Every paper, by date: page 129

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 129 of 200: 9 April 2024 to 1 April 2024.

Tuesday, 9 April 2024 (30 papers, 5 on this page)

[28673] doi:10.5194/mr-5-21-2024 [paper, repository]

Lipid removal in deuterium metabolic imaging (DMI) using spatial prior knowledge.

Journal: Magnetic resonance (Gottingen, Germany)

Authors' code: Zenodo 10932507 (CC-BY-4.0), radegraaf/dmiwizard (other)

Status: code verified, 4 files readable

[28674] doi:10.7554/elife.89570 [paper, repository]

Neural correlates of perceptual similarity masking in primate V1.

Journal: eLife

Authors' code: Zenodo 10815850 (CC-BY-4.0)

Status: code verified, 9 files readable, 4 matches

[28675] doi:10.7554/elife.90997 [paper, repository]

Dysfunctional hippocampal-prefrontal network underlies a multidimensional neuropsychiatric phenotype following early-life seizure.

Journal: eLife

Authors' code: rafaruggiero/Ruggiero-eLife2024 (GPL-3.0)

Status: code verified, 9 files readable, 12 matches

[28676] doi:10.7554/elife.91465 [paper, repository]

Phasic locus coeruleus activity enhances trace fear conditioning by increasing dopamine release in the hippocampus.

Journal: eLife

Authors' code: jhwilmot/Wilmot-et-al.-2023-Data (GPL-3.0), kpeez/fiberphotopy (MIT)

Status: code verified, 45 files readable, 2 matches

[28677] doi:10.7717/peerj.17078 [paper, repository]

Integration of temporal & spatial properties of dynamic functional connectivity based on two-directional two-dimensional principal component analysis for disease analysis.

Journal: PeerJ

Authors' code: lvshand/code (no license)

Status: empty repository

Monday, 8 April 2024 (32 papers)

[28678] doi:10.1002/ame2.12406 [paper, data]

High expression of SULF1 is associated with adverse prognosis in breast cancer brain metastasis.

Journal: Animal models and experimental medicine

Status: data only, 1 dataset cited

[28679] doi:10.1016/j.celrep.2024.114071 [paper, repository]

Neuronal population representation of human emotional memory.

Journal: Cell reports

Authors' code: jniediek/combinato (MIT), gin.g-node.org/dfetterhoff/emotional_memory_neuronal_data (no license), dustinf1989/emotional_memory_neuronal_analyses (no license)

Status: code verified, 2,102 files readable, 8 matches

[28680] doi:10.1016/s2214-109x(24)00093-7 [paper, repository]

The burden of neurological conditions in north Africa and the Middle East, 1990-2019: a systematic analysis of the Global Burden of Disease Study 2019.

Journal: The Lancet. Global health

Authors' code: ghdx.healthdata.org/gbd-2019/code (no license)

Status: code verified

[28681] doi:10.1038/s41467-024-47345-x [paper, repository]

Multicore fiber optic imaging reveals that astrocyte calcium activity in the mouse cerebral cortex is modulated by internal motivational state.

Journal: Nature communications

Authors' code: DEBLab01/NC2023 (no license)

Status: code verified

[28682] doi:10.1038/s41590-024-01778-0 [paper, repository]

Large-scale phenotyping of patients with long COVID post-hospitalization reveals mechanistic subtypes of disease.

Journal: Nature immunology

Authors' code: isaric4c/wiki (no license), SurgicalInformatics/cocin_cc (no license), ClaudiaEfstath/PHOSP_Olink_NatImm (no license)

Status: code verified, 4 files readable, 1 match

[28683] doi:10.1038/s41592-024-02232-7 [paper, repository]

Spike sorting with Kilosort4.

Journal: Nature methods

Authors' code: int-brain-lab/mtscomp (BSD-3-Clause), Zenodo 10863771 (CC-BY-4.0)

Status: code verified, 52 files readable, 17 matches

[28684] doi:10.1038/s41593-024-01615-5 [paper, repository]

Neuronal activity rapidly reprograms dendritic translation via eIF4G2:uORF binding.

Journal: Nature neuroscience

Authors' code: alexfields/ORF-RATER (BSD-3-Clause)

Status: code verified, 11 files readable

[28685] doi:10.1038/s41597-024-03197-0 [paper, repository]

A large normative connectome for exploring the tractographic correlates of focal brain interventions.

Journal: Scientific data

Authors' code: netstim/leaddbs (GPL-3.0), Germann-lab/dTOR-985-Connectome (no license), doi:10.6084/m9.figshare.c.6844890.v1 (no license)

Status: code verified, 2,003 files readable, 8 matches

[28686] doi:10.1038/s41597-024-03200-8 [paper, data]

EEG and fNIRS datasets based on Stroop task during two weeks of high-altitude exposure in new immigrants.

Journal: Scientific data

Status: data only, 1 dataset cited

[28687] doi:10.1038/s41598-024-57744-1 [paper, repository]

Concept-drifts adaptation for machine learning EEG epilepsy seizure prediction.

Journal: Scientific reports

Authors' code: EDavidP/Concept-Drifts-Adaptation-For-Machine-Learning-EEG-Epilepsy-Seizure-Prediction (no license)

Status: code verified, 20 files readable, 1 match

[28688] doi:10.1038/s41598-024-58812-2 [paper, repository]

A deep learning approach for fast muscle water T2 mapping with subject specific fat T2 calibration from multi-spin-echo acquisitions.

Journal: Scientific reports

Authors' code: barma7/Deep_Learning_for_Muscle_T2_mapping (no license)

Status: code verified, 32 files readable, 6 matches

[28689] doi:10.1038/s42256-024-00824-8 [paper, repository]

A neural speech decoding framework leveraging deep learning and speech synthesis.

Journal: Nature machine intelligence

Authors' code: flinkerlab/neural_speech_decoding (GPL-3.0), Zenodo 10719428 (CC-BY-4.0)

Status: code verified, 130 files readable, 9 matches

[28690] doi:10.1073/pnas.2309975121 [paper, data]

The time course of feature-selective attention inside and outside the focus of spatial attention.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[28691] doi:10.1073/pnas.2317783121 [paper, data]

Developmental trajectories of GABAergic cortical interneurons are sequentially modulated by dynamic <i>FoxG1</i> expression levels.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 3 datasets cited

[28692] doi:10.1080/20008066.2024.2335793 [paper, data]

Circulating PACAP levels are associated with altered imaging measures of entorhinal cortex neurite density in posttraumatic stress disorder.

Journal: European journal of psychotraumatology

Status: data only, 1 dataset cited

[28693] doi:10.1159/000535869 [paper, data]

Personalized Paths: Unlocking Alzheimer's via the Gut-Brain Axis.

Journal: Visceral medicine

Status: data only, 1 dataset cited

[28694] doi:10.1162/imag_a_00124 [paper, repository]

Endogenous preparatory control is associated with increased interaction between default mode and dorsal attention networks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: connectlab/endog_prep_control (no license)

Status: code verified, 3 files readable, 1 match

[28695] doi:10.1162/imag_a_00125 [paper, repository]

Optimization and validation of the DESIGNER preprocessing pipeline for clinical diffusion MRI in white matter aging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: NYU-DiffusionMRI/DESIGNER-v2 (MIT)

Status: code verified, 51 files readable, 4 matches

[28696] doi:10.1162/imag_a_00129 [paper, repository]

Dorso-medial prefrontal cortex responses to social smiles predict sociability in early human development.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF q5p3j (no license)

Status: empty repository

[28697] doi:10.1162/imag_a_00130 [paper, data]

Sensory modality and information domain contribute jointly to dual-task interference between working memory and perceptual processing.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[28698] doi:10.1162/imag_a_00131 [paper, repository]

Can prediction error explain predictability effects on the N1 during picture-word verification?

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 389ce (no license), gin.g-node.org/jackedtaylor/picture-word-n1 (no license)

Status: code verified, 11 files readable, 5 matches

[28699] doi:10.1186/s10194-024-01754-x [paper]

Alterations of the alpha rhythm in visual snow syndrome: a case-control study.

Journal: The journal of headache and pain

Status: code on request

[28700] doi:10.1186/s12951-024-02414-7 [paper, data]

Anti-EGFR ScFv functionalized exosomes delivering LPCAT1 specific siRNAs for inhibition of lung cancer brain metastases.

Journal: Journal of nanobiotechnology

Status: data only, 1 dataset cited

[28701] doi:10.1186/s12987-024-00526-8 [paper, data]

Fasting upregulates the monocarboxylate transporter MCT1 at the rat blood-brain barrier through PPAR δ activation.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[28702] doi:10.1186/s12987-024-00533-9 [paper, data]

SARS-CoV-2 causes dysfunction in human iPSC-derived brain microvascular endothelial cells potentially by modulating the Wnt signaling pathway.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[28703] doi:10.1186/s40478-024-01763-6 [paper, data]

Ibrutinib disrupts blood-tumor barrier integrity and prolongs survival in rodent glioma model.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[28704] doi:10.1242/jeb.246708 [paper, repository]

Turbidity drives plasticity in the eyes and brains of an African cichlid.

Journal: The Journal of experimental biology

Authors' code: Zenodo 8310033 (MIT), Zenodo 8310034 (MIT)

Status: code verified, 6 files readable, 3 matches

[28705] doi:10.3389/fnagi.2024.1376764 [paper, data]

The role of the nucleus basalis of Meynert in neuromodulation therapy: a systematic review from the perspective of neural network oscillations.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[28706] doi:10.3389/fneur.2024.1367973 [paper, data]

Effect of Dl-3-n-Butylphthalide on olfaction in rotenone-induced Parkinson's rats.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[28707] doi:10.3389/fpsyg.2024.1349918 [paper, data]

Effects of self-efficacy on frontal midline theta power and golf putting performance.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[28708] doi:10.3758/s13423-024-02495-3 [paper]

Are neuronal mechanisms of attention universal across human sensory and motor brain maps?

Journal: Psychonomic bulletin & review

Status: code on request

[28709] doi:10.7554/elife.89482 [paper, repository]

Transcriptomic atlas of midbrain dopamine neurons uncovers differential vulnerability in a Parkinsonism lesion model.

Journal: eLife

Authors' code: Moldia (no license), behyag/perlmann_lab_eLife2024 (MIT)

Status: code verified, 15 files readable, 36 matches

Sunday, 7 April 2024 (4 papers)

[28710] doi:10.1016/j.neuroimage.2024.120601 [paper, repository]

High-fidelity intravoxel incoherent motion parameter mapping using locally low-rank and subspace modeling.

Journal: NeuroImage

Authors' code: dfm/emcee (MIT), afinkelstein65/HIFIVIM (no license)

Status: code verified, 64 files readable, 3 matches

[28711] doi:10.1038/s41598-024-58624-4 [paper, repository]

Community detection in directed weighted networks using Voronoi partitioning.

Journal: Scientific reports

Authors' code: molnarb14/directed-weighted-community-detection-voronoi (no license)

Status: code verified, 6 files readable, 2 matches

[28712] doi:10.1038/s41598-024-58697-1 [paper, data]

Art perception is affected by negative knowledge about famous and unknown artists.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28713] doi:10.21037/qims-23-1594 [paper, repository]

Multimodal transformer graph convolution attention isomorphism network (MTCGAIN): a novel deep network for detection of insomnia disorder.

Journal: Quantitative imaging in medicine and surgery

Authors' code: YuloongWang/MTGCAIN (no license)

Status: code verified, 9 files readable, 3 matches

Saturday, 6 April 2024 (13 papers)

[28714] doi:10.1007/s00429-024-02785-5 [paper, data]

Wernicke's functional neuroanatomy model of language turns 150: what became of its psychological reflex arcs?

Journal: Brain structure & function

Status: data only, 1 dataset cited

[28715] doi:10.1016/j.heliyon.2024.e29090 [paper, data]

FNDC5/irisin mediates the protective effects of Innovative theta-shaking exercise on mouse memory.

Journal: Heliyon

Status: data only, 1 dataset cited

[28716] doi:10.1016/j.isci.2024.109679 [paper, repository]

The lactate receptor HCAR1: A key modulator of epileptic seizure activity.

Journal: iScience

Authors' code: Zenodo 10838588 (CC-BY-4.0), luthilab/IntanLuthiLab (no license), Intan-Technologies/Intan-RHX (GPL-3.0)

Status: code verified, 357 files readable, 3 matches

[28717] doi:10.1016/j.isci.2024.109681 [paper]

NMDAR-mediated activation of pannexin1 channels contributes to the detonator properties of hippocampal mossy fiber synapses.

Journal: iScience

Status: code on request

[28718] doi:10.1016/j.neuroimage.2024.120603 [paper, repository]

Fetal brain MRI atlases and datasets: A review.

Journal: NeuroImage

Authors' code: gift-surg/NiftyMIC (BSD-3-Clause), Medical-Image-Analysis-Laboratory/mialsuperresolutiontoolkit (BSD-3-Clause), SVRTK/svrtk-docker-gpu (no license), daviddmc/NeSVoR (MIT)

Status: code verified, 390 files readable

[28719] doi:10.1016/j.nicl.2024.103602 [paper, repository]

Discourse- and lesion-based aphasia quotient estimation using machine learning.

Journal: NeuroImage. Clinical

Authors' code: rordenlab/spmscripts (no license)

Status: code verified, 139 files readable, 3 matches

[28720] doi:10.1016/j.ohx.2024.e00522 [paper, repository]

A compact setup for behavioral studies measuring limb acceleration.

Journal: HardwareX

Authors' code: Zenodo 10014129 (CC-BY-4.0)

Status: code verified

[28721] doi:10.1016/j.omton.2024.200799 [paper]

Enhanced therapeutic efficacy for glioblastoma immunotherapy with an oncolytic herpes simplex virus armed with anti-PD-1 antibody and IL-12.

Journal: Molecular therapy. Oncology

Status: code on request

[28722] doi:10.1038/s41386-024-01858-7 [paper, data]

The selective D₃Receptor antagonist VK4-116 reverses loss of insight caused by self-administration of cocaine in rats.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[28723] doi:10.1038/s41467-024-46921-5 [paper, repository]

Timing along the cardiac cycle modulates neural signals of reward-based learning.

Journal: Nature communications

Authors' code: efouragnan/EEG-CRS_learning (no license), Zenodo 10370532 (CC-BY-4.0)

Status: code verified, 59 files readable, 17 matches

[28724] doi:10.1038/s41467-024-46926-0 [paper, repository]

EEG decoders track memory dynamics.

Journal: Nature communications

Authors' code: pennmem/EEG-memory-dynamics-public (no license)

Status: code verified, 9 files readable, 15 matches

[28725] doi:10.1038/s41598-024-58819-9 [paper]

Expression of GCaMP6s in the dentate gyrus induces tonic-clonic seizures.

Journal: Scientific reports

Status: code on request

[28726] doi:10.1038/s42003-024-06115-7 [paper, repository]

Distinct forms of structural plasticity of adult-born interneuron spines in the mouse olfactory bulb induced by different odor learning paradigms.

Journal: Communications biology

Authors' code: Zenodo 10622371 (CC0-1.0)

Status: code verified

Friday, 5 April 2024 (24 papers)

[28727] doi:10.1016/j.celrep.2024.114028 [paper, data]

Functional organization of posterior parietal cortex circuitry based on inferred information flow.

Journal: Cell reports

Status: code on request, 1 dataset cited

[28728] doi:10.1016/j.celrep.2024.114056 [paper]

Female-specific dysfunction of sensory neocortical circuits in a mouse model of autism mediated by mGluR5 and estrogen receptor α.

Journal: Cell reports

Status: code on request

[28729] doi:10.1016/j.heliyon.2024.e28960 [paper]

Integrated analysis of transcriptional changes in major depressive disorder: Insights from blood and anterior cingulate cortex.

Journal: Heliyon

Status: data only

[28730] doi:10.1016/j.isci.2024.109669 [paper, data]

<i>Streptococcus agalactiae</i> and <i>Escherichia coli</i> induce distinct effector γδ T cell responses during neonatal sepsis.

Journal: iScience

Status: code on request, 1 dataset cited

[28731] doi:10.1017/wtc.2024.5 [paper, repository]

GLULA: Linear attention-based model for efficient human activity recognition from wearable sensors.

Journal: Wearable technologies

Authors' code: Etzelkut/HAR-proj (no license)

Status: empty repository, 1 file readable

[28732] doi:10.1038/s41467-024-46996-0 [paper, repository]

Subcellular pathways through VGluT3-expressing mouse amacrine cells provide locally tuned object-motion-selective signals in the retina.

Journal: Nature communications

Authors' code: MorganLabShare/VG3_2023 (MIT), sites.wustl.edu/morganlab/vg3-data-code-and-more (no license), Zenodo 10685346 (CC-BY-4.0)

Status: code verified, 4 files readable

[28733] doi:10.1038/s41531-024-00693-3 [paper, repository]

Modulation of subthalamic beta oscillations by movement, dopamine, and deep brain stimulation in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: neuromodulation/perceive (Apache-2.0)

Status: code verified, 87 files readable, 4 matches

[28734] doi:10.1038/s41598-024-58527-4 [paper, repository]

Refining outcome prediction after traumatic brain injury with machine learning algorithms.

Journal: Scientific reports

Authors' code: DavidUAS/Rostamilab (no license)

Status: empty repository

[28735] doi:10.1038/s41598-024-58671-x [paper, data]

A detailed 3D MRI brain atlas of the African lungfish Protopterus annectens.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28736] doi:10.1038/s42003-024-06096-7 [paper, repository]

Unsupervised deep representation learning enables phenotype discovery for genetic association studies of brain imaging.

Journal: Communications biology

Authors' code: ZhiGroup/DeepENDO (no license), figshare 25203230 (CC-BY-4.0), figshare 25203233 (CC-BY-4.0), figshare 2 (no license), figshare 25203224 (CC-BY-4.0), figshare 25148744 (GPL 3.0+)

Status: code verified, 22 files readable, 6 matches

[28737] doi:10.1038/s42003-024-06120-w [paper, data]

Catalytic-dependent and -independent roles of TET3 in the regulation of specific genetic programs during neuroectoderm specification.

Journal: Communications biology

Status: data only, 1 dataset cited

[28738] doi:10.1101/2024.04.05.588285 [paper, data]

Guardian of Excitability: Multifaceted Role of Galanin in Whole Brain Excitability

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[28739] doi:10.1113/ep091705 [paper, data]

Acute hypoalgesic, neurophysiological and perceptual responses to low-load blood flow restriction exercise and high-load resistance exercise.

Journal: Experimental physiology

Status: data only, 1 dataset cited

[28740] doi:10.1126/sciadv.adl4600 [paper, repository]

Adaptive functions of structural variants in human brain development.

Journal: Science advances

Authors' code: genomewiki.ucsc.edu/index.php/doblastzchainnet.pl (no license), Zenodo 10695454 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

[28741] doi:10.1155/2024/3746794 [paper, repository]

The Effect of Differentiation of Human Dental Pulp Stem Cells to Glial Cells on the Sensory Nerves of the Dental Pulp.

Journal: International journal of dentistry

Authors' code: bioconductor.org/packages/release (no license)

Status: code verified

[28742] doi:10.1162/imag_a_00126 [paper]

Testing PET-[ &lt;sup&gt;11&lt;/sup&gt; C]ABP688 as a tool to quantify glutamate release &lt;i&gt;in vivo&lt;/i&gt;.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[28743] doi:10.1186/s12984-024-01342-9 [paper, data]

Brain-machine interface based on deep learning to control asynchronously a lower-limb robotic exoskeleton: a case-of-study.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

[28744] doi:10.1371/journal.pone.0300575 [paper, repository]

White matter tracts adjacent to the human cingulate sulcus visual area (CSv).

Journal: PloS one

Authors' code: vistalab/vistasoft (no license), OSF sfamu (no license)

Status: code verified, 2,001 files readable, 4 matches

[28745] doi:10.3389/fncel.2024.1366098 [paper, data]

Micro-and mesoscale aspects of neurodegeneration in engineered human neural networks carrying the LRRK2 G2019S mutation.

Journal: Frontiers in cellular neuroscience

Status: data only, 2 datasets cited

[28746] doi:10.3389/fnmol.2024.1376681 [paper, repository]

Perinatal exposure to atazanavir-based antiretroviral regimens in a mouse model leads to differential long-term motor and cognitive deficits dependent on the NRTI backbone.

Journal: Frontiers in molecular neuroscience

Authors' code: Mouse-Imaging-Centre/RMINC (other)

Status: code verified, 133 files readable, 1 match

[28747] doi:10.3389/fradi.2024.1283392 [paper, repository]

Fusion of biomedical imaging studies for increased sample size and diversity: a case study of brain MRI.

Journal: Frontiers in radiology

Authors' code: iitzco/deepbrain (MIT), IBM/MBID-db (Apache-2.0)

Status: code verified, 121 files readable, 11 matches

[28748] doi:10.3389/frdem.2024.1362230 [paper, repository]

Combining artificial neural networks and a marginal structural model to predict the progression from depression to Alzheimer's disease.

Journal: Frontiers in dementia

Authors' code: ers.usda.gov/data-products/rural-urban-continuum-codes (no license)

Status: code verified

[28749] doi:10.7554/elife.86805 [paper, repository]

Antipsychotic drugs selectively decorrelate long-range interactions in deep cortical layers.

Journal: eLife

Authors' code: Zenodo 10783459 (CC-BY-4.0), sourceforge.net/iris-scanning (no license)

Status: code verified

[28750] doi:10.7554/elife.89311 [paper, repository]

Finding structure during incremental speech comprehension.

Journal: eLife

Authors' code: OSF 7u8jp (no license)

Status: code verified, 25 files readable, 4 matches

Thursday, 4 April 2024 (31 papers)

[28751] doi:10.1002/alz.13806 [paper, data]

Early molecular events of autosomal-dominant Alzheimer's disease in marmosets with PSEN1 mutations.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[28752] doi:10.1016/j.celrep.2024.114017 [paper, repository]

Neural assemblies coordinated by cortical waves are associated with waking and hallucinatory brain states.

Journal: Cell reports

Authors' code: proektlab/WaveAnalysis (no license), mullerlab/wave-matlab (GPL-3.0)

Status: code verified, 42 files readable, 6 matches

[28753] doi:10.1016/j.celrep.2024.114061 [paper, repository]

Human brain small extracellular vesicles contain selectively packaged, full-length mRNA.

Journal: Cell reports

Authors' code: Magdoll/cDNA_Cupcake (BSD-3-Clause)

Status: code verified, 99 files readable, 3 matches

[28754] doi:10.1016/j.celrep.2024.114080 [paper]

Distributional coding of associative learning in discrete populations of midbrain dopamine neurons.

Journal: Cell reports

Status: code on request

[28755] doi:10.1016/j.isci.2024.109662 [paper, repository]

Regional homogeneity as a marker of sensory cortex dysmaturity in preterm infants.

Journal: iScience

Authors' code: Zenodo 10818502 (CC-BY-4.0), srd49/dbi (no license)

Status: code verified, 14 files readable, 2 matches

[28756] doi:10.1016/j.jbc.2024.107263 [paper, data]

JNK activity modulates postsynaptic scaffold protein SAP102 and kainate receptor dynamics in dendritic spines.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[28757] doi:10.1016/j.neurot.2024.e00353 [paper, data]

Regulating Lars2 in mitochondria: A potential Alzheimer's therapy by inhibiting tau phosphorylation.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[28758] doi:10.1016/j.stemcr.2024.03.003 [paper, data]

Early neural specification of stem cells is mediated by a set of SOX2-dependent neural-associated enhancers.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[28759] doi:10.1038/s41380-024-02541-5 [paper, data]

Loss of mGlu&lt;sub&gt;5&lt;/sub&gt; receptors in somatostatin-expressing neurons alters negative emotional states.

Journal: Molecular psychiatry

Status: code on request, 1 dataset cited

[28760] doi:10.1038/s41398-024-02861-8 [paper]

The characteristic patterns of individual brain susceptibility networks underlie Alzheimer's disease and white matter hyperintensity-related cognitive impairment.

Journal: Translational psychiatry

Status: code on request

[28761] doi:10.1038/s41398-024-02874-3 [paper, repository]

Neuron enriched extracellular vesicles' MicroRNA expression profiles as a marker of early life alcohol consumption.

Journal: Translational psychiatry

Authors' code: OSF gaw79 (no license)

Status: code found, still to be checked

[28762] doi:10.1038/s41419-024-06534-8 [paper, data]

Genetic and pharmacological reduction of CDK14 mitigates synucleinopathy.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[28763] doi:10.1038/s41467-024-47154-2 [paper, repository]

Context-aware deep learning enables high-efficacy localization of high concentration microbubbles for super-resolution ultrasound localization microscopy.

Journal: Nature communications

Authors' code: illyrs2/LOCA-ULM (GPL-3.0), Zenodo 10769339 (CC-BY-4.0)

Status: code verified, 12 files readable

[28764] doi:10.1038/s41588-024-01694-x [paper, repository]

Protein-truncating variants in BSN are associated with severe adult-onset obesity, type 2 diabetes and fatty liver disease.

Journal: Nature genetics

Authors' code: mrcepid-rap (no license), mariachukanova1/BSN_paper (no license), Zenodo 10687754 (CC-BY-4.0)

Status: code verified, 2 files readable

[28765] doi:10.1038/s41598-024-58298-y [paper, data]

The influence of the precuneus on the medial temporal cortex determines the subjective quality of memory during the retrieval of naturalistic episodes.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28766] doi:10.1038/s41598-024-58579-6 [paper, data]

Enhancing 7-dehydrocholesterol suppresses brain ferroptosis and tissue injury after neonatal hypoxia-ischemia.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28767] doi:10.1093/nsr/nwae124 [paper, repository]

The flattening of spacetime hierarchy of the <i>N,N</i>-dimethyltryptamine brain state is characterized by harmonic decomposition of spacetime (HADES) framework.

Journal: National science review

Authors' code: jvohryzek/HADES (no license)

Status: code verified, 26 files readable, 3 matches

[28768] doi:10.1117/1.nph.11.2.024207 [paper]

Blue-shifted genetically encoded Ca&lt;sup&gt;2+&lt;/sup&gt; indicator with enhanced two-photon absorption.

Journal: Neurophotonics

Status: code on request

[28769] doi:10.1159/000538060 [paper, data]

The Relationship between Neurobiological Function and Inflammation in Depressed Children and Adolescents: A Scoping Review.

Journal: Neuropsychobiology

Status: data only, 1 dataset cited

[28770] doi:10.1186/s12906-024-04433-1 [paper, repository]

Cognitive enrichment through art: a randomized controlled trial on the effect of music or visual arts group practice on cognitive and brain development of young children.

Journal: BMC complementary medicine and therapies

Authors' code: fil.ion.ucl.ac.uk/spm (no license)

Status: code verified

[28771] doi:10.1186/s40708-024-00223-0 [paper, repository]

Examining the reliability of brain age algorithms under varying degrees of participant motion.

Journal: Brain informatics

Authors' code: james-cole/brainageR (LGPL-3.0), tobias-kaufmann/brainage (no license), estenhl/pyment-public (CC-BY-NC-4.0)

Status: code verified, 78 files readable, 1 match

[28772] doi:10.1371/journal.pcbi.1011277 [paper, repository]

Mesoscale simulations predict the role of synergistic cerebellar plasticity during classical eyeblink conditioning.

Journal: PLoS computational biology

Authors' code: AliceGem/mesoscale_simulations_cebc (GPL-3.0)

Status: code verified, 8 files readable, 9 matches

[28773] doi:10.1371/journal.pcbi.1012012 [paper, repository]

DBDNMF: A Dual Branch Deep Neural Matrix Factorization method for drug response prediction.

Journal: PLoS computational biology

Authors' code: labiip/DBDNMF-ADRP (GPL-3.0)

Status: code verified, 56 files readable, 2 matches

[28774] doi:10.1371/journal.pmed.1004263 [paper, data]

Long-term outcomes of hospitalized patients with SARS-CoV-2/COVID-19 with and without neurological involvement: 3-year follow-up assessment.

Journal: PLoS medicine

Status: data only, 3 datasets cited

[28775] doi:10.1371/journal.pone.0300539 [paper, repository]

The response of Dual-leucine zipper kinase (DLK) to nocodazole: Evidence for a homeostatic cytoskeletal repair mechanism.

Journal: PloS one

Authors' code: Chase-Mateusiak/DLK_rnaseq (no license), laura-devault/DLK_figures (no license)

Status: code verified, 18 files readable, 9 matches

[28776] doi:10.1371/journal.pone.0301268 [paper, data]

Induction of nitric oxide via humming does not improve short-term cognitive performance or influence emotional processing.

Journal: PloS one

Status: data only, 1 dataset cited

[28777] doi:10.3389/fcimb.2024.1358873 [paper, data]

Mast cell activation triggered by SARS-CoV-2 causes inflammation in brain microvascular endothelial cells and microglia.

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

[28778] doi:10.3389/fncel.2024.1367838 [paper, data]

Case report: Marked electroclinical improvement by fluoxetine treatment in a patient with <i>KCNT1</i>-related drug-resistant focal epilepsy.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[28779] doi:10.3389/fpsyt.2024.1386984 [paper]

Weakened effective connectivity between salience network and default mode network during resting state in adolescent depression.

Journal: Frontiers in psychiatry

Status: code on request

[28780] doi:10.7554/elife.93464 [paper, data]

A single pair of pharyngeal neurons functions as a commander to reject high salt in <i>Drosophila melanogaster</i>.

Journal: eLife

Status: data only, 1 dataset cited

[28781] doi:10.7554/elife.94765 [paper, data]

Activating SRC/MAPK signaling via 5-HT1A receptor contributes to the effect of vilazodone on improving thrombocytopenia.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 3 April 2024 (38 papers)

[28782] doi:10.1016/j.celrep.2024.113991 [paper, repository]

Tactile processing in mouse cortex depends on action context.

Journal: Cell reports

Authors' code: Zenodo 10783798 (CC-BY-4.0), oconnorlab/finkel_et_al_2024 (no license)

Status: code verified, 84 files readable, 10 matches

[28783] doi:10.1016/j.celrep.2024.114042 [paper, data]

Antagonism between neuropeptides and monoamines in a distributed circuit for pathogen avoidance.

Journal: Cell reports

Status: data only, 1 dataset cited

[28784] doi:10.1016/j.dcn.2024.101373 [paper]

Aperiodic EEG and 7T MRSI evidence for maturation of E/I balance supporting the development of working memory through adolescence.

Journal: Developmental cognitive neuroscience

Status: code on request

[28785] doi:10.1016/j.heliyon.2024.e28957 [paper, data]

Analysis of brain structural covariance network in Cushing disease.

Journal: Heliyon

Status: data only, 1 dataset cited

[28786] doi:10.1016/j.wnsx.2024.100378 [paper]

Why are clinical trials of deep brain stimulation terminated? An analysis of clinicaltrials.gov.

Journal: World neurosurgery: X

Status: code on request

[28787] doi:10.1016/j.xpro.2024.102945 [paper]

Phosphoinositide detection at synapses of fixed murine hippocampal neurons.

Journal: STAR protocols

Status: code on request

[28788] doi:10.1038/s41467-024-46625-w [paper, repository]

Shared inflammatory glial cell signature after stab wound injury, revealed by spatial, temporal, and cell-type-specific profiling of the murine cerebral cortex.

Journal: Nature communications

Authors' code: isdneuroimaging/mmqt (BSD-3-Clause), simonmfr/spata2 (gnu), NinkovicLab/Koupourtidou-Schwarz-et-al (no license), Zenodo 10619835 (CC-BY-4.0)

Status: code verified, 116 files readable, 10 matches

[28789] doi:10.1038/s41467-024-46827-2 [paper, repository]

Age-progressive interplay of HSP-proteostasis, ECM-cell junctions and biomechanics ensures C. elegans astroglial architecture.

Journal: Nature communications

Authors' code: git.embl.de/grp-cba/glia-volume-measurement (no license)

Status: code found, still to be checked

[28790] doi:10.1038/s41467-024-46975-5 [paper, repository]

Global spatiotemporal synchronizing structures of spontaneous neural activities in different cell types.

Journal: Nature communications

Authors' code: shih-liang/gssidnaim (MIT)

Status: code verified, 7 files readable

[28791] doi:10.1038/s41467-024-47255-y [paper, repository]

Dopamine control of social novelty preference is constrained by an interpeduncular-tegmentum circuit.

Journal: Nature communications

Authors' code: doi:10.7910/dvn/bxcyzs (no license)

Status: code found, still to be checked

[28792] doi:10.1038/s41586-024-07260-z [paper, data]

Ancestral allele of DNA polymerase gamma modifies antiviral tolerance.

Journal: Nature

Status: data only, 1 dataset cited

[28793] doi:10.1038/s41586-024-07283-6 [paper, data]

A brain-specific angiogenic mechanism enabled by tip cell specialization.

Journal: Nature

Status: data only, 6 datasets cited

[28794] doi:10.1038/s41593-024-01612-8 [paper, repository]

Centripetal integration of past events in hippocampal astrocytes regulated by locus coeruleus.

Journal: Nature neuroscience

Authors' code: PTRRupprecht/Drawing-ROIs-without-GUI (MIT), HelmchenLabSoftware/Centripetal_propagation_astrocytes (GPL-3.0), Zenodo 10420895 (CC-BY-4.0)

Status: code verified, 30 files readable

[28795] doi:10.1038/s41598-024-57917-y [paper, data]

HD-tDCS mitigates the executive vigilance decrement only under high cognitive demands.

Journal: Scientific reports

Status: data only, 2 datasets cited

[28796] doi:10.1038/s41598-024-58546-1 [paper, data]

Characterization of a new selective glucocorticoid receptor modulator with anorexigenic activity.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28797] doi:10.1038/s42003-024-06083-y [paper, repository]

Rhythmicity of neuronal oscillations delineates their cortical and spectral architecture.

Journal: Communications biology

Authors' code: palvalab/discovering_rhythmicity (no license)

Status: code verified, 39 files readable, 7 matches

[28798] doi:10.1038/s44271-024-00073-w [paper, repository]

Repeatedly experiencing the McGurk effect induces long-lasting changes in auditory speech perception.

Journal: Communications psychology

Authors' code: Zenodo 10689633 (MIT)

Status: code verified

[28799] doi:10.1055/a-2298-4593 [paper, data]

Beneficial Effects of Echinacoside on Cognitive Impairment and Diabetes in Type 2 Diabetic db/db Mice.

Journal: Experimental and clinical endocrinology & diabetes : official journal, German Society of Endocrinology [and] German Diabetes Association

Status: data only, 1 dataset cited

[28800] doi:10.1073/pnas.2320505121 [paper, data]

Complexin has a dual synaptic function as checkpoint protein in vesicle priming and as a promoter of vesicle fusion.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[28801] doi:10.1073/pnas.2321338121 [paper, data]

Timeless noncoding DNA contains cell-type preferential enhancers important for proper Drosophila circadian regulation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[28802] doi:10.1088/1741-2552/ad36e2 [paper, repository]

Galvanic vs. pulsatile effects on decision-making networks: reshaping the neural activation landscape.

Journal: Journal of neural engineering

Authors' code: pauladkisson/bam_microstim2 (no license)

Status: code verified, 47 files readable, 4 matches

[28803] doi:10.1093/braincomms/fcae095 [paper, repository]

Small fibre neuropathy in Fabry disease: a human-derived neuronal &lt;i&gt;in vitro&lt;/i&gt; disease model and pilot data.

Journal: Brain communications

Authors' code: line-profiler.readthedocs.io (no license)

Status: code verified

[28804] doi:10.1098/rsos.231620 [paper, repository]

Navigating sex and sex roles: deciphering sex-biased gene expression in a species with sex-role reversal (<i>Syngnathus typhle</i>).

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7124579 (no license)

Status: code found, still to be checked

[28805] doi:10.1101/2024.04.02.587825 [paper]

GLP-1R agonists activate human hypothalamic neurons

Journal: bioRxiv (preprint)

Status: code on request

[28806] doi:10.1126/sciadv.adk9315 [paper, repository]

Adaptive introgression reveals the genetic basis of a sexually selected syndrome in wall lizards.

Journal: Science advances

Authors' code: Zenodo 10396759 (CC-BY-4.0), nathaliefeiner/nigriventrissyndrome_2023 (no license)

Status: code verified, 52 files readable, 13 matches

[28807] doi:10.1126/sciadv.adn3784 [paper, repository]

Power-integrated, wireless neural recording systems on the cranium using a direct printing method for deep-brain analysis.

Journal: Science advances

Authors' code: Zenodo 10654840 (CC-BY-4.0)

Status: empty repository

[28808] doi:10.1152/jn.00456.2023 [paper, data]

Two contrasting mediodorsal thalamic circuits target the mouse medial prefrontal cortex.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[28809] doi:10.1159/000538090 [paper, data]

Trade-Offs in the Sensory Brain between Diurnal and Nocturnal Rodents.

Journal: Brain, behavior and evolution

Status: data only, 1 dataset cited

[28810] doi:10.1186/s12974-024-03073-z [paper, repository]

Cranial irradiation disrupts homeostatic microglial dynamic behavior.

Journal: Journal of neuroinflammation

Authors' code: majewska-lab (no license)

Status: code verified

[28811] doi:10.3389/fncom.2024.1391025 [paper, data]

Brain tumor segmentation using neuro-technology enabled intelligence-cascaded U-Net model.

Journal: Frontiers in computational neuroscience

Status: data only, 2 datasets cited

[28812] doi:10.3389/fneur.2024.1378076 [paper, data]

Combining data augmentation and deep learning for improved epilepsy detection.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[28813] doi:10.3389/fnmol.2024.1340958 [paper, data]

Nano-pulling stimulates axon regeneration in dorsal root ganglia by inducing stabilization of axonal microtubules and activation of local translation.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[28814] doi:10.3389/fnmol.2024.1361764 [paper, data]

Morphogenetic theory of mental and cognitive disorders: the role of neurotrophic and guidance molecules.

Journal: Frontiers in molecular neuroscience

Status: data only, 18 datasets cited

[28815] doi:10.3390/genes15040452 [paper, repository]

Early Chronic Fluoxetine Treatment of Ts65Dn Mice Rescues Synaptic Vesicular Deficits and Prevents Aberrant Proteomic Alterations.

Journal: Genes

Authors' code: hay/dataknead (MIT)

Status: code verified, 37 files readable

[28816] doi:10.3390/ijms25074008 [paper, data]

Claudin-10 Expression and the Gene Expression Pattern of Thick Ascending Limb Cells.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[28817] doi:10.3390/jintelligence12040042 [paper, data]

Stimulus Complexity Can Enhance Art Appreciation: Phenomenological and Psychophysiological Evidence for the Pleasure-Interest Model of Aesthetic Liking.

Journal: Journal of Intelligence

Status: data only, 1 dataset cited

[28818] doi:10.7554/elife.92839 [paper, repository]

Ocular dominance-dependent binocular combination of monocular neuronal responses in macaque V1.

Journal: eLife

Authors' code: supp:PMC10990486/elife-92839-code1.zip (no license)

Status: code verified, 1 file readable

[28819] doi:10.7717/peerj.17144 [paper, repository]

Tailoring transcranial alternating current stimulation based on endogenous event-related P3 to modulate premature responses: a feasibility study.

Journal: PeerJ

Authors' code: OSF 2dgwb (no license)

Status: code verified, 6 files readable, 3 matches

Tuesday, 2 April 2024 (27 papers)

[28820] doi:10.1016/j.celrep.2024.114027 [paper, repository]

Stereotyped goal-directed manifold dynamics in the insular cortex.

Journal: Cell reports

Authors' code: Fradenti/intRinsic (other), livnehlab/InsCtxManifolds (no license), Zenodo 10632243 (CC-BY-4.0)

Status: code verified, 65 files readable, 5 matches

[28821] doi:10.1016/j.dcn.2024.101370 [paper, repository]

A general exposome factor explains individual differences in functional brain network topography and cognition in youth.

Journal: Developmental cognitive neuroscience

Authors' code: OSF 2dm9q (no license), PennLINC/exposome_PFNs_cognition (no license)

Status: code verified, 77 files readable, 14 matches

[28822] doi:10.1016/j.neuroimage.2024.120600 [paper, repository]

Computational limits to the legibility of the imaged human brain.

Journal: NeuroImage

Authors' code: high-dimensional/stroop (Apache-2.0)

Status: code verified, 6 files readable, 2 matches

[28823] doi:10.1016/j.xpro.2024.102989 [paper, repository]

Unbiased quantification of the spatial distribution of murine cells using point pattern analysis.

Journal: STAR protocols

Authors' code: Zenodo 10805534 (CC-BY-4.0), elalilab/starprotocol_ppa (GPL-3.0)

Status: code verified, 8 files readable, 12 matches

[28824] doi:10.1038/s41431-024-01600-3 [paper, data]

De novo variants in GABRA4 are associated with a neurological phenotype including developmental delay, behavioral abnormalities and epilepsy.

Journal: European journal of human genetics : EJHG

Status: data only, 2 datasets cited

[28825] doi:10.1038/s41467-024-46277-w [paper, data]

Exome-wide analysis implicates rare protein-altering variants in human handedness.

Journal: Nature communications

Status: data only, 1 dataset cited

[28826] doi:10.1038/s41467-024-47152-4 [paper, repository]

Pianno: a probabilistic framework automating semantic annotation for spatial transcriptomics.

Journal: Nature communications

Authors' code: yuqiuzhou/Pianno (MIT), Zenodo 10760845 (CC-BY-4.0)

Status: code verified, 5 files readable

[28827] doi:10.1038/s41467-024-47278-5 [paper, repository]

Dynamic encoding of temperature in the central circadian circuit coordinates physiological activities.

Journal: Nature communications

Authors' code: lihailiang7794 (no license), Zenodo 10795750 (CC-BY-4.0), lihailiang7794/metal-flyplate (no license)

Status: code verified, 4 files readable

[28828] doi:10.1038/s41593-024-01594-7 [paper, data]

Climbing fibers provide essential instructive signals for associative learning.

Journal: Nature neuroscience

Status: code on request, 2 datasets cited

[28829] doi:10.1038/s41598-024-57511-2 [paper, repository]

Chronic phase advances reduces recognition memory and increases vascular cognitive dementia-like impairments in aged mice.

Journal: Scientific reports

Authors' code: jacobbumgarner.github.io/vesselvio (no license)

Status: code verified

[28830] doi:10.1038/s41598-024-58121-8 [paper, repository]

Neuron-level explainable AI for Alzheimer's Disease assessment from fundus images.

Journal: Scientific reports

Authors' code: NSH2022/LAVA (no license)

Status: code verified, 6 files readable, 11 matches

[28831] doi:10.1038/s42003-024-06104-w [paper, data]

q-Diffusion leverages the full dimensionality of gene coexpression in single-cell transcriptomics.

Journal: Communications biology

Status: data only, 2 datasets cited

[28832] doi:10.1073/pnas.2310291121 [paper, data]

Eye blinks as a visual processing stage.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[28833] doi:10.1080/15592294.2024.2333660 [paper, repository]

Critical evaluation of the reliability of DNA methylation probes on the Illumina MethylationEPIC v1.0 BeadChip microarrays.

Journal: Epigenetics

Authors' code: TransBioInfoLab/DNAm-reliability (no license)

Status: code verified, 11 files readable, 4 matches

[28834] doi:10.1093/beheco/arae026 [paper, repository]

Social complexity affects cognitive abilities but not brain structure in a Poeciliid fish.

Journal: Behavioral ecology : official journal of the International Society for Behavioral Ecology

Authors' code: doi:10.5061/dryad.hx3ffbgn5 (no license), Zenodo 10800076 (CC-BY-4.0)

Status: code verified, 1 file readable, 1 match

[28835] doi:10.1159/000538467 [paper]

IGFBP5 Promotes Neuronal Apoptosis in a 6-OHDA-Toxicant Model of Parkinson's Disease by Inhibiting the Sonic Hedgehog Signaling Pathway.

Journal: Medical principles and practice : international journal of the Kuwait University, Health Science Centre

Status: data only

[28836] doi:10.1162/imag_a_00121 [paper, repository]

Geometric deep learning for diffusion MRI signal reconstruction with continuous samplings (DISCUS).

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Deep-MI/DISCUS (no license)

Status: code verified, 6 files readable, 2 matches

[28837] doi:10.1186/s12915-024-01867-4 [paper, repository]

Insights for disease modeling from single-cell transcriptomics of iPSC-derived Ngn2-induced neurons and astrocytes across differentiation time and co-culture.

Journal: BMC biology

Authors' code: bioconductor.org/packages/devel (no license)

Status: code verified

[28838] doi:10.1186/s13073-024-01321-8 [paper, repository]

Glioblastoma-instructed microglia transition to heterogeneous phenotypic states with phagocytic and dendritic cell-like features in patient tumors and patient-derived orthotopic xenografts.

Journal: Genome medicine

Authors' code: yahayayabo/GBM_TME (no license)

Status: code verified, 19 files readable, 26 matches

[28839] doi:10.1212/nxi.0000000000200213 [paper, repository]

Single-Cell Multi-Omics Map of Cell Type-Specific Mechanistic Drivers of Multiple Sclerosis Lesions.

Journal: Neurology(R) neuroimmunology & neuroinflammation

Authors' code: AnneHartebrodt/ms-omics (GPL-3.0)

Status: code verified, 23 files readable, 7 matches

[28840] doi:10.1371/journal.pone.0297995 [paper, data]

Event-related theta and gamma band oscillatory dynamics during visuo-spatial sequence memory in younger and older adults.

Journal: PloS one

Status: data only, 1 dataset cited

[28841] doi:10.1371/journal.pone.0301514 [paper, data]

Perceptual formant discrimination during speech movement planning.

Journal: PloS one

Status: data only, 1 dataset cited

[28842] doi:10.1523/eneuro.0312-23.2024 [paper, repository]

Alpha and Beta Oscillations Differentially Support Word Production in a Rule-Switching Task.

Journal: eNeuro

Authors' code: data.donders.ru.nl (no license)

Status: code verified

[28843] doi:10.3389/fpsyt.2024.1358018 [paper, data]

One size does not fit all: notable individual variation in brain activity correlates of antidepressant treatment response.

Journal: Frontiers in psychiatry

Status: data only, 2 datasets cited

[28844] doi:10.3390/ani14071081 [paper, data]

How Is the Nociceptive Withdrawal Reflex Influenced by Increasing Doses of Propofol in Pigs?

Journal: Animals : an open access journal from MDPI

Status: data only, 1 dataset cited

[28845] doi:10.3390/bioengineering11040347 [paper, data]

Attention-ProNet: A Prototype Network with Hybrid Attention Mechanisms Applied to Zero Calibration in Rapid Serial Visual Presentation-Based Brain-Computer Interface.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[28846] doi:10.7554/elife.91135 [paper, repository]

Prior probability cues bias sensory encoding with increasing task exposure.

Journal: eLife

Authors' code: OSF b92wm (no license)

Status: code verified, 1 file readable

Monday, 1 April 2024 (87 papers, 50 on this page)

[28847] doi:10.1002/alz.13776 [paper, repository]

Structural white matter properties and cognitive resilience to tau pathology.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: villeneuvelab/vlpp (MIT), scilus/tractoflow-ABS (no license), scilus/connectoflow (MIT), thomasyeolab/cbig (MIT), scilus/scilpy (MIT), scilus/freewater_flow (MIT)

Status: code verified, 2,643 files readable, 7 matches

[28848] doi:10.1002/ctm2.1650 [paper, data]

ATF3 is a neuron-specific biomarker for spinal cord injury and ischaemic stroke.

Journal: Clinical and translational medicine

Status: data only, 1 dataset cited

[28849] doi:10.1002/dad2.12595 [paper, data]

A machine learning approach for potential Super-Agers identification using neuronal functional connectivity networks.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Status: data only, 1 dataset cited

[28850] doi:10.1002/dad2.12597 [paper, repository]

Detecting time-varying genetic effects in Alzheimer's disease using a longitudinal genome-wide association studies model.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: ZWang-Lab/RVMMAT (no license)

Status: code verified, 6 files readable, 1 match

[28851] doi:10.1002/hbm.26573 [paper, repository]

Using unsupervised capsule neural network reveal spatial representations in the human brain.

Journal: Human brain mapping

Authors' code: wanggongshu/U-CapsNet (no license), book-book24/U-CapsNet (no license)

Status: code verified, 4 files readable

[28852] doi:10.1002/hbm.26580 [paper, data]

A practical evaluation of measures derived from compressed sensing diffusion spectrum imaging.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[28853] doi:10.1002/hbm.26584 [paper, repository]

Atypical co-development of the thalamus and cortex in autism: Evidence from age-related white-gray contrast change.

Journal: Human brain mapping

Authors' code: aces/CIVET_Full_Project (BSD-3-Clause), sites.wustl.edu/petersenschlaggarlab/gordon2016surface_parcellation_distribute-20agwt4 (no license), vfonov/nist_mni_pipelines (no license)

Status: code verified, 232 files readable, 2 matches

[28854] doi:10.1002/hbm.26589 [paper, repository]

Gray matter volume associations in youth with ADHD features of inattention and hyperactivity/impulsivity.

Journal: Human brain mapping

Authors' code: VU-BRAINS-lab/Reimann_ADHD_Volume (no license)

Status: empty repository

[28855] doi:10.1002/hbm.26635 [paper, data]

The superior frontal sulcus in the human brain: Morphology and probability maps.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[28856] doi:10.1002/hbm.26638 [paper, repository]

Connectome spectrum electromagnetic tomography: A method to reconstruct electrical brain source networks at high-spatial resolution.

Journal: Human brain mapping

Authors' code: Zenodo 4486431 (CC-BY-4.0), matthieumeo/pyxu (MIT)

Status: code verified, 13 files readable

[28857] doi:10.1002/hbm.26649 [paper, repository]

Thalamic contributions to psychosis susceptibility: Evidence from co-activation patterns accounting for intra-seed spatial variability (μCAPs).

Journal: Human brain mapping

Authors' code: MIPLabCH/mCAP (Apache-2.0)

Status: code verified, 12 files readable

[28858] doi:10.1002/hbm.26650 [paper, repository]

Modeling the neurocognitive dynamics of language across the lifespan.

Journal: Human brain mapping

Authors' code: LPNC-LANG/SENECA (no license)

Status: code verified, 22 files readable, 16 matches

[28859] doi:10.1002/hbm.26657 [paper, data]

Molecular basis underlying default mode network functional abnormalities in postpartum depression with and without anxiety.

Journal: Human brain mapping

Status: code on request, 1 dataset cited

[28860] doi:10.1002/hbm.26663 [paper, data]

Higher-order functional connectivity analysis of resting-state functional magnetic resonance imaging data using multivariate cumulants.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[28861] doi:10.1002/hbm.26668 [paper, repository]

A framework for quantifying the coupling between brain connectivity and heartbeat dynamics: Insights into the disrupted network physiology in Parkinson's disease.

Journal: Human brain mapping

Authors' code: minepy (no license), diegocandiar/robust_hrv (no license), diegocandiar/heart_brain_conn (no license), diegocandiar/eeg_cluster_wilcoxon (no license)

Status: code verified, 18 files readable

[28862] doi:10.1002/hbm.26669 [paper, repository]

Community detection in the human connectome: Method types, differences and their impact on inference.

Journal: Human brain mapping

Authors' code: cstamoulis1/Next-Generation-Neural-Data-Analysis-NGNDA (no license), victoria-oceanna/SBM-brain-clustering (no license), SBUhaotian/BrainRicciFlow (no license)

Status: code verified, 8 files readable, 1 match

[28863] doi:10.1002/hbm.26674 [paper, repository]

Comprehensive analysis of synthetic learning applied to neonatal brain MRI segmentation.

Journal: Human brain mapping

Authors' code: romainvala/torchqc (no license)

Status: code verified, 103 files readable, 12 matches

[28864] doi:10.1002/hbm.26675 [paper, repository]

Whole brain pattern of iron accumulation in REM sleep behavior disorder.

Journal: Human brain mapping

Authors' code: acostaj/QSMbox (BSD-3-Clause)

Status: code verified, 184 files readable, 2 matches

[28865] doi:10.1002/hbm.26678 [paper, repository]

Functional gradients reveal cortical hierarchy changes in multiple sclerosis.

Journal: Human brain mapping

Authors' code: apderosa/GradientsMS (no license)

Status: code verified, 5 files readable, 2 matches

[28866] doi:10.1002/hbm.26683 [paper, repository]

Sex classification from functional brain connectivity: Generalization to multiple datasets.

Journal: Human brain mapping

Authors' code: jugit.fz-juelich.de/l.wiersch/functional_sex_classification_code (no license), jugit.fz-juelich.de/f.hoffstaedter/bids_pipelines (no license)

Status: code verified

[28867] doi:10.1002/hbm.26685 [paper, data]

Dissecting unique and common variance across body and brain health indicators using age prediction.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[28868] doi:10.1002/hbm.26686 [paper]

Whole-brain deuterium metabolic imaging via concentric ring trajectory readout enables assessment of regional variations in neuronal glucose metabolism.

Journal: Human brain mapping

Status: code on request

[28869] doi:10.1002/mgg3.2424 [paper, data]

A novel variant in ASNS gene responsible for syndromic intellectual disability and microcephaly: Case report and literature review.

Journal: Molecular genetics & genomic medicine

Status: data only, 10 datasets cited

[28870] doi:10.1007/s00401-024-02704-2 [paper, data]

Landscape of brain myeloid cell transcriptome along the spatiotemporal progression of Alzheimer's disease reveals distinct sequential responses to Aβ and tau.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[28871] doi:10.1016/j.celrep.2024.114025 [paper, data]

BAI1 localizes AMPA receptors at the cochlear afferent post-synaptic density and is essential for hearing.

Journal: Cell reports

Status: code on request, 1 dataset cited

[28872] doi:10.1016/j.isci.2024.109634 [paper, repository]

Tet controls axon guidance in early brain development through glutamatergic signaling.

Journal: iScience

Authors' code: Zenodo 10864320 (CC-BY-4.0), hhiept/tetxglu (no license)

Status: code verified, 12 files readable, 1 match

[28873] doi:10.1016/j.isci.2024.109652 [paper]

Encoding and context-dependent control of reward consumption within the central nucleus of the amygdala.

Journal: iScience

Status: code on request

[28874] doi:10.1016/j.mex.2024.102689 [paper, repository]

Normal and equivolumetric coordinate systems for cortical areas.

Journal: MethodsX

Authors' code: laurent_younes/py-lddmm (no license)

Status: dead link

[28875] doi:10.1016/j.ymthe.2024.03.036 [paper]

An innate immune response to adeno-associated virus genomes decreases cortical dendritic complexity and disrupts synaptic transmission.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: code on request

[28876] doi:10.1038/s41467-024-47028-7 [paper, repository]

Native-state proteomics of Parvalbumin interneurons identifies unique molecular signatures and vulnerabilities to early Alzheimer's pathology.

Journal: Nature communications

Authors' code: edammer/MAGMA.SPA (MIT)

Status: code verified, 3 files readable, 1 match

[28877] doi:10.1038/s41467-024-47107-9 [paper]

Loss-of-function mutation in PRMT9 causes abnormal synapse development by dysregulation of RNA alternative splicing.

Journal: Nature communications

Status: data only

[28878] doi:10.1038/s41467-024-47228-1 [paper]

Memristive tonotopic mapping with volatile resistive switching memory devices.

Journal: Nature communications

Status: code on request

[28879] doi:10.1038/s41586-024-07323-1 [paper, repository]

Complexity of avian evolution revealed by family-level genomes.

Journal: Nature

Authors' code: Secretloong/Cactus_Alignments_Tools (no license), doi:10.5061/dryad.fbg79cnw7 (no license), uym2/treeshrink (GPL-3.0)

Status: code verified, 172 files readable

[28880] doi:10.1038/s41598-024-58452-6 [paper, data]

Clinical phenotype and genetic function analysis of a family with hypomyelinating leukodystrophy-7 caused by POLR3A mutation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28881] doi:10.1073/pnas.2315167121 [paper, repository]

Space wandering in the rodent default mode network.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: tae-nghiem/DMN-space-wandering (no license)

Status: code verified, 3 files readable, 2 matches

[28882] doi:10.1093/brain/awad356 [paper]

Uncovering the distinct macro-scale anatomy of dysexecutive and behavioural degenerative diseases.

Journal: Brain : a journal of neurology

Status: code on request

[28883] doi:10.1093/brain/awad380 [paper, data]

Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive and complex movement disorders.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[28884] doi:10.1093/brain/awae025 [paper, repository]

Impaired value-based decision-making in Parkinson's disease apathy.

Journal: Brain : a journal of neurology

Authors' code: OSF h3e5s (no license)

Status: code verified, 11 files readable

[28885] doi:10.1093/cercor/bhae125 [paper, repository]

Neural alignment during outgroup intervention predicts future change of affect towards outgroup.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: version.aalto.fi/gitlab/klugea1 (no license)

Status: code verified

[28886] doi:10.1093/cercor/bhae135 [paper, data]

A special role for anterior cingulate cortex, but not orbitofrontal cortex or basolateral amygdala, in choices involving information.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[28887] doi:10.1093/cercor/bhae155 [paper, repository]

Linguistic modulation of the neural encoding of phonemes.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF zgj3m (no license)

Status: code verified, 1,437 files readable, 19 matches

[28888] doi:10.1093/ijnp/pyae019 [paper, data]

Placebo Effects Are Small on Average in the 7.5% CO2 Inhalational Model of Generalized Anxiety.

Journal: The international journal of neuropsychopharmacology

Status: data only, 1 dataset cited

[28889] doi:10.1093/nar/gkad1259 [paper, data]

A super minigene with a short promoter and truncated introns recapitulates essential features of transcription and splicing regulation of the SMN1 and SMN2 genes.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[28890] doi:10.1093/nar/gkae094 [paper, repository]

Influence of RNA circularity on Target RNA-Directed MicroRNA Degradation.

Journal: Nucleic acids research

Authors' code: figshare 24849105 (CC-BY-4.0)

Status: code verified

[28891] doi:10.1093/nar/gkae172 [paper, repository]

Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain.

Journal: Nucleic acids research

Authors' code: figshare 25288339 (CC-BY-4.0)

Status: code verified, 7 files readable, 6 matches

[28892] doi:10.1093/narmme/ugae007 [paper, data]

ATM-mediated co-chaperone DNAJB11 phosphorylation facilitates α-synuclein folding upon DNA double-stranded breaks.

Journal: NAR molecular medicine

Status: data only, 1 dataset cited

[28893] doi:10.1093/scan/nsae023 [paper, repository]

Can the neural representation of physical pain predict empathy for pain in others?

Journal: Social cognitive and affective neuroscience

Authors' code: canlab (no license), willstrawson/pain (no license)

Status: code verified, 5 files readable

[28894] doi:10.1093/schbul/sbae011 [paper, repository]

Accelerating Medicines Partnership® Schizophrenia (AMP® SCZ): Rationale and Study Design of the Largest Global Prospective Cohort Study of Clinical High Risk for Psychosis.

Journal: Schizophrenia bulletin

Authors' code: AMP-SCZ (no license)

Status: code verified

[28895] doi:10.1093/sleep/zsae012 [paper, repository]

Multimodal neuroimaging correlates of spectral power in NREM sleep delta sub-bands in cognitively unimpaired older adults.

Journal: Sleep

Authors' code: Frederik-D-Weber/sleeptrip (GPL-2.0)

Status: code verified, 2,000 files readable, 4 matches

[28896] doi:10.1111/cns.14708 [paper]

Automatic sleep-wake classification and Parkinson's disease recognition using multifeature fusion with support vector machine.

Journal: CNS neuroscience & therapeutics

Status: code on request

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