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Dynamic regulation of mRNA acetylation at synapses by spatial memory in mouse hippocampus.

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The authors' code

License · 21 lines · 1 KB · MIT

  1. MIT License
  2. Copyright (c) 2026 YinDMlab
  3. Permission is hereby granted, free of charge, to any person obtaining a copy
  4. of this software and associated documentation files (the "Software"), to deal
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LICENSE at commit 1c7529b, under MIT · at the source

Overview

Authors: Hai-Qian Zhou1,2, Zhen Zhu1, Jia-Wei Zhang1, Wei-Peng Lin1,3,4, Hao-JY Jin1, Yang-Yang Ding1, Shuai Liu1,3, Dong-Min Yin1,3,5
  1. Key Laboratory of Brain Functional Genomics, Ministry of Education and Shanghai, Affiliated Mental Health Center, School of Life Science, East China Normal University Shanghai China
  2. Department of Neurology, Shanghai Fifth People’s Hospital, Fudan University Shanghai China
  3. Shanghai Changning Mental Health Center, Affiliated Mental Health Center of East China Normal University Shanghai China
  4. Chongqing Key Laboratory of Precision Optics, Chongqing Institute of East China Normal University Chongqing China
  5. NYU-ECNU Institute of Brain and Cognitive Science at NYU Shanghai Shanghai China
Journal: eLife, volume 14, article RP108995
Dates: published online 23 March 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.7554/elife.108995 · PMID 41870036 · PMCID PMC13008358 · OpenAlex W4416919836
Open access: gold, a free copy (OpenAlex)
Status: empty repository (how the code is found and verified)
Categories: mouse (organism), cellular / molecular (subfield)
Methods: Statistics
Keywords: synaptic plasticity, memory consolidation, N-acetyltransferase 10, epigenetic modification, acetylation, Mouse
MeSH: Hippocampus*, RNA, Messenger*, Spatial Memory*, Synapses*, Acetylation, Animals, Cytidine, Epitranscriptome, Epitranscriptomics, Male, Mice, Mice, Inbred C57BL, RNA Methylation (* major topic)
Journal subjects: Neuroscience
Topic: RNA modifications and cancer (Molecular Biology, Biochemistry, Genetics and Molecular Biology), according to OpenAlex
Funding: STI2030‐Major Projects (Grant No. 2021ZD0202500); National Natural Science Foundation of China (Grant No. 32500917, Grant No. 2025GZRFY01); Natural Science Foundation of Chongqing, China (Grant No. 2022NSCQ-MSX5813); East China Normal University (001)
Citations: cited by 2 papers (Europe PMC); 118 references in the paper

Abstract

Precise regulation of protein synthesis is critical for brain functions such as long-term memory, and its dysregulation is implicated in numerous memory disorders. While mRNA methylation, such as N6-methyladenosine (m6A), has been widely studied in memory, the role of mRNA acetylation remains largely unknown. N4-acetylcytidine (ac4C), the only known form of RNA acetylation in eukaryotes, promotes mRNA stability and translation. In this study, we identified the ac4C epitranscriptome in mouse hippocampal homogenates and synaptosomes through ac4C-RNA immunoprecipitation followed by next-generation sequencing (acRIP-seq). The Morris water maze was employed to induce and evaluate memory acquisition and forgetting processes. We show that synaptic ac4C levels are dynamically regulated, increasing after memory formation and returning to baseline after natural forgetting. The dynamic changes of ac4C-mRNAs regulated by memory were validated by ac4C dot-blot, liquid chromatography–tandem mass spectrometry, and acRIP-qPCR analysis. We further demonstrate that N-acetyltransferase 10, the ac4C writer, in mouse hippocampus is important for spatial memory via regulating memory-related mRNAs, proteins, and ultimately synaptic plasticity. Lastly, we generated a freely accessible website (http://ac4catlas.com) that included the dataset of ac4C epitranscriptome in mouse hippocampus. Altogether, these results demonstrate that dynamic and localized mRNA acetylation is important for synaptic plasticity and memory.

Reproduced under the paper's license (CC BY), from the paper cited above.

Repository

Its files are read in the Code ↔ Paper reader above.

YinDMlab/ac4CRIP-seq-analysis

License: MIT
State: the link answers, verified on 30 September 2026
Evidence: files inventoried
Commit: 1c7529b0f52bb0d0cb7806e2ad87d84b1cef9690, 17 March 2026
Size: 4 files, 0 scripts
Software Heritage: not archived
Found in: “Code availability”
Holds: README, license file
Not found: CITATION.cff, environment file, tests, continuous integration, documentation
Availability: 1 check, the latest on 30 September 2026: the link answers
  • 30 September 2026: the link answers
2 files

Code availability

Custom code used in this paper is available at https://github.com/YinDMlab/ac4CRIP-seq-analysis copy archived at YinDMlab, 2024.

Reproduced under the paper's license (CC BY), from the paper cited above.

Tracing map

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What the map holds:

  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 0 scripts, each with its path and the digest of its content;
  • no match between paragraphs and code yet;
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Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

No dataset and no data link were found in the paper.

Data availability

All data are available in the main text, supplementary or source data files. The original data of acRIP-seq is accessible via the website (http://ac4Catlas.com/) or GEO database (GSE261922). All unique materials used are readily available from the corresponding author upon reasonable requests.

The following dataset was generated:

ZhouH ZhangJ ZhuZ ChenD YinD 2024Dynamic change of ac4C in mouse hippocampus during learning and memoryNCBI Gene Expression OmnibusGSE261922

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

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Version 1, 30 September 2026: the first record

Recorded: type, language, journal, volume, pages, dates, 8 authors, 6 keywords, 13 MeSH terms, 4 funders, 115 references.

Cite

This paper

Zhou, H.-Q., Zhu, Z., Zhang, J.-W., Lin, W.-P., Jin, H.-J., Ding, Y.-Y., Liu, S., & Yin, D.-M. (2026). Dynamic regulation of mRNA acetylation at synapses by spatial memory in mouse hippocampus. eLife, 14, RP108995. https://doi.org/10.7554/elife.108995

BibTeX

@article{zhou2026dynamic,
author = {Zhou, Hai-Qian and Zhu, Zhen and Zhang, Jia-Wei and Lin, Wei-Peng and Jin, Hao-JY and Ding, Yang-Yang and Liu, Shuai and Yin, Dong-Min},
title = {{Dynamic regulation of mRNA acetylation at synapses by spatial memory in mouse hippocampus}},
journal = {eLife},
year = {2026},
month = mar,
volume = {14},
pages = {RP108995},
publisher = {eLife Sciences Publications, Ltd},
issn = {2050-084X},
doi = {10.7554/elife.108995},
url = {https://doi.org/10.7554/elife.108995},
pmid = {41870036},
pmcid = {PMC13008358}
}

RIS

TY - JOUR
AU - Zhou, Hai-Qian
AU - Zhu, Zhen
AU - Zhang, Jia-Wei
AU - Lin, Wei-Peng
AU - Jin, Hao-JY
AU - Ding, Yang-Yang
AU - Liu, Shuai
AU - Yin, Dong-Min
TI - Dynamic regulation of mRNA acetylation at synapses by spatial memory in mouse hippocampus
T2 - eLife
J2 - eLife
PY - 2026
DA - 2026/03/23
VL - 14
SP - RP108995
SN - 2050-084X
PB - eLife Sciences Publications, Ltd
DO - 10.7554/elife.108995
UR - https://doi.org/10.7554/elife.108995
LA - en
ER -

CSL-JSON

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