Every paper, by date: page 131

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 131 of 200: 22 March 2024 to 14 March 2024.

Friday, 22 March 2024 (25 papers, 24 on this page)

[29121] doi:10.1007/s11571-024-10093-1 [paper, repository]

EEG resting state alpha dynamics predict an individual's vulnerability to auditory hallucinations.

Journal: Cognitive neurodynamics

Authors' code: daraya78/BSD (no license)

Status: code verified, 97 files readable, 1 match

[29122] doi:10.1007/s12015-024-10698-3 [paper, data]

Single-cell Profiling of Reprogrammed Human Neural Stem Cells Unveils High Similarity to Neural Progenitors in the Developing Central Nervous System.

Journal: Stem cell reviews and reports

Status: code on request, 1 dataset cited

[29123] doi:10.1016/j.bpsgos.2024.100310 [paper, repository]

Carbon Dioxide Reactivity Differentially Predicts Fear Expression After Extinction and Retrieval-Extinction in Rats.

Journal: Biological psychiatry global open science

Authors' code: dataverse.tdl.org/dataverse/monfilsfearmemorylab (no license), jashu/beset (no license)

Status: code verified, 49 files readable, 3 matches

[29124] doi:10.1016/j.celrep.2024.113958 [paper, repository]

Exploration biases forelimb reaching strategies.

Journal: Cell reports

Authors' code: danbider/lightning-pose (MIT), Columbia-University-ZMBBI-AIC/Teenscience (GPL-3.0), murray-lab/RL_Reacher (no license)

Status: code verified, 182 files readable, 5 matches

[29125] doi:10.1016/j.crmeth.2024.100740 [paper]

All-optical presynaptic plasticity induction by photoactivated adenylyl cyclase targeted to axon terminals.

Journal: Cell reports methods

Status: code on request

[29126] doi:10.1016/j.csbj.2024.03.018 [paper, repository]

SERT-StructNet: Protein secondary structure prediction method based on multi-factor hybrid deep model.

Journal: Computational and structural biotechnology journal

Authors' code: LindaEdu/SERT-StructNet (no license)

Status: dead link

[29127] doi:10.1016/j.xcrm.2024.101480 [paper, repository]

Neuroactive metabolites and bile acids are altered in extremely premature infants with brain injury.

Journal: Cell reports. Medicine

Authors' code: bihealth/NeatMS (MIT)

Status: code verified, 13 files readable, 1 match

[29128] doi:10.1038/s41380-024-02502-y [paper, repository]

The Alzheimer's disease risk gene BIN1 regulates activity-dependent gene expression in human-induced glutamatergic neurons.

Journal: Molecular psychiatry

Authors' code: immunogenomics/harmony (no license)

Status: code verified, 32 files readable

[29129] doi:10.1038/s41467-024-46899-0 [paper, data]

The aldehyde dehydrogenase 2 rs671 variant enhances amyloid β pathology.

Journal: Nature communications

Status: data only, 2 datasets cited

[29130] doi:10.1038/s41467-024-47021-0 [paper, data]

Serotonergic modulation of vigilance states in zebrafish and mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[29131] doi:10.1038/s41536-024-00352-4 [paper]

Intrinsic and extrinsic actions of human neural progenitors with SUFU inhibition promote tissue repair and functional recovery from severe spinal cord injury.

Journal: NPJ Regenerative medicine

Status: code on request

[29132] doi:10.1038/s41598-024-57095-x [paper, data]

Role of folate receptor α in the partial rejuvenation of dentate gyrus cells: Improvement of cognitive function in 21-month-old aged mice.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29133] doi:10.1084/jem.20221190 [paper, data]

A TBK1 variant causes autophagolysosomal and motoneuron pathology without neuroinflammation in mice.

Journal: The Journal of experimental medicine

Status: data only, 2 datasets cited

[29134] doi:10.1111/jne.13384 [paper, repository]

NK3R signalling in the posterodorsal medial amygdala is involved in stress-induced suppression of pulsatile LH secretion in female mice.

Journal: Journal of neuroendocrinology

Authors' code: git.exeter.ac.uk/mv286/kndy-model-with-mepd-inputs (no license)

Status: code found, still to be checked

[29135] doi:10.1126/sciadv.adn4649 [paper, repository]

Childhood cancer mutagenesis caused by transposase-derived PGBD5.

Journal: Science advances

Authors' code: nicolaroberts/hdp (GPL-3.0), UM-Myeloma-Genomics/mmsig (other)

Status: code verified, 67 files readable

[29136] doi:10.1159/000536574 [paper, data]

Genetic Variability of <i>SOX10</i>-Related Disorders within an Italian Family: Straddling the Line between Kallmann and Waardenburg Syndrome.

Journal: Molecular syndromology

Status: data only, 1 dataset cited

[29137] doi:10.1162/imag_a_00111 [paper, repository]

Demystifying the likelihood of reidentification in neuroimaging data: A technical and regulatory analysis.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 10815242 (CC-BY-4.0), poldrack/reidentification-simulations (MIT), Zenodo 10359718 (CC-BY-4.0)

Status: code verified, 9 files readable, 2 matches

[29138] doi:10.1162/imag_a_00113 [paper, repository]

EiDA: A lossless approach for dynamic functional connectivity; application to fMRI data of a model of ageing.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: alteriis/EiDA (no license)

Status: code verified, 118 files readable, 3 matches

[29139] doi:10.1186/s12916-024-03358-3 [paper, data]

Sleep alterations as a function of 88 health indicators.

Journal: BMC medicine

Status: data only, 1 dataset cited

[29140] doi:10.1186/s13059-023-03150-1 [paper, repository]

txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility.

Journal: Genome biology

Authors' code: adeylab/txci-atac (MIT), cusanovichlab/txciatac (MIT), OSF vnpwb (no license), OSF ya7se (no license)

Status: code verified, 23 files readable, 16 matches

[29141] doi:10.1371/journal.pcbi.1011559 [paper, repository]

Modelling and analysis of cAMP-induced mixed-mode oscillations in cortical neurons: Critical roles of HCN and M-type potassium channels.

Journal: PLoS computational biology

Authors' code: researchdata.cab.unipd.it/1194 (no license)

Status: code verified

[29142] doi:10.1371/journal.pone.0300628 [paper, repository]

See Elegans: Simple-to-use, accurate, and automatic 3D detection of neural activity from densely packed neurons.

Journal: PloS one

Authors' code: enricoliit/SeeElegans (GPL-3.0)

Status: code verified, 108 files readable, 3 matches

[29143] doi:10.3389/fnhum.2024.1305164 [paper, repository]

Explainable artificial intelligence (xAI) in neuromarketing/consumer neuroscience: an fMRI study on brand perception.

Journal: Frontiers in human neuroscience

Authors' code: shap/shap (MIT)

Status: code verified, 56 files readable

[29144] doi:10.3390/biology13040203 [paper, data]

Unified Convolutional Sparse Transformer for Disease Diagnosis, Monitoring, Drug Development, and Therapeutic Effect Prediction from EEG Raw Data.

Journal: Biology

Status: data only, 2 datasets cited

Thursday, 21 March 2024 (35 papers)

[29145] doi:10.1007/s10787-024-01442-x [paper, data]

Neuroprotective effects of rutin against cuprizone-induced multiple sclerosis in mice.

Journal: Inflammopharmacology

Status: data only, 1 dataset cited

[29146] doi:10.1007/s10877-024-01151-4 [paper, repository]

Early prediction of ventricular peritoneal shunt dependency in aneurysmal subarachnoid haemorrhage patients by recurrent neural network-based machine learning using routine intensive care unit data.

Journal: Journal of clinical monitoring and computing

Authors' code: agschweingruber/sah (MIT)

Status: code verified, 7 files readable, 2 matches

[29147] doi:10.1016/j.celrep.2024.113953 [paper, repository]

Peripheral neuronal activation shapes the microbiome and alters gut physiology.

Journal: Cell reports

Authors' code: Zenodo 10525220 (other-open), mazmanianlab/Griffiths_Yoo_et_al (no license), jdidion/atropos (MIT)

Status: code verified, 99 files readable, 4 matches

[29148] doi:10.1016/j.cub.2024.02.074 [paper, data]

A brainstem to hypothalamic arcuate nucleus GABAergic circuit drives feeding.

Journal: Current biology : CB

Status: code on request, 1 dataset cited

[29149] doi:10.1016/j.dib.2024.110355 [paper, data]

Online yarn hairiness- Loop & protruding fibers dataset.

Journal: Data in brief

Status: data only, 2 datasets cited

[29150] doi:10.1016/j.stemcr.2024.02.007 [paper, data]

Prosaposin maintains adult neural stem cells in a state associated with deep quiescence.

Journal: Stem cell reports

Status: code on request, 1 dataset cited

[29151] doi:10.1038/s41467-024-46146-6 [paper, data]

The AMPK-related kinase NUAK1 controls cortical axons branching by locally modulating mitochondrial metabolic functions.

Journal: Nature communications

Status: data only, 1 dataset cited

[29152] doi:10.1038/s41467-024-46281-0 [paper, repository]

A cerebro-cerebellar network for learning visuomotor associations.

Journal: Nature communications

Authors' code: naveen-7/Cerebellum-reward (no license), naveen-7/Cerebellum_reward (no license)

Status: code verified, 20 files readable

[29153] doi:10.1038/s41467-024-46874-9 [paper, repository]

Nucleus accumbens D1- and D2-expressing neurons control the balance between feeding and activity-mediated energy expenditure.

Journal: Nature communications

Authors' code: Trifilieff-Lab/Walle_2024_NatCommun (no license), Zenodo 10669866 (CC-BY-4.0)

Status: code verified, 206 files readable, 6 matches

[29154] doi:10.1038/s41539-024-00232-y [paper]

The neural and cognitive basis of expository text comprehension.

Journal: NPJ science of learning

Status: code on request

[29155] doi:10.1038/s41592-024-02226-5 [paper, data]

RoboEM: automated 3D flight tracing for synaptic-resolution connectomics.

Journal: Nature methods

Status: code on request, 2 datasets cited

[29156] doi:10.1038/s41598-024-56897-3 [paper, repository]

The neural basis of naturalistic semantic and social cognition.

Journal: Scientific reports

Authors' code: OSF dur8a (no license)

Status: code verified, 25 files readable, 17 matches

[29157] doi:10.1038/s41598-024-57384-5 [paper, repository]

Complexity synchronization in emergent intelligence.

Journal: Scientific reports

Authors' code: Korosh137/Complexity-Synchroni (no license)

Status: dead link

[29158] doi:10.1038/s41598-024-57426-y [paper, data]

Language prediction in monolingual and bilingual speakers: an EEG study.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29159] doi:10.1038/s41598-024-57476-2 [paper, repository]

Proof-of-concept evidence for high-density EEG investigation of sleep slow wave traveling in First-Episode Psychosis.

Journal: Scientific reports

Authors' code: Mensen/swa-matlab (no license)

Status: code verified, 56 files readable

[29160] doi:10.1038/s44318-024-00068-7 [paper, data]

The growth factor EPIREGULIN promotes basal progenitor cell proliferation in the developing neocortex.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[29161] doi:10.1083/jcb.202307092 [paper, data]

RAB3 phosphorylation by pathogenic LRRK2 impairs trafficking of synaptic vesicle precursors.

Journal: The Journal of cell biology

Status: data only, 3 datasets cited

[29162] doi:10.1093/braincomms/fcae072 [paper, data]

Explicit and implicit motor simulations are impaired in individuals with aphantasia.

Journal: Brain communications

Status: data only, 1 dataset cited

[29163] doi:10.1111/mec.17327 [paper, repository]

Neurogenomic landscape associated with status-dependent cooperative behaviour.

Journal: Molecular ecology

Authors' code: periperipatus.github.io/pifi_brain_transcriptome (no license), periperipatus/PIFI_brain_transcriptome (no license)

Status: code verified, 3 files readable

[29164] doi:10.1159/000537865 [paper, data]

Global Economic Evaluation of the Reported Costs of Deep Brain Stimulation.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[29165] doi:10.1186/s12864-024-10230-4 [paper, data]

Chromatin accessibility and H3K9me3 landscapes reveal long-term epigenetic effects of fetal-neonatal iron deficiency in rat hippocampus.

Journal: BMC genomics

Status: data only, 1 dataset cited

[29166] doi:10.1186/s13578-024-01218-4 [paper, repository]

Revealing the role of SPP1⁺ macrophages in glioma prognosis and therapeutic targeting by investigating tumor-associated macrophage landscape in grade 2 and 3 gliomas.

Journal: Cell & bioscience

Authors' code: ws2024/glioma2024 (no license)

Status: code verified, 9 files readable, 14 matches

[29167] doi:10.1371/journal.pone.0284342 [paper, repository]

Interpretable prediction of brain activity during conversations from multimodal behavioral signals.

Journal: PloS one

Authors' code: Hmamouche/BrainPredict (GPL-3.0)

Status: code verified, 557 files readable, 2 matches

[29168] doi:10.1371/journal.pone.0290209 [paper, data]

The impact of ZIKV infection on gene expression in neural cells over time.

Journal: PloS one

Status: data only, 1 dataset cited

[29169] doi:10.1371/journal.pone.0301228 [paper, repository]

Electrophysiological correlates of symbolic numerical order processing.

Journal: PloS one

Authors' code: OSF 7udzb (no license)

Status: code verified, 7 files readable, 7 matches

[29170] doi:10.3389/fnhum.2024.1329086 [paper, repository]

fNIRS dataset during complex scene analysis.

Journal: Frontiers in human neuroscience

Authors' code: NSNC-Lab/fNIRS_DecodingSpatialAttention (GPL-3.0), BUNPC/AtlasViewer (BSD-2-Clause)

Status: code verified, 1,697 files readable, 9 matches

[29171] doi:10.3389/fnins.2024.1309684 [paper, data]

Joint-tissue integrative analysis identifies high-risk genes for Parkinson's disease.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[29172] doi:10.3389/fphar.2024.1359319 [paper]

Alpha 2-adrenoceptor participates in anti-hyperalgesia by regulating metabolic demand.

Journal: Frontiers in pharmacology

Status: data only

[29173] doi:10.3390/bioengineering11030295 [paper]

Leveraging Deep Learning for Fine-Grained Categorization of Parkinson's Disease Progression Levels through Analysis of Vocal Acoustic Patterns.

Journal: Bioengineering (Basel, Switzerland)

Status: code on request

[29174] doi:10.3390/cancers16061233 [paper, data]

Enhancing Whole-Brain Magnetic Field Homogeneity for 3D-Magnetic Resonance Spectroscopic Imaging with a Novel Unified Coil: A Preliminary Study.

Journal: Cancers

Status: data only, 1 dataset cited

[29175] doi:10.3390/genes15030385 [paper, data]

Olfactory Receptor OR2K2 Expression in Human Choroid Plexus as a Potential Marker in Early Sporadic Alzheimer's Disease.

Journal: Genes

Status: data only, 1 dataset cited

[29176] doi:10.7554/elife.88420 [paper, repository]

Comparative brain-wide mapping of ketamine- and isoflurane-activated nuclei and functional networks in the mouse brain.

Journal: eLife

Authors' code: github-c-Fos-analysis/YWWLab (MIT)

Status: code verified, 18 files readable, 4 matches

[29177] doi:10.7554/elife.89368 [paper, repository]

Distinctive whole-brain cell types predict tissue damage patterns in thirteen neurodegenerative conditions.

Journal: eLife

Authors' code: neuropm-lab/cellmaps (CC-BY-4.0)

Status: code verified, 3 files readable

[29178] doi:10.7554/elife.89743 [paper, repository]

Memory-specific encoding activities of the ventral tegmental area dopamine and GABA neurons.

Journal: eLife

Authors' code: vglykos/memory-specific-encoding-activities-of-the-ventral-tegmental-area-dopamine-and-gaba-neurons (no license)

Status: code verified, 17 files readable

[29179] doi:10.7554/elife.93246 [paper, repository]

A latent clinical-anatomical dimension relating metabolic syndrome to brain structure and cognition.

Journal: eLife

Authors' code: murraylab/brainsmash (GPL-3.0), csi-hamburg/2023_petersen_mets_brain_morphology (MIT), csi-hamburg/csiframe (MIT)

Status: code verified, 109 files readable, 15 matches

Wednesday, 20 March 2024 (22 papers)

[29180] doi:10.1016/j.dcn.2024.101368 [paper, repository]

Neighborhood disadvantage and parenting predict longitudinal clustering of uncinate fasciculus microstructural integrity and clinical symptomatology in adolescents.

Journal: Developmental cognitive neuroscience

Authors' code: OSF 2pz8v (no license)

Status: code verified, 1 file readable, 5 matches

[29181] doi:10.1016/j.dib.2024.110345 [paper, data]

Simulated dataset on coordinated reset stimulation of homogeneous and inhomogeneous networks of excitatory leaky integrate-and-fire neurons with spike-timing-dependent plasticity.

Journal: Data in brief

Status: data only, 3 datasets cited

[29182] doi:10.1016/j.heliyon.2024.e28235 [paper, data]

Improved empirical mode decomposition bagging RCSP combined with Fisher discriminant method for EEG feature extraction and classification.

Journal: Heliyon

Status: data only, 1 dataset cited

[29183] doi:10.1016/j.ssmph.2024.101655 [paper, data]

Pathways explaining racial/ethnic and socio-economic disparities in brain white matter integrity outcomes in the UK Biobank study.

Journal: SSM - population health

Status: data only, 1 dataset cited

[29184] doi:10.1038/s41419-024-06603-y [paper, data]

DMRTA2 supports glioma stem-cell mediated neovascularization in glioblastoma.

Journal: Cell death & disease

Status: data only, 4 datasets cited

[29185] doi:10.1038/s41593-024-01597-4 [paper, repository]

Co-dependent excitatory and inhibitory plasticity accounts for quick, stable and long-lasting memories in biological networks.

Journal: Nature neuroscience

Authors' code: ejagnes/codependent_plasticity (MIT)

Status: code verified, 65 files readable, 1 match

[29186] doi:10.1038/s41598-024-57252-2 [paper]

Gait-related beta-gamma phase amplitude coupling in the subthalamic nucleus of parkinsonian patients.

Journal: Scientific reports

Status: code on request

[29187] doi:10.1073/pnas.2320277121 [paper, data]

Exitron splicing of odor receptor genes in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[29188] doi:10.1091/mbc.e23-12-0463 [paper, repository]

CD56/NCAM mediates cell migration of human NK cells by promoting integrin-mediated adhesion turnover.

Journal: Molecular biology of the cell

Authors' code: Zenodo 8221517 (other-open), Zenodo 8096717 (other-open), michael-shannon/cellplato (MIT), mace-lab/optical_flow_batch (MIT)

Status: code verified, 283 files readable, 8 matches

[29189] doi:10.1098/rspb.2023.2606 [paper, repository]

Human brains preserve in diverse environments for at least 12 000 years.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7109012 (no license)

Status: code found, still to be checked

[29190] doi:10.1101/gr.278101.123 [paper, repository]

Haplotype-resolved 3D chromatin architecture of the hybrid pig.

Journal: Genome research

Authors' code: QianZiTang/linyu (no license)

Status: code verified, 6 files readable, 1 match

[29191] doi:10.1126/sciadv.adj8213 [paper, data]

Functional representation of trigeminal nociceptive input in the human periaqueductal gray.

Journal: Science advances

Status: data only, 1 dataset cited

[29192] doi:10.1152/jn.00387.2023 [paper, repository]

Human striatal association megaclusters.

Journal: Journal of neurophysiology

Authors' code: thomasyeolab/cbig (MIT), OSF rhbfn (no license)

Status: code verified, 2,021 files readable, 10 matches

[29193] doi:10.1186/s12880-024-01242-3 [paper, repository]

Contrast-enhanced to non-contrast-enhanced image translation to exploit a clinical data warehouse of T1-weighted brain MRI.

Journal: BMC medical imaging

Authors' code: SimonaBottani/image_synthesis (no license)

Status: code verified, 9 files readable, 5 matches

[29194] doi:10.1523/jneurosci.0465-23.2023 [paper, repository]

Gray and White Matter Metrics Demonstrate Distinct and Complementary Prediction of Differences in Cognitive Performance in Children: Findings from ABCD (&lt;i&gt;N&lt;/i&gt; = 11,876).

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF ryskf (no license)

Status: code verified, 3 files readable

[29195] doi:10.1523/jneurosci.0909-23.2023 [paper, repository]

Specific and Nonuniform Brain States during Cold Perception in Mice.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: doi:10.5061/dryad.mkkwh713t (no license)

Status: dead link

[29196] doi:10.32604/or.2023.043391 [paper, data]

GRIK1 promotes glioblastoma malignancy and is a novel prognostic factor of poor prognosis.

Journal: Oncology research

Status: data only, 1 dataset cited

[29197] doi:10.3389/fnhum.2024.1358298 [paper, repository]

Electrophysiological analysis of signal detection outcomes emphasizes the role of decisional factors in recognition memory.

Journal: Frontiers in human neuroscience

Authors' code: Zenodo 1164038 (GPL-2.0)

Status: code verified

[29198] doi:10.3390/s24061979 [paper, data]

FC-TFS-CGRU: A Temporal-Frequency-Spatial Electroencephalography Emotion Recognition Model Based on Functional Connectivity and a Convolutional Gated Recurrent Unit Hybrid Architecture.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[29199] doi:10.3390/s24061981 [paper, repository]

An Analysis of Loss Functions for Heavily Imbalanced Lesion Segmentation.

Journal: Sensors (Basel, Switzerland)

Authors' code: marianocabezas/rethinking_dsc (GPL-3.0)

Status: code verified, 9 files readable, 6 matches

[29200] doi:10.5334/cpsy.104 [paper, repository]

Decomposition of Reinforcement Learning Deficits in Disordered Gambling via Drift Diffusion Modeling and Functional Magnetic Resonance Imaging.

Journal: Computational psychiatry (Cambridge, Mass.)

Authors' code: OSF mb8zr (no license)

Status: empty repository

[29201] doi:10.7554/elife.91601 [paper, data]

A previously undescribed scene-selective site is the key to encoding ego-motion in naturalistic environments.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 19 March 2024 (37 papers)

[29202] doi:10.1002/alz.13788 [paper, repository]

Viscous dynamics associated with hypoexcitation and structural disintegration in neurodegeneration via generative whole-brain modeling.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: neuro-jena.github.io/cat (no license), smazzanti/mrmr (MIT), carlosmig/EEG-Dementias (no license), fiuneuro/brainconn (GPL-3.0)

Status: code verified, 94 files readable, 13 matches

[29203] doi:10.1002/alz.13789 [paper, data]

Glymphatic system dysfunction predicts amyloid deposition, neurodegeneration, and clinical progression in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[29204] doi:10.1002/mrm.30081 [paper, repository]

Reproducibility of arterial spin labeling cerebral blood flow image processing: A report of the ISMRM open science initiative for perfusion imaging (OSIPI) and the ASL MRI challenge.

Journal: Magnetic resonance in medicine

Authors' code: OSF 6xyu3 (no license), pypi.org/project/asldro (no license), chenyang9526/LOFT_ASL_toolbox (no license)

Status: code verified, 21 files readable, 1 match

[29205] doi:10.1007/s00406-023-01739-y [paper, data]

Post-COVID breathlessness: a mathematical model of respiratory processing in the brain.

Journal: European archives of psychiatry and clinical neuroscience

Status: data only, 1 dataset cited

[29206] doi:10.1007/s00429-024-02776-6 [paper, data]

Aspiration removal of orbitofrontal cortex disrupts cholinergic fibers of passage to anterior cingulate cortex in rhesus macaques.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[29207] doi:10.1007/s11548-024-03090-6 [paper, repository]

Near-real-time Mueller polarimetric image processing for neurosurgical intervention.

Journal: International journal of computer assisted radiology and surgery

Authors' code: stefanomoriconi/libmpMuelMat (GPL-3.0)

Status: code verified, 125 files readable, 4 matches

[29208] doi:10.1016/j.celrep.2024.113951 [paper, data]

Energy balance drives diurnal and nocturnal brain transcriptome rhythms.

Journal: Cell reports

Status: code on request, 1 dataset cited

[29209] doi:10.1016/j.celrep.2024.113970 [paper]

Long-range inhibitory neurons mediate cortical neurovascular coupling.

Journal: Cell reports

Status: code on request

[29210] doi:10.1016/j.crmeth.2024.100738 [paper, repository]

Epigenomic tomography for probing spatially defined chromatin state in the brain.

Journal: Cell reports methods

Authors' code: Zenodo 10674070 (CC-BY-4.0), changlulab/Liu_Deng_et_al_2024 (GPL-3.0)

Status: code verified, 24 files readable, 4 matches

[29211] doi:10.1016/j.dcn.2024.101366 [paper, repository]

Neural correlates involved in perspective-taking in early childhood.

Journal: Developmental cognitive neuroscience

Authors' code: marlenemeyer/Neural-correlates-of-perspective-taking-at-age-4 (GPL-3.0), OSF au5z7 (no license)

Status: code verified, 56 files readable, 8 matches

[29212] doi:10.1016/j.dcn.2024.101367 [paper, repository]

Early life stress and functional network topology in children.

Journal: Developmental cognitive neuroscience

Authors' code: VU-BRAINS-lab/ABCD_Stressor_Network (no license), nda.nih.gov/abcd (no license)

Status: code verified, 4 files readable

[29213] doi:10.1016/j.isci.2024.109527 [paper]

Bursts of vagus nerve stimulation paired with auditory rehabilitation fail to improve speech sound perception in rats with hearing loss.

Journal: iScience

Status: code on request

[29214] doi:10.1016/j.isci.2024.109534 [paper]

Multiomics of early epileptogenesis in mice reveals phosphorylation and dephosphorylation-directed growth and synaptic weakening.

Journal: iScience

Status: code on request

[29215] doi:10.1016/j.xpro.2024.102972 [paper, data]

Protocol for stimulating specific rodent limb receptive fields while recording in vivo somatosensory-evoked activity.

Journal: STAR protocols

Status: code on request, 1 dataset cited

[29216] doi:10.1016/j.ymthe.2024.03.024 [paper]

APOE2 gene therapy reduces amyloid deposition and improves markers of neuroinflammation and neurodegeneration in a mouse model of Alzheimer disease.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: code on request

[29217] doi:10.1038/s41380-024-02517-5 [paper, data]

Gephyrin phosphorylation facilitates sexually dimorphic development and function of parvalbumin interneurons in the mouse hippocampus.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[29218] doi:10.1038/s41467-024-45919-3 [paper, repository]

Efficient coding of natural images in the mouse visual cortex.

Journal: Nature communications

Authors' code: CBS-NCB/mouseTextures (no license)

Status: empty repository, 1 file readable

[29219] doi:10.1038/s41467-024-45956-y [paper, repository]

Single cell atlas of Xenoturbella bocki highlights limited cell-type complexity.

Journal: Nature communications

Authors' code: sebepedroslab/Xenoturbella_sc_atlas (GPL-3.0)

Status: code verified, 8 files readable

[29220] doi:10.1038/s41467-024-46484-5 [paper, repository]

The influence of cortical activity on perception depends on behavioral state and sensory context.

Journal: Nature communications

Authors' code: llerussell/PyBehaviour (no license), llerussell/SLMTransformMaker3D (no license), llerussell/STAMovieMaker (no license), llerussell/Naparm (no license), llerussell/Bruker_PrairieLink (no license), llerussell/MONPangle (no license), Zenodo 10449686 (CC-BY-4.0), Zenodo 10449684 (CC-BY-4.0), Zenodo 10449682 (CC-BY-4.0), Zenodo 10449680 (CC-BY-4.0), Zenodo 10449690 (CC-BY-4.0), Zenodo 10449688 (CC-BY-4.0), llerussell/slmphasemaskmaker3d (no license)

Status: code verified, 187 files readable, 6 matches

[29221] doi:10.1038/s41531-024-00672-8 [paper, repository]

A topographical atlas of α-synuclein dosage and cell type-specific expression in adult mouse brain and peripheral organs.

Journal: NPJ Parkinson's disease

Authors' code: vari-bbc/Mouse_Brain_Heatmap (GPL-3.0)

Status: code verified, 3 files readable

[29222] doi:10.1038/s41537-024-00452-6 [paper, data]

Blunted brain responses to neutral faces in healthy first-degree relatives of patients with schizophrenia: an image-based fMRI meta-analysis.

Journal: Schizophrenia (Heidelberg, Germany)

Status: data only, 1 dataset cited

[29223] doi:10.1038/s41928-024-01134-y [paper]

An asynchronous wireless network for capturing event-driven data from large populations of autonomous sensors.

Journal: Nature electronics

Status: code on request

[29224] doi:10.1038/s42003-024-05923-1 [paper, repository]

Human cytomegalovirus (CMV) dysregulates neurodevelopmental pathways in cerebral organoids.

Journal: Communications biology

Authors' code: charlesfoster/CMV_Cerebral_Organoid_Paper (no license), s1corley/CMV (no license)

Status: code verified, 6 files readable, 6 matches

[29225] doi:10.1101/2024.03.19.581742 [paper, data]

Multi-Site Investigation of Gut Microbiota in CDKL5 Deficiency Disorder Mouse Models: Targeting Dysbiosis to Improve Neurological Outcomes

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[29226] doi:10.1101/lm.053996.124 [paper, repository]

Semantic associations restore neural encoding mechanisms.

Journal: Learning & memory (Cold Spring Harbor, N.Y.)

Authors' code: longtermmemorylab.com (no license)

Status: code verified

[29227] doi:10.1162/imag_a_00086 [paper, repository]

Longitudinal stability of cortical grey matter measures varies across brain regions, imaging metrics, and testing sites in the ABCD study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF rxmn2 (no license), OSF ukjvm (no license), sdparsons/Longitudinal_Stability_ABCD_Grey_Matter (no license)

Status: code verified, 12 files readable, 6 matches

[29228] doi:10.1162/imag_a_00110 [paper, repository]

Empathy from dissimilarity: Multivariate pattern analysis of neural activity during observation of somatosensory experience.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF daq9z (no license)

Status: code verified, 1 file readable

[29229] doi:10.1162/imag_a_00112 [paper]

Optimising the sensitivity of optically-pumped magnetometer magnetoencephalography to gamma band electrophysiological activity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[29230] doi:10.1172/jci.insight.178859 [paper, repository]

Prolonged exposure to lung-derived cytokines is associated with activation of microglia in patients with COVID-19.

Journal: JCI insight

Authors' code: NUPulmonary/2023_Grant_Poor (MIT), NUPulmonary/utils (no license)

Status: code verified, 73 files readable, 10 matches

[29231] doi:10.1186/s12885-024-12023-0 [paper, repository]

Convolutional neural network-based magnetic resonance image differentiation of filum terminale ependymomas from schwannomas.

Journal: BMC cancer

Authors' code: SLYXDWL/SpineTumorClassification (no license)

Status: code verified, 5 files readable, 3 matches

[29232] doi:10.1364/boe.517376 [paper, repository]

Optical signatures of thermal damage on ex-vivo brain, lung and heart tissues using time-domain diffuse optical spectroscopy.

Journal: Biomedical optics express

Authors' code: Zenodo 10685455 (CC-BY-4.0)

Status: code verified

[29233] doi:10.1371/journal.pbio.3002545 [paper, data]

Social bonding in groups of humans selectively increases inter-status information exchange and prefrontal neural synchronization.

Journal: PLoS biology

Status: data only, 1 dataset cited

[29234] doi:10.3389/fneur.2024.1330497 [paper]

Prediction of tissue outcome in acute ischemic stroke based on single-phase CT angiography at admission.

Journal: Frontiers in neurology

Status: code on request

[29235] doi:10.3389/fnins.2024.1337207 [paper, data]

GABAergic synapses from the ventral lateral septum to the paraventricular nucleus of hypothalamus modulate anxiety.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[29236] doi:10.3389/fnins.2024.1376570 [paper, repository]

A systematic review of automated methods to perform white matter tract segmentation.

Journal: Frontiers in neuroscience

Authors' code: MIC-DKFZ/TractSeg (Apache-2.0), HaoXu0507/ISBI2023-One-Shot-WM-Tract-Segmentation (no license), MIC-DKFZ/MITK-Diffusion (BSD-3-Clause), andvazva/FFClust (GPL-3.0), SlicerDMRI/DeepWMA (no license)

Status: code verified, 612 files readable

[29237] doi:10.3758/s13415-024-01183-y [paper, data]

Warning before misinformation exposure modulates memory encoding.

Journal: Cognitive, affective & behavioral neuroscience

Status: data only, 1 dataset cited

[29238] doi:10.5498/wjp.v14.i3.370 [paper]

Brain protective effect of dexmedetomidine <i>vs</i> propofol for sedation during prolonged mechanical ventilation in non-brain injured patients.

Journal: World journal of psychiatry

Status: code on request

Monday, 18 March 2024 (30 papers)

[29239] doi:10.1002/alz.13747 [paper, repository]

Delineating cognitive resilience using fractal regulation: Cross-sectional and longitudinal evidence from the Rush Memory and Aging Project.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Zenodo 3407188 (other-open), Zenodo 8411607 (other-open), pliphd/matlab-detrended-fluctuation-analysis (MIT), pliphd/actigraphy (MIT)

Status: code verified, 113 files readable, 1 match

[29240] doi:10.1007/s10585-024-10277-3 [paper, data]

TGFβ signalling pathway impacts brain metastases profiles in locally advanced colorectal cancer.

Journal: Clinical & experimental metastasis

Status: data only, 1 dataset cited

[29241] doi:10.1016/j.cell.2024.02.025 [paper, repository]

Contrasting somatic mutation patterns in aging human neurons and oligodendrocytes.

Journal: Cell

Authors' code: Zenodo 10784220 (CC-BY-4.0), broadinstitute/gtex-pipeline (BSD-3-Clause), parklab/luquette-glia-analysis (no license)

Status: code verified, 250 files readable, 30 matches

[29242] doi:10.1016/j.isci.2024.109521 [paper, data]

Neurophysiological effective network connectivity supports a threshold-dependent management of dynamic working memory gating.

Journal: iScience

Status: code on request, 1 dataset cited

[29243] doi:10.1016/j.omtn.2024.102161 [paper]

Favorable efficacy and reduced acute neurotoxicity by antisense oligonucleotides with 2',4'-BNA/LNA with 9-(aminoethoxy)phenoxazine.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[29244] doi:10.1017/s0033291724000229 [paper, repository]

Executive functioning, behavior, and white matter microstructure in the chronic phase after pediatric mild traumatic brain injury: results from the adolescent brain cognitive development study.

Journal: Psychological medicine

Authors' code: pnlbwh/dMRIharmonization (other), anjabetz/ABCD-mTBI (CC-BY-4.0), anjabetz/ABCD–mTBI (no license)

Status: code verified, 42 files readable, 6 matches

[29245] doi:10.1017/s003329172400031x [paper, data]

Reduced dorsal fronto-striatal connectivity at rest in anorexia nervosa.

Journal: Psychological medicine

Status: data only, 1 dataset cited

[29246] doi:10.1038/s41467-024-46275-y [paper, repository]

Nuclei-specific hypothalamus networks predict a dimensional marker of stress in humans.

Journal: Nature communications

Authors' code: OSF bq3fd (no license)

Status: code verified, 46 files readable, 16 matches

[29247] doi:10.1038/s41467-024-46387-5 [paper, data]

Broadband nonlinear modulation of incoherent light using a transparent optoelectronic neuron array.

Journal: Nature communications

Status: data only, 1 dataset cited

[29248] doi:10.1038/s41467-024-46398-2 [paper, repository]

Population-wide cerebellar growth models of children and adolescents.

Journal: Nature communications

Authors' code: amarquand/PCNtoolkit (GPL-3.0), Zenodo 10552295 (CC-BY-4.0)

Status: code verified, 126 files readable

[29249] doi:10.1038/s41467-024-46538-8 [paper, data]

HTRA1 disaggregates α-synuclein amyloid fibrils and converts them into non-toxic and seeding incompetent species.

Journal: Nature communications

Status: data only, 3 datasets cited

[29250] doi:10.1038/s41539-024-00236-8 [paper, data]

Electrocortical correlates of attention differentiate individual capacity in associative learning.

Journal: NPJ science of learning

Status: data only, 1 dataset cited

[29251] doi:10.1038/s41556-024-01378-y [paper, repository]

Competence for neural crest induction is controlled by hydrostatic pressure through Yap.

Journal: Nature cell biology

Authors' code: WhoIsJack/cavity_expansion (MIT)

Status: code verified, 7 files readable, 2 matches

[29252] doi:10.1038/s41593-024-01598-3 [paper, repository]

The dynamic state of a prefrontal-hypothalamic-midbrain circuit commands behavioral transitions.

Journal: Nature neuroscience

Authors' code: klusta-team/klustakwik (no license), NeuroAnalyz/SpikeTrains-LFP (no license)

Status: code verified, 24 files readable, 6 matches

[29253] doi:10.1038/s41593-024-01607-5 [paper, repository]

Natural language instructions induce compositional generalization in networks of neurons.

Journal: Nature neuroscience

Authors' code: ReidarRiveland/Instruct-RNN (no license)

Status: code verified, 26 files readable, 13 matches

[29254] doi:10.1038/s41598-024-56713-y [paper, data]

Reduced influence of perceptual context in mild traumatic brain injury is not an illusion.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29255] doi:10.1038/s41598-024-56983-6 [paper, data]

DDFC: deep learning approach for deep feature extraction and classification of brain tumors using magnetic resonance imaging in E-healthcare system.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29256] doi:10.1038/s41598-024-57250-4 [paper]

Feasibility of assessing non-invasive intracranial compliance using FSI simulation-based and MR elastography-based brain stiffness.

Journal: Scientific reports

Status: code on request

[29257] doi:10.1038/s44319-024-00117-6 [paper, repository]

SorLA restricts TNFα release from microglia to shape a glioma-supportive brain microenvironment.

Journal: EMBO reports

Authors' code: mdraminski/expressionLevelsSorLA (no license)

Status: empty repository, 1 file readable

[29258] doi:10.1073/pnas.2312664121 [paper, repository]

Sleep deprivation drives brain-wide changes in cholinergic presynapse abundance in &lt;i&gt;Drosophila melanogaster&lt;/i&gt;.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.5061/dryad.q573n5tqv (no license), Zenodo 10699263 (MIT)

Status: code verified, 6 files readable

[29259] doi:10.1073/pnas.2314802121 [paper, data]

ERK signaling expands mammalian cortical radial glial cells and extends the neurogenic period.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[29260] doi:10.1186/s12880-024-01239-y [paper]

Altered trends of local brain function in classical trigeminal neuralgia patients after a single trigger pain.

Journal: BMC medical imaging

Status: code on request

[29261] doi:10.1371/journal.pcbi.1011861 [paper, repository]

The condition for dynamic stability in humans walking with feedback control.

Journal: PLoS computational biology

Authors' code: hendrikreimann/WalkingModelPaper2023 (no license)

Status: code verified, 20 files readable, 1 match

[29262] doi:10.1371/journal.pcbi.1011942 [paper, repository]

Continuous evaluation of denoising strategies in resting-state fMRI connectivity using fMRIPrep and Nilearn.

Journal: PLoS computational biology

Authors' code: SIMEXP/fmriprep-denoise-benchmark (MIT), simexp/load_confounds (MIT), Zenodo 6941757 (CC-BY-4.0)

Status: code verified, 59 files readable, 24 matches

[29263] doi:10.26508/lsa.202302088 [paper, repository]

Aberrant DNA methylation distorts developmental trajectories in atypical teratoid/rhabdoid tumors.

Journal: Life science alliance

Authors' code: CRI-group/DNA_meth_ATRT (no license)

Status: code verified, 5 files readable, 6 matches

[29264] doi:10.3389/fneur.2024.1349710 [paper, data]

Relationship between sodium level and in-hospital mortality in traumatic brain injury patients of MIMIC IV database.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[29265] doi:10.3389/fnhum.2024.1397042 [paper, repository]

Erratum: Sharp detection of oscillation packets in rich time-frequency representations of neural signals.

Journal: Frontiers in human neuroscience

Authors' code: TransylvanianInstituteOfNeuroscience/OscillationDetection (no license)

Status: code verified, 16 files readable

[29266] doi:10.3389/fnins.2024.1353306 [paper, repository]

Greater white matter degeneration and lower structural connectivity in non-amnestic vs. amnestic Alzheimer's disease.

Journal: Frontiers in neuroscience

Authors' code: MASILab/Synb0-DISCO (no license)

Status: code verified, 18 files readable, 1 match

[29267] doi:10.3389/fphys.2024.1370795 [paper, repository]

Fibrosis modeling choice affects morphology of ventricular arrhythmia in non-ischemic cardiomyopathy.

Journal: Frontiers in physiology

Authors' code: lenamyk/reentry_simulations_post_processing (no license)

Status: code verified, 2 files readable, 1 match

[29268] doi:10.7554/elife.89763 [paper, data]

Pleiotropic effects of trisomy and pharmacologic modulation on structural, functional, molecular, and genetic systems in a Down syndrome mouse model.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 17 March 2024 (2 papers)

[29269] doi:10.1080/15592324.2024.2310977 [paper, data]

A library of electrophysiological responses in plants - a model of transversal education and open science.

Journal: Plant signaling & behavior

Status: data only, 1 dataset cited

[29270] doi:10.7150/ijbs.89883 [paper, data]

Optogenetic Stimulation of the Cardiac Vagus Nerve to Promote Heart Regenerative Repair after Myocardial Infarction.

Journal: International journal of biological sciences

Status: data only, 1 dataset cited

Saturday, 16 March 2024 (13 papers)

[29271] doi:10.1007/s12021-024-09656-8 [paper, repository]

Updates to the Melbourne Children's Regional Infant Brain Software Package (M-CRIB-S).

Journal: Neuroinformatics

Authors' code: DevelopmentalImagingMCRI/MCRIBS (no license)

Status: code verified, 1,000 files readable, 10 matches

[29272] doi:10.1016/j.dcn.2024.101365 [paper, repository]

Behavioral and neural responses to social rejection: Individual differences in developmental trajectories across childhood and adolescence.

Journal: Developmental cognitive neuroscience

Authors' code: jeroendmulder.github.io/social-emotion-regulation (no license), OSF hdrzc (no license)

Status: code verified

[29273] doi:10.1016/j.isci.2024.109515 [paper]

Anoxia-induced hippocampal LTP is regeneratively produced by glutamate and nitric oxide from the neuro-glial-endothelial axis.

Journal: iScience

Status: code on request

[29274] doi:10.1016/j.isci.2024.109522 [paper, data]

TDP-43 deficiency in suprachiasmatic nucleus perturbs rhythmicity of neuroactivity in prefrontal cortex.

Journal: iScience

Status: code on request, 1 dataset cited

[29275] doi:10.1016/j.jbc.2024.107172 [paper, data]

Identification of PS1/gamma-secretase and glutamate transporter GLT-1 interaction sites.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[29276] doi:10.1016/j.jcmgh.2024.03.006 [paper, repository]

Protease-Induced Excitation of Dorsal Root Ganglion Neurons in Response to Acute Perturbation of the Gut Microbiota Is Associated With Visceral and Somatic Hypersensitivity.

Journal: Cellular and molecular gastroenterology and hepatology

Authors' code: benjjneb/dada2 (LGPL-3.0)

Status: code verified, 34 files readable, 1 match

[29277] doi:10.1038/s41467-024-46589-x [paper, repository]

Maternal dietary fat during lactation shapes single nucleus transcriptomic profile of postnatal offspring hypothalamus in a sexually dimorphic manner in mice.

Journal: Nature communications

Authors' code: hyhy200g/MouseHypothalamus_snRNA-seq (no license), Zenodo 10654924 (CC-BY-4.0)

Status: code verified, 28 files readable, 14 matches

[29278] doi:10.1038/s41467-024-46617-w [paper, data]

Beyond the microcirculation: sequestration of infected red blood cells and reduced flow in large draining veins in experimental cerebral malaria.

Journal: Nature communications

Status: data only, 1 dataset cited

[29279] doi:10.1038/s41531-024-00673-7 [paper]

Advanced brain aging in Parkinson's disease with cognitive impairment.

Journal: NPJ Parkinson's disease

Status: code on request

[29280] doi:10.1186/s10020-024-00784-0 [paper, data]

Involvement of Fgf2-mediated tau protein phosphorylation in cognitive deficits induced by sevoflurane in aged rats.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 1 dataset cited

[29281] doi:10.1186/s13024-024-00715-x [paper, data]

Rejuvenating aged microglia by p16&lt;sup&gt;ink4a&lt;/sup&gt;-siRNA-loaded nanoparticles increases amyloid-β clearance in animal models of Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[29282] doi:10.3390/diagnostics14060629 [paper, data]

Innovative Strategies for Early Autism Diagnosis: Active Learning and Domain Adaptation Optimization.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[29283] doi:10.3390/ijms25063374 [paper, data]

In Silico Analysis Highlights Potential Predictive Indicators Associated with Secondary Progressive Multiple Sclerosis.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 15 March 2024 (36 papers)

[29284] doi:10.1002/advs.202308364 [paper, data]

Navigating Pubertal Goldilocks: The Optimal Pace for Hierarchical Brain Organization.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[29285] doi:10.1016/j.isci.2024.109511 [paper]

A mechanism linking ferroptosis and ferritinophagy in melatonin-related improvement of diabetic brain injury.

Journal: iScience

Status: code on request

[29286] doi:10.1016/j.isci.2024.109512 [paper]

The brain-specific kinase LMTK3 regulates neuronal excitability by decreasing KCC2-dependent neuronal Cl^- extrusion.

Journal: iScience

Status: code on request

[29287] doi:10.1016/j.neurot.2024.e00342 [paper]

Application of targeted liposomes-based salvianolic acid A for the treatment of ischemic stroke.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: code on request

[29288] doi:10.1016/j.xpro.2024.102954 [paper]

Protocol for quantifying pyramidal neuron hyperexcitability in a mouse model of neurodevelopmental encephalopathy.

Journal: STAR protocols

Status: code on request

[29289] doi:10.1016/j.xpro.2024.102957 [paper, repository]

Integrated staging of morphofunctional connectivity in neuronal cultures.

Journal: STAR protocols

Authors' code: DeVosLab/NeuroConnectivity (CC-BY-NC-SA-4.0), Zenodo 10726334 (CC-BY-4.0), Zenodo 17356962 (CC-BY-4.0), Zenodo 10726333 (CC-BY-4.0)

Status: code verified, 20 files readable, 1 match

[29290] doi:10.1016/j.xpro.2024.102967 [paper]

Protocol for two models of behavioral transition from action to no-action when facing prolonged uncontrollable experience in mice.

Journal: STAR protocols

Status: code on request

[29291] doi:10.1038/s41398-024-02858-3 [paper, repository]

Rhesus infant nervous temperament predicts peri-adolescent central amygdala metabolism &amp; behavioral inhibition measured by a machine-learning approach.

Journal: Translational psychiatry

Authors' code: foxlab-/uc-freeze (no license)

Status: dead link

[29292] doi:10.1038/s41467-024-46586-0 [paper, repository]

Local prediction-learning in high-dimensional spaces enables neural networks to plan.

Journal: Nature communications

Authors' code: IGITUGraz/Cognitive-Map-Learner (no license)

Status: code verified, 11 files readable

[29293] doi:10.1038/s41467-024-46690-1 [paper, repository]

Associations between handedness and brain functional connectivity patterns in children.

Journal: Nature communications

Authors' code: figshare 25314982 (CC-BY-4.0)

Status: code verified, 2 files readable

[29294] doi:10.1038/s41537-024-00457-1 [paper, repository]

Exploring functional dysconnectivity in schizophrenia: alterations in eigenvector centrality mapping and insights into related genes from transcriptional profiles.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: amwink/bias (GPL-3.0), Jfortin1/ComBatHarmonization (no license), netneurolab/abagen (BSD-3-Clause)

Status: code verified, 233 files readable, 5 matches

[29295] doi:10.1038/s41593-024-01588-5 [paper, repository]

Local origin of excitatory-inhibitory tuning equivalence in a cortical network.

Journal: Nature neuroscience

Authors' code: figshare 24921252 (CC-BY-4.0)

Status: code verified, 1,472 files readable, 15 matches

[29296] doi:10.1038/s41598-024-56305-w [paper]

Separation of bimodal fMRI responses in mouse somatosensory areas into V1 and non-V1 contributions.

Journal: Scientific reports

Status: code on request

[29297] doi:10.1038/s41598-024-56633-x [paper, repository]

Gamma power and beta envelope correlation are potential neural predictors of deep hypnosis.

Journal: Scientific reports

Authors' code: Yeganehfrh/SugNet (no license)

Status: code verified, 44 files readable, 15 matches

[29298] doi:10.1038/s41598-024-56800-0 [paper, data]

Diverse adolescents' transcendent thinking predicts young adult psychosocial outcomes via brain network development.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29299] doi:10.1038/s41598-024-56990-7 [paper, repository]

Generalisability of epileptiform patterns across time and patients.

Journal: Scientific reports

Authors' code: HamidKarimi-Rouzbahani/Intracranial_EEG_generalisation (no license)

Status: code verified, 28 files readable, 1 match

[29300] doi:10.1038/s42003-024-06010-1 [paper, repository]

Ca²⁺ oscillation in vascular smooth muscle cells control myogenic spontaneous vasomotion and counteract post-ischemic no-reflow.

Journal: Communications biology

Authors' code: JialabEleven/Vasomotion_index (no license)

Status: code verified, 14 files readable, 2 matches

[29301] doi:10.1073/pnas.2315758121 [paper, repository]

Changes in spatial self-consciousness elicit grid cell-like representation in the entorhinal cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 7hejk (no license)

Status: code verified, 2 files readable

[29302] doi:10.1126/sciadv.adi1863 [paper, data]

Brain hypothyroidism silences the immune response of microglia in Alzheimer's disease animal model.

Journal: Science advances

Status: data only, 1 dataset cited

[29303] doi:10.1126/sciadv.adk0540 [paper, repository]

Local and global predictors of synapse elimination during motor learning.

Journal: Science advances

Authors' code: Zenodo 10108836 (CC-BY-4.0)

Status: code verified

[29304] doi:10.1152/jn.00308.2023 [paper, repository]

Organization of the human cerebral cortex estimated within individuals: networks, global topography, and function.

Journal: Journal of neurophysiology

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 10 matches

[29305] doi:10.1186/s12859-024-05732-7 [paper, repository]

NeuronBridge: an intuitive web application for neuronal morphology search across large data sets.

Journal: BMC bioinformatics

Authors' code: JaneliaSciComp/neuronbridge (BSD-3-Clause), Zenodo 10541060 (CC-BY-4.0), JaneliaSciComp/neuronbridge-services (BSD-3-Clause), Zenodo 10541063 (CC-BY-4.0), JaneliaSciComp/colormipsearch (BSD-3-Clause), Zenodo 10541073 (CC-BY-4.0), JaneliaSciComp/neuronbridge-precompute (BSD-3-Clause), Zenodo 10541087 (CC-BY-4.0), JaneliaSciComp/neuronbridge-aligners (BSD-3-Clause), Zenodo 10541088 (CC-BY-4.0), JaneliaSciComp/neuronbridge-python (BSD-3-Clause), Zenodo 10541244 (CC-BY-4.0), JaneliaSciComp/neuronbridge-vol-viewer (BSD-3-Clause), JaneliaSciComp/web-vol-viewer (BSD-3-Clause), Zenodo 10541250 (CC-BY-4.0), Zenodo 10530403 (CC-BY-4.0), Zenodo 10541255 (CC-BY-4.0), Zenodo 6762216 (other-open), janeliascicomp/vvdviewer (BSD-3-Clause)

Status: code verified, 2,151 files readable, 11 matches

[29306] doi:10.1371/journal.pcbi.1011846 [paper, repository]

Impact on backpropagation of the spatial heterogeneity of sodium channel kinetics in the axon initial segment.

Journal: PLoS computational biology

Authors' code: modeldb:267088 (no license), modeldb:139653 (no license), modeldb:123897 (no license)

Status: code verified

[29307] doi:10.1371/journal.pcbi.1011848 [paper, repository]

Ensemble dynamics and information flow deduction from whole-brain imaging data.

Journal: PLoS computational biology

Authors' code: YuToyoshima/TDE-RICA (MIT), yuichiiino1/gKDR-GMM (no license), OSF e2syt (no license), leiferlab/pumpprobe (GPL-3.0)

Status: code verified, 177 files readable, 5 matches

[29308] doi:10.1371/journal.pone.0299873 [paper, data]

Neural correlates of bilateral proprioception and adaptation with training.

Journal: PloS one

Status: data only, 1 dataset cited

[29309] doi:10.1371/journal.pone.0300075 [paper, data]

Stationary stable cross-correlation pattern and task specific deviations in unresponsive wakefulness syndrome as well as clinically healthy subjects.

Journal: PloS one

Status: data only, 1 dataset cited

[29310] doi:10.1371/journal.pone.0300552 [paper, data]

Integrating and optimizing tonabersat in standard glioblastoma therapy: A preclinical study.

Journal: PloS one

Status: data only, 1 dataset cited

[29311] doi:10.3233/adr-230171 [paper, data]

Gallic Acid Alleviates Cognitive Impairment by Promoting Neurogenesis via the GSK3β-Nrf2 Signaling Pathway in an APP/PS1 Mouse Model.

Journal: Journal of Alzheimer's disease reports

Status: data only, 1 dataset cited

[29312] doi:10.3389/fnagi.2024.1328543 [paper, data]

Age-related increase in the expression of 11β-hydroxysteroid dehydrogenase type 1 in the hippocampus of male rhesus macaques.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[29313] doi:10.3390/ejihpe14030046 [paper, data]

Duration Perception and Reading in Typically Developing Adults and Adults with Developmental Dyslexia: Implications for Assessment and Intervention.

Journal: European journal of investigation in health, psychology and education

Status: data only, 1 dataset cited

[29314] doi:10.3390/nu16060844 [paper, data]

Live and Heat-Inactivated <i>Streptococcus thermophilus</i> MN-ZLW-002 Mediate the Gut-Brain Axis, Alleviating Cognitive Dysfunction in APP/PS1 Mice.

Journal: Nutrients

Status: data only, 1 dataset cited

[29315] doi:10.3390/s24061889 [paper, repository]

EF-Net: Mental State Recognition by Analyzing Multimodal EEG-fNIRS via CNN.

Journal: Sensors (Basel, Switzerland)

Authors' code: DL4mHealth/EF-Net (no license)

Status: code verified, 6 files readable, 5 matches

[29316] doi:10.7554/elife.90993 [paper, data]

Metabolic reprogramming of cancer cells by JMJD6-mediated pre-mRNA splicing associated with therapeutic response to splicing inhibitor.

Journal: eLife

Status: data only, 3 datasets cited

[29317] doi:10.7554/elife.91129 [paper, data]

Multiple objects evoke fluctuating responses in several regions of the visual pathway.

Journal: eLife

Status: data only, 1 dataset cited

[29318] doi:10.7554/elife.91576 [paper, data]

The pelvic organs receive no parasympathetic innervation.

Journal: eLife

Status: data only, 1 dataset cited

[29319] doi:10.7554/elife.92200 [paper, repository]

Comparative neuroimaging of sex differences in human and mouse brain anatomy.

Journal: eLife

Authors' code: CoBrALab/optimized_antsMultivariateTemplateConstruction (other), elisaguma/normative-sex-differences (no license), abeaucha/NormativeSexDifferences (no license)

Status: code verified, 34 files readable, 11 matches

Thursday, 14 March 2024 (32 papers, 25 on this page)

[29320] doi:10.1007/s00221-024-06785-z [paper, repository]

Taking time to compose thoughts with prefrontal schemata.

Journal: Experimental brain research

Authors' code: OSF fk5uz (no license)

Status: code verified, 14 files readable, 2 matches

[29321] doi:10.1007/s10802-024-01190-0 [paper, repository]

Amygdala Volume is Associated with ADHD Risk and Severity Beyond Comorbidities in Adolescents: Clinical Testing of Brain Chart Reference Standards.

Journal: Research on child and adolescent psychopathology

Authors' code: predictive-clinical-neuroscience/braincharts (GPL-3.0)

Status: code verified, 11 files readable

[29322] doi:10.1016/j.isci.2024.109480 [paper]

Functional regulation of microglia by vitamin B12 alleviates ischemic stroke-induced neuroinflammation in mice.

Journal: iScience

Status: code on request

[29323] doi:10.1016/j.isci.2024.109507 [paper]

Restoring vision in adult amblyopia by enhancing plasticity through deletion of the transcriptional repressor REST.

Journal: iScience

Status: code on request

[29324] doi:10.1038/s41380-024-02493-w [paper, repository]

Neuron type-specific proteomics reveals distinct Shank3 proteoforms in iSPNs and dSPNs lead to striatal synaptopathy in Shank3B&lt;sup&gt;-/-&lt;/sup&gt; mice.

Journal: Molecular psychiatry

Authors' code: Tosfly/MolPsy2024 (no license)

Status: code verified, 2 files readable, 1 match

[29325] doi:10.1038/s41398-024-02837-8 [paper, repository]

Preliminary evidence for preserved synaptic density in late-life depression.

Journal: Translational psychiatry

Authors' code: THOMVDC/PSYPET (no license)

Status: code verified, 80 files readable, 4 matches

[29326] doi:10.1038/s41398-024-02844-9 [paper]

Resting-state amygdala subregion and precuneus connectivity provide evidence for a dimensional approach to studying social anxiety disorder.

Journal: Translational psychiatry

Status: code on request

[29327] doi:10.1038/s41398-024-02853-8 [paper]

Serum autoantibodies against α7-nicotinic receptors in subgroups of patients with bipolar disorder or schizophrenia: clinical features and link with peripheral inflammation.

Journal: Translational psychiatry

Status: code on request

[29328] doi:10.1038/s41598-024-56827-3 [paper, data]

High-performance prediction of epilepsy surgical outcomes based on the genetic neural networks and hybrid iEEG marker.

Journal: Scientific reports

Status: data only, 2 datasets cited

[29329] doi:10.1038/s42003-024-05984-2 [paper, repository]

An optrode array for spatiotemporally-precise large-scale optogenetic stimulation of deep cortical layers in non-human primates.

Journal: Communications biology

Authors' code: visCortexLabUtah/utahoptrodearray-neurophysAnalysis (no license)

Status: empty repository

[29330] doi:10.1073/pnas.2307250121 [paper, data]

SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[29331] doi:10.1073/pnas.2315248121 [paper, data]

Neuronal IL-17 controls &lt;i&gt;Caenorhabditis elegans&lt;/i&gt; developmental diapause through CEP-1/p53.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[29332] doi:10.1073/pnas.2317218121 [paper, repository]

Predation without direction selectivity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: kerschensteinerd/Predation-without-direction-selectivity---code (MIT), kerschensteinerd/Predation-without-direction-selectivity—code (no license)

Status: code verified, 19 files readable, 2 matches

[29333] doi:10.1093/braincomms/fcae052 [paper]

Peri-ictal activation of dorsomedial dorsal raphe serotonin neurons reduces mortality associated with maximal electroshock seizures.

Journal: Brain communications

Status: code on request

[29334] doi:10.1093/braincomms/fcae065 [paper, repository]

Parkinson's disease impairs cortical sensori-motor decision-making cascades.

Journal: Brain communications

Authors' code: ale-tom/MEG_LBA_PD (MIT)

Status: code verified, 5 files readable, 4 matches

[29335] doi:10.1093/braincomms/fcae092 [paper, repository]

Resting network architecture of theta oscillations reflects hyper-learning of sensorimotor information in Gilles de la Tourette syndrome.

Journal: Brain communications

Authors' code: OSF 34ptf (no license)

Status: code verified, 1 file readable, 2 matches

[29336] doi:10.1111/eva.13653 [paper, repository]

Investigating structural variant, indel and single nucleotide polymorphism differentiation between locally adapted Atlantic salmon populations.

Journal: Evolutionary applications

Authors' code: enormandeau/wgs_sample_preparation (no license), LaurieLecomte/ONT_data_processing (no license), LaurieLecomte/SNPs_indels_SR (no license), LaurieLecomte/SVs_short_reads (GNU), LaurieLecomte/SVs_long_reads (no license), LaurieLecomte/genotype_SVs_SRLR (no license), vgteam/vg (MIT), enormandeau/gawn (no license), LaurieLecomte/SVs_SNPs_indels_compgen (no license)

Status: code verified, 746 files readable, 18 matches

[29337] doi:10.1172/jci174439 [paper]

Evolution of nasal and olfactory infection characteristics of SARS-CoV-2 variants.

Journal: The Journal of clinical investigation

Status: code on request

[29338] doi:10.1186/s12916-024-03341-y [paper, data]

Improved emotion differentiation under reduced acoustic variability of speech in autism.

Journal: BMC medicine

Status: data only, 1 dataset cited

[29339] doi:10.1186/s13054-024-04859-6 [paper]

Prognostic value of near-infrared spectroscopy regional oxygen saturation and cerebrovascular reactivity index in acute traumatic neural injury: a CAnadian High-Resolution Traumatic Brain Injury (CAHR-TBI) Cohort Study.

Journal: Critical care (London, England)

Status: code on request

[29340] doi:10.1371/journal.pgen.1011190 [paper, data]

Functional labeling of individualized postsynaptic neurons using optogenetics and trans-Tango in Drosophila (FLIPSOT).

Journal: PLoS genetics

Status: data only, 1 dataset cited

[29341] doi:10.1371/journal.pone.0298320 [paper, repository]

Statistical segmentation model for accurate electrode positioning in Parkinson's deep brain stimulation based on clinical low-resolution image data and electrophysiology.

Journal: PloS one

Authors' code: IVarha/stn_segmentation (no license), IVarha/MER_lib (no license)

Status: code verified, 310 files readable, 1 match

[29342] doi:10.1371/journal.pone.0300282 [paper, data]

Development and characterization of a Gucy2d-cre mouse to selectively manipulate a subset of inhibitory spinal dorsal horn interneurons.

Journal: PloS one

Status: data only, 1 dataset cited

[29343] doi:10.3389/fncom.2024.1348138 [paper, repository]

The connectivity degree controls the difficulty in reservoir design of random boolean networks.

Journal: Frontiers in computational neuroscience

Authors' code: Zenodo 10247107 (CC-BY-4.0)

Status: code verified, 14 files readable, 1 match

[29344] doi:10.3389/fnins.2024.1271831 [paper, repository]

Combining detrended cross-correlation analysis with Riemannian geometry-based classification for improved brain-computer interface performance.

Journal: Frontiers in neuroscience

Authors' code: samuelracz/rsDCCA (GPL-3.0), Zenodo 10694 (other-open), gplepage/vegas (GPL-3.0)

Status: code verified, 77 files readable, 2 matches

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