Every paper, by date: page 132

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 132 of 200: 14 March 2024 to 5 March 2024.

Thursday, 14 March 2024 (32 papers, 7 on this page)

[29345] doi:10.3389/fnins.2024.1302767 [paper, data]

The neurophysiological effect of mild hypothermia in gyrencephalic brains submitted to ischemic stroke and spreading depolarizations.

Journal: Frontiers in neuroscience

Status: data only, 3 datasets cited

[29346] doi:10.3389/fphar.2024.1329895 [paper, data]

Methanol extract of <i>Ligusticum chuanxiong</i> Hort. Rhizome ameliorates bilateral common carotid artery stenosis-induced cognitive deficit in mice by altering microglia and astrocyte activation.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[29347] doi:10.3390/brainsci14030275 [paper, repository]

Gene Expression of GABA_A Receptor Subunits and Association with Patient Survival in Glioma.

Journal: Brain sciences

Authors' code: therneau/survival (no license)

Status: code verified, 352 files readable

[29348] doi:10.3390/brainsci14030278 [paper, data]

Cognitive, Emotional, and Daily Functioning Domains Involved in Decision-Making among Patients with Mild Cognitive Impairment: A Systematic Review.

Journal: Brain sciences

Status: data only, 2 datasets cited

[29349] doi:10.3390/cells13060507 [paper, repository]

Optical Genome Mapping Reveals Genomic Alterations upon Gene Editing in hiPSCs: Implications for Neural Tissue Differentiation and Brain Organoid Research.

Journal: Cells

Authors' code: Zenodo 10422172 (CC-BY-SA-4.0), Zenodo 10422171 (CC-BY-SA-4.0)

Status: code verified

[29350] doi:10.7554/elife.92376 [paper, repository]

Activity-dependent mitochondrial ROS signaling regulates recruitment of glutamate receptors to synapses.

Journal: eLife

Authors' code: racheldoser/GCaMP_Analysis_Excel_VBA (no license)

Status: empty repository

[29351] doi:10.7717/peerj-cs.1878 [paper, repository]

Enhancing brain tumor diagnosis: an optimized CNN hyperparameter model for improved accuracy and reliability.

Journal: PeerJ. Computer science

Authors' code: iamshaf/CNN-HyperParameter (no license), Zenodo 10476557 (CC-BY-4.0)

Status: code verified, 2 files readable, 3 matches

Wednesday, 13 March 2024 (35 papers)

[29352] doi:10.1002/ame2.12399 [paper, repository]

Single-cell transcriptomic sequencing identifies subcutaneous patient-derived xenograft recapitulated medulloblastoma.

Journal: Animal models and experimental medicine

Authors' code: MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software (MIT)

Status: code verified, 40 files readable

[29353] doi:10.1007/s00401-024-02688-z [paper, repository]

Neuronal STING activation in amyotrophic lateral sclerosis and frontotemporal dementia.

Journal: Acta neuropathologica

Authors' code: waingerlab/STING (no license)

Status: code verified, 9 files readable, 3 matches

[29354] doi:10.1007/s00429-024-02767-7 [paper, repository]

Hayling and stroop tests tap dissociable deficits and network-level neural correlates.

Journal: Brain structure & function

Authors' code: OSF mbsd4 (no license)

Status: code verified, 4 files readable, 2 matches

[29355] doi:10.1016/j.celrep.2024.113943 [paper, data]

Astrocytes control recent and remote memory strength by affecting the recruitment of the CA1→ACC projection to engrams.

Journal: Cell reports

Status: code on request, 1 dataset cited

[29356] doi:10.1016/j.heliyon.2024.e28085 [paper, data]

Identification of Y‒linked biomarkers and exploration of immune infiltration of normal-appearing gray matter in multiple sclerosis by bioinformatic analysis.

Journal: Heliyon

Status: data only, 1 dataset cited

[29357] doi:10.1038/s41388-024-03000-9 [paper, data]

p53 modulates kinase inhibitor resistance and lineage plasticity in NF1-related MPNSTs.

Journal: Oncogene

Status: code on request, 1 dataset cited

[29358] doi:10.1038/s41467-024-45882-z [paper, repository]

Understanding quantum machine learning also requires rethinking generalization.

Journal: Nature communications

Authors' code: Zenodo 10277124 (CC-BY-4.0), bpcarlos/understanding_qml_rethinking_gen (no license)

Status: code verified, 35 files readable

[29359] doi:10.1038/s41467-024-46354-0 [paper, data]

Biallelic NAA60 variants with impaired n-terminal acetylation capacity cause autosomal recessive primary familial brain calcifications.

Journal: Nature communications

Status: data only, 2 datasets cited

[29360] doi:10.1038/s41467-024-46651-8 [paper, repository]

Decomposing cortical activity through neuronal tracing connectome-eigenmodes in marmosets.

Journal: Nature communications

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), weiliao81/Marmoset_CFD (GPL-3.0), netneurolab/marmoset_connectome (BSD-3-Clause), Zenodo 10728317 (CC-BY-4.0), jiexfmri/marmoset_cfd (GPL-3.0)

Status: code verified, 139 files readable, 18 matches

[29361] doi:10.1038/s41586-024-07185-7 [paper, repository]

APOE4/4 is linked to damaging lipid droplets in Alzheimer's disease microglia.

Journal: Nature

Authors' code: twclab/LDAM (no license)

Status: code verified, 3 files readable, 1 match

[29362] doi:10.1038/s41586-024-07192-8 [paper, repository]

Neural and behavioural state switching during hippocampal dentate spikes.

Journal: Nature

Authors' code: nmtimme/Neuroscience-Information-Theory-Toolbox (no license)

Status: code verified, 43 files readable, 3 matches

[29363] doi:10.1083/jcb.202401057 [paper, data]

N-cadherin dynamically regulates pediatric glioma cell migration in complex environments.

Journal: The Journal of cell biology

Status: data only, 1 dataset cited

[29364] doi:10.1098/rspb.2023.2867 [paper, repository]

On the relationship between foveal mask interference and mental imagery in peripheral object recognition.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7082368 (no license)

Status: code found, still to be checked

[29365] doi:10.1136/jnnp-2023-332069 [paper, repository]

The T1-weighted/T2-weighted ratio as a biomarker of anti-NMDA receptor encephalitis.

Journal: Journal of neurology, neurosurgery, and psychiatry

Authors' code: timhartung/T1T2 (GPL-3.0)

Status: code verified, 3 files readable, 1 match

[29366] doi:10.1136/jnnp-2023-332387 [paper, data]

Are patients with GBA-Parkinson disease good candidates for deep brain stimulation? A longitudinal multicentric study on a large Italian cohort.

Journal: Journal of neurology, neurosurgery, and psychiatry

Status: data only, 1 dataset cited

[29367] doi:10.1152/jn.00285.2023 [paper, data]

Differential clustering of visual and choice- and saccade-related activity in macaque V3A and CIP.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[29368] doi:10.1162/opmi_a_00126 [paper, repository]

A Deep Learning Approach to Analyzing Continuous-Time Cognitive Processes.

Journal: Open mind : discoveries in cognitive science

Authors' code: coryshain/cdr (MIT), modelblocks/modelblocks-release (GPL-3.0)

Status: code verified, 461 files readable, 9 matches

[29369] doi:10.1186/s13244-024-01635-6 [paper, repository]

Deep learning-based automated lesion segmentation on pediatric focal cortical dysplasia II preoperative MRI: a reliable approach.

Journal: Insights into imaging

Authors' code: ZFTurbo/volumentations (MIT)

Status: code verified, 17 files readable

[29370] doi:10.1186/s40478-024-01750-x [paper, data]

DNA hypomethylator phenotype reprograms glutamatergic network in receptor tyrosine kinase gene-mutated glioblastoma.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[29371] doi:10.1186/s41232-024-00322-9 [paper, repository]

Chronological transitions of hepatocyte growth factor treatment effects in spinal cord injury tissue.

Journal: Inflammation and regeneration

Authors' code: yo-aka-gene/takemura_hgf (MIT)

Status: code verified, 36 files readable

[29372] doi:10.1186/s41747-024-00426-4 [paper, data]

Repeatability of deuterium metabolic imaging of healthy volunteers at 3 T.

Journal: European radiology experimental

Status: data only, 1 dataset cited

[29373] doi:10.1364/boe.513877 [paper, data]

Brain tumor grading diagnosis using transfer learning based on optical coherence tomography.

Journal: Biomedical optics express

Status: data only, 1 dataset cited

[29374] doi:10.1371/journal.pbio.3002504 [paper, data]

Neuronal ageing is promoted by the decay of the microtubule cytoskeleton.

Journal: PLoS biology

Status: data only, 1 dataset cited

[29375] doi:10.1371/journal.pcbi.1011074 [paper, repository]

End-to-end deep learning approach to mouse behavior classification from cortex-wide calcium imaging.

Journal: PLoS computational biology

Authors' code: atakehiro/Neural_Decoding_from_Calcium_Imaging_Data (MIT)

Status: code verified, 17 files readable, 3 matches

[29376] doi:10.1371/journal.pcbi.1011897 [paper, repository]

Bayesian inference is facilitated by modular neural networks with different time scales.

Journal: PLoS computational biology

Authors' code: tripdancer0916/slow-reservoir (no license)

Status: code verified, 11 files readable

[29377] doi:10.1371/journal.pone.0295142 [paper, repository]

Functional correlates of cognitive performance and working memory in temporal lobe epilepsy: Insights from task-based and resting-state fMRI.

Journal: PloS one

Authors' code: alffajardo/TLE2023_fMRI (no license)

Status: code verified, 3 files readable

[29378] doi:10.1371/journal.pone.0298384 [paper, data]

Psychophysiological and emotional effects of human-Dog interactions by activity type: An electroencephalogram study.

Journal: PloS one

Status: data only, 1 dataset cited

[29379] doi:10.1523/jneurosci.0621-23.2024 [paper, repository]

Dopamine D1-Receptor Organization Contributes to Functional Brain Architecture.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: robinpedersen/D1DR_FC_Architecture (no license)

Status: dead link

[29380] doi:10.3389/fnana.2024.1331305 [paper, repository]

Phylogenetic reduction of the magnocellular red nucleus in primates and inter-subject variability in humans.

Journal: Frontiers in neuroanatomy

Authors' code: JeroenSmaers/evomap (MIT)

Status: code verified, 14 files readable, 2 matches

[29381] doi:10.3389/fnhum.2024.1319574 [paper, data]

Real-time EEG-based emotion recognition for neurohumanities: perspectives from principal component analysis and tree-based algorithms.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[29382] doi:10.3389/fnhum.2024.1359753 [paper, repository]

The SESAMEEG package: a probabilistic tool for source localization and uncertainty quantification in M/EEG.

Journal: Frontiers in human neuroscience

Authors' code: pybees/sesameeg (BSD-3-Clause), pybees.github.io/sesameeg (no license), pybees/sesameeg_matlab (no license), pybees.github.io/sesameeg_matlab (no license)

Status: code verified, 41 files readable, 16 matches

[29383] doi:10.3390/molecules29061264 [paper, repository]

Experimental and Computational Methods to Assess Central Nervous System Penetration of Small Molecules.

Journal: Molecules (Basel, Switzerland)

Authors' code: pharmgkb.org (no license)

Status: code verified

[29384] doi:10.3892/ol.2024.14339 [paper, data]

CCNA2 and NEK2 regulate glioblastoma progression by targeting the cell cycle.

Journal: Oncology letters

Status: data only, 1 dataset cited

[29385] doi:10.7554/elife.88559 [paper, repository]

Noradrenaline release from the locus coeruleus shapes stress-induced hippocampal gene expression.

Journal: eLife

Authors' code: ETHZ-INS/Privitera-et.-al.-2023 (no license), Zenodo 10730454 (CC-BY-4.0)

Status: code verified, 9 files readable, 10 matches

[29386] doi:10.7554/elife.88777 [paper, repository]

Structural constraints on the emergence of oscillations in multi-population neural networks.

Journal: eLife

Authors' code: jiezang97/Code-for-Structural-constraints-on-the-emergence-of-oscillations (no license)

Status: code verified, 4 files readable

Tuesday, 12 March 2024 (36 papers)

[29387] doi:10.1007/s00401-024-02703-3 [paper, repository]

MSUT2 regulates tau spreading via adenosinergic signaling mediated ASAP1 pathway in neurons.

Journal: Acta neuropathologica

Authors' code: aristoteleo/dynast-release (MIT)

Status: code verified, 49 files readable

[29388] doi:10.1007/s00401-024-02709-x [paper, data]

Alteration of LARGE1 abundance in patients and a mouse model of 5q-associated spinal muscular atrophy.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[29389] doi:10.1007/s10827-024-00868-0 [paper, repository]

A voltage-based Event-Timing-Dependent Plasticity rule accounts for LTP subthreshold and suprathreshold for dendritic spikes in CA1 pyramidal neurons.

Journal: Journal of computational neuroscience

Authors' code: tomko-neuron/ETDP-CA1 (MIT), Zenodo 8348966 (CC-BY-4.0)

Status: code verified, 166 files readable, 6 matches

[29390] doi:10.1016/j.chom.2024.02.011 [paper, repository]

Pathophysiology of chikungunya virus infection associated with fatal outcomes.

Journal: Cell host & microbe

Authors' code: omicscope.readthedocs.io (no license)

Status: code verified

[29391] doi:10.1016/j.isci.2024.109484 [paper]

<i>Caenorhabditis elegans</i> neuropeptide NLP-27 enhances neurodegeneration and paralysis in an opioid-like manner during fungal infection.

Journal: iScience

Status: code on request

[29392] doi:10.1038/s41398-024-02848-5 [paper, data]

A comprehensive analysis of APOE genotype effects on human brain structure in the UK Biobank.

Journal: Translational psychiatry

Status: code on request, 3 datasets cited

[29393] doi:10.1038/s41467-024-46256-1 [paper, repository]

Synapsin 2a tetramerisation selectively controls the presynaptic nanoscale organisation of reserve synaptic vesicles.

Journal: Nature communications

Authors' code: tristanwallis/smlm_clustering (no license), Zenodo 10369046 (CC-BY-4.0)

Status: code verified, 26 files readable

[29394] doi:10.1038/s41467-024-46508-0 [paper, repository]

Distributed neural representations of conditioned threat in the human brain.

Journal: Nature communications

Authors' code: zhenfu-wen01/threat-mvpa (no license), Zenodo 10452949 (CC-BY-4.0)

Status: code verified, 11 files readable, 1 match

[29395] doi:10.1038/s41467-024-46598-w [paper, repository]

Predicting multiple observations in complex systems through low-dimensional embeddings.

Journal: Nature communications

Authors' code: wt1234wt/FRMM-framework (no license)

Status: code verified, 3 files readable

[29396] doi:10.1038/s41467-024-46629-6 [paper, repository]

Identification of four biotypes in temporal lobe epilepsy via machine learning on brain images.

Journal: Nature communications

Authors' code: ucl-pond (no license)

Status: code verified

[29397] doi:10.1038/s41467-024-46630-z [paper, repository]

A single nuclear transcriptomic characterisation of mechanisms responsible for impaired angiogenesis and blood-brain barrier function in Alzheimer's disease.

Journal: Nature communications

Authors' code: cran/bc3net (no license), stergiostsartsalis/a-single-nuclear-transcriptomic-characterisation-of-mechanisms-responsible-for-impaired-angiogenesis (no license), Zenodo 10627543 (CC-BY-4.0), stergiostsartsalis/vascular_ad (no license)

Status: code verified, 22 files readable, 9 matches

[29398] doi:10.1038/s41526-024-00367-7 [paper]

Daily artificial gravity partially mitigates vestibular processing changes associated with head-down tilt bedrest.

Journal: NPJ microgravity

Status: code on request

[29399] doi:10.1038/s41591-024-02843-9 [paper, repository]

Identification of clinical disease trajectories in neurodegenerative disorders with natural language processing.

Journal: Nature medicine

Authors' code: diseaseontology/humandiseaseontology (CC0-1.0), huggingface.co/microsoft/biomednlp-biomedbert-base-uncased-abstract-fulltext (MIT), huggingface.co/emilyalsentzer/bio_clinicalbert (MIT), huggingface.co/nnd-project/clinical_history_mekkes_pubmedbert (MIT), huggingface.co/nnd-project/clinical_history_mekkes_grud (MIT), NetherlandsNeurogeneticsDatabase/Clinical_History_NLP (MIT)

Status: code verified, 46 files readable, 10 matches

[29400] doi:10.1038/s41593-024-01592-9 [paper, data]

Liprin-α proteins are master regulators of human presynapse assembly.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[29401] doi:10.1038/s41598-024-56015-3 [paper]

Impairments in the early consolidation of spatial memories via group II mGluR agonism in the mammillary bodies.

Journal: Scientific reports

Status: code on request

[29402] doi:10.1038/s41598-024-56568-3 [paper, repository]

Impact of enriched environment on motor performance and learning in mice.

Journal: Scientific reports

Authors' code: StephanieDijkhuizen/Data_Environmental_Enrichment (GPL-3.0)

Status: code verified, 7 files readable, 2 matches

[29403] doi:10.1038/s41598-024-56718-7 [paper]

Predicting conversational satisfaction of face-to-face conversation through interpersonal similarity in resting-state functional connectivity.

Journal: Scientific reports

Status: code on request

[29404] doi:10.1038/s44321-024-00039-9 [paper, repository]

Organotypic culture of human brain explants as a preclinical model for AI-driven antiviral studies.

Journal: EMBO molecular medicine

Authors' code: WillyLutz/tahynavirus-electrical-analysis (no license)

Status: code verified, 7 files readable, 6 matches

[29405] doi:10.1073/pnas.2302239121 [paper, repository]

Motor "laziness" constrains fixation selection in real-world tasks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF f7gc8 (no license)

Status: empty repository

[29406] doi:10.1111/acel.14138 [paper, data]

Endothelial-specific telomerase inactivation causes telomere-independent cell senescence and multi-organ dysfunction characteristic of aging.

Journal: Aging cell

Status: data only, 1 dataset cited

[29407] doi:10.1111/ene.16266 [paper, data]

Distinct neural signatures of pulvinar in C9orf72 amyotrophic lateral sclerosis mutation carriers and noncarriers.

Journal: European journal of neurology

Status: data only, 2 datasets cited

[29408] doi:10.1159/000537801 [paper, data]

Temporal Trends in Severe Brain Injury and Associated Outcomes in Very Preterm Infants.

Journal: Neonatology

Status: data only, 1 dataset cited

[29409] doi:10.1172/jci177771 [paper, repository]

BAP1 is required prenatally for differentiation and maintenance of postnatal murine enteric nervous system.

Journal: The Journal of clinical investigation

Authors' code: christinawright100/bowelsegmentation (GPL-3.0), HeuckerothLab/Bap1_Schneider2024 (GPL-3.0)

Status: code verified, 19 files readable, 6 matches

[29410] doi:10.1186/s40708-024-00221-2 [paper]

Rejuvenating classical brain electrophysiology source localization methods with spatial graph Fourier filters for source extents estimation.

Journal: Brain informatics

Status: code on request

[29411] doi:10.1371/journal.pbio.3002539 [paper, repository]

Synaptic and dendritic architecture of different types of hippocampal somatostatin interneurons.

Journal: PLoS biology

Authors' code: BlueBrain/BluePyEfe (LGPL-3.0), Zenodo 10580838 (CC-BY-4.0), modeldb:2016137 (no license)

Status: code verified, 47 files readable

[29412] doi:10.2463/mrms.rev.2023-0159 [paper, repository]

Reproducible Spinal Cord Quantitative MRI Analysis with the Spinal Cord Toolbox.

Journal: Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine

Authors' code: spinalcordtoolbox/manual-correction (MIT), spinalcordtoolbox/spinalcordtoolbox (LGPL-3.0)

Status: code verified, 235 files readable, 15 matches

[29413] doi:10.3389/fddev.2024.1360302 [paper, data]

Receptor-mediated transcytosis for brain delivery of therapeutics: receptor classes and criteria.

Journal: Frontiers in drug delivery

Status: data only, 1 dataset cited

[29414] doi:10.3389/fnhum.2024.1359841 [paper, repository]

Inter-brain desynchronization in social interaction: a consequence of subjective involvement?

Journal: Frontiers in human neuroscience

Authors' code: oist-ecsu/ibdesync (no license)

Status: code verified, 2 files readable

[29415] doi:10.3389/fphar.2024.1369757 [paper, repository]

Antiretroviral drugs from multiple classes induce loss of excitatory synapses between hippocampal neurons in culture.

Journal: Frontiers in pharmacology

Authors' code: thayerlab (no license)

Status: code verified

[29416] doi:10.3390/brainsci14030271 [paper, repository]

Subject-Independent Emotion Recognition Based on EEG Frequency Band Features and Self-Adaptive Graph Construction.

Journal: Brain sciences

Authors' code: Doubleb0424/BFEnet (no license)

Status: code verified, 2 files readable

[29417] doi:10.3390/metabo14030161 [paper, data]

Palmitate Compromises C6 Astrocytic Cell Viability and Mitochondrial Function.

Journal: Metabolites

Status: data only, 3 datasets cited

[29418] doi:10.3390/s24061820 [paper]

Effective Signal Extraction Algorithm for Cerebral Blood Oxygen Based on Dual Detectors.

Journal: Sensors (Basel, Switzerland)

Status: code on request

[29419] doi:10.7554/elife.82952 [paper, repository]

Coordinated head direction representations in mouse anterodorsal thalamic nucleus and retrosplenial cortex.

Journal: eLife

Authors' code: doi:10.5061/dryad.dfn2z3555 (no license)

Status: dead link

[29420] doi:10.7554/elife.89337 [paper, repository]

Neural criticality from effective latent variables.

Journal: eLife

Authors' code: ajsederberg/avalanche (GPL-3.0), supp:PMC10957169/elife-89337-code1.zip (no license)

Status: code verified, 228 files readable, 4 matches

[29421] doi:10.7554/elife.89532 [paper, data]

Combinatorial expression of γ-protocadherins regulates synaptic connectivity in the mouse neocortex.

Journal: eLife

Status: data only, 1 dataset cited

[29422] doi:10.7554/elife.92079 [paper, repository]

Neural attentional filters and behavioural outcome follow independent individual trajectories over the adult lifespan.

Journal: eLife

Authors' code: OSF 28r57 (no license), OSF g8sd5 (no license)

Status: code verified

Monday, 11 March 2024 (37 papers)

[29423] doi:10.1007/s12311-024-01682-1 [paper, repository]

The Effect of Nucleo-Olivary Stimulation on Climbing Fiber EPSPs in Purkinje Cells.

Journal: Cerebellum (London, England)

Authors' code: rasmussenanders/CFR (no license)

Status: code verified, 1 file readable, 1 match

[29424] doi:10.1016/j.ebiom.2024.105047 [paper, repository]

Drop the shortcuts: image augmentation improves fairness and decreases AI detection of race and other demographics from medical images.

Journal: EBioMedicine

Authors' code: Ryan-RE-Wang/Image-augmentation-improves-fairness-of-deep-neural-network-for-medical-image-interpretation (no license)

Status: code verified, 21 files readable, 13 matches

[29425] doi:10.1016/j.isci.2024.109477 [paper, data]

Structural neuroplasticity after sleep loss modifies behavior and requires neurexin and neuroligin.

Journal: iScience

Status: code on request, 2 datasets cited

[29426] doi:10.1016/j.xcrm.2024.101464 [paper, repository]

An accessible deep learning tool for voxel-wise classification of brain malignancies from perfusion MRI.

Journal: Cell reports. Medicine

Authors' code: Zenodo 8301141 (other-open), radiomicsgroup/discern-app (CC-BY-SA-4.0), agarcia-ruiz/discern-app (CC-BY-SA-4.0)

Status: code verified, 58 files readable, 1 match

[29427] doi:10.1016/j.xpro.2024.102931 [paper, repository]

Protocol for in vivo dual-color fiber photometry in the mouse thalamus.

Journal: STAR protocols

Authors' code: swyeon11/MN-MD (MIT)

Status: code verified, 3 files readable

[29428] doi:10.1038/s41422-024-00946-z [paper, data]

Multiple cancer cell types release LIF and Gal3 to hijack neural signals.

Journal: Cell research

Status: data only, 1 dataset cited

[29429] doi:10.1038/s41467-024-46333-5 [paper, repository]

PCDHA9 as a candidate gene for amyotrophic lateral sclerosis.

Journal: Nature communications

Authors' code: NeuroXplorer-XuLab/PCDHA9-ALS-Candidate-Gene-Functional-Identification (no license), Zenodo 10561493 (CC-BY-4.0), Zenodo 10561492 (CC-BY-4.0)

Status: code verified, 15 files readable, 5 matches

[29430] doi:10.1038/s41467-024-46382-w [paper, repository]

Local orchestration of distributed functional patterns supporting loss and restoration of consciousness in the primate brain.

Journal: Nature communications

Authors' code: neurospin/pypreclin (CECILL-2.1), TobousRong/Hierarchical-module-analysis (no license), dominance-analysis/dominance-analysis (MIT), cran.r-project.org/web/packages (no license), Zenodo 6955280 (CC-BY-4.0)

Status: code verified, 161 files readable, 7 matches

[29431] doi:10.1038/s41467-024-46478-3 [paper, repository]

Silencing CA1 pyramidal cells output reveals the role of feedback inhibition in hippocampal oscillations.

Journal: Nature communications

Authors' code: chronux.org (no license), ChinnakkaruppanAdaikkan/Cumulative-Cooccurance-Index (no license)

Status: code verified, 3 files readable

[29432] doi:10.1038/s41467-024-46511-5 [paper, repository]

A multi-demand operating system underlying diverse cognitive tasks.

Journal: Nature communications

Authors' code: Zenodo 10702914 (CC-BY-4.0), scsnl/Cai_Multiple_Demand_System_2023 (no license), Zenodo 10660076 (CC-BY-4.0)

Status: code verified, 174 files readable, 8 matches

[29433] doi:10.1038/s41467-024-46539-7 [paper, repository]

BASALT refines binning from metagenomic data and increases resolution of genome-resolved metagenomic analysis.

Journal: Nature communications

Authors' code: EMBL-PKU/BASALT (MIT), PacificBiosciences/pb-metagenomics-tools (BSD-3-Clause), Zenodo 10653187 (CC-BY-4.0)

Status: code verified, 93 files readable, 1 match

[29434] doi:10.1038/s41467-024-46592-2 [paper, repository]

Identification of gene regulatory networks affected across drug-resistant epilepsies.

Journal: Nature communications

Authors' code: Elysheba/NattComms_GeneRegulatoryNetworks_RefractoryEpilepsy (GPL-3.0)

Status: code verified, 21 files readable, 10 matches

[29435] doi:10.1038/s41531-024-00670-w [paper, repository]

Disrupted sleep-wake regulation in the MCI-Park mouse model of Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: Zenodo 10055607 (CC-BY-4.0), zekebarger/accusleep (GPL-3.0)

Status: code verified, 42 files readable, 1 match

[29436] doi:10.1038/s41598-024-54755-w [paper, repository]

Spike synchrony as a measure of Gestalt structure.

Journal: Scientific reports

Authors' code: rainsummer613/synchrony (MIT)

Status: code verified, 21 files readable, 5 matches

[29437] doi:10.1038/s41598-024-56601-5 [paper]

Early-life influenza A (H1N1) infection independently programs brain connectivity, HPA AXIS and tissue-specific gene expression profiles.

Journal: Scientific reports

Status: code on request

[29438] doi:10.1038/s41598-024-56668-0 [paper, repository]

Objective sleep quality predicts subjective sleep ratings.

Journal: Scientific reports

Authors' code: Zenodo 10427244 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[29439] doi:10.1038/s41746-024-01025-8 [paper, data]

Modeling multiple sclerosis using mobile and wearable sensor data.

Journal: NPJ digital medicine

Status: data only, 1 dataset cited

[29440] doi:10.1038/s44271-024-00067-8 [paper, repository]

TDCS over PPC or DLPFC does not improve visual working memory capacity.

Journal: Communications psychology

Authors' code: OSF 92k4w (no license)

Status: code verified, 169 files readable, 9 matches

[29441] doi:10.1073/pnas.2309054121 [paper, data]

Onscreen presence of instructors in video lectures affects learners' neural synchrony and visual attention during multimedia learning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[29442] doi:10.1073/pnas.2309232121 [paper, data]

The dorsomedial prefrontal cortex prioritizes social learning during rest.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[29443] doi:10.1080/15592294.2024.2326868 [paper, data]

m6A reader YTHDC2 mediates NCOA4 mRNA stability affecting ferritinophagy to alleviate secondary injury after intracerebral haemorrhage.

Journal: Epigenetics

Status: data only, 1 dataset cited

[29444] doi:10.1162/imag_a_00105 [paper]

Hippocampal subfields and their neocortical interactions during autobiographical memory.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[29445] doi:10.1162/imag_a_00106 [paper, repository]

Electric-field-based dosing for TMS.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: gitlab.gwdg.de/tms-localization/papers/dosing_strategies (CC-BY-NC-ND-4.0)

Status: code verified, 3 files readable

[29446] doi:10.1172/jci165787 [paper, data]

A BMP-controlled metabolic/epigenetic signaling cascade directs midfacial morphogenesis.

Journal: The Journal of clinical investigation

Status: data only, 2 datasets cited

[29447] doi:10.1186/s13024-024-00712-0 [paper, data]

Updates on mouse models of Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[29448] doi:10.1371/journal.pbio.3002534 [paper, repository]

Attention to audiovisual speech shapes neural processing through feedback-feedforward loops between different nodes of the speech network.

Journal: PLoS biology

Authors' code: OSF agxth (no license)

Status: code verified, 22 files readable, 1 match

[29449] doi:10.1371/journal.pcbi.1011891 [paper, repository]

Cortical cell assemblies and their underlying connectivity: An in silico study.

Journal: PLoS computational biology

Authors' code: Zenodo 8052721 (CC-BY-4.0), Zenodo 8112725 (other-open), bluebrain/assemblyfire (Apache-2.0)

Status: code verified, 65 files readable, 11 matches

[29450] doi:10.1371/journal.pone.0295536 [paper, repository]

Adaptive mask-based brain extraction method for head CT images.

Journal: PloS one

Authors' code: supp:PMC10927156/pone.0295536.s001.zip (no license)

Status: code verified

[29451] doi:10.3389/fimmu.2024.1372113 [paper, data]

Novel prognostic biomarker TBC1D1 is associated with immunotherapy resistance in gliomas.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[29452] doi:10.3389/fninf.2024.1080173 [paper, repository]

Intra-V1 functional networks and classification of observed stimuli.

Journal: Frontiers in neuroinformatics

Authors' code: noahbenson/neuropythy (AGPL-3.0)

Status: code verified, 58 files readable

[29453] doi:10.3389/fnins.2024.1286130 [paper, repository]

Interpersonal neural synchrony and mental disorders: unlocking potential pathways for clinical interventions.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 6907681 (other-open)

Status: code verified, 13 files readable

[29454] doi:10.3389/fnins.2024.1333243 [paper, repository]

Phybers: a package for brain tractography analysis.

Journal: Frontiers in neuroscience

Authors' code: cython.readthedocs.io (no license), phybers/phybers (no license), Zenodo 3509134 (BSD-3-Clause), pandas-dev/pandas (BSD-3-Clause)

Status: code verified, 3,182 files readable, 7 matches

[29455] doi:10.3389/fnins.2024.1366165 [paper, repository]

Incorporating <i>a-priori</i> information in deep learning models for quantitative susceptibility mapping via adaptive convolution.

Journal: Frontiers in neuroscience

Authors' code: sunhongfu/deepmri (GPL-3.0), HMRICF/DL-QSM (GPL-3.0)

Status: code verified, 5 files readable, 4 matches

[29456] doi:10.3390/biom14030331 [paper, data]

Functional Implications of the Prosomeric Brain Model.

Journal: Biomolecules

Status: data only, 1 dataset cited

[29457] doi:10.3390/brainsci14030267 [paper]

An Analysis of the Correlation between the Asymmetry of Different EEG-Sensor Locations in Diverse Frequency Bands and Short-Term Subjective Well-Being Changes.

Journal: Brain sciences

Status: code on request

[29458] doi:10.3758/s13414-024-02864-z [paper, data]

Fixation-related potentials during mobile map assisted navigation in the real world: The effect of landmark visualization style.

Journal: Attention, perception & psychophysics

Status: data only, 1 dataset cited

[29459] doi:10.7554/elife.92552 [paper, data]

Developmental conversion of thymocyte-attracting cells into self-antigen-displaying cells in embryonic thymus medulla epithelium.

Journal: eLife

Status: data only, 1 dataset cited

Saturday, 9 March 2024 (11 papers)

[29460] doi:10.1002/alz.13767 [paper, repository]

BIN1^K358R suppresses glial response to plaques in mouse model of Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: swaruplabUCI/Phenotyping_Bin1K358R_in_5xFAD_mice_model_2023 (no license)

Status: code verified, 6 files readable, 5 matches

[29461] doi:10.1016/j.heliyon.2024.e27423 [paper, data]

TXNIP/NLRP3 aggravates global cerebral ischemia-reperfusion injury-induced cognitive decline in mice.

Journal: Heliyon

Status: data only, 1 dataset cited

[29462] doi:10.1038/s41467-024-45825-8 [paper, data]

Identification of the growth cone as a probe and driver of neuronal migration in the injured brain.

Journal: Nature communications

Status: data only, 1 dataset cited

[29463] doi:10.1038/s41467-024-46094-1 [paper, repository]

Temporally organized representations of reward and risk in the human brain.

Journal: Nature communications

Authors' code: manvincent/temp_org_iEEG (GPL-2.0), Zenodo 10525236 (CC-BY-4.0)

Status: code verified, 70 files readable, 17 matches

[29464] doi:10.1038/s41467-024-46460-z [paper, repository]

Prefrontal control of superior colliculus modulates innate escape behavior following adversity.

Journal: Nature communications

Authors' code: OSF h7r4c (no license)

Status: code verified, 56 files readable

[29465] doi:10.1038/s41467-024-46488-1 [paper, data]

Neural timescales reflect behavioral demands in freely moving rhesus macaques.

Journal: Nature communications

Status: data only, 1 dataset cited

[29466] doi:10.1038/s41598-024-55688-0 [paper, data]

Neural asymmetry in aligning with generous versus selfish descriptive norms in a charitable donation task.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29467] doi:10.1038/s41598-024-55784-1 [paper, data]

Fractional order memcapacitive neuromorphic elements reproduce and predict neuronal function.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29468] doi:10.1038/s42003-024-05976-2 [paper, repository]

Transcranial direct current stimulation suggests a causal role of the medial prefrontal cortex in learning social hierarchy.

Journal: Communications biology

Authors' code: Zenodo 10650865 (CC-BY-4.0)

Status: code verified, 1 file readable

[29469] doi:10.1186/s12967-024-05051-8 [paper, data]

Characterizing neuroinflammation and identifying prenatal diagnostic markers for neural tube defects through integrated multi-omics analysis.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[29470] doi:10.3390/s24061776 [paper, repository]

Implementation of a Real-Time Brain-to-Brain Synchrony Estimation Algorithm for Neuroeducation Applications.

Journal: Sensors (Basel, Switzerland)

Authors' code: Amisaday74/REAL-TIME-B2B- (CC0-1.0)

Status: code verified, 16 files readable, 2 matches

Friday, 8 March 2024 (22 papers)

[29471] doi:10.1007/s00701-024-06008-y [paper]

Optimizing patient outcome in intracranial tumor surgery: a detailed prospective study of adverse events and mortality reduction strategies in neurosurgery.

Journal: Acta neurochirurgica

Status: code on request

[29472] doi:10.1007/s10162-024-00937-2 [paper]

Exploring the Use of Interleaved Stimuli to Measure Cochlear-Implant Excitation Patterns.

Journal: Journal of the Association for Research in Otolaryngology : JARO

Status: code on request

[29473] doi:10.1007/s40279-024-02002-7 [paper, data]

What We Do Not Know About Stretching in Healthy Athletes: A Scoping Review with Evidence Gap Map from 300 Trials.

Journal: Sports medicine (Auckland, N.Z.)

Status: data only, 3 datasets cited

[29474] doi:10.1016/j.isci.2024.109438 [paper, data]

Heterogeneous subpopulations of GABA_AR-responding neurons coexist across neuronal network scales and developmental stages in health and disease.

Journal: iScience

Status: code on request, 1 dataset cited

[29475] doi:10.1016/j.isci.2024.109454 [paper, repository]

Disease phenotypic screening in neuron-glia cocultures identifies blockers of inflammatory neurodegeneration.

Journal: iScience

Authors' code: timjyb/Birkle-et-al-2023-HTS (no license), tkonopka/umap (other), timjyb/Birkle-et-al-2024-HCS (no license)

Status: code verified, 44 files readable, 2 matches

[29476] doi:10.1038/s41380-024-02456-1 [paper]

Enhanced fear memory after social defeat in mice is dependent on interleukin-1 receptor signaling in glutamatergic neurons.

Journal: Molecular psychiatry

Status: code on request

[29477] doi:10.1038/s41467-024-45921-9 [paper, repository]

Organization of reward and movement signals in the basal ganglia and cerebellum.

Journal: Nature communications

Authors' code: noga-larry (no license), Zenodo 10252467 (CC-BY-4.0), noga-larry/albert-analysis (no license)

Status: code verified, 332 files readable, 2 matches

[29478] doi:10.1038/s41467-024-46350-4 [paper, repository]

A persistent prefrontal reference frame across time and task rules.

Journal: Nature communications

Authors' code: chenhungling/CaimanGUI (GPL-3.0), Zenodo 10528243 (CC-BY-4.0)

Status: code verified, 5 files readable, 2 matches

[29479] doi:10.1038/s41467-024-46427-0 [paper, data]

microRNA-33 controls hunger signaling in hypothalamic AgRP neurons.

Journal: Nature communications

Status: data only, 1 dataset cited

[29480] doi:10.1038/s41531-024-00663-9 [paper]

Modulation of DBS-induced cortical responses and movement by the directionality and magnitude of current administered.

Journal: NPJ Parkinson's disease

Status: code on request

[29481] doi:10.1038/s41598-024-55753-8 [paper]

Modeling brain network flexibility in networks of coupled oscillators: a feasibility study.

Journal: Scientific reports

Status: code on request

[29482] doi:10.1038/s41598-024-56253-5 [paper, data]

Loss-of-function variant in spermidine/spermine N1-acetyl transferase like 1 (SATL1) gene as an underlying cause of autism spectrum disorder.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29483] doi:10.1038/s42003-024-05945-9 [paper, repository]

Speech-induced suppression during natural dialogues.

Journal: Communications biology

Authors' code: jegonza66/SIS-during-natural-dialogue (no license), jegonza66/SIS-during-natural-dialog (no license)

Status: code verified, 14 files readable, 2 matches

[29484] doi:10.1038/s42003-024-05996-y [paper, data]

Modulatory effects of noradrenergic and serotonergic signaling pathway on neurovascular coupling.

Journal: Communications biology

Status: data only, 1 dataset cited

[29485] doi:10.1126/sciadv.adk6840 [paper, data]

Dissecting abstract, modality-specific and experience-dependent coding of affect in the human brain.

Journal: Science advances

Status: data only, 1 dataset cited

[29486] doi:10.1162/imag_a_00101 [paper, repository]

Systematic cross-sectional age-associations in global fMRI signal topography.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: jasonSnomi/LifespanGlobalSignalTopography (no license)

Status: code verified, 3 files readable, 1 match

[29487] doi:10.1162/imag_a_00103 [paper, repository]

The past, present, and future of the brain imaging data structure (BIDS).

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF x7fh8 (no license), Zenodo 5910584 (MIT), Zenodo 10719454 (GPL-3.0), bids-standard/bids-matlab (MIT)

Status: code verified, 411 files readable

[29488] doi:10.1172/jci.insight.176103 [paper, data]

Purine nucleoside phosphorylase inhibition is an effective approach for the treatment of chemical hemorrhagic cystitis.

Journal: JCI insight

Status: data only, 1 dataset cited

[29489] doi:10.1186/s10020-024-00801-2 [paper]

Huntingtin HTT1a is generated in a CAG repeat-length-dependent manner in human tissues.

Journal: Molecular medicine (Cambridge, Mass.)

Status: code on request

[29490] doi:10.1186/s12974-024-03052-4 [paper, data]

TYROBP/DAP12 knockout in Huntington's disease Q175 mice cell-autonomously decreases microglial expression of disease-associated genes and non-cell-autonomously mitigates astrogliosis and motor deterioration.

Journal: Journal of neuroinflammation

Status: data only, 12 datasets cited

[29491] doi:10.3389/fimmu.2024.1339336 [paper, data]

Revisiting roles of mast cells and neural cells in keloid: exploring their connection to disease activity.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[29492] doi:10.3390/bioengineering11030266 [paper, data]

Brain Tumor Detection and Categorization with Segmentation of Improved Unsupervised Clustering Approach and Machine Learning Classifier.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 3 datasets cited

Thursday, 7 March 2024 (26 papers)

[29493] doi:10.1016/j.celrep.2024.113904 [paper]

Disease-causing Slack potassium channel mutations produce opposite effects on excitability of excitatory and inhibitory neurons.

Journal: Cell reports

Status: code on request

[29494] doi:10.1016/j.heliyon.2024.e27446 [paper]

Structural alterations of brain in different disease states of Crohn's disease: Results of a cross-sectional study in a Chinese hospital.

Journal: Heliyon

Status: code on request

[29495] doi:10.1016/j.ymthe.2024.03.009 [paper, repository]

In vivo base editing of a pathogenic Eif2b5 variant improves vanishing white matter phenotypes in mice.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Authors' code: tsailabSJ/changeseq (AGPL-3.0)

Status: code verified, 29 files readable, 2 matches

[29496] doi:10.1038/s41380-024-02482-z [paper]

Proteomic analysis of the developing mammalian brain links PCDH19 to the Wnt/β-catenin signalling pathway.

Journal: Molecular psychiatry

Status: code on request

[29497] doi:10.1038/s41380-024-02486-9 [paper, repository]

Spatiotemporal dynamics of hippocampal-cortical networks underlying the unique phenomenological properties of trauma-related intrusive memories.

Journal: Molecular psychiatry

Authors' code: OSF exybv (no license)

Status: code found, still to be checked

[29498] doi:10.1038/s41386-024-01825-2 [paper, repository]

Reactivation of encoding ensembles in the prelimbic cortex supports temporal associations.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: coelhocao/Brain_Network_analysis (MIT)

Status: code verified, 23 files readable, 2 matches

[29499] doi:10.1038/s41398-024-02799-x [paper, repository]

Association between resting-state connectivity patterns in the defensive system network and treatment response in spider phobia-a replication approach.

Journal: Translational psychiatry

Authors' code: OSF u65va (no license)

Status: code verified

[29500] doi:10.1038/s41420-024-01885-9 [paper, repository]

Single cell transcriptome analysis of the THY-Tau22 mouse model of Alzheimer's disease reveals sex-dependent dysregulations.

Journal: Cell death discovery

Authors' code: gitlab.lcsb.uni.lu/bds/thy_tau22_scrnaseq (GPL-3.0)

Status: code verified, 6 files readable, 10 matches

[29501] doi:10.1038/s41467-024-45773-3 [paper, data]

Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons.

Journal: Nature communications

Status: data only, 1 dataset cited

[29502] doi:10.1038/s41597-024-03106-5 [paper, data]

PEARL-Neuro Database: EEG, fMRI, health and lifestyle data of middle-aged people at risk of dementia.

Journal: Scientific data

Status: data only, 2 datasets cited

[29503] doi:10.1038/s41598-024-55508-5 [paper, data]

Decision-making processes in perceptual learning depend on effectors.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29504] doi:10.1038/s42003-024-05909-z [paper, repository]

The cortical representation of language timescales is shared between reading and listening.

Journal: Communications biology

Authors' code: denizenslab/timescales_filtering (BSD-3-Clause)

Status: code verified, 11 files readable, 6 matches

[29505] doi:10.1073/pnas.2316365121 [paper, repository]

Single neurons in the thalamus and subthalamic nucleus process cardiac and respiratory signals in humans.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: peterhcharlton.github.io/rrest (no license), OSF m86se (no license)

Status: code verified, 6 files readable, 2 matches

[29506] doi:10.1073/pnas.2322574121 [paper, data]

The neuroimmune CGRP-RAMP1 axis tunes cutaneous adaptive immunity to the microbiota.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[29507] doi:10.1093/braincomms/fcae083 [paper, repository]

Linking sarcopenia, brain structure and cognitive performance: a large-scale UK Biobank study.

Journal: Brain communications

Authors' code: precimed/ukb (no license), OSF txbwa (no license)

Status: code verified, 18 files readable, 19 matches

[29508] doi:10.1186/s12906-024-04413-5 [paper, repository]

Mind and body connection in expert meditators: a computational study based on central and peripheral nervous system.

Journal: BMC complementary medicine and therapies

Authors' code: biolab/orange3 (other), scikit-learn.org/stable/user_guide.html (no license)

Status: code verified, 759 files readable, 2 matches

[29509] doi:10.1371/journal.pcbi.1011921 [paper, repository]

Modeling circuit mechanisms of opposing cortical responses to visual flow perturbations.

Journal: PLoS computational biology

Authors' code: JavierGalvan9/Billeh_model_opposing_responses (no license)

Status: code verified, 29 files readable, 3 matches

[29510] doi:10.1371/journal.pone.0299108 [paper, repository]

EEG as a potential ground truth for the assessment of cognitive state in software development activities: A multimodal imaging study.

Journal: PloS one

Authors' code: ai4eu.dei.uc.pt/base-cognitive-state-monitoring-during-bug-inspection-dataset (no license), Julio-CMedeiros/EEG-Cognitive-State-Assessment-in-Software-Development-EEG-Multimodal-Imaging-Supplementary (no license)

Status: code verified, 32 files readable, 2 matches

[29511] doi:10.3389/fnins.2024.1359631 [paper, data]

Identification of novel hub genes for Alzheimer's disease associated with the hippocampus using WGCNA and differential gene analysis.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[29512] doi:10.3758/s13428-023-02335-7 [paper, repository]

SHAP value-based ERP analysis (SHERPA): Increasing the sensitivity of EEG signals with explainable AI methods.

Journal: Behavior research methods

Authors' code: sophiasylvester/sherpa (no license)

Status: code verified, 4 files readable, 2 matches

[29513] doi:10.46471/gigabyte.113 [paper, repository]

Julearn: an easy-to-use library for leakage-free evaluation and inspection of ML models.

Journal: GigaByte (Hong Kong, China)

Authors' code: juaml/julearn (AGPL-3.0), juaml/julearn_paper (AGPL-3.0)

Status: code verified, 161 files readable, 10 matches

[29514] doi:10.7554/elife.84770 [paper, repository]

Interactions between circuit architecture and plasticity in a closed-loop cerebellar system.

Journal: eLife

Authors' code: goldman-lab/VOR-model-Payne (MIT)

Status: code verified, 63 files readable, 8 matches

[29515] doi:10.7554/elife.89151 [paper, repository]

Disrupting abnormal neuronal oscillations with adaptive delayed feedback control.

Journal: eLife

Authors' code: ncn-lab/adfc (GPL-3.0), izhikevich.org/publications/net.m (no license)

Status: code verified, 2 files readable

[29516] doi:10.7554/elife.89767 [paper, data]

Acute ampakines increase voiding function and coordination in a rat model of SCI.

Journal: eLife

Status: data only, 1 dataset cited

[29517] doi:10.7554/elife.92254 [paper, repository]

Sequentially activated discrete modules appear as traveling waves in neuronal measurements with limited spatiotemporal sampling.

Journal: eLife

Authors' code: Zenodo 10429410 (CC-BY-4.0), evolutionaryneuralcodinglab/travelling-waves-or-sequentially-activated-discrete-modules (no license)

Status: code verified, 71 files readable, 10 matches

[29518] doi:10.7717/peerj-cs.1874 [paper, repository]

Electroencephalography (EEG) based epilepsy diagnosis via multiple feature space fusion using shared hidden space-driven multi-view learning.

Journal: PeerJ. Computer science

Authors' code: upf.edu/web/ntsa (no license), supp:PMC10936759/peerj-cs-10-1874-s001.zip (no license)

Status: code verified, 8 files readable

Wednesday, 6 March 2024 (28 papers)

[29519] doi:10.1007/s11060-024-04625-2 [paper, data]

Inhibition of BMP signaling pathway induced senescence and calcification in anaplastic meningioma.

Journal: Journal of neuro-oncology

Status: data only, 1 dataset cited

[29520] doi:10.1016/j.celrep.2024.113914 [paper, data]

Cofilactin rod formation mediates inflammation-induced neurite degeneration.

Journal: Cell reports

Status: code on request, 1 dataset cited

[29521] doi:10.1016/j.heliyon.2024.e27634 [paper]

Pcgf5: An important regulatory factor in early embryonic neural induction.

Journal: Heliyon

Status: code on request

[29522] doi:10.1016/j.isci.2024.109435 [paper, data]

Mild hypothermia promotes neuronal differentiation of human neural stem cells via RBM3-SOX11 signaling pathway.

Journal: iScience

Status: code on request, 2 datasets cited

[29523] doi:10.1038/s41467-024-45803-0 [paper, repository]

Fully bioresorbable hybrid opto-electronic neural implant system for simultaneous electrophysiological recording and optogenetic stimulation.

Journal: Nature communications

Authors' code: Zenodo 10581398 (MIT), jeongjin-kim-p/bioresorb_matlab (MIT)

Status: code verified, 14 files readable

[29524] doi:10.1038/s41467-024-46315-7 [paper, repository]

BHLHE40/41 regulate microglia and peripheral macrophage responses associated with Alzheimer's disease and other disorders of lipid-rich tissues.

Journal: Nature communications

Authors' code: marcoralab/bhlhe_manuscript (no license), Zenodo 10516418 (CC-BY-4.0)

Status: code verified, 16 files readable, 2 matches

[29525] doi:10.1038/s41586-024-07109-5 [paper, repository]

A concerted neuron-astrocyte program declines in ageing and schizophrenia.

Journal: Nature

Authors' code: KellyCahill/Circadian-Analysis- (GPL-3.0), dylkot/cnmf (MIT), app.terra.bio (no license), broadinstitute/Drop-seq (MIT), broadinstitute/Osprey (MIT)

Status: code verified, 791 files readable, 4 matches

[29526] doi:10.1038/s41586-024-07139-z [paper, repository]

Subicular neurons encode concave and convex geometries.

Journal: Nature

Authors' code: fordanic/image-registration (GPL-3.0), yanjuns/Sun_et_al_2024_Nature (no license)

Status: code verified, 829 files readable, 17 matches

[29527] doi:10.1038/s41586-024-07144-2 [paper, data]

A vagal reflex evoked by airway closure.

Journal: Nature

Status: data only, 1 dataset cited

[29528] doi:10.1038/s41598-024-55652-y [paper, repository]

Visual features are processed before navigational affordances in the human brain.

Journal: Scientific reports

Authors' code: OSF wz4ha (no license)

Status: code verified, 3 files readable, 2 matches

[29529] doi:10.1038/s41598-024-56071-9 [paper]

Sex-specific associations of serum cortisol with brain biomarkers of Alzheimer's risk.

Journal: Scientific reports

Status: code on request

[29530] doi:10.1038/s41598-024-56139-6 [paper, repository]

Spectrotemporal cues and attention jointly modulate fMRI network topology for sentence and melody perception.

Journal: Scientific reports

Authors' code: OSF merwk (no license)

Status: empty repository

[29531] doi:10.1073/pnas.2308401121 [paper, data]

Generation of human excitatory forebrain neurons by cooperative binding of proneural NGN2 and homeobox factor EMX1.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[29532] doi:10.1073/pnas.2310044121 [paper, repository]

Insights into hippocampal perfusion using high-resolution, multi-modal 7T MRI.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: royhaast/hippocampal_perfusion (no license), pyushkevich/greedy (Apache-2.0), physimals/oxasl (Apache-2.0), ofgulban/segmentator (BSD-3-Clause), Zenodo 10644517 (CC-BY-4.0)

Status: code verified, 248 files readable, 5 matches

[29533] doi:10.1073/pnas.2313743121 [paper, repository]

Common modular architecture across diverse cortical areas in early development.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: SmithNeuroLab/multiarea (no license)

Status: code verified, 5 files readable, 3 matches

[29534] doi:10.1089/neur.2023.0102 [paper]

Exploiting Natural Language Processing to Unveil Topics and Trends of Traumatic Brain Injury Research.

Journal: Neurotrauma reports

Status: code on request

[29535] doi:10.1093/pnasnexus/pgae092 [paper, repository]

Cocaine diminishes functional network robustness and destabilizes the energy landscape of neuronal activity in the medial prefrontal cortex.

Journal: PNAS nexus

Authors' code: compu-flair/BrainConnectivityAndStability (no license)

Status: code verified, 4 files readable, 2 matches

[29536] doi:10.1117/1.nph.11.2.021005 [paper]

Efficient opto- and chemogenetic control in a single molecule driven by FRET-modified bioluminescence.

Journal: Neurophotonics

Status: code on request

[29537] doi:10.1126/sciadv.adi2525 [paper, repository]

Neural dynamics of predictive timing and motor engagement in music listening.

Journal: Science advances

Authors' code: DCP-INS/Groove (no license)

Status: code verified, 21 files readable, 4 matches

[29538] doi:10.1128/jvi.01858-23 [paper, repository]

Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice.

Journal: Journal of virology

Authors' code: ncbi/sra-tools (other), Zenodo 10551298 (CC-BY-4.0)

Status: code verified, 1,661 files readable, 4 matches

[29539] doi:10.1162/imag_a_00102 [paper, repository]

Mapping tissue microstructure of brain white matter in vivo in health and disease using diffusion MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: NYU-DiffusionMRI/SMI (no license)

Status: code verified, 4 files readable, 4 matches

[29540] doi:10.1162/imag_a_00104 [paper, repository]

Quantifying human gray matter microstructure using neurite exchange imaging (NEXI) and 300 mT/m gradients.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Mic-map/nexi (Apache-2.0)

Status: code verified, 31 files readable, 3 matches

[29541] doi:10.1371/journal.pcbi.1011903 [paper, repository]

Bifurcations and bursting in the Epileptor.

Journal: PLoS computational biology

Authors' code: supp:PMC10947678/pcbi.1011903.s001.zip (no license)

Status: code verified, 27 files readable, 8 matches

[29542] doi:10.1371/journal.pone.0291186 [paper, data]

A scoping review on the use of consumer-grade EEG devices for research.

Journal: PloS one

Status: data only, 1 dataset cited

[29543] doi:10.3389/fnimg.2024.1341607 [paper, data]

Reduced white matter maturation in the central auditory system of children living with HIV.

Journal: Frontiers in neuroimaging

Status: data only, 2 datasets cited

[29544] doi:10.3389/fnins.2024.1291053 [paper, repository]

SLoN: a spiking looming perception network exploiting neural encoding and processing in ON/OFF channels.

Journal: Frontiers in neuroscience

Authors' code: fuqinbing/source-code-and-videos-for-SLN-model (no license)

Status: empty repository, 1 file readable

[29545] doi:10.3389/fnins.2024.1309075 [paper, repository]

Slowing Alzheimer's disease progression through probiotic supplementation.

Journal: Frontiers in neuroscience

Authors' code: qiime2/q2-taxa (BSD-3-Clause)

Status: code verified, 36 files readable

[29546] doi:10.7554/elife.87126 [paper, repository]

Dorsolateral prefrontal activity supports a cognitive space organization of cognitive control.

Journal: eLife

Authors' code: OSF 4b3wd (no license)

Status: code verified, 1 file readable

Tuesday, 5 March 2024 (33 papers, 22 on this page)

[29547] doi:10.1007/s00415-024-12261-z [paper]

Supra- and infra-tentorial degeneration patterns in primary lateral sclerosis: a multimodal longitudinal neuroradiology study.

Journal: Journal of neurology

Status: code on request

[29548] doi:10.1016/j.isci.2024.109396 [paper]

A novel Na_v1.8-FLPo driver mouse for intersectional genetics to uncover the functional significance of primary sensory neuron diversity.

Journal: iScience

Status: code on request

[29549] doi:10.1016/j.jaac.2024.02.010 [paper, data]

Modeling Shared and Specific Variances of Irritability, Inattention, and Hyperactivity Yields Novel Insights Into White Matter Perturbations.

Journal: Journal of the American Academy of Child and Adolescent Psychiatry

Status: data only, 1 dataset cited

[29550] doi:10.1016/j.ynirp.2024.100200 [paper, data]

Deficient sleep, altered hypothalamic functional connectivity, depression and anxiety in cigarette smokers.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

[29551] doi:10.1038/s41467-024-45679-0 [paper, repository]

Improved modeling of human vision by incorporating robustness to blur in convolutional neural networks.

Journal: Nature communications

Authors' code: hendrycks/robustness (Apache-2.0), bethgelab/model-vs-human (no license), OSF upf5w (no license), hojin89/BlurTraining (no license), Zenodo 10468454 (CC-BY-4.0)

Status: code verified, 132 files readable, 13 matches

[29552] doi:10.1038/s41467-024-46057-6 [paper, repository]

Neuronal miR-9 promotes HSV-1 epigenetic silencing and latency by repressing Oct-1 and Onecut family genes.

Journal: Nature communications

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable, 1 match

[29553] doi:10.1038/s41467-024-46245-4 [paper, repository]

Janus microparticles-based targeted and spatially-controlled piezoelectric neural stimulation via low-intensity focused ultrasound.

Journal: Nature communications

Authors' code: erdosty/pemps (no license)

Status: code verified, 5 files readable, 1 match

[29554] doi:10.1038/s41531-024-00669-3 [paper, repository]

Oscillatory and non-oscillatory features of the magnetoencephalic sensorimotor rhythm in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: natmegsweden/PD_beta_bursts2 (GPL-3.0)

Status: code verified, 36 files readable, 12 matches

[29555] doi:10.1038/s41537-024-00453-5 [paper, repository]

Genetic overlap between schizophrenia and cognitive performance.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: precimed/mixer (GPL-3.0), precimed/pleiofdr (GPL-3.0), fuma.ctglab.nl (no license), biit.cs.ut.ee/gprofiler/gost (no license)

Status: code verified, 55 files readable, 2 matches

[29556] doi:10.1038/s41593-024-01575-w [paper, repository]

Population coding of strategic variables during foraging in freely moving macaques.

Journal: Nature neuroscience

Authors' code: figshare 24762996 (CC-BY-4.0)

Status: code verified

[29557] doi:10.1038/s41598-024-56090-6 [paper, data]

Computer programmers show distinct, expertise-dependent brain responses to violations in form and meaning when reading code.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29558] doi:10.1038/s42003-024-05918-y [paper]

Differential functional organization of amygdala-medial prefrontal cortex networks in macaque and human.

Journal: Communications biology

Status: code on request

[29559] doi:10.1038/s42003-024-05949-5 [paper, repository]

Hippocampal subfield plasticity is associated with improved spatial memory.

Journal: Communications biology

Authors' code: NeuroLuke/BoeckerCommunicationsBiology2024 (GPL-3.0)

Status: code verified, 6 files readable, 1 match

[29560] doi:10.1038/s42255-024-01001-2 [paper, repository]

Neuron-astrocyte metabolic coupling facilitates spinal plasticity and maintenance of inflammatory pain.

Journal: Nature metabolism

Authors' code: wambroziak/Neuron_astrocyte_metabolic_coupling_ephys (no license)

Status: empty repository

[29561] doi:10.1073/pnas.2310766121 [paper, repository]

Diverging neural dynamics for syntactic structure building in naturalistic speaking and listening.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF qjmky (no license)

Status: code verified, 9 files readable, 7 matches

[29562] doi:10.1093/nsr/nwae082 [paper]

Control of defensive behavior by the nucleus of Darkschewitsch GABAergic neurons.

Journal: National science review

Status: code on request

[29563] doi:10.1186/s12916-024-03314-1 [paper, repository]

TBK1, a prioritized drug repurposing target for amyotrophic lateral sclerosis: evidence from druggable genome Mendelian randomization and pharmacological verification in vitro.

Journal: BMC medicine

Authors' code: clagiamba/moloc (no license)

Status: code verified, 20 files readable, 1 match

[29564] doi:10.1186/s13287-023-03624-w [paper, data]

Mesenchymal stem/stromal cells from human pluripotent stem cell-derived brain organoid enhance the ex vivo expansion and maintenance of hematopoietic stem/progenitor cells.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[29565] doi:10.1371/journal.pbio.3002512 [paper, data]

Cross-frequency coupling in cortico-hippocampal networks supports the maintenance of sequential auditory information in short-term memory.

Journal: PLoS biology

Status: data only, 1 dataset cited

[29566] doi:10.1371/journal.pcbi.1011926 [paper, repository]

Unsupervised learning of perceptual feature combinations.

Journal: PLoS computational biology

Authors' code: supp:PMC10942261/pcbi.1011926.s003.zip (no license)

Status: code verified, 34 files readable, 2 matches

[29567] doi:10.3389/fmicb.2024.1337368 [paper, repository]

Metabolites: a converging node of host and microbe to explain meta-organism.

Journal: Frontiers in microbiology

Authors' code: borenstein-lab/MIMOSA (no license), biobakery/humann (MIT), biobakery/maaslin2_benchmark (no license)

Status: code verified, 118 files readable, 1 match

[29568] doi:10.3389/fnbeh.2024.1286872 [paper, data]

Prenatal and postnatal methamphetamine exposure alters prefrontal cortical gene expression and behavior in mice.

Journal: Frontiers in behavioral neuroscience

Status: data only, 1 dataset cited

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