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Integrated WGCNA and Network Pharmacology Explore the Potential Mechanisms of D-Limonene in Alleviating Traumatic Brain Injury.

Overview

Authors: Hongyan Jiang1, Xinyuan Luo1, Hengxi Li1, Zhiying Guo1, Xiao Yan1, Ping Li1
ORCID iDs: Hengxi Li, Ping Li
  1. Department of Anatomy and Histology & Embryology, Faculty of Basic Medical Science, Kunming Medical University, Kunming 650500, China; (H.J.); (X.L.); (H.L.); (Z.G.); (X.Y.)
Institutions: Kunming Medical University (China)
Journal: International journal of molecular sciences, volume 27, issue 14, article 6143
Dates: received 1 June 2026; accepted 7 July 2026; published online 9 July 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.3390/ijms27146143 · PMID 42511490 · PMCID PMC13409895 · OpenAlex W7167808372
Open access: gold, a free copy (OpenAlex)
Status: code on request
Categories: rat (organism), traumatic brain injury (population), cellular / molecular (subfield)
Methods: Statistics, Machine learning, Spectral & time-frequency
Keywords: D-limonene, blood–brain barrier, network pharmacology, traumatic brain injury, neuroinflammation
MeSH: Brain Injuries, Traumatic*, Gene Regulatory Networks*, Limonene*, Network Pharmacology*, Neuroprotective Agents*, Animals, Anti-Inflammatory Agents, Male, Molecular Docking Simulation, NF-kappa B, p38 Mitogen-Activated Protein Kinases, Phosphatidylinositol 3-Kinases, Proto-Oncogene Proteins c-akt, Rats, Signal Transduction (* major topic)
Topic: Traumatic Brain Injury and Neurovascular Disturbances (Neurology, Medicine), according to OpenAlex
Funding: National Natural Science Foundation of China (82560263); Yunnan Fundamental Research Projects (202501AS070026); Key Research and Development Program of Yunnan Province (202403AC100010); Kunming Medical University (PX-425764)
Citations: cited by 1 paper (Europe PMC); 76 references in the paper

Abstract

D-limonene (D-Lim) is a monocyclic monoterpene and the principal component of citrus essential oils; however, the potential mechanisms underlying its neuroprotective effects in traumatic brain injury (TBI) remain incompletely elucidated. By integrating network pharmacology, weighted gene co-expression network analysis (WGCNA), molecular docking, and experimental validation, this study systematically investigated the potential mechanisms through which D-Lim exerts neuroprotective activity. Database analyses and in vivo experiments showed that the anti-inflammatory and neuroprotective effects produced by D-Lim may be related to the p38 MAPK/NF-κB signaling axis and activation of the PI3K/AKT signaling pathway. Molecular docking and RT-PCR experiments indicated interactions between D-Lim and potential target proteins, including Icam1, Kdr, and Dpp4. HE and Nissl staining demonstrated that D-Lim ameliorated TBI-induced neuronal injury. Moreover, D-Lim had no observable effects on major organs and showed no peripheral toxicity, suggesting its favorable applicability for TBI intervention. Following early intervention with D-Lim, the inflammatory response induced by TBI was attenuated, which may be associated with the activation or modulation of the p38 MAPK, PI3K/AKT, and NF-κB p65 signaling pathways. These results indicate a potential acute protective role for D-Lim under prophylactic or early-intervention conditions, provide insights into TBI intervention, and establish a theoretical basis for potential preventive strategies.

Reproduced under the paper's license (CC BY), from the paper cited above.

Code

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Data Availability Statement

All the data processing and analysis codes can be provided by the corresponding author upon reasonable request.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

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Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 6 authors, 5 keywords, 15 MeSH terms, 4 funders, 76 references.

Cite

This paper

Jiang, H., Luo, X., Li, H., Guo, Z., Yan, X., & Li, P. (2026). Integrated WGCNA and Network Pharmacology Explore the Potential Mechanisms of D-Limonene in Alleviating Traumatic Brain Injury. International journal of molecular sciences, 27(14), 6143. https://doi.org/10.3390/ijms27146143

BibTeX

@article{jiang2026integrated,
author = {Jiang, Hongyan and Luo, Xinyuan and Li, Hengxi and Guo, Zhiying and Yan, Xiao and Li, Ping},
title = {{Integrated WGCNA and Network Pharmacology Explore the Potential Mechanisms of D-Limonene in Alleviating Traumatic Brain Injury}},
journal = {International journal of molecular sciences},
year = {2026},
month = jul,
volume = {27},
number = {14},
pages = {6143},
publisher = {Multidisciplinary Digital Publishing Institute (MDPI)},
issn = {1422-0067},
doi = {10.3390/ijms27146143},
url = {https://doi.org/10.3390/ijms27146143},
pmid = {42511490},
pmcid = {PMC13409895}
}

RIS

TY - JOUR
AU - Jiang, Hongyan
AU - Luo, Xinyuan
AU - Li, Hengxi
AU - Guo, Zhiying
AU - Yan, Xiao
AU - Li, Ping
TI - Integrated WGCNA and Network Pharmacology Explore the Potential Mechanisms of D-Limonene in Alleviating Traumatic Brain Injury
T2 - International journal of molecular sciences
J2 - Int J Mol Sci
PY - 2026
DA - 2026/07/09
VL - 27
IS - 14
SP - 6143
SN - 1422-0067
PB - Multidisciplinary Digital Publishing Institute (MDPI)
DO - 10.3390/ijms27146143
UR - https://doi.org/10.3390/ijms27146143
LA - en
ER -

CSL-JSON

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"container-title": "International journal of molecular sciences",
"author": [
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"language": "en",
"issued": {
"date-parts": [
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}

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