From Genes to Neurochemistry: Excitation and Inhibition Mechanisms of Sensory Differences in Autism
The 3 matches
- [1] § Materials and Methods › Vibrotactile psychophysics ↔ R/BATD_analyze.R, lines 233–286 · score 0.93 · DDTdown, DDTup, static detection threshold, ADTssa, dynamic detection threshold, simultaneous amplitude discrimination
- [2] § Materials and Methods › Vibrotactile psychophysics ↔ R/BATD_extract_OF.R, lines 140–194 · score 0.73 · static detection threshold, dynamic detection threshold, simultaneous amplitude discrimination, 350 um, judgement, temporal
- [3] § Materials and Methods › Vibrotactile psychophysics ↔ R/BATD_analyze.R, lines 233–286 · score 0.53 · ADTssa, DDT, SDT, SQAD, adaptation, thresholds
Paper
Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC
The paper is loaded when this pane is shown.
The authors' code
R · 286 lines · 15 KB · no license · 2 matches
BATD_analyze.R at commit a8def81, no license · at the source
Overview
15 affiliations
- Department of Forensic and Neurodevelopmental Sciences, Institute of Psychiatry, Psychology, and Neuroscience, King’s College London, London, UK
- MRC Centre for Neurodevelopmental Disorders, King’s College London, London, UK
- Department of Human genetics, Radboud University Medical Center, Nijmegen, Netherlands
- Autism Research Centre, Department of Psychiatry, University of Cambridge, Cambridge, UK
- Radboud University Nijmegen Medical Center, Department of Cognitive Neuroscience, Donders Institute for Brain, Cognition and Behaviour, Nijmegen, Netherlands
- Human Genetics and Cognitive Functions Unit, Institut Pasteur, University de Paris, France
- Development and Neurodiversity Lab, Department of Psychology, Uppsala University, Uppsala, Sweden
- Center of Neurodevelopmental Disorders (KIND), Centre for Psychiatry Research, Department of Women’s and Children’s Health, Karolinska Institutet & Stockholm Health Care Services, Region Stockholm, Stockholm, Sweden
- Central Institute of Mental Health, Department of Child and Adolescent Psychiatry and Psychotherapy, Mannheim, Germany
- German Center for Mental Health (DZPG), partner site Mannheim-Heidelberg-Ulm, Germany
- Department of Clinical Psychology of Childhood and Adolescence, Institute of Psychology, Friedrich Schiller University Jena, Semmelweisstraße 12, Jena, 07743, Germany
- Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, 601 North Caroline Street, Baltimore, MD, 21287, United States
- F.M. Kirby Research Centre for Functional Brain Imaging, Kennedy Krieger Institute, 707 North Broadway, Baltimore, MD, 21205, United States
- Department of Psychology, Institute of Psychiatry, Psychology, and Neuroscience, King’s College London, London, UK
- Research Department of Early life Imaging, School of Biomedical Engineering and Imaging Sciences, London, UK
Abstract
The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.
Repository
Its files are read in the Code ↔ Paper reader above, with 3 matches between paragraphs and lines of code.
HeJasonL/BATD
a8def8144aff27d30ab5010ad98b1facb09cdb0d, 13 February 2026Availability: 1 check, the latest on 27 September 2026: the link answers
- 27 September 2026: the link answers
27 files, not copied: shown from their source
OSCR keeps no copy of these files: this repository has no license that allows it. The reader above shows each one from its source, fetched by your browser at commit a8def81, when its fingerprint is the one OSCR verified. How this works.
- R/
BATD.R — R, 12 lines, shown from its source - R/
BATD_analyze.R — R, 286 lines, 2 matches, shown from its source - R/
BATD_analyze_all.R — R, 70 lines, shown from its source - R/
BATD_extract.R — R, 131 lines, shown from its source - R/
BATD_extract_NF.R — R, 384 lines, shown from its source - R/
BATD_extract_OF.R — R, 250 lines, 1 match, shown from its source - R/
BATD_plot.R — R, 172 lines, shown from its source - R/
BATD_plot_all.R — R, 78 lines, shown from its source - R/
extract/ — R, 131 lines, shown from its sourceextract.R - R/
extract/ — R, 388 lines, shown from its sourceextract_nf.R - R/
extract/ — R, 254 lines, shown from its sourceextract_of.R - R/
extract/ — R, 166 lines, shown from its sourcehelpers/ common_extraction.R - R/
extract/ — R, 136 lines, shown from its sourcehelpers/ format_detection.R - R/
format_detection.R — R, 136 lines, shown from its source - R/
load_config.R — R, 194 lines, shown from its source - R/
plot/ — R, 172 lines, shown from its sourceplot.R - R/
plot/ — R, 78 lines, shown from its sourceplot_all.R - R/
utils/ — R, 18 lines, shown from its sourceoperators.R - tests/
testthat.R — R, 5 lines, shown from its source - tests/
testthat/ — R, 49 lines, shown from its sourcetest-backward-compatibil ity.R - tests/
testthat/ — R, 80 lines, shown from its sourcetest-batd-extract-wrappe r.R - tests/
testthat/ — R, 58 lines, shown from its sourcetest-format-detection.R - tests/
testthat/ — R, 66 lines, shown from its sourcetest-normalize-demograph ics.R - tests/
testthat/ — R, 53 lines, shown from its sourcetest-operators.R - tests/
testthat/ — R, 119 lines, shown from its sourcetest-shared-helpers.R - tests/
testthat/ — R, 157 lines, shown from its sourcetest_config.R - README.md — Text, 337 lines, shown from its source
Tracing map
Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.
What the map holds:
- 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
- 26 scripts, each with its path and the digest of its content;
- 3 matches between paragraphs of the paper and lines of the code (method lexical-v1);
- neither the text of the paper nor the code itself.
Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.
Data
No dataset and no data link were found in the paper.
Data availability statement
The paper has a data availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:
- no repository, dataset or request procedure was recognized in it
Read it in the paper: doi.org/10.64898/2026.07.14.26358047.
Versions
The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.
Version 2, 28 September 2026
- Authors: added Nicolaas A. Puts (0000-0003-1024-1927); removed Nicolaas A. Puts
- Funding: added Autism Speaks; European Federation of Pharmaceutical Industries and Associations; Simons Foundation Autism Research Initiative; European Commission
Version 1, 27 September 2026: the first record
Recorded: type, journal, dates, 22 authors, 125 references.
Cite
This paper
Thomson, A. R., Hollestein, V., Arenella, M., Powell, H., He, J., Oakley, B., Loth, E., Holt, R., Buitelaar, J. K., Colomar, L., Forde, N. J., Bourgeron, T., Falck-Ytter, T., Bussu, G., Banaschweski, T., Aggensteiner, P.-M., Edden, R., Charman, T., Pretzsch, C., . . . Puts, N. A. (2026). From Genes to Neurochemistry: Excitation and Inhibition Mechanisms of Sensory Differences in Autism. medRxiv (preprint). https://
BibTeX
@article{thomson2026gene
author = {Thomson, Alice R. and Hollestein, Viola and Arenella, Martina and Powell, Helen and He, Jason and Oakley, Beth and Loth, Eva and Holt, Rosemary and Buitelaar, Jan K. and Colomar, Laura and Forde, Natalie J. and Bourgeron, Thomas and Falck-Ytter, Terje and Bussu, Giorgia and Banaschweski, Tobias and Aggensteiner, Pascal-M and Edden, Richard and Charman, Tony and Pretzsch, Charlotte and Murphy, Declan and Arichi, Tomoki and Puts, Nicolaas A.},
title = {{From Genes to Neurochemistry: Excitation and Inhibition Mechanisms of Sensory Differences in Autism}},
journal = {medRxiv (preprint)},
year = {2026},
month = jul,
publisher = {medRxiv},
doi = {10.64898/
url = {https://
}
RIS
TY - JOUR
AU - Thomson, Alice R.
AU - Hollestein, Viola
AU - Arenella, Martina
AU - Powell, Helen
AU - He, Jason
AU - Oakley, Beth
AU - Loth, Eva
AU - Holt, Rosemary
AU - Buitelaar, Jan K.
AU - Colomar, Laura
AU - Forde, Natalie J.
AU - Bourgeron, Thomas
AU - Falck-Ytter, Terje
AU - Bussu, Giorgia
AU - Banaschweski, Tobias
AU - Aggensteiner, Pascal-M
AU - Edden, Richard
AU - Charman, Tony
AU - Pretzsch, Charlotte
AU - Murphy, Declan
AU - Arichi, Tomoki
AU - Puts, Nicolaas A.
TI - From Genes to Neurochemistry: Excitation and Inhibition Mechanisms of Sensory Differences in Autism
T2 - medRxiv (preprint)
J2 - medRxiv
PY - 2026
DA - 2026/
PB - medRxiv
DO - 10.64898/
UR - https://
ER -
CSL-JSON
{
"id": "10.64898/
"type": "article",
"title": "From Genes to Neurochemistry: Excitation and Inhibition Mechanisms of Sensory Differences in Autism",
"container-title": "medRxiv (preprint)",
"author": [
{
"family": "Thomson",
"given": "Alice R."
},
{
"family": "Hollestein",
"given": "Viola"
},
{
"family": "Arenella",
"given": "Martina"
},
{
"family": "Powell",
"given": "Helen"
},
{
"family": "He",
"given": "Jason"
},
{
"family": "Oakley",
"given": "Beth"
},
{
"family": "Loth",
"given": "Eva"
},
{
"family": "Holt",
"given": "Rosemary"
},
{
"family": "Buitelaar",
"given": "Jan K."
},
{
"family": "Colomar",
"given": "Laura"
},
{
"family": "Forde",
"given": "Natalie J."
},
{
"family": "Bourgeron",
"given": "Thomas"
},
{
"family": "Falck-Ytter",
"given": "Terje"
},
{
"family": "Bussu",
"given": "Giorgia"
},
{
"family": "Banaschweski",
"given": "Tobias"
},
{
"family": "Aggensteiner",
"given": "Pascal-M"
},
{
"family": "Edden",
"given": "Richard"
},
{
"family": "Charman",
"given": "Tony"
},
{
"family": "Pretzsch",
"given": "Charlotte"
},
{
"family": "Murphy",
"given": "Declan"
},
{
"family": "Arichi",
"given": "Tomoki"
},
{
"family": "Puts",
"given": "Nicolaas A."
}
],
"container-title-short":
"DOI": "10.64898/
"publisher": "medRxiv",
"URL": "https://
"issued": {
"date-parts": [
[
2026,
7,
16
]
]
}
}
The tracing map gets a citation of its own once an author has validated it and it has a DOI.
Similar papers
The papers with a page that share the most with this one: the tools found in their code, their categories, datasets, cited references and authors, the rarest counting most.
- [1] doi:10.1038/s41398-026-04036-z [code]
- Distinct sensory atypicalities bridge the gap between brain chemistry and motor dysfunction in autism.Journal: Translational psychiatryIn common: ggplot2, tidyverse, autism, 7 references, author Nicolaas A. Puts
- [2] doi:10.1002/advs.202519479 [code]
- Diminished Signal-to-Noise Ratio Disrupts Somatosensory Population Encoding and Drives Tactile Hyposensitivity in the Fmr1&
lt;sup& gt;-/ y& lt;/ sup& gt; Autism Model. Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)In common: autism, 6 references - [3] doi:10.1002/mrm.70380 [code]
- The Impact and Reliability of Tissue Segmentation on In Vivo Magnetic Resonance Spectroscopy Metabolite Quantification.Journal: Magnetic resonance in medicineIn common: 5 references
- [4] doi:10.1038/s41598-026-42120-y [code]
- Qualitative EEG abnormalities in ASD reflect inhibition-dominated brain dynamics.Journal: Scientific reportsIn common: autism, 5 references
- [5] doi:10.1016/j.xhgg.2026.100652 [code]
- CRISPR-engineered deletion of POGZ alters transcription factor binding at promoters of genes involved in synaptic signaling.Journal: HGG advancesIn common: ggpubr, data.table, ggplot2, 1 other tool, autism, cellular / molecular, 1 reference
- [6] doi:10.1162/imag.a.1252 [code]
- Does the brain's E:I balance really shape long-range temporal correlations? Lessons learned from 3T MRI.Journal: Imaging neuroscience (Cambridge, Mass.)In common: tidyverse, 4 references
- [7] doi:10.1126/sciadv.aec9291 [code]
- Computational mechanisms of perception in autism revealed using games inspired by rodent operant tasks.Journal: Science advancesIn common: ggpubr, data.table, ggplot2, 1 other tool, autism, 1 reference
- [8] doi:10.1038/s42003-026-10045-x [code]
- Spatiotemporal brain transcriptomics reveal risk gene hot-spots in major neuropsychiatric disorders.Journal: Communications biologyIn common: ggpubr, data.table, ggplot2, 1 other tool, genetics / omics, cellular / molecular, 1 reference
- [9] doi:10.1038/s41593-026-02287-z [code]
- Autism subtypes identified using cross-species functional connectivity analyses.Journal: Nature neuroscienceIn common: ggpubr, ggplot2, tidyverse, autism, 2 references
- [10] doi:10.1038/s43856-026-01510-z [code]
- Mapping genetic convergence across brain structure, mental health, and cardiometabolic disease.Journal: Communications medicineIn common: ggpubr, data.table, ggplot2, 1 other tool, genetics / omics, 1 reference
Contribute
The authors of this paper can claim it, correct its record and validate its tracing map, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to OSCR's own machine, which answers it; your account page follows them.
Sign in with ORCID to claim this paper as one of its authors, correct its record or validate its tracing map: when the paper's metadata lists your ORCID iD, you are recognized at once. Maintainers of its code: sign in with GitHub, then claim the repository on your account page.
Claim this paper
Correct its record
Say what each link of this record is, remove the ones that are not the paper's, add the ones that are missing. The correction becomes a new version of the record, in its Versions section.
Validate its tracing map
You validate the map as this page shows it: 1 repository of the authors' code, each at its verified commit and with its license, 26 scripts, and 3 matches between paragraphs and code (see the Code and Map sections). It then receives a DOI on Zenodo, with you (your ORCID iD) and OSCR as its creators; the code itself is not deposited.
The map's fingerprint: sha256:3b0e633cf60ea76f…
Add the badge to its README
The badge links the code to this page. Copy one of these into the README of the paper's code: only you decide where it goes, and nothing is changed for you.
Markdown
[, paste the snippet at the top, then “Commit changes…” and, to review it first, “Create a new branch and start a pull request”. You open the pull request; OSCR asks for no permission.
Request its removal
To ask OSCR to remove this record, the copies of its authors' scripts or its tracing map, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).
Discussion, reproductions, activity
Discussion: questions and error reports about this paper and its code, from signed-in readers and its authors. It opens with sign-in.
Reproductions: reports from readers who ran the authors' code: what they reproduced, with which environment, commit and data. It opens with sign-in.
Activity: what happens around this paper: new versions of its record, its map's validation, discussions and reproductions. It opens with sign-in.