsterdam (Netherlands), Vrije Universiteit Amsterdam (Netherlands), Elisabeth-TweeSteden Ziekenhuis (Netherlands), University College London (United Kingdom), University of Milan (Italy), University of California, San Francisco (United States), Medical University of Vienna (Austria), Noordwest Ziekenhuisgroep (Netherlands), Medisch Centrum Haaglanden (Netherlands), Stichting Haaglanden Medisch Centrum (Netherlands), Hôpital Lariboisière (France), University Medical Center Utrecht (Netherlands), Isala (Netherlands), University Medical Center Groningen (Netherlands), University of Groningen (Netherlands), The Netherlands Cancer Institute (Netherlands), University of Amsterdam (Netherlands)
Categories: structural MRI / diffusion (modality), human (organism), other condition (population), methods / tools (subfield)

Data

No dataset cited, and no data link found.

Contribute

The authors of this paper can claim it and correct its record, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to the registry's own machine, which answers it; your account page follows them.

Sign in with ORCID to claim this paper as one of its authors or correct its record: when the paper's metadata lists your ORCID iD, you are recognized at once. Maintainers of its code: sign in with GitHub, then claim the repository on your account page.

Add the badge to the code's README

Authors and maintainers of this paper's code: the badge says what OSCR knows of the paper and links the code to this page. Paste one of these under the README's title. Keep the two marks around it: they let the badge be replaced in place, never added twice. Nothing is changed for you.

Markdown

<!-- oscr-badge:start -->
[![OSCR](https://openscicode.org/badge/doi/10.3389/fneur.2022.932219.svg)](https://openscicode.org/badge/doi/10.3389/fneur.2022.932219)
<!-- oscr-badge:end -->

reStructuredText

.. oscr-badge:start

.. image:: https://openscicode.org/badge/doi/10.3389/fneur.2022.932219.svg
   :target: https://openscicode.org/badge/doi/10.3389/fneur.2022.932219
   :alt: OSCR

.. oscr-badge:end

HTML

<!-- oscr-badge:start -->
<a href="https://openscicode.org/badge/doi/10.3389/fneur.2022.932219"><img src="https://openscicode.org/badge/doi/10.3389/fneur.2022.932219.svg" alt="OSCR"></a>
<!-- oscr-badge:end -->

On GitHub, open the README, choose Edit (the pencil), paste the snippet under the title, then "Commit changes".

Or let it be kept for you, once you choose it: oscr badge --write from the command line, or the GitHub Action in your repository's workflows. Every other form is on the badge page.

Request its removal

To ask for this record, the copies of its authors' scripts or its tracing map to be removed, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).