Every paper, by date: page 130

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 130 of 200: 1 April 2024 to 22 March 2024.

Monday, 1 April 2024 (87 papers, 37 on this page)

[28897] doi:10.1111/cns.14717 [paper]

Multi-omics technologies and molecular biomarkers in brain tumor-related epilepsy.

Journal: CNS neuroscience & therapeutics

Status: data only

[28898] doi:10.1111/gbb.12879 [paper, repository]

Network-based analysis predicts interacting genetic modifiers from a meta-mapping study of spike-wave discharge in mice.

Journal: Genes, brain, and behavior

Authors' code: MahoneyLabGroup (no license)

Status: code verified

[28899] doi:10.1111/jcmm.18190 [paper]

Microglia orchestrate synaptic and neuronal stripping: Implication in neuropsychiatric lupus.

Journal: Journal of cellular and molecular medicine

Status: data only

[28900] doi:10.1111/srt.13710 [paper]

Integration analysis of single-cell transcriptome reveals specific monocyte subsets associated with melanoma brain and leptomeningeal metastasis.

Journal: Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI)

Status: data only

[28901] doi:10.1111/srt.13715 [paper, repository]

The causal relationship between atopic dermatitis and brain cancer: A bidirectional Mendelian randomization study.

Journal: Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI)

Authors' code: gwas.mrcieu.ac.uk (no license)

Status: code verified

[28902] doi:10.1117/1.nph.11.2.024308 [paper, repository]

Modulation of neuronal dynamics by sustained and activity-dependent continuous-wave near-infrared laser stimulation.

Journal: Neurophotonics

Authors' code: GNB-UAM/Garrido-Pena_Modulation-neural-dynamics-by-CW-NIR-stimulation (GPL-3.0), gnb-uam/rthybrid-for-rtxi (no license), GNB-UAM/spike_predictor (GPL-3.0), GNB-UAM/neun (BSD-3-Clause)

Status: code verified, 113 files readable, 2 matches

[28903] doi:10.1117/1.nph.11.2.024309 [paper, repository]

Three-dimensional infrared scanning: an enhanced approach for spatial registration of probes for neuroimaging.

Journal: Neurophotonics

Authors' code: datadryad.org/stash/share/gh1nsh-zpmswb73oc2yv4uvrblo54xjjgmfvb3m2xea (no license)

Status: code verified

[28904] doi:10.1117/1.nph.11.2.025003 [paper]

Two-photon imaging of excitatory and inhibitory neural response to infrared neural stimulation.

Journal: Neurophotonics

Status: code on request

[28905] doi:10.1117/1.nph.11.2.025004 [paper, data]

Parkinson's disease patients show delayed hemodynamic changes in primary motor cortex in fine motor tasks and decreased resting-state interhemispheric functional connectivity: a functional near-infrared spectroscopy study.

Journal: Neurophotonics

Status: data only, 1 dataset cited

[28906] doi:10.1117/1.nph.11.2.025005 [paper, repository]

Two-dimensional electro-optical multiphoton microscopy.

Journal: Neurophotonics

Authors' code: kerlin-lab/Farinella_2024 (GPL-2.0)

Status: code verified, 14 files readable, 2 matches

[28907] doi:10.1117/1.nph.11.2.025007 [paper]

Wavelength-swept spontaneous Raman spectroscopy system improves fiber-based collection efficiency for whole brain tissue classification.

Journal: Neurophotonics

Status: code on request

[28908] doi:10.1159/000538565 [paper, data]

Uncovering Predictors of Low Hippocampal Volume: Evidence from a Large-Scale Machine-Learning-Based Study in the UK Biobank.

Journal: Neuroepidemiology

Status: data only, 1 dataset cited

[28909] doi:10.1162/netn_a_00346 [paper, repository]

The evolution of whole-brain turbulent dynamics during recovery from traumatic brain injury.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: noechan/TBI_ON_turbu_Hopf_NC (CC-BY-NC-4.0), noechan/TBI_ON_turbu_Hopf (CC-BY-NC-4.0)

Status: code verified, 274 files readable, 14 matches

[28910] doi:10.1162/netn_a_00347 [paper, data]

Brain signal variability and executive functions across the life span.

Journal: Network neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[28911] doi:10.1162/netn_a_00349 [paper, repository]

The unique neural signature of your trip: Functional connectome fingerprints of subjective psilocybin experience.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: eamico/Psilocybin_fingerprints (MIT)

Status: code verified, 11 files readable, 6 matches

[28912] doi:10.1162/netn_a_00351 [paper, repository]

Weak coupling of neurons enables very high-frequency and ultra-fast oscillations through the interplay of synchronized phase shifts.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: gitlab.ics.muni.cz/9607/ufos (GPL-3.0)

Status: code verified, 34 files readable

[28913] doi:10.1162/netn_a_00353 [paper, repository]

Reconstructing brain functional networks through identifiability and deep learning.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: hfawaz/dl-4-tsc (GPL-3.0)

Status: code verified, 15 files readable, 1 match

[28914] doi:10.1162/netn_a_00354 [paper, repository]

Similarity in evoked responses does not imply similarity in macroscopic network states.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: CoAxLab/cofluctuating-task-connectivity (no license)

Status: code verified, 28 files readable, 6 matches

[28915] doi:10.1162/netn_a_00355 [paper, repository]

Altered topological structure of the brain white matter in maltreated children through topological data analysis.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: laplcebeltrami/maltreated (no license)

Status: code verified, 20 files readable, 9 matches

[28916] doi:10.1162/nol_a_00087 [paper, data]

Predictive Coding or Just Feature Discovery? An Alternative Account of Why Language Models Fit Brain Data.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 1 dataset cited

[28917] doi:10.1162/nol_a_00090 [paper, repository]

Dissociable Neural Mechanisms for Human Inference Processing Predicted by Static and Contextual Language Models.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: TakahisaUchida/InferenceSemanticsExperiment (no license)

Status: code verified, 22 files readable, 2 matches

[28918] doi:10.1162/nol_a_00105 [paper, repository]

Strong Prediction: Language Model Surprisal Explains Multiple N400 Effects.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF pysbc (no license), Zenodo 1443582 (CC-BY-SA-4.0)

Status: code verified, 24 files readable, 5 matches

[28919] doi:10.1162/nol_a_00116 [paper, repository]

Lexical-Semantic Content, Not Syntactic Structure, Is the Main Contributor to ANN-Brain Similarity of fMRI Responses in the Language Network.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: carina-kauf/perturbed-neural-nlp (no license)

Status: code verified, 52 files readable, 11 matches

[28920] doi:10.1162/nol_a_00118 [paper, repository]

Localizing Syntactic Composition with Left-Corner Recurrent Neural Network Grammars.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: osekilab/RNNG-fMRI (no license), dgd45125/LPPxORCxEN-CN (no license), osekilab/RNNG-EyeTrack (MIT)

Status: code verified, 36 files readable, 7 matches

[28921] doi:10.1162/nol_a_00121 [paper, repository]

Surprisal From Language Models Can Predict ERPs in Processing Predicate-Argument Structures Only if Enriched by an Agent Preference Principle.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF hbj67 (no license)

Status: code verified, 8 files readable, 10 matches

[28922] doi:10.1162/nol_a_00134 [paper, repository]

Tracking Lexical and Semantic Prediction Error Underlying the N400 Using Artificial Neural Network Models of Sentence Processing.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF jnsaf (no license)

Status: code verified, 7 files readable

[28923] doi:10.1162/nol_a_00137 [paper, repository]

Artificial Neural Network Language Models Predict Human Brain Responses to Language Even After a Developmentally Realistic Amount of Training.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: mschrimpf/neural-nlp (no license), eghbalhosseini/ann_brain_alignment (MIT)

Status: code verified, 103 files readable, 5 matches

[28924] doi:10.1167/jov.24.4.2 [paper, repository]

Metacognitive evaluation of postdecisional perceptual representations.

Journal: Journal of vision

Authors' code: mamassian/cfc (no license)

Status: code verified, 10 files readable, 2 matches

[28925] doi:10.1186/s12983-024-00531-5 [paper, repository]

Fine-grained image classification on bats using VGG16-CBAM: a practical example with 7 horseshoe bats taxa (CHIROPTERA: Rhinolophidae: Rhinolophus) from Southern China.

Journal: Frontiers in zoology

Authors' code: Zenodo 10613387 (CC-BY-4.0)

Status: code verified, 6 files readable, 6 matches

[28926] doi:10.1186/s13046-024-03019-6 [paper, data]

Tumor suppressor role of the complement inhibitor CSMD1 and its role in TNF-induced neuroinflammation in gliomas.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 1 dataset cited

[28927] doi:10.1371/journal.pbio.3002564 [paper, repository]

Visual perception of highly memorable images is mediated by a distributed network of ventral visual regions that enable a late memorability response.

Journal: PLoS biology

Authors' code: OSF nrtvx (no license)

Status: empty repository

[28928] doi:10.1371/journal.pcbi.1011183 [paper, repository]

Predictive coding networks for temporal prediction.

Journal: PLoS computational biology

Authors' code: C16Mftang/temporal-predictive-coding (MIT)

Status: code verified, 22 files readable, 6 matches

[28929] doi:10.1371/journal.pone.0301599 [paper, repository]

Predictability of intelligence and age from structural connectomes.

Journal: PloS one

Authors' code: supp:PMC10984540/pone.0301599.s005.py (no license)

Status: code verified, 1 file readable, 1 match

[28930] doi:10.1371/journal.ppat.1012087 [paper, data]

Anti-prion drugs do not improve survival in novel knock-in models of inherited prion disease.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

[28931] doi:10.14336/ad.2023.0614 [paper]

Endogenous Alpha-Synuclein is Essential for the Transfer of Pathology by Exosome-Enriched Extracellular Vesicles, Following Inoculation with Preformed Fibrils in vivo.

Journal: Aging and disease

Status: data only

[28932] doi:10.3390/jpm14040381 [paper, data]

Alteration of the Expression and Functional Activities of Myosin II Isoforms in Enlarged Hyperplastic Prostates.

Journal: Journal of personalized medicine

Status: data only, 1 dataset cited

[28933] doi:10.4239/wjd.v15.i4.735 [paper, data]

Novel insights into immune-related genes associated with type 2 diabetes mellitus-related cognitive impairment.

Journal: World journal of diabetes

Status: data only, 1 dataset cited

Sunday, 31 March 2024 (5 papers)

[28934] doi:10.1007/s00221-024-06823-w [paper, repository]

Gaze data of 4243 participants shows link between leftward and superior attention biases and age.

Journal: Experimental brain research

Authors' code: OSF 3dsr5 (no license), OSF sk4fr (no license)

Status: code verified, 3 files readable

[28935] doi:10.1038/s41598-024-57538-5 [paper]

Utilizing ultra-early continuous physiologic data to develop automated measures of clinical severity in a traumatic brain injury population.

Journal: Scientific reports

Status: code on request

[28936] doi:10.1101/2024.03.29.587339 [paper, data]

Synaptic-dependent developmental dysconnectivity in 22q11.2 deletion syndrome

Journal: bioRxiv (preprint)

Status: data only, 6 datasets cited

[28937] doi:10.3390/diagnostics14070748 [paper, repository]

Susceptibility-Weighted MRI for Predicting NF-2 Mutations and S100 Protein Expression in Meningiomas.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: Computational-Imaging-LAB/meningiomaSWI (no license)

Status: code verified, 1 file readable, 1 match

[28938] doi:10.3390/ijms25073917 [paper, data]

Targeting Group 3 Medulloblastoma by the Anti-PRUNE-1 and Anti-LSD1/KDM1A Epigenetic Molecules.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 30 March 2024 (10 papers)

[28939] doi:10.1016/j.bbih.2024.100757 [paper, data]

Cholesterol-dependent LXR transcription factor activity represses pronociceptive effects of estrogen in sensory neurons and pain induced by myelin basic protein fragments.

Journal: Brain, behavior, & immunity - health

Status: data only, 1 dataset cited

[28940] doi:10.1016/j.isci.2024.109651 [paper]

IL-1β disrupts the initiation of blood-brain barrier development by inhibiting endothelial Wnt/β-catenin signaling.

Journal: iScience

Status: code on request

[28941] doi:10.1038/s41467-024-46631-y [paper, repository]

Alignment of brain embeddings and artificial contextual embeddings in natural language points to common geometric patterns.

Journal: Nature communications

Authors' code: hassonlab/247-main (no license), hassonlab/247-plotting (no license)

Status: code verified, 30 files readable, 5 matches

[28942] doi:10.1038/s41467-024-47116-8 [paper, data]

Structural bases of inhibitory mechanism of Ca_V1.2 channel inhibitors.

Journal: Nature communications

Status: data only, 4 datasets cited

[28943] doi:10.1038/s41598-024-57549-2 [paper, data]

Identification and validation of a metabolism-related gene signature for predicting the prognosis of paediatric medulloblastoma.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28944] doi:10.1038/s41598-024-58141-4 [paper, repository]

Data-driven normative values based on generative manifold learning for quantitative MRI.

Journal: Scientific reports

Authors' code: volBrain/AssemblyNet (other)

Status: code verified, 2 files readable

[28945] doi:10.1038/s42003-024-06059-y [paper, repository]

Day length regulates gonadotrope proliferation and reproduction via an intra-pituitary pathway in the model vertebrate Oryzias latipes.

Journal: Communications biology

Authors' code: Zenodo 10729514 (CC-BY-4.0), christiaanhenkel/medakapituitary (no license)

Status: code verified, 4 files readable, 1 match

[28946] doi:10.1093/pnasnexus/pgae132 [paper, data]

Dysfunction of striatal parvalbumin interneurons drives motor stereotypies in Cntnap2-/- mouse model of autism spectrum disorders.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[28947] doi:10.3390/brainsci14040341 [paper, data]

Transcriptional Responses of Different Brain Cell Types to Oxygen Decline.

Journal: Brain sciences

Status: data only, 1 dataset cited

[28948] doi:10.3390/ijms25073872 [paper, repository]

Integrated Transcriptomic and Proteomic Study of the Mechanism of Action of the Novel Small-Molecule Positive Allosteric Modulator 1 in Targeting PAC1-R for the Treatment of D-Gal-Induced Aging Mice.

Journal: International journal of molecular sciences

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

Friday, 29 March 2024 (16 papers)

[28949] doi:10.1016/j.isci.2024.109633 [paper, data]

Gut microbiota-derived cholic acid mediates neonatal brain immaturity and white matter injury under chronic hypoxia.

Journal: iScience

Status: code on request, 1 dataset cited

[28950] doi:10.1038/s41380-024-02526-4 [paper]

Neural foundation of the diathesis-stress model: longitudinal gray matter volume changes in response to stressful life events in major depressive disorder and healthy controls.

Journal: Molecular psychiatry

Status: code on request

[28951] doi:10.1038/s41398-024-02889-w [paper, data]

Patterns of neural activity in response to threatening faces are predictive of autistic traits: modulatory effects of oxytocin receptor genotype.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[28952] doi:10.1038/s41431-024-01594-y [paper, repository]

Pathogenicity of de novo CACNA1D Ca<sup>2+</sup> channel variants predicted from sequence co-variation.

Journal: European journal of human genetics : EJHG

Authors' code: debbiemarkslab/EVcouplings (MIT)

Status: code verified, 89 files readable, 4 matches

[28953] doi:10.1038/s41467-024-46693-y [paper, repository]

Projective light-sheet microscopy with flexible parameter selection.

Journal: Nature communications

Authors' code: advancedimagingutsw/manuscripts (BSD-3-Clause)

Status: code verified, 62 files readable, 5 matches

[28954] doi:10.1038/s41467-024-47054-5 [paper, repository]

Transient expression of the neuropeptide galanin modulates peripheral‑to‑central connectivity in the somatosensory thalamus during whisker development in mice.

Journal: Nature communications

Authors' code: harkany-lab.github.io/hevesi_2023 (no license), figshare 22665352 (CC-BY-4.0)

Status: code verified, 30 files readable, 6 matches

[28955] doi:10.1038/s41526-024-00387-3 [paper]

Effect of 60 days of head down tilt bed rest on amplitude and phase of rhythms in physiology and sleep in men.

Journal: NPJ microgravity

Status: code on request

[28956] doi:10.1038/s42003-024-06029-4 [paper]

Learning to stand with sensorimotor delays generalizes across directions and from hand to leg effectors.

Journal: Communications biology

Status: code on request

[28957] doi:10.1073/pnas.2305297121 [paper, repository]

Causal connectivity measures for pulse-output network reconstruction: Analysis and applications.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: neoneuron/causal4reconstruction (no license)

Status: code verified, 74 files readable, 3 matches

[28958] doi:10.1073/pnas.2318521121 [paper, repository]

Brain mechanism of foraging: Reward-dependent synaptic plasticity versus neural integration of values.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ulisespereira/foraging-integrator-vs-synaptic (no license), ulisespereira/foragingmodels (no license)

Status: code verified, 14 files readable, 2 matches

[28959] doi:10.1101/2024.03.25.586664 [paper, data]

Functional-based parcellation of the mouse prefrontal cortex for network perturbation analysis

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[28960] doi:10.1186/s11658-024-00563-z [paper, repository]

Transcriptional and metabolic effects of aspartate-glutamate carrier isoform 1 (AGC1) downregulation in mouse oligodendrocyte precursor cells (OPCs).

Journal: Cellular & molecular biology letters

Authors' code: Nbalb/agc1_OliNeu (MIT)

Status: code verified, 17 files readable, 5 matches

[28961] doi:10.1371/journal.pone.0293856 [paper, repository]

Fine-tuning TrailMap: The utility of transfer learning to improve the performance of deep learning in axon segmentation of light-sheet microscopy images.

Journal: PloS one

Authors' code: AlbertPun/TRAILMAP (MIT), pnnl/brain_ohsu (BSD-2-Clause)

Status: code verified, 34 files readable

[28962] doi:10.1371/journal.pone.0298105 [paper, repository]

Biophysical modeling of the whole-cell dynamics of C. elegans motor and interneurons families.

Journal: PloS one

Authors' code: martinanicoletti92/CelegansInterMotorNeuronsModels (no license)

Status: code verified, 47 files readable

[28963] doi:10.1371/journal.pone.0298235 [paper, data]

Culture, prefrontal volume, and memory.

Journal: PloS one

Status: data only, 1 dataset cited

[28964] doi:10.3390/brainsci14040335 [paper, data]

A Comparative Study on Feature Extraction Techniques for the Discrimination of Frontotemporal Dementia and Alzheimer's Disease with Electroencephalography in Resting-State Adults.

Journal: Brain sciences

Status: data only, 2 datasets cited

Thursday, 28 March 2024 (41 papers)

[28965] doi:10.1016/j.isci.2024.109585 [paper, data]

Craniofacial chondrogenesis in organoids from human stem cell-derived neural crest cells.

Journal: iScience

Status: data only, 2 datasets cited

[28966] doi:10.1016/j.isci.2024.109617 [paper]

Effects of long-term closed and socially isolating spaceflight analog environment on default mode network connectivity as indicated by fMRI.

Journal: iScience

Status: code on request

[28967] doi:10.1016/j.isci.2024.109628 [paper]

Sustained type I interferon signaling after human immunodeficiency virus type 1 infection of human iPSC derived microglia and cerebral organoids.

Journal: iScience

Status: code on request

[28968] doi:10.1016/j.isci.2024.109635 [paper, repository]

RNA velocity prediction via neural ordinary differential equation.

Journal: iScience

Authors' code: melobio/SymVelo (no license), satijalab/seurat (other)

Status: code verified, 184 files readable, 12 matches

[28969] doi:10.1016/j.isci.2024.109638 [paper]

The regulation of enteric neuron connectivity by semaphorin 5A is affected by the autism-associated S956G missense mutation.

Journal: iScience

Status: code on request

[28970] doi:10.1016/j.isci.2024.109642 [paper]

Long-lived proteins and DNA as candidate predictive biomarkers for tissue associated diseases.

Journal: iScience

Status: code on request

[28971] doi:10.1016/j.stemcr.2024.02.012 [paper]

Conclusive demonstration of iatrogenic Alzheimer's disease transmission in a model of stem cell transplantation.

Journal: Stem cell reports

Status: code on request

[28972] doi:10.1016/j.xcrm.2024.101482 [paper, repository]

Real-time glioblastoma tumor microenvironment assessment by SpiderMass for improved patient management.

Journal: Cell reports. Medicine

Authors' code: waters.com/waters/fr_fr (no license), Zenodo 10656851 (CC-BY-4.0), Zenodo 10656830 (CC-BY-4.0), yanisZirem/Pipeline_SpiderMass1D (no license), yanisZirem/Pipeline_SpiderMass2D (no license)

Status: code verified, 4 files readable, 4 matches

[28973] doi:10.1038/s41467-024-46529-9 [paper, repository]

Remodeling of the postsynaptic proteome in male mice and marmosets during synapse development.

Journal: Nature communications

Authors' code: Takeshi-Kaizuka/Kaizuka_Proteomics_2024 (MIT), Zenodo 10527074 (CC-BY-4.0), Zenodo 10527073 (CC-BY-4.0)

Status: code verified, 4 files readable

[28974] doi:10.1038/s41467-024-46707-9 [paper, repository]

A midbrain GABAergic circuit constrains wakefulness in a mouse model of stress.

Journal: Nature communications

Authors' code: shuanchengren/open-filed-analysis (no license)

Status: code verified, 3 files readable

[28975] doi:10.1038/s41467-024-47016-x [paper, repository]

Pheromone-based communication influences the production of somatic extracellular vesicles in C. elegans.

Journal: Nature communications

Authors' code: Zenodo 10718535 (CC-BY-4.0)

Status: code verified, 2 files readable

[28976] doi:10.1038/s41467-024-47042-9 [paper, data]

Condensin-mediated restriction of retrotransposable elements facilitates brain development in Drosophila melanogaster.

Journal: Nature communications

Status: data only, 1 dataset cited

[28977] doi:10.1038/s41598-024-56328-3 [paper, repository]

Diving into the proteomic atlas of SARS-CoV-2 infected cells.

Journal: Scientific reports

Authors' code: Zenodo 8074722 (other-open), guireiso/omicscope (MIT)

Status: code verified, 73 files readable, 2 matches

[28978] doi:10.1038/s41598-024-56989-0 [paper, data]

Gut microbiota profile in CDKL5 deficiency disorder patients.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28979] doi:10.1038/s41598-024-57650-6 [paper, repository]

Lusca: FIJI (ImageJ) based tool for automated morphological analysis of cellular and subcellular structures.

Journal: Scientific reports

Authors' code: MediSciScripter/Lusca (no license)

Status: empty repository, 1 file readable

[28980] doi:10.1038/s41698-024-00566-1 [paper, data]

ELAVL2 loss promotes aggressive mesenchymal transition in glioblastoma.

Journal: NPJ precision oncology

Status: code on request, 1 dataset cited

[28981] doi:10.1038/s42003-024-06045-4 [paper]

A semi-automatic method for extracting mitochondrial cristae characteristics from 3D focused ion beam scanning electron microscopy data.

Journal: Communications biology

Status: code on request

[28982] doi:10.1038/s42003-024-06065-0 [paper, data]

Kir4.1 channels contribute to astrocyte CO<sub>2</sub>/H<sup>+</sup>-sensitivity and the drive to breathe.

Journal: Communications biology

Status: data only, 1 dataset cited

[28983] doi:10.1038/s42003-024-06071-2 [paper, repository]

The nuclear import receptor Kapβ2 modifies neurotoxicity mediated by poly(GR) in C9orf72-linked ALS/FTD.

Journal: Communications biology

Authors' code: nathanskene/als_human_ewce (no license), doi:10.5061/dryad.v41ns1s4f (no license), Zenodo 10794415 (MIT)

Status: code verified, 13 files readable

[28984] doi:10.1038/s43856-024-00486-y [paper, repository]

Accurate and interpretable drug-drug interaction prediction enabled by knowledge subgraph learning.

Journal: Communications medicine

Authors' code: LARS-research/KnowDDI (no license), Zenodo 10285646 (CC-BY-4.0), galaxysunwen/MSTE-master (no license), xzenglab/KGNN (MIT)

Status: code verified, 67 files readable, 6 matches

[28985] doi:10.1073/pnas.2319313121 [paper, repository]

Optimal reaching subject to computational and physical constraints reveals structure of the sensorimotor control system.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ncsl/Optimal-reaching (MIT)

Status: code verified, 4 files readable, 1 match

[28986] doi:10.1073/pnas.2401959121 [paper, repository]

Brain decoding of spontaneous thought: Predictive modeling of self-relevance and valence using personal narratives.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10039368 (CC-BY-4.0), canlab/CanlabCore (GPL-2.0), cocoanlab/cocoanCORE (GPL-3.0), Zenodo 10039369 (CC-BY-4.0)

Status: code verified, 2,131 files readable, 10 matches

[28987] doi:10.1093/braincomms/fcae101 [paper, repository]

Morphological profiling in human neural progenitor cells classifies hits in a pilot drug screen for Alzheimer's disease.

Journal: Brain communications

Authors' code: CarragherLab/cptools2 (MIT)

Status: code verified, 26 files readable

[28988] doi:10.1117/1.nph.11.2.024206 [paper]

Method for optimizing imaging parameters to record neuronal and cellular activity at depth with bioluminescence.

Journal: Neurophotonics

Status: code on request

[28989] doi:10.1162/imag_a_00119 [paper, repository]

Towards a more robust non-invasive assessment of functional connectivity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: schoffelen/shared_subsampling (GPL-3.0)

Status: code verified, 181 files readable, 5 matches

[28990] doi:10.1162/imag_a_00120 [paper]

Alpha-180 spin-echo-based line-scanning method for high-resolution laminar-specific fMRI in animals.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[28991] doi:10.1186/s40168-024-01755-7 [paper, data]

The gut metabolite indole-3-propionic acid activates ERK1 to restore social function and hippocampal inhibitory synaptic transmission in a 16p11.2 microdeletion mouse model.

Journal: Microbiome

Status: data only, 5 datasets cited

[28992] doi:10.1371/journal.pcbi.1011943 [paper, repository]

Emergence of Emotion Selectivity in Deep Neural Networks Trained to Recognize Visual Objects.

Journal: PLoS computational biology

Authors' code: Zenodo 10720551 (CC-BY-4.0)

Status: code verified, 6 files readable

[28993] doi:10.1523/eneuro.0259-23.2024 [paper, repository]

Spectral Slope and Lempel-Ziv Complexity as Robust Markers of Brain States during Sleep and Wakefulness.

Journal: eNeuro

Authors' code: OSF qgpw4 (no license)

Status: code verified, 22 files readable, 6 matches

[28994] doi:10.3389/fcell.2024.1371568 [paper, data]

Timing dependent neuronal migration is regulated by Cdk5-mediated phosphorylation of JIP1.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[28995] doi:10.3389/fnimg.2024.1359589 [paper, repository]

Down-sampling in diffusion MRI: a bundle-specific DTI and NODDI study.

Journal: Frontiers in neuroimaging

Authors' code: scilus/scilpy (MIT)

Status: code verified, 601 files readable, 1 match

[28996] doi:10.3389/fnins.2024.1309594 [paper, data]

Graph neural network based on brain inspired forward-forward mechanism for motor imagery classification in brain-computer interfaces.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[28997] doi:10.3389/fphar.2024.1340691 [paper, data]

Early life phenobarbital exposure dysregulates the hippocampal transcriptome.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[28998] doi:10.3390/biom14040411 [paper, repository]

Mitochondrial and Nuclear DNA Variants in Amyotrophic Lateral Sclerosis: Enrichment in the Mitochondrial Control Region and Sirtuin Pathway Genes in Spinal Cord Tissue.

Journal: Biomolecules

Authors' code: BioinfoUNIBA/MitoVarFilter (no license), mitoNGS/mtoolnote (MIT)

Status: code verified, 24 files readable, 3 matches

[28999] doi:10.3390/brainsci14040325 [paper, repository]

Hierarchical Principal Components for Data-Driven Multiresolution fMRI Analyses.

Journal: Brain sciences

Authors' code: koreywylie/SimTB_hierarchies (no license), koreywylie/PCA.Rachakonda2016 (no license), koreywylie/HierarchicalPrinCompAnalyses (no license)

Status: code verified, 14 files readable, 7 matches

[29000] doi:10.3390/genes15040425 [paper, data]

Building Minimized Epigenetic Clock by iPlex MassARRAY Platform.

Journal: Genes

Status: data only, 1 dataset cited

[29001] doi:10.3390/jimaging10040080 [paper, repository]

Magnetoencephalography Atlas Viewer for Dipole Localization and Viewing.

Journal: Journal of imaging

Authors' code: git.biohpc.swmed.edu/s190502/mav (no license)

Status: code verified

[29002] doi:10.7554/elife.88889 [paper, repository]

The importance of individual beliefs in assessing treatment efficacy.

Journal: eLife

Authors' code: OSF rztxu (no license)

Status: code verified, 4 files readable, 1 match

[29003] doi:10.7554/elife.89356 [paper, repository]

Task-anchored grid cell firing is selectively associated with successful path integration-dependent behaviour.

Journal: eLife

Authors' code: MattNolanLab/eLife_Grid_anchoring_2024 (MIT), Zenodo 10698051 (CC-BY-4.0)

Status: code verified, 63 files readable, 13 matches

[29004] doi:10.7554/elife.90583 [paper, data]

Body size as a metric for the affordable world.

Journal: eLife

Status: data only, 1 dataset cited

[29005] doi:10.7554/elife.91044 [paper, repository]

Neurophysiological trajectories in Alzheimer's disease progression.

Journal: eLife

Authors' code: OSF pd4h9 (no license)

Status: code verified, 133 files readable, 12 matches

Wednesday, 27 March 2024 (47 papers)

[29006] doi:10.1007/s11481-024-10111-3 [paper, data]

IL-6 Enhances the Activation of PI3K-AKT/mTOR-GSK-3β by Upregulating GRPR in Hippocampal Neurons of Autistic Mice.

Journal: Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology

Status: data only, 1 dataset cited

[29007] doi:10.1007/s11548-024-03096-0 [paper, repository]

XRelevanceCAM: towards explainable tissue characterization with improved localisation of pathological structures in probe-based confocal laser endomicroscopy.

Journal: International journal of computer assisted radiology and surgery

Authors' code: cvrs-hamlyn/xrelevance-cam (no license)

Status: code verified, 6 files readable, 3 matches

[29008] doi:10.1016/j.celrep.2024.113993 [paper]

Topographical and cell type-specific connectivity of rostral and caudal forelimb corticospinal neuron populations.

Journal: Cell reports

Status: code on request

[29009] doi:10.1016/j.csbj.2024.03.014 [paper, repository]

EM-COGLOAD: An investigation into age and cognitive load detection using eye tracking and deep learning.

Journal: Computational and structural biotechnology journal

Authors' code: OSF zjtdq (no license)

Status: empty repository

[29010] doi:10.1016/j.dib.2024.110365 [paper, data]

Data on electroconvulsive seizure in mice, effects of anesthesia on immediate early gene expression.

Journal: Data in brief

Status: data only, 2 datasets cited

[29011] doi:10.1016/j.ebiom.2024.105061 [paper, repository]

A growth chart of brain function from infancy to adolescence based on EEG.

Journal: EBioMedicine

Authors' code: brain-modelling-group/functional-brain-age (no license)

Status: code verified, 30 files readable, 10 matches

[29012] doi:10.1016/j.heliyon.2024.e28825 [paper, repository]

The maternal-fetal neurodevelopmental groundings of preterm birth risk.

Journal: Heliyon

Authors' code: CaesarXVII/Fetal_brain_connectivity_and_preterm_birth_risk (no license)

Status: code verified, 5 files readable, 1 match

[29013] doi:10.1016/j.isci.2024.109582 [paper]

Epileptiform discharges in the anterior thalamus of epilepsy patients.

Journal: iScience

Status: code on request

[29014] doi:10.1016/j.isci.2024.109583 [paper, data]

The single D380 amino acid substitution increases pneumolysin cytotoxicity toward neuronal cells.

Journal: iScience

Status: code on request, 2 datasets cited

[29015] doi:10.1016/j.isci.2024.109586 [paper, repository]

Attention to cardiac sensations enhances the heartbeat-evoked potential during exhalation.

Journal: iScience

Authors' code: azaccaro90/hep_attention_respiration_hct (no license)

Status: code verified, 9 files readable, 4 matches

[29016] doi:10.1016/j.isci.2024.109587 [paper, data]

A dopamine D1-like receptor-specific agonist improves the survival of septic mice.

Journal: iScience

Status: data only, 1 dataset cited

[29017] doi:10.1016/j.isci.2024.109600 [paper]

Spatiotemporal dynamics exhibited by horizontal basal cells reveal a pro-neurogenic pathway during injury-induced olfactory epithelium regeneration.

Journal: iScience

Status: code on request

[29018] doi:10.1016/j.isci.2024.109601 [paper, repository]

Genomic analysis of human brain metastases treated with stereotactic radiosurgery reveals unique signature based on treatment failure.

Journal: iScience

Authors' code: wiscstatman/allez (no license), deweylab/RSEM (GPL-3.0), cccnrc/plot-VCF (MIT), chenhcs/DIFFUSE (MIT)

Status: code verified, 444 files readable

[29019] doi:10.1016/j.xpro.2024.102978 [paper, repository]

Protocol for predicting multivariate change of brain patterns using model-informed fMRI activations.

Journal: STAR protocols

Authors' code: Zenodo 8015561 (CC-BY-4.0)

Status: code verified, 293 files readable, 3 matches

[29020] doi:10.1021/acs.jmedchem.4c00139 [paper, data]

Model of P-Glycoprotein Ligand Binding and Validation with Efflux Substrate Matched Pairs.

Journal: Journal of medicinal chemistry

Status: data only, 6 datasets cited

[29021] doi:10.1038/s41467-024-46344-2 [paper, repository]

The effects of genetic and modifiable risk factors on brain regions vulnerable to ageing and disease.

Journal: Nature communications

Authors' code: open.win.ox.ac.uk/pages/douaud (no license)

Status: code found, still to be checked

[29022] doi:10.1038/s41467-024-46936-y [paper, repository]

Replication study on the role of dopamine-dependent prefrontal reactivations in human extinction memory retrieval.

Journal: Nature communications

Authors' code: OSF x64cn (no license), Zenodo 8353754 (CC-BY-4.0)

Status: code verified, 1 file readable

[29023] doi:10.1038/s41467-024-46972-8 [paper, data]

Synaptically-targeted long non-coding RNA SLAMR promotes structural plasticity by increasing translation and CaMKII activity.

Journal: Nature communications

Status: data only, 1 dataset cited

[29024] doi:10.1038/s41586-024-07220-7 [paper, repository]

Formation of memory assemblies through the DNA-sensing TLR9 pathway.

Journal: Nature

Authors' code: RadulovicLab/Nature-2024 (no license)

Status: code verified, 2 files readable, 2 matches

[29025] doi:10.1038/s41586-024-07232-3 [paper, data]

A brainstem-hypothalamus neuronal circuit reduces feeding upon heat exposure.

Journal: Nature

Status: data only, 1 dataset cited

[29026] doi:10.1038/s41586-024-07237-y [paper, data]

CGRP sensory neurons promote tissue healing via neutrophils and macrophages.

Journal: Nature

Status: data only, 1 dataset cited

[29027] doi:10.1038/s41586-024-07239-w [paper, repository]

Single-cell multiplex chromatin and RNA interactions in ageing human brain.

Journal: Nature

Authors' code: Zhong-Lab-UCSD/MUSIC-docker (CC-BY-4.0), Zhong-Lab-UCSD/MUSIC-tools (no license)

Status: code verified, 24 files readable, 12 matches

[29028] doi:10.1038/s41593-024-01600-y [paper, data]

Xenografted human microglia display diverse transcriptomic states in response to Alzheimer's disease-related amyloid-β pathology.

Journal: Nature neuroscience

Status: code on request, 3 datasets cited

[29029] doi:10.1038/s41597-024-03146-x [paper, repository]

The extrachromosomal circular DNA atlas of aged and young mouse brains.

Journal: Scientific data

Authors' code: iprada/Circle-Map (MIT), figshare 24086121 (CC-BY-4.0), XiaoningHong/MouseBrain_ScientificData (MIT)

Status: code verified, 27 files readable, 6 matches

[29030] doi:10.1038/s41598-024-56686-y [paper]

Electrical stimulation of chicken embryo development supports the Inside story scenario of human development and evolution.

Journal: Scientific reports

Status: code on request

[29031] doi:10.1038/s41598-024-57572-3 [paper, repository]

CVRmap-a complete cerebrovascular reactivity mapping post-processing BIDS toolbox.

Journal: Scientific reports

Authors' code: ln2t/cvrmap (MIT), ln2t/cvrmap-paper (no license)

Status: code verified, 20 files readable, 6 matches

[29032] doi:10.1038/s41598-024-57687-7 [paper, data]

Mindfulness meditation modulates stress-eating and its neural correlates.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29033] doi:10.1038/s41598-024-57918-x [paper, repository]

Single-nucleus RNA velocity reveals critical synaptic and cell-cycle dysregulations in neuropathologically confirmed Alzheimer's disease.

Journal: Scientific reports

Authors' code: scvelo.readthedocs.io (no license), velovi.readthedocs.io (no license), neuropm-lab.com/other-pipelines (no license)

Status: code verified

[29034] doi:10.1038/s41598-024-57970-7 [paper, data]

Employing deep learning and transfer learning for accurate brain tumor detection.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29035] doi:10.1038/s41598-024-58086-8 [paper, repository]

Non-invasive perfusion MR imaging of the human brain via breath-holding.

Journal: Scientific reports

Authors' code: JSchul1998/bhDSC_Scripts (no license)

Status: code verified, 4 files readable

[29036] doi:10.1038/s44271-024-00071-y [paper, repository]

The online metacognitive control of decisions.

Journal: Communications psychology

Authors' code: owncloud.icm-institute.org/index.php/s (no license), mbb-team.github.io/vba-toolbox (no license)

Status: code verified

[29037] doi:10.1039/d3dd00165b [paper, repository]

Extended similarity methods for efficient data mining in imaging mass spectrometry.

Journal: Digital discovery

Authors' code: ramirandaq/MultipleComparisons (GPL-3.0), Prentice-lab-UF/Extended-Similarity-Indices-pyIMS (no license)

Status: code verified, 47 files readable, 7 matches

[29038] doi:10.1073/pnas.2318528121 [paper, data]

Causal functional maps of brain rhythms in working memory.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[29039] doi:10.1098/rsob.230438 [paper, repository]

The subapical labial sensory organ of spotted lanternfly <i>Lycorma delicatula</i>.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.7109009 (no license)

Status: code found, still to be checked

[29040] doi:10.1101/2024.03.22.586054 [paper, data]

Directionally Biased Neuronal Responses to Pitch-Axis Vestibular Stimulation in Larval Zebrafish Compared to Roll-Axis Responses

Journal: bioRxiv (preprint)

Status: code on request, 1 dataset cited

[29041] doi:10.1101/2024.03.23.586414 [paper, data]

A functional overlap between evidence accumulation, confidence, and changes of mind in the pre-supplementary motor area and insula

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[29042] doi:10.1126/sciadv.adn3426 [paper, repository]

Virtual formalin-fixed and paraffin-embedded staining of fresh brain tissue via stimulated Raman CycleGAN model.

Journal: Science advances

Authors' code: Zenodo 10622491 (CC-BY-4.0), zhijie-liu/virtual-staining (no license)

Status: code verified, 6 files readable

[29043] doi:10.1126/sciadv.adn9998 [paper, repository]

Multiple parallel cell lineages in the developing mammalian cerebral cortex.

Journal: Science advances

Authors' code: mayer-lab/TrackerSeq (MIT)

Status: code verified, 37 files readable, 13 matches

[29044] doi:10.1371/journal.pone.0300673 [paper, repository]

Effects of cleft lip on visual scanning and neural processing of infant faces.

Journal: PloS one

Authors' code: OSF 6zm9d (no license)

Status: code verified, 1 file readable

[29045] doi:10.1523/eneuro.0399-23.2024 [paper, repository]

Synchrony in Networks of Type 2 Interneurons Is More Robust to Noise with Hyperpolarizing Inhibition Compared to Shunting Inhibition in Both the Stochastic Population Oscillator and the Coupled Oscillator Regimes.

Journal: eNeuro

Authors' code: RomanB22/NoisyInhibitoryNetwork (no license)

Status: code verified, 84 files readable, 13 matches

[29046] doi:10.1523/eneuro.0418-23.2023 [paper, repository]

Structure-Function Interactions in the Hippocampus and Prefrontal Cortex Are Associated with Episodic Memory in Healthy Aging.

Journal: eNeuro

Authors' code: OSF yhzxe (no license)

Status: code verified, 16 files readable, 5 matches

[29047] doi:10.3389/fnsys.2024.1269190 [paper, repository]

Exploring Flip Flop memories and beyond: training Recurrent Neural Networks with key insights.

Journal: Frontiers in systems neuroscience

Authors' code: katejarne/3-bit-ff-tutorial (no license)

Status: code verified, 7 files readable, 3 matches

[29048] doi:10.3389/fnut.2024.1367086 [paper, data]

Dietary vitamin A modifies the gut microbiota and intestinal tissue transcriptome, impacting intestinal permeability and the release of inflammatory factors, thereby influencing Aβ pathology.

Journal: Frontiers in nutrition

Status: data only, 1 dataset cited

[29049] doi:10.3390/bioengineering11040324 [paper, data]

A Novel Metric for Alzheimer's Disease Detection Based on Brain Complexity Analysis via Multiscale Fuzzy Entropy.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[29050] doi:10.3390/brainsci14040319 [paper]

Improving Neuroplasticity through Robotic Verticalization Training in Patients with Minimally Conscious State: A Retrospective Study.

Journal: Brain sciences

Status: code on request

[29051] doi:10.7554/elife.89792 [paper, data]

Kit Ligand and Kit receptor tyrosine kinase sustain synaptic inhibition of Purkinje cells.

Journal: eLife

Status: data only, 1 dataset cited

[29052] doi:10.7554/elife.90632 [paper, repository]

Synaptotagmin 7 docks synaptic vesicles to support facilitation and Doc2α-triggered asynchronous release.

Journal: eLife

Authors' code: shigekiwatanabe/SynapsEM (no license)

Status: code verified, 52 files readable, 2 matches

Tuesday, 26 March 2024 (35 papers)

[29053] doi:10.1002/2211-5463.13796 [paper, repository]

Signature reversion of three disease-associated gene signatures prioritizes cancer drug repurposing candidates.

Journal: FEBS open bio

Authors' code: Zenodo 7661401 (other-open), greenelab/multi-plier (BSD), Zenodo 7662005 (MIT), lasseignelab/cancer_signature_reversion (MIT)

Status: code verified, 176 files readable, 25 matches

[29054] doi:10.1002/ame2.12400 [paper, repository]

Oxygen is an essential gasotransmitter directly sensed via protein gasoreceptors.

Journal: Animal models and experimental medicine

Authors' code: Zenodo 10668718 (CC-BY-4.0)

Status: empty repository

[29055] doi:10.1007/s10928-024-09906-x [paper, repository]

On inductive biases for the robust and interpretable prediction of drug concentrations using deep compartment models.

Journal: Journal of pharmacokinetics and pharmacodynamics

Authors' code: Janssena/dcm-constrained (no license)

Status: code verified, 10 files readable, 5 matches

[29056] doi:10.1016/j.heliyon.2024.e28632 [paper, data]

<i>Nocardia farcinica</i> brain abscess with torque teno virus co-infection: A case report.

Journal: Heliyon

Status: data only, 1 dataset cited

[29057] doi:10.1016/j.isci.2024.109565 [paper]

Maintenance of color memoranda in activity-quiescent working memory states: Evidence from impulse perturbation.

Journal: iScience

Status: code on request

[29058] doi:10.1016/j.isci.2024.109571 [paper]

Graph reasoning method enhanced by relational transformers and knowledge distillation for drug-related side effect prediction.

Journal: iScience

Status: code on request

[29059] doi:10.1016/j.isci.2024.109577 [paper, repository]

Necl-1/CADM3 regulates cone synapse formation in the mouse retina.

Journal: iScience

Authors' code: singlecell.broadinstitute.org/single_cell/study (no license)

Status: code verified

[29060] doi:10.1021/acsomega.3c10459 [paper, repository]

Combining Deep Learning and Structural Modeling to Identify Potential Acetylcholinesterase Inhibitors from <i>Hericium erinaceus</i>.

Journal: ACS omega

Authors' code: pribnowbox/virtual-screening-of-AChE-inhibitors (no license)

Status: code verified, 4 files readable, 3 matches

[29061] doi:10.1038/s41380-024-02479-8 [paper, data]

Transcriptomic dysregulation and autistic-like behaviors in Kmt2c haploinsufficient mice rescued by an LSD1 inhibitor.

Journal: Molecular psychiatry

Status: code on request, 1 dataset cited

[29062] doi:10.1038/s41380-024-02535-3 [paper]

Chronometric TMS-fMRI of personalized left dorsolateral prefrontal target reveals state-dependency of subgenual anterior cingulate cortex effects.

Journal: Molecular psychiatry

Status: code on request

[29063] doi:10.1038/s41398-024-02862-7 [paper]

Alterations in subcortical magnetic susceptibility and disease-specific relationship with brain volume in major depressive disorder and schizophrenia.

Journal: Translational psychiatry

Status: code on request

[29064] doi:10.1038/s41398-024-02881-4 [paper, data]

Associations between antipsychotics-induced weight gain and brain networks of impulsivity.

Journal: Translational psychiatry

Status: data only, 2 datasets cited

[29065] doi:10.1038/s41421-023-00642-z [paper, repository]

Fast and flexible profiling of chromatin accessibility and total RNA expression in single nuclei using Microwell-seq3.

Journal: Cell discovery

Authors' code: AritaZ-hang/MW3 (no license)

Status: code verified, 45 files readable, 24 matches

[29066] doi:10.1038/s41467-024-46013-4 [paper, data]

Intracortical recordings reveal vision-to-action cortical gradients driving human exogenous attention.

Journal: Nature communications

Status: code on request, 1 dataset cited

[29067] doi:10.1038/s41467-024-46784-w [paper, repository]

Using rare genetic mutations to revisit structural brain asymmetry.

Journal: Nature communications

Authors' code: labjacquemont/MIND-GENESPARALLELCNV (no license), Nealelab/UK_Biobank_GWAS (no license), dblabs-mcgill-mila/CNV-asymmetry (MIT)

Status: code verified, 75 files readable, 18 matches

[29068] doi:10.1038/s41467-024-46817-4 [paper, repository]

Abundant pleiotropy across neuroimaging modalities identified through a multivariate genome-wide association study.

Journal: Nature communications

Authors' code: EPTissink/MOSTest-multimodal (no license), Zenodo 10698933 (CC-BY-4.0)

Status: code verified, 95 files readable, 23 matches

[29069] doi:10.1038/s41467-024-47027-8 [paper, repository]

Spatial transcriptomics reveals molecular dysfunction associated with cortical Lewy pathology.

Journal: Nature communications

Authors' code: Zenodo 10650925 (CC-BY-4.0), Goralsth/Spatial-transcriptomics-reveals-molecular-dysfunction-associated-with-cortical-Lewy-pathology (no license), Zenodo 10732492 (CC-BY-4.0), DaniellaDeWeerd/NutilToUsable (GPL-3.0), DaniellaDeWeerd/ObjectAndRegionSum (GPL-3.0), Zenodo 10626455 (CC-BY-4.0)

Status: code verified, 24 files readable, 10 matches

[29070] doi:10.1038/s41467-024-47066-1 [paper, data]

Ultrastructure of human brain tissue vitrified from autopsy revealed by cryo-ET with cryo-plasma FIB milling.

Journal: Nature communications

Status: data only, 2 datasets cited

[29071] doi:10.1038/s41593-024-01596-5 [paper, repository]

A precision functional atlas of personalized network topography and probabilities.

Journal: Nature neuroscience

Authors' code: DCAN-Labs/abcd-hcp-pipeline (BSD-3-Clause), MidnightScanClub/MSCcodebase (no license), DCAN-Labs/cifti-connectivity (BSD-3-Clause), DCAN-Labs/compare_matrices_to_assign_networks (other), mapequation.org (no license), OSF 7xn4f (no license), OSF psv5m (no license)

Status: code verified, 657 files readable, 18 matches

[29072] doi:10.1038/s41598-024-53750-5 [paper]

A systematic review and meta-analysis of socio-cognitive impairments in multiple sclerosis.

Journal: Scientific reports

Status: code on request

[29073] doi:10.1038/s41598-024-55726-x [paper]

Psilocybin enhances insightfulness in meditation: a perspective on the global topology of brain imaging during meditation.

Journal: Scientific reports

Status: code on request

[29074] doi:10.1038/s41598-024-57104-z [paper, repository]

Interrogation of the human cortical peptidome uncovers cell-type specific signatures of cognitive resilience against Alzheimer's disease.

Journal: Scientific reports

Authors' code: MScNeuroscienceStudentOxford/PeptidomicMSCode (no license)

Status: code verified, 4 files readable, 5 matches

[29075] doi:10.1073/pnas.2321430121 [paper, repository]

Feedforward and feedback mechanisms cooperatively regulate rapid experience-dependent response adaptation in a single thermosensory neuron type.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: SenguptaLab/Hill2023Code (no license), Zenodo 10573704 (CC-BY-4.0)

Status: code verified, 63 files readable

[29076] doi:10.1093/nsr/nwae109 [paper, repository]

NEATmap: a high-efficiency deep learning approach for whole mouse brain neuronal activity trace mapping.

Journal: National science review

Authors' code: mesobrain/NEATmap_code (GPL-3.0), mesobrain/NEATmap_software (GPL-3.0)

Status: code verified, 81 files readable, 13 matches

[29077] doi:10.1162/opmi_a_00131 [paper, data]

Preliminary Evidence for Global Properties in Human Listeners During Natural Auditory Scene Perception.

Journal: Open mind : discoveries in cognitive science

Status: data only, 2 datasets cited

[29078] doi:10.1186/s13293-024-00604-4 [paper, repository]

Menarche, pubertal timing and the brain: female-specific patterns of brain maturation beyond age-related development.

Journal: Biology of sex differences

Authors' code: NGottschewsky/menarche_classification (no license)

Status: code verified, 11 files readable, 8 matches

[29079] doi:10.1371/journal.pone.0297996 [paper, data]

A deeply supervised adaptable neural network for diagnosis and classification of Alzheimer's severity using multitask feature extraction.

Journal: PloS one

Status: data only, 1 dataset cited

[29080] doi:10.1523/eneuro.0519-23.2024 [paper, data]

Location- and Object-Based Representational Mechanisms Account for Bilateral Field Advantage in Multiple-Object Tracking.

Journal: eNeuro

Status: data only, 1 dataset cited

[29081] doi:10.3389/fmicb.2024.1331130 [paper, data]

Microbiota profiling reveals alteration of gut microbial neurotransmitters in a mouse model of autism-associated 16p11.2 microduplication.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[29082] doi:10.3389/fnetp.2024.1362778 [paper, repository]

Hamiltonian energy in a modified Hindmarsh-Rose model.

Journal: Frontiers in network physiology

Authors' code: zhengqianqian35/network-code (no license)

Status: code verified, 4 files readable

[29083] doi:10.3389/fninf.2024.1358917 [paper, repository]

suMRak: a multi-tool solution for preclinical brain MRI data analysis.

Journal: Frontiers in neuroinformatics

Authors' code: hiim-hr/sumrak (GPL-3.0)

Status: code verified, 53 files readable, 15 matches

[29084] doi:10.3389/fnins.2024.1352409 [paper, data]

The brain entropy dynamics in resting state.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[29085] doi:10.3389/fphar.2024.1362464 [paper, data]

Quercetin reshapes gut microbiota homeostasis and modulates brain metabolic profile to regulate depression-like behaviors induced by CUMS in rats.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[29086] doi:10.3758/s13423-024-02489-1 [paper, data]

A complementary learning systems model of how sleep moderates retrieval practice effects.

Journal: Psychonomic bulletin & review

Status: data only, 1 dataset cited

[29087] doi:10.7554/elife.84004 [paper, repository]

Disruption of awake sharp-wave ripples does not affect memorization of locations in repeated-acquisition spatial memory tasks.

Journal: eLife

Authors' code: kloostermannerflab/fklab-controller-lab (no license), kloostermannerflab (no license)

Status: code verified, 29 files readable, 4 matches

Monday, 25 March 2024 (27 papers)

[29088] doi:10.1007/s00429-024-02775-7 [paper, repository]

White matter associations with spelling performance.

Journal: Brain structure & function

Authors' code: vistalab/vistasoft (no license), yeatmanlab/afq (gnu)

Status: code verified, 2,180 files readable, 18 matches

[29089] doi:10.1007/s00439-024-02655-4 [paper, data]

Heterozygous loss-of-function variants in DOCK4 cause neurodevelopmental delay and microcephaly.

Journal: Human genetics

Status: data only, 1 dataset cited

[29090] doi:10.1007/s11538-024-01273-5 [paper, repository]

Inferring Parameters of Pyramidal Neuron Excitability in Mouse Models of Alzheimer's Disease Using Biophysical Modeling and Deep Learning.

Journal: Bulletin of mathematical biology

Authors' code: IBM/rgan-demo-pytorch (MIT)

Status: code verified, 14 files readable, 2 matches

[29091] doi:10.1016/j.heliyon.2024.e28606 [paper, data]

Sagittal support rather than medial cortical support matters in geriatric intertrochanteric fracture: A finite element analysis study.

Journal: Heliyon

Status: data only, 1 dataset cited

[29092] doi:10.1016/j.heliyon.2024.e28607 [paper, data]

The effects of CO₂ levels and body temperature on brain interstitial pH alterations during the induction of hypoxic-ischemic encephalopathy in newborn pigs.

Journal: Heliyon

Status: data only, 2 datasets cited

[29093] doi:10.1016/j.isci.2024.109559 [paper]

Simultaneous oscillatory encoding of "hot" and "cold" information during social interactions in the monkey medial prefrontal cortex.

Journal: iScience

Status: code on request

[29094] doi:10.1038/s41467-024-46953-x [paper, repository]

SKA2 regulated hyperactive secretory autophagy drives neuroinflammation-induced neurodegeneration.

Journal: Nature communications

Authors' code: klengellab/Ska2 (no license)

Status: code verified, 5 files readable, 5 matches

[29095] doi:10.1038/s41593-024-01611-9 [paper, repository]

Spatial enhancer activation influences inhibitory neuron identity during mouse embryonic development.

Journal: Nature neuroscience

Authors' code: mayer-lab/Dvoretskova-et-al (MIT)

Status: code verified, 23 files readable, 25 matches

[29096] doi:10.1038/s41598-024-55922-9 [paper, repository]

Ising-like model replicating time-averaged spiking behaviour of in vitro neuronal networks.

Journal: Scientific reports

Authors' code: cesampaiof/Ising-like-model-neuronal-networks (GPL-3.0)

Status: code verified, 7 files readable

[29097] doi:10.1038/s44318-024-00067-8 [paper, data]

Regulation of Zbp1 by miR-99b-5p in microglia controls the development of schizophrenia-like symptoms in mice.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[29098] doi:10.1073/pnas.2314918121 [paper, repository]

Subcallosal cingulate deep brain stimulation evokes two distinct cortical responses via differential white matter activation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: AndreasSeas/SCC_DBS_EP (MIT)

Status: code verified, 14 files readable, 1 match

[29099] doi:10.1093/braincomms/fcae102 [paper, repository]

Dissociating reading and auditory comprehension in persons with aphasia.

Journal: Brain communications

Authors' code: nitrc.org/projects/niistat (no license)

Status: code verified

[29100] doi:10.1093/oons/kvae006 [paper, data]

Having a chat and then watching a movie: how social interaction synchronises our brains during co-watching.

Journal: Oxford open neuroscience

Status: data only, 1 dataset cited

[29101] doi:10.1136/bmjopen-2023-079140 [paper, data]

Association between body mass index and delirium incidence in critically ill patients: a retrospective cohort study based on the MIMIC-IV Database.

Journal: BMJ open

Status: data only, 2 datasets cited

[29102] doi:10.1162/imag_a_00114 [paper, repository]

Diffusion deep learning for brain age prediction and longitudinal tracking in children through adulthood.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: AIM-KannLab/pediatric-brain-age (CC-BY-NC-ND-4.0), Zenodo 10728314 (CC-BY-NC-ND-4.0)

Status: code verified, 48 files readable, 7 matches

[29103] doi:10.1162/imag_a_00115 [paper, repository]

Functional organization of the human corpus callosum unveiled with BOLD-fMRI gradients.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sourceforge.net/myelin-water-atlas (no license), yetianmed/subcortex (MIT)

Status: code verified, 46 files readable, 7 matches

[29104] doi:10.1186/s12916-024-03340-z [paper]

Associations between maternal pre-pregnancy BMI and infant striatal mean diffusivity.

Journal: BMC medicine

Status: code on request

[29105] doi:10.1186/s13148-024-01661-7 [paper, repository]

Epigenetic scores of blood-based proteins as biomarkers of general cognitive function and brain health.

Journal: Clinical epigenetics

Authors' code: hmsmith22/EpiScore_biomarkers_of_brain_health (no license)

Status: dead link

[29106] doi:10.1186/s40001-024-01730-w [paper, data]

Cortical lipid metabolic pathway alteration of early Alzheimer's disease and candidate drugs screen.

Journal: European journal of medical research

Status: data only, 1 dataset cited

[29107] doi:10.1186/s40478-024-01755-6 [paper, data]

Chronic hypoxia remodels the tumor microenvironment to support glioma stem cell growth.

Journal: Acta neuropathologica communications

Status: code on request, 1 dataset cited

[29108] doi:10.18632/aging.205666 [paper, data]

WTAP regulates the production of reactive oxygen species, promotes malignant progression, and is closely related to the tumor microenvironment in glioblastoma.

Journal: Aging

Status: data only, 1 dataset cited

[29109] doi:10.3389/fnins.2024.1277626 [paper, data]

Mode of administration influences plasma levels of active <i>Centella asiatica</i> compounds in 5xFAD mice while markers of neuroinflammation remain unaltered.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[29110] doi:10.3390/brainsci14040306 [paper, data]

Evaluation of the Relation between Ictal EEG Features and XAI Explanations.

Journal: Brain sciences

Status: data only, 2 datasets cited

[29111] doi:10.3390/sports12040090 [paper, data]

Predictability and Complexity of Fine and Gross Motor Skills in Fibromyalgia Patients: A Pilot Study.

Journal: Sports (Basel, Switzerland)

Status: data only, 1 dataset cited

[29112] doi:10.7150/thno.95164 [paper, data]

HDAC6-dependent deacetylation of NGF dictates its ubiquitination and maintains primordial follicle dormancy.

Journal: Theranostics

Status: data only, 1 dataset cited

[29113] doi:10.7554/elife.82809 [paper, repository]

Dysregulation of mTOR signaling mediates common neurite and migration defects in both idiopathic and 16p11.2 deletion autism neural precursor cells.

Journal: eLife

Authors' code: Zenodo 10835255 (MIT), Zenodo 10835254 (MIT)

Status: code verified, 2 files readable

[29114] doi:10.7554/elife.92821 [paper, repository]

Dopamine lesions alter the striatal encoding of single-limb gait.

Journal: eLife

Authors' code: longyang10/opto-microprobe-implantation (MIT), LongYang10/Gait-Analysis-of-Freely-Walking-Mouse (MIT)

Status: code verified, 23 files readable, 11 matches

Sunday, 24 March 2024 (1 paper)

[29115] doi:10.1016/j.celrep.2024.113996 [paper]

Peripheral peroxisomal β-oxidation engages neuronal serotonin signaling to drive stress-induced aversive memory in C. elegans.

Journal: Cell reports

Status: code on request

Saturday, 23 March 2024 (4 papers)

[29116] doi:10.1038/s41467-024-46796-6 [paper, repository]

The genetic architecture of multimodal human brain age.

Journal: Nature communications

Authors' code: anbai106.github.io/mlni (no license)

Status: code verified

[29117] doi:10.1038/s41467-024-46876-7 [paper, repository]

Plasma p-tau212 antemortem diagnostic performance and prediction of autopsy verification of Alzheimer's disease neuropathology.

Journal: Nature communications

Authors' code: Zenodo 10657935 (CC-BY-4.0)

Status: empty repository

[29118] doi:10.14336/ad.2024.0323 [paper, repository]

Neuroanatomical Signature of the Transition from Normal Cognition to MCI in Parkinson's Disease.

Journal: Aging and disease

Authors' code: medicslab/Bias_Correction (no license)

Status: empty repository, 1 file readable

[29119] doi:10.3390/jpm14040336 [paper, repository]

Reference Values for the German Version of the Quality of Life after Brain Injury in Children and Adolescents (QOLIBRI-KID/ADO) from a General Population Sample.

Journal: Journal of personalized medicine

Authors' code: mzeldovich/Project-Reference-values (no license)

Status: code verified, 22 files readable

Friday, 22 March 2024 (25 papers, 1 on this page)

[29120] doi:10.1007/s00701-024-06040-y [paper]

Incidence of surgically treated chronic subdural hematoma after head injury with normal initial computed tomography.

Journal: Acta neurochirurgica

Status: code on request

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.