Every paper, by date: page 134

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 134 of 200: 26 February 2024 to 15 February 2024.

Monday, 26 February 2024 (29 papers, 22 on this page)

[29793] doi:10.1038/s41562-024-01831-w [paper, repository]

Dopamine and serotonin in human substantia nigra track social context and value signals during economic exchange.

Journal: Nature human behaviour

Authors' code: danbang/article-DA-5HT-UG-SNr (MIT)

Status: code verified, 12 files readable

[29794] doi:10.1038/s41598-024-51710-7 [paper, data]

Frequency-specific and periodic masking of peripheral characters by delayed foveal input.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29795] doi:10.1038/s41598-024-54660-2 [paper, data]

Temporal recalibration in response to delayed visual feedback of active versus passive actions: an fMRI study.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29796] doi:10.1073/pnas.2316306121 [paper, repository]

Live music stimulates the affective brain and emotionally entrains listeners in real time.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: caneuro.github.io/blog (no license)

Status: code verified

[29797] doi:10.1083/jcb.202309084 [paper, repository]

Dynein and dynactin move long-range but are delivered separately to the axon tip.

Journal: The Journal of cell biology

Authors' code: carterlablmb (no license)

Status: code verified

[29798] doi:10.1111/acel.14108 [paper, data]

Histone deficiency and hypoacetylation in the aging retinal pigment epithelium.

Journal: Aging cell

Status: data only, 1 dataset cited

[29799] doi:10.1371/journal.pcbi.1011108 [paper, repository]

Methods and considerations for estimating parameters in biophysically detailed neural models with simulation based inference.

Journal: PLoS computational biology

Authors' code: ntolley/hnn_sbi_examples (no license), OSF vz97x (no license)

Status: code verified, 34 files readable, 11 matches

[29800] doi:10.1371/journal.pcbi.1011887 [paper, repository]

Disentangled deep generative models reveal coding principles of the human face processing network.

Journal: PLoS computational biology

Authors' code: psoulos/disentangle-faces (no license)

Status: code verified, 42 files readable, 4 matches

[29801] doi:10.1523/eneuro.0120-23.2024 [paper, data]

Cone Synaptic function is modulated by the leucine rich repeat (LRR) adhesion molecule LRFN2.

Journal: eNeuro

Status: data only, 1 dataset cited

[29802] doi:10.1523/eneuro.0229-23.2023 [paper, repository]

A Modular Implementation to Handle and Benchmark Drift Correction for High-Density Extracellular Recordings.

Journal: eNeuro

Authors' code: samuelgarcia/spike_sorting_motion_benchmark_paper_2023 (MIT)

Status: code verified, 15 files readable, 11 matches

[29803] doi:10.3389/fendo.2024.1338458 [paper, data]

Incidence of microvascular dysfunction is increased in hyperlipidemic mice, reducing cerebral blood flow and impairing remote memory.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[29804] doi:10.3389/fimmu.2024.1356833 [paper, data]

TGIF2 is a potential biomarker for diagnosis and prognosis of glioma.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[29805] doi:10.3389/fimmu.2024.1359540 [paper, data]

Brain imaging derived phenotypes: a biomarker for the onset of inflammatory bowel disease and a potential mediator of mental complications.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[29806] doi:10.3389/fnagi.2024.1345417 [paper, repository]

Comparative analysis of multimodal biomarkers for amyloid-beta positivity detection in Alzheimer's disease cohorts.

Journal: Frontiers in aging neuroscience

Authors' code: Mostafa-Ghazi (no license)

Status: code verified

[29807] doi:10.3389/fnbeh.2024.1307825 [paper, repository]

Dissimilarities of neural representations of extinction trials are associated with extinction learning performance and renewal level.

Journal: Frontiers in behavioral neuroscience

Authors' code: rsagroup/rsatoolbox (MIT)

Status: code verified, 138 files readable

[29808] doi:10.3389/fnbeh.2024.1355807 [paper, repository]

Dorsal CA1 lesions of the hippocampus impact mating tactics in prairie voles by shifting non-monogamous males' use of space to resemble monogamous males.

Journal: Frontiers in behavioral neuroscience

Authors' code: cornell_bioinformatics/amplicon (MIT)

Status: code verified, 19 files readable

[29809] doi:10.3389/fnhum.2024.1347974 [paper, repository]

A method for synchronized use of EEG and eye tracking in fully immersive VR.

Journal: Frontiers in human neuroscience

Authors' code: gitlab.stud.idi.ntnu.no/group-92/eye-tracking-unity-lsl (no license)

Status: code found, still to be checked

[29810] doi:10.3389/fphar.2024.1321171 [paper, data]

On propagation in networks, promising models beyond network diffusion to describe degenerative brain diseases and traumatic brain injuries.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[29811] doi:10.3389/frai.2024.1330919 [paper, repository]

Benchmarking the influence of pre-training on explanation performance in MR image classification.

Journal: Frontiers in artificial intelligence

Authors' code: Marta54/Pretrain_XAI_gt (MIT)

Status: code verified, 9 files readable, 6 matches

[29812] doi:10.3390/s24051499 [paper, data]

Machine Learning-Assisted Speech Analysis for Early Detection of Parkinson's Disease: A Study on Speaker Diarization and Classification Techniques.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[29813] doi:10.3758/s13428-023-02331-x [paper, repository]

A tutorial on fitting joint models of M/EEG and behavior to understand cognition.

Journal: Behavior research methods

Authors' code: mdnunez/pyhddmjags (GPL-3.0), kiante-fernandez/Rhddmjags (GPL-3.0), JagsJulia/Jags.jl (MIT)

Status: code verified, 73 files readable, 14 matches

[29814] doi:10.7554/elife.89465 [paper, data]

Mechanical activation of TWIK-related potassium channel by nanoscopic movement and rapid second messenger signaling.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 25 February 2024 (2 papers)

[29815] doi:10.1038/s41598-024-55092-8 [paper, repository]

Radiomics for residual tumour detection and prognosis in newly diagnosed glioblastoma based on postoperative [¹¹C] methionine PET and T1c-w MRI.

Journal: Scientific reports

Authors' code: oncoray/cnn-petra (no license), alexzwanenburg/familiar (EUPL-1.2)

Status: code verified, 277 files readable, 13 matches

[29816] doi:10.1111/jfb.15696 [paper, repository]

Coercive mating has no impact on spatial learning, cognitive flexibility, and fecundity in female porthole livebearers (Poeciliopsis gracilis).

Journal: Journal of fish biology

Authors' code: figshare 23579178 (CC-BY-4.0)

Status: code verified

Saturday, 24 February 2024 (6 papers)

[29817] doi:10.1016/j.heliyon.2024.e27071 [paper, data]

Single-cell RNA sequencing reveals distinct transcriptomic profiles and evolutionary patterns in lung cancer brain metastasis.

Journal: Heliyon

Status: data only, 1 dataset cited

[29818] doi:10.1038/s41467-024-45880-1 [paper, repository]

Midbrain signaling of identity prediction errors depends on orbitofrontal cortex networks.

Journal: Nature communications

Authors' code: QingfangLiu/OFC_midbrain_TMS (MIT), Zenodo 10537266 (CC-BY-4.0)

Status: code verified, 40 files readable, 5 matches

[29819] doi:10.1038/s41467-024-45898-5 [paper, repository]

Induced neural phase precession through exogenous electric fields.

Journal: Nature communications

Authors' code: OpitzLab/NeMo-TMS (GPL-3.0), Aman-A/TMSsim_Aberra2019 (no license)

Status: code verified, 1,602 files readable, 8 matches

[29820] doi:10.1038/s41467-024-45970-0 [paper, repository]

Direct contribution of the sensory cortex to the judgment of stimulus duration.

Journal: Nature communications

Authors' code: arashfassihi/Direct-contribution-of-the-sensory-cortex-to-the-judgment-of-stimulus-duration (no license), Zenodo 10530061 (no license)

Status: code verified, 28 files readable

[29821] doi:10.1038/s41467-024-46021-4 [paper, repository]

T-DOpE probes reveal sensitivity of hippocampal oscillations to cannabinoids in behaving mice.

Journal: Nature communications

Authors' code: buzsakilab/buzcode (GPL-3.0)

Status: code verified, 2,000 files readable, 4 matches

[29822] doi:10.1038/s41598-024-54993-y [paper, repository]

Iterative pseudo balancing for stem cell microscopy image classification.

Journal: Scientific reports

Authors' code: adamwitmer/Iterative-Pseudo-Balancing (Apache-2.0), Zenodo 10672428 (CC-BY-4.0)

Status: code verified, 68 files readable, 12 matches

Friday, 23 February 2024 (35 papers)

[29823] doi:10.1002/acn3.52032 [paper, repository]

Predicting the impact of CPAP on brain health: A study using the sleep EEG-derived brain age index.

Journal: Annals of clinical and translational neurology

Authors' code: shyook83/EEG-BAI (Apache-2.0)

Status: code verified, 4 files readable

[29824] doi:10.1007/s00429-024-02760-0 [paper, data]

Generalising XTRACT tractography protocols across common macaque brain templates.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[29825] doi:10.1007/s10334-024-01153-y [paper, repository]

Impact of truncating diffusion MRI scans on diffusional kurtosis imaging.

Journal: Magma (New York, N.Y.)

Authors' code: diffusionmritool.github.io/demos (no license), LaSEEB/dMRI-subsampling_sims (no license)

Status: code verified, 2 files readable, 2 matches

[29826] doi:10.1016/j.cell.2024.01.041 [paper, repository]

Learning attentional templates for value-based decision-making.

Journal: Cell

Authors' code: Zenodo 10529801 (CC-BY-4.0)

Status: code verified

[29827] doi:10.1016/j.celrep.2024.113807 [paper, repository]

Working memory features are embedded in hippocampal place fields.

Journal: Cell reports

Authors' code: buzsakilab/buzcode (GPL-3.0), Zenodo 10277331 (CC-BY-4.0), petersenpeter/phy1-plugins (GPL-3.0)

Status: code verified, 2,017 files readable, 14 matches

[29828] doi:10.1016/j.crphys.2024.100121 [paper, repository]

A new method for isolation and purification of fusion-competent inhibitory synaptic vesicles.

Journal: Current research in physiology

Authors' code: brungerlab/single_molecule_matlab_scripts (GPL-3.0)

Status: code verified, 21 files readable

[29829] doi:10.1016/j.heliyon.2024.e26664 [paper, repository]

Automated extraction of heart rate variability from magnetoencephalography signals.

Journal: Heliyon

Authors' code: gitlab.rc.uab.edu/rcg2/hrv_meg (no license)

Status: code found, still to be checked

[29830] doi:10.1016/j.isci.2024.109296 [paper, repository]

<i>Mecp2</i> knock-out astrocytes affect synaptogenesis by interleukin 6 dependent mechanisms.

Journal: iScience

Authors' code: ebi.ac.uk/biostudies/arrayexpress (no license), vsbuffalo/scythe (MIT)

Status: code verified, 13 files readable

[29831] doi:10.1016/j.isci.2024.109319 [paper]

More reliable biomarkers and more accurate prediction for mental disorders using a label-noise filtering-based dimensional prediction method.

Journal: iScience

Status: code on request

[29832] doi:10.1016/j.jbc.2024.105785 [paper, repository]

The small molecule activator S3969 stimulates the epithelial sodium channel by interacting with a specific binding pocket in the channel's β-subunit.

Journal: The Journal of biological chemistry

Authors' code: f-sure/minimal-distance-MD (no license)

Status: code verified, 3 files readable, 1 match

[29833] doi:10.1016/j.neuropsychologia.2024.108839 [paper, data]

Role of corpus callosum in unconscious vision.

Journal: Neuropsychologia

Status: data only, 1 dataset cited

[29834] doi:10.1038/s41380-024-02419-6 [paper, repository]

(R)-ketamine restores anterior insular cortex activity and cognitive deficits in social isolation-reared mice.

Journal: Molecular psychiatry

Authors' code: Zenodo 10512326 (CC-BY-4.0)

Status: code verified, 1 file readable

[29835] doi:10.1038/s41398-024-02823-0 [paper]

Coexpression network analysis of the adult brain sheds light on the pathogenic mechanism of DDR1 in schizophrenia and bipolar disorder.

Journal: Translational psychiatry

Status: code on request

[29836] doi:10.1038/s41398-024-02836-9 [paper, data]

A multi-cohort study of the hippocampal radiomics model and its associated biological changes in Alzheimer's Disease.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[29837] doi:10.1038/s41467-024-45818-7 [paper]

Repeated blood-brain barrier opening with a nine-emitter implantable ultrasound device in combination with carboplatin in recurrent glioblastoma: a phase I/II clinical trial.

Journal: Nature communications

Status: code on request

[29838] doi:10.1038/s41467-024-45851-6 [paper, repository]

Quantitative live cell imaging of a tauopathy model enables the identification of a polypharmacological drug candidate that restores physiological microtubule interaction.

Journal: Nature communications

Authors' code: Department-of-Neurobiology (no license)

Status: code verified

[29839] doi:10.1038/s41467-024-46068-3 [paper, data]

Profiling of microglia nodules in multiple sclerosis reveals propensity for lesion formation.

Journal: Nature communications

Status: code on request, 1 dataset cited

[29840] doi:10.1038/s42003-024-05895-2 [paper, repository]

Cardio-audio synchronization elicits neural and cardiac surprise responses in human wakefulness and sleep.

Journal: Communications biology

Authors' code: ch.mathworks.com/matlabcentral/fileexchange (no license), DNC-EEG-platform/CardioAudio_Sleep (GPL-3.0)

Status: code verified, 7 files readable, 3 matches

[29841] doi:10.1038/s42003-024-05907-1 [paper, repository]

In-silico testing of new pharmacology for restoring inhibition and human cortical function in depression.

Journal: Communications biology

Authors' code: Zenodo 5771000 (CC-BY-4.0), agmccrei/HumanL23Circuit_a5PAM_AGM2023 (GPL-3.0), Zenodo 10497761 (CC-BY-4.0)

Status: code verified, 193 files readable, 9 matches

[29842] doi:10.1038/s43856-024-00452-8 [paper, repository]

Multi-scale V-net architecture with deep feature CRF layers for brain extraction.

Journal: Communications medicine

Authors' code: pjsjongsung/EVAC (no license), richford/hbn-pod2-qc (BSD-3-Clause), MiguelMonteiro/CRFasRNNLayer (MIT), Zenodo 10537125 (CC-BY-4.0)

Status: code verified, 106 files readable, 2 matches

[29843] doi:10.1080/10790268.2024.2317011 [paper, data]

Motor priming to enhance the effect of physical therapy in people with spinal cord injury.

Journal: The journal of spinal cord medicine

Status: data only, 1 dataset cited

[29844] doi:10.1093/braincomms/fcae064 [paper]

Impaired cognitive flexibility and disrupted cognitive cerebellum in degenerative cerebellar ataxias.

Journal: Brain communications

Status: code on request

[29845] doi:10.1126/sciadv.adk3198 [paper, repository]

Long-lasting forms of plasticity through patterned ultrasound-induced brainwave entrainment.

Journal: Science advances

Authors' code: cortex-lab/Kilosort (GPL-2.0)

Status: code verified, 67 files readable, 4 matches

[29846] doi:10.1159/000536126 [paper, data]

Tattoo Pigment Biokinetics in vivo in a 28-Day Porcine Model: Elements Undergo Fast Distribution to Lymph Nodes and Reach Steady State after 7 Days.

Journal: Dermatology (Basel, Switzerland)

Status: data only, 1 dataset cited

[29847] doi:10.1371/journal.pcbi.1011267 [paper, repository]

A biologically inspired repair mechanism for neuronal reconstructions with a focus on human dendrites.

Journal: PLoS computational biology

Authors' code: treestoolbox.org (no license)

Status: code verified

[29848] doi:10.1371/journal.pcbi.1011896 [paper, repository]

Shared input and recurrency in neural networks for metabolically efficient information transmission.

Journal: PLoS computational biology

Authors' code: Zenodo 10646689 (CC-BY-4.0), tom83b/optimal-coupling (no license)

Status: code verified, 42 files readable

[29849] doi:10.1371/journal.pone.0298448 [paper, data]

The behavioral sensitivity of mice to acyclic, monocyclic, and bicyclic monoterpenes.

Journal: PloS one

Status: data only, 1 dataset cited

[29850] doi:10.1371/journal.pone.0299083 [paper, data]

Brain-like illusion produced by Skye's Oblique Grating in deep neural networks.

Journal: PloS one

Status: data only, 2 datasets cited

[29851] doi:10.1523/eneuro.0020-24.2024 [paper, data]

Limited restoration of contrast sensitivity with training after V1 damage in humans.

Journal: eNeuro

Status: data only, 1 dataset cited

[29852] doi:10.2147/jir.s448959 [paper, data]

Sevoflurane Alters Serum Metabolites in Elders and Aging Mice and Increases Inflammation in Hippocampus.

Journal: Journal of inflammation research

Status: data only, 1 dataset cited

[29853] doi:10.3389/fncom.2024.1347748 [paper, repository]

Noise-induced synchrony of two-neuron motifs with asymmetric noise and uneven coupling.

Journal: Frontiers in computational neuroscience

Authors' code: TMUcode/CoupleNeurons (no license)

Status: code verified, 4 files readable

[29854] doi:10.3389/fneur.2024.1339223 [paper, repository]

Bridging the gap: improving correspondence between low-field and high-field magnetic resonance images in young people.

Journal: Frontiers in neurology

Authors' code: bchnerdlab/LF_3T_Frontiers (no license)

Status: code verified, 5 files readable, 7 matches

[29855] doi:10.3390/biomedicines12030506 [paper, data]

Comprehensive Transcriptomic Profiling of Diverse Brain Tumor Types Uncovers Complex Structures of the Brain Tumor Microenvironment.

Journal: Biomedicines

Status: data only, 1 dataset cited

[29856] doi:10.3390/cells13050383 [paper, data]

Downregulation of Ribosomal Protein Genes Is Revealed in a Model of Rat Hippocampal Neuronal Culture Activation with GABA(A)R/GlyRa2 Antagonist Picrotoxin.

Journal: Cells

Status: data only, 1 dataset cited

[29857] doi:10.7554/elife.85419 [paper, repository]

High-throughput mapping of single-neuron projection and molecular features by retrograde barcoded labeling.

Journal: eLife

Authors' code: MichaelPeibo/MERGE-seq-analysis (no license)

Status: code verified, 71 files readable, 22 matches

Thursday, 22 February 2024 (27 papers)

[29858] doi:10.1002/acn3.52028 [paper, data]

Loneliness as neurobehavioral issue in amyotrophic lateral sclerosis.

Journal: Annals of clinical and translational neurology

Status: data only, 1 dataset cited

[29859] doi:10.1002/advs.202309796 [paper, repository]

Spatiotemporal Insights into Glioma Oncostream Dynamics: Unraveling Formation, Stability, and Disassembly Pathways.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Zenodo 7587235 (other-open), faisalneurosurgery/analysis_glioma (GPL-2.0)

Status: code verified, 22 files readable, 4 matches

[29860] doi:10.1007/s00401-024-02694-1 [paper, data]

MET receptor serves as a promising target in melanoma brain metastases.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[29861] doi:10.1016/j.heliyon.2024.e26582 [paper, repository]

Exploring the influence of anthropomorphic appearance on usage intention on online medical service robots (OMSRs): A neurophysiological study.

Journal: Heliyon

Authors' code: pan.baidu.com/s/1lrr4vmckdksa-i098izb9a (no license)

Status: code verified

[29862] doi:10.1016/j.isci.2024.109304 [paper]

Long-lasting redundant <i>gnrh1/3</i> expression in GnRH neurons enabled apparent switching of paralog usage during evolution.

Journal: iScience

Status: code on request

[29863] doi:10.1016/j.isci.2024.109320 [paper]

Distinct GABAergic modulation of timing-dependent LTP in CA1 pyramidal neurons along the longitudinal axis of the mouse hippocampus.

Journal: iScience

Status: code on request

[29864] doi:10.1038/s41398-024-02818-x [paper, repository]

Neural sensitivity following stress predicts anhedonia symptoms: a 2-year multi-wave, longitudinal study.

Journal: Translational psychiatry

Authors' code: jackie-schwartz/neural_sensitivity_to_stress (no license)

Status: code verified, 13 files readable, 4 matches

[29865] doi:10.1038/s41467-024-45695-0 [paper, data]

Specification of neural circuit architecture shaped by context-dependent patterned LAR-RPTP microexons.

Journal: Nature communications

Status: data only, 2 datasets cited

[29866] doi:10.1038/s41467-024-45948-y [paper, data]

TREX tetramer disruption alters RNA processing necessary for corticogenesis in THOC6 Intellectual Disability Syndrome.

Journal: Nature communications

Status: data only, 1 dataset cited

[29867] doi:10.1038/s41559-024-02342-7 [paper, repository]

Problem-solving skills are predicted by technical innovations in the wild and brain size in passerines.

Journal: Nature ecology & evolution

Authors' code: Zenodo 10206756 (CC-BY-4.0)

Status: code verified, 1 file readable, 5 matches

[29868] doi:10.1038/s41593-024-01570-1 [paper, repository]

Mapping dysfunctional circuits in the frontal cortex using deep brain stimulation.

Journal: Nature neuroscience

Authors' code: netstim/DBS-Tractography-Atlas (no license), leaddbs/leaddbs (GPL-3.0)

Status: code verified, 2,000 files readable, 11 matches

[29869] doi:10.1038/s41593-024-01576-9 [paper, data]

Blood-brain barrier disruption and sustained systemic inflammation in individuals with long COVID-associated cognitive impairment.

Journal: Nature neuroscience

Status: code on request, 1 dataset cited

[29870] doi:10.1073/pnas.2312757121 [paper, data]

Variable expression of <i>MECP2, CDKL5,</i> and <i>FMR1</i> in the human brain: Implications for gene restorative therapies.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[29871] doi:10.1093/braincomms/fcae027 [paper, repository]

Integration of diffusion tensor imaging parameters with mesh morphing for in-depth analysis of brain white matter fibre tracts.

Journal: Brain communications

Authors' code: musculoskeletal/gias (no license)

Status: dead link

[29872] doi:10.1093/pnasnexus/pgae082 [paper, repository]

Characterization and closed-loop control of infrared thalamocortical stimulation produces spatially constrained single-unit responses.

Journal: PNAS nexus

Authors' code: bscoventry/OpticalTCNeuromodulation (MIT)

Status: code verified, 109 files readable, 5 matches

[29873] doi:10.1162/imag_a_00093 [paper, repository]

Representational similarity learning reveals a graded multidimensional semantic space in the human anterior temporal cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 7566607 (other-open), OSF axseq (no license), Zenodo 7566609 (other-open), crcox/rsl_correlation_analysis (no license), crcox/ecog-rsl-figures (no license)

Status: code verified, 131 files readable, 4 matches

[29874] doi:10.1162/imag_a_00095 [paper, repository]

Distinct neocortical mechanisms underlie human SI responses to median nerve and laser-evoked peripheral activation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: jonescompneurolab/hnn (other), jonescompneurolab/hnn-core (BSD-3-Clause), rythorpe/mnle_hnn (no license)

Status: code verified, 141 files readable, 14 matches

[29875] doi:10.1162/imag_a_00096 [paper, repository]

The impact of incidental anxiety on the neural signature of mentalizing.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 8cdv7 (no license)

Status: code verified, 2 files readable

[29876] doi:10.1162/imag_a_00097 [paper, data]

Electrical brain activity during human walking with parametric variations in terrain unevenness and walking speed.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[29877] doi:10.1371/journal.pone.0298787 [paper, repository]

Multi-modal analysis of inflammation as a potential mediator of depressive symptoms in young people with HIV: The GOLD depression study.

Journal: PloS one

Authors' code: arishmr/gold-depression-study (CC0-1.0)

Status: code verified, 24 files readable, 5 matches

[29878] doi:10.14336/ad.2024.0222 [paper, data]

MKK3 K329 Mutation Attenuates Diabetes-Associated Cognitive Dysfunction by Blocking the MKK3-RAGE Interaction and Inhibiting Neuroinflammation.

Journal: Aging and disease

Status: data only, 1 dataset cited

[29879] doi:10.3389/fnimg.2024.1339244 [paper, data]

New organizational principles and 3D cytoarchitectonic maps of the dorsolateral prefrontal cortex in the human brain.

Journal: Frontiers in neuroimaging

Status: data only, 6 datasets cited

[29880] doi:10.3390/brainsci14030201 [paper, repository]

Sex Differences in Conversion Risk from Mild Cognitive Impairment to Alzheimer's Disease: An Explainable Machine Learning Study with Random Survival Forests and SHAP.

Journal: Brain sciences

Authors' code: bacalfa/pysurvival (Apache-2.0)

Status: code verified, 69 files readable, 5 matches

[29881] doi:10.3758/s13414-024-02857-y [paper, repository]

Coregistration of EEG and eye-tracking in infants and developing populations.

Journal: Attention, perception & psychophysics

Authors' code: OSF 837wm (no license), OSF he2kr (no license)

Status: empty repository

[29882] doi:10.3758/s13415-024-01169-w [paper, data]

Neural and affective responses to prolonged eye contact with parents in depressed and nondepressed adolescents.

Journal: Cognitive, affective & behavioral neuroscience

Status: data only, 2 datasets cited

[29883] doi:10.7554/elife.85812 [paper, repository]

Towards biologically plausible phosphene simulation for the differentiable optimization of visual cortical prostheses.

Journal: eLife

Authors' code: neuralcodinglab/dynaphos (GPL-3.0), neuralcodinglab/dynaphos-experiments (GPL-3.0), neuralcodinglab/viseon (GPL-3.0)

Status: code verified, 44 files readable, 8 matches

[29884] doi:10.7554/elife.89287 [paper, data]

Touch receptor end-organ innervation and function require sensory neuron expression of the transcription factor Meis2.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 21 February 2024 (31 papers)

[29885] doi:10.1002/alz.13729 [paper, repository]

Presenilin-1 mutation position influences amyloidosis, small vessel disease, and dementia with disease stage.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: psmd-marker.com (no license)

Status: code verified

[29886] doi:10.1016/j.ajhg.2024.02.001 [paper, data]

De novo variants in DENND5B cause a neurodevelopmental disorder.

Journal: American journal of human genetics

Status: code on request, 2 datasets cited

[29887] doi:10.1016/j.celrep.2024.113830 [paper]

Parallel pathways carrying direction-and orientation-selective retinal signals to layer 4 of the mouse visual cortex.

Journal: Cell reports

Status: code on request

[29888] doi:10.1016/j.isci.2024.109289 [paper]

A novel GABAergic population in the medial vestibular nucleus maintains wakefulness and gates rapid eye movement sleep.

Journal: iScience

Status: code on request

[29889] doi:10.1038/s41419-024-06507-x [paper, data]

Modification of BCLX pre-mRNA splicing has antitumor efficacy alone or in combination with radiotherapy in human glioblastoma cells.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[29890] doi:10.1038/s41467-024-45107-3 [paper, repository]

Deep phenotyping of post-infectious myalgic encephalomyelitis/chronic fatigue syndrome.

Journal: Nature communications

Authors' code: johnmcculloch/JAMS_BW (GPL-3.0), timflutre/trimmomatic (no license), docwalitt/National-Institutes-of-Health-Myalgic-Encephalomyelitis-Chronic-Fatigue-Syndrome-Code-Repository (GPL-3.0), samtools/samtools (MIT), mhammell-laboratory/TEtranscripts (GPL-3.0), foocheung/ME-CFS_study_2020 (no license)

Status: code verified, 277 files readable, 10 matches

[29891] doi:10.1038/s41467-024-45576-6 [paper, repository]

Multi-molecular hyperspectral PRM-SRS microscopy.

Journal: Nature communications

Authors' code: lingyanshi2020/PRM-SRS (no license)

Status: code verified, 34 files readable, 4 matches

[29892] doi:10.1038/s41467-024-45821-y [paper, repository]

Integrating single-cell and spatially resolved transcriptomic strategies to survey the astrocyte response to stroke in male mice.

Journal: Nature communications

Authors' code: eyscott (no license), eyscott/Visium_10XChromium_tDISCO (no license), microfluidics.utoronto.ca/gitlab/disco (no license)

Status: code verified, 9 files readable, 5 matches

[29893] doi:10.1038/s41467-024-45971-z [paper, repository]

Heterogeneity of synaptic connectivity in the fly visual system.

Journal: Nature communications

Authors' code: silieslab/Cornean_Molina-Obando_etal_2024 (GPL-3.0), Zenodo 10468693 (CC-BY-4.0)

Status: code verified, 148 files readable, 6 matches

[29894] doi:10.1038/s41467-024-45989-3 [paper, repository]

Cortical astrocyte N-methyl-D-aspartate receptors influence whisker barrel activity and sensory discrimination in mice.

Journal: Nature communications

Authors' code: ein-lab/chips (GPL-3.0)

Status: code verified, 579 files readable, 3 matches

[29895] doi:10.1038/s41531-024-00656-8 [paper]

Coupling between beta band and high frequency oscillations as a clinically useful biomarker for DBS.

Journal: NPJ Parkinson's disease

Status: code on request

[29896] doi:10.1038/s41598-024-54680-y [paper, data]

Tuning attention based long-short term memory neural networks for Parkinson's disease detection using modified metaheuristics.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29897] doi:10.1038/s41746-024-01008-9 [paper, repository]

Towards trustworthy seizure onset detection using workflow notes.

Journal: NPJ digital medicine

Authors' code: khaledsaab/eeg_robustness (no license)

Status: code verified, 28 files readable, 4 matches

[29898] doi:10.1038/s42003-024-05862-x [paper, repository]

Higher handgrip strength is linked to higher salience ventral attention functional network segregation in older adults.

Journal: Communications biology

Authors' code: hzlab/2023_Chong_CommunBiol_Gripstrength_FC (no license), Zenodo 10500670 (CC-BY-4.0)

Status: code verified, 28 files readable, 8 matches

[29899] doi:10.1038/s42003-024-05869-4 [paper, repository]

On the stability of canonical correlation analysis and partial least squares with application to brain-behavior associations.

Journal: Communications biology

Authors' code: murraylab/gemmr (GPL-3.0), Zenodo 10253489 (CC-BY-4.0), OSF 8expj (no license)

Status: code verified, 128 files readable, 11 matches

[29900] doi:10.1073/pnas.2313073121 [paper, repository]

The social transmission of empathy relies on observational reinforcement learning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF n49y3 (no license)

Status: code verified, 9 files readable, 1 match

[29901] doi:10.1097/cm9.0000000000003032 [paper, data]

Electroacupuncture improves cognitive function in a rat model of mild traumatic brain injury by regulating the SIRT-1/PGC-1α/mitochondrial pathway.

Journal: Chinese medical journal

Status: data only, 1 dataset cited

[29902] doi:10.1098/rsob.230382 [paper, repository]

Inhibiting responses under the watch of a recently synchronized peer increases self-monitoring: evidence from functional near-infrared spectroscopy.

Journal: Open biology

Authors' code: OSF e7w4v (no license), doi:10.6084/m9.figshare.c.7065773 (no license)

Status: code verified

[29903] doi:10.1111/acel.14110 [paper, data]

Advanced age and female sex protect cerebral arteries from mitochondrial depolarization and apoptosis during acute oxidative stress.

Journal: Aging cell

Status: data only, 1 dataset cited

[29904] doi:10.1126/sciadv.adj2566 [paper, repository]

Disparate processing of numerosity and associated continuous magnitudes in rats.

Journal: Science advances

Authors' code: lizzymuch/github_Share (no license), Zenodo 8395298 (other-open)

Status: code verified, 8 files readable

[29905] doi:10.1126/sciadv.adj4399 [paper, repository]

Multivariate classification of multichannel long-term electrophysiology data identifies different sleep stages in fruit flies.

Journal: Science advances

Authors' code: Zenodo 10277442 (CC-BY-4.0), Zenodo 10277465 (CC-BY-4.0), sridharjagannathan/drossleepstages_datasettools_sciadvances2023 (MIT), sridharjagannathan/drossleepstages_sciadvances2023 (MIT)

Status: code verified, 104 files readable, 13 matches

[29906] doi:10.1186/s12883-024-03558-7 [paper, data]

Single-cell RNA sequencing of anaplastic ependymoma and H3K27M-mutant diffuse midline glioma.

Journal: BMC neurology

Status: data only, 1 dataset cited

[29907] doi:10.1186/s12974-024-03041-7 [paper, data]

Integration of National Health Insurance claims data and animal models reveals fexofenadine as a promising repurposed drug for Parkinson's disease.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[29908] doi:10.1371/journal.pone.0293894 [paper, data]

Tet-dependent 5-hydroxymethyl-Cytosine modification of mRNA regulates axon guidance genes in Drosophila.

Journal: PloS one

Status: data only, 1 dataset cited

[29909] doi:10.1371/journal.pone.0297435 [paper, data]

Audiovisualization of real-time neuroimaging data.

Journal: PloS one

Status: data only, 2 datasets cited

[29910] doi:10.3389/fnbeh.2024.1355879 [paper, repository]

The fear of spiders: perceptual features assessed in augmented reality.

Journal: Frontiers in behavioral neuroscience

Authors' code: M45K/RitualOfChud (no license), OSF 73s2q (no license)

Status: code verified, 1 file readable, 3 matches

[29911] doi:10.3389/fnhum.2024.1320806 [paper]

Proceedings of the 11th Annual Deep Brain Stimulation Think Tank: pushing the forefront of neuromodulation with functional network mapping, biomarkers for adaptive DBS, bioethical dilemmas, AI-guided neuromodulation, and translational advancements.

Journal: Frontiers in human neuroscience

Status: code on request

[29912] doi:10.3390/biom14030255 [paper, data]

Copines, a Family of Calcium Sensor Proteins and Their Role in Brain Function.

Journal: Biomolecules

Status: data only, 2 datasets cited

[29913] doi:10.3390/brainsci14030196 [paper, repository]

Adaptive LDA Classifier Enhances Real-Time Control of an EEG Brain-Computer Interface for Decoding Imagined Syllables.

Journal: Brain sciences

Authors' code: fcbg-hnp/NeuroDecode (LGPL-2.1)

Status: code verified, 138 files readable, 4 matches

[29914] doi:10.7554/elife.87029 [paper, repository]

Sexual coordination in a whole-brain map of prairie vole pair bonding.

Journal: eLife

Authors' code: figshare 21375666 (CC-BY-4.0)

Status: code verified, 7 files readable, 13 matches

[29915] doi:10.7717/peerj-cs.1877 [paper, repository]

Categorization of Alzheimer's disease stages using deep learning approaches with McNemar's test.

Journal: PeerJ. Computer science

Authors' code: Zenodo 10259112 (CC-BY-4.0)

Status: code verified

Tuesday, 20 February 2024 (38 papers)

[29916] doi:10.1002/alz.13703 [paper, repository]

Silencing Apoe with divalent-siRNAs improves amyloid burden and activates immune response pathways in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: shildebr12/Ferguson_et_al_2021 (no license)

Status: empty repository, 1 file readable

[29917] doi:10.1002/ece3.10977 [paper, data]

Thermoregulatory response in juvenile <i>Hippocampus erectus</i>: Effect of magnitude and rate of thermal increase on metabolism and antioxidative defence.

Journal: Ecology and evolution

Status: data only, 1 dataset cited

[29918] doi:10.1007/s00701-024-05973-8 [paper, repository]

NnU-Net versus mesh growing algorithm as a tool for the robust and timely segmentation of neurosurgical 3D images in contrast-enhanced T1 MRI scans.

Journal: Acta neurochirurgica

Authors' code: MathijsdeBoer/nnUNet-vs-MGA (Apache-2.0), MIC-DKFZ/nnUNet (Apache-2.0)

Status: code verified, 269 files readable, 2 matches

[29919] doi:10.1016/j.bpj.2024.02.013 [paper, repository]

Deep-LASI, single-molecule data analysis software.

Journal: Biophysical journal

Authors' code: simon71/deeplasi (no license)

Status: code verified, 831 files readable, 12 matches

[29920] doi:10.1016/j.dib.2024.110221 [paper, data]

Dataset for selection of stable reference genes for accurate quantitative gene expression analysis in silvertip tetra (<i>Hasemania nana</i>): Implications for sex differentiation and determination.

Journal: Data in brief

Status: data only, 1 dataset cited

[29921] doi:10.1016/j.heliyon.2024.e26409 [paper, repository]

Physiological records-based situation awareness evaluation under aviation context: A comparative analysis.

Journal: Heliyon

Authors' code: Amyyy-z/SA-Assessment (no license)

Status: code verified, 2 files readable, 1 match

[29922] doi:10.1016/j.isci.2024.109274 [paper, repository]

Adaptation of sequential action benefits from timing variability related to lateral basal ganglia circuitry.

Journal: iScience

Authors' code: figshare 21640835 (CC-BY-4.0)

Status: code verified

[29923] doi:10.1016/j.isci.2024.109281 [paper, repository]

The decreased astrocyte-microglia interaction reflects the early characteristics of Alzheimer's disease.

Journal: iScience

Authors' code: liukf10/5xFAD-PCx-proteomic-data-analysis (GPL-3.0)

Status: code verified, 6 files readable, 2 matches

[29924] doi:10.1016/j.isci.2024.109295 [paper, data]

The effects of aging and hearing impairment on listening in noise.

Journal: iScience

Status: data only, 1 dataset cited

[29925] doi:10.1016/j.reth.2024.02.002 [paper, data]

Bulk RNA sequencing reveals the comprehensive genetic characteristics of human cord blood-derived natural killer cells.

Journal: Regenerative therapy

Status: data only, 1 dataset cited

[29926] doi:10.1038/s41380-024-02475-y [paper, repository]

Right frontal cingulate cortex mediates the effect of prenatal complications on youth internalizing behaviors.

Journal: Molecular psychiatry

Authors' code: OSF yebtp (no license)

Status: code verified, 3 files readable

[29927] doi:10.1038/s41398-024-02816-z [paper]

Cortical signatures of sleep are altered following effective deep brain stimulation for depression.

Journal: Translational psychiatry

Status: code on request

[29928] doi:10.1038/s41467-024-45190-6 [paper, repository]

Biomimetic computer-to-brain communication enhancing naturalistic touch sensations via peripheral nerve stimulation.

Journal: Nature communications

Authors' code: NatalijaKatic/Biomimetic-project (no license)

Status: code verified, 15 files readable, 5 matches

[29929] doi:10.1038/s41467-024-45300-4 [paper, repository]

Functional plasticity of glutamatergic neurons of medullary reticular nuclei after spinal cord injury in mice.

Journal: Nature communications

Authors' code: Zenodo 8206041 (other-open), malem83/locotool_motorspikes (MIT)

Status: code verified, 34 files readable

[29930] doi:10.1038/s41467-024-45433-6 [paper, repository]

A neural signature for the subjective experience of threat anticipation under uncertainty.

Journal: Nature communications

Authors' code: canlab/CanlabCore (GPL-2.0), OSF a8gcb (no license), lucyliu666/Anxiety_decoder (no license), Zenodo 10409502 (CC-BY-4.0)

Status: code verified, 2,037 files readable, 12 matches

[29931] doi:10.1038/s41467-024-45741-x [paper, repository]

Unsupervised classification of brain-wide axons reveals the presubiculum neuronal projection blueprint.

Journal: Nature communications

Authors' code: Projectomics/MATLAB (no license), Projectomics (no license)

Status: code verified, 147 files readable, 10 matches

[29932] doi:10.1038/s41565-024-01609-1 [paper]

Mechanical stimulation and electrophysiological monitoring at subcellular resolution reveals differential mechanosensation of neurons within networks.

Journal: Nature nanotechnology

Status: code on request

[29933] doi:10.1038/s41598-024-54347-8 [paper, data]

Retinal dysfunction in Huntington's disease mouse models concurs with local gliosis and microglia activation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[29934] doi:10.1038/s41598-024-54416-y [paper, data]

Exploring new horizons in neuroscience disease detection through innovative visual signal analysis.

Journal: Scientific reports

Status: data only, 4 datasets cited

[29935] doi:10.1038/s41598-024-54643-3 [paper, repository]

Machine learning-based investigation of regulated cell death for predicting prognosis and immunotherapy response in glioma patients.

Journal: Scientific reports

Authors' code: TheJacksonLaboratory/singlecellglioma-verhaaklab (MIT), zwxiangya/RCD.GPscore (no license)

Status: code verified, 94 files readable, 1 match

[29936] doi:10.1038/s41598-024-54720-7 [paper, repository]

The gephyrin scaffold modulates cortical layer 2/3 pyramidal neuron responsiveness to single whisker stimulation.

Journal: Scientific reports

Authors' code: dcolam/Cluster-Analysis-Plugin (MIT)

Status: code verified, 20 files readable

[29937] doi:10.1038/s42003-024-05873-8 [paper, repository]

Longitudinal monitoring of the mouse brain reveals heterogenous network trajectories during aging.

Journal: Communications biology

Authors' code: doi:10.5061/dryad.jdfn2z3hr (no license)

Status: dead link

[29938] doi:10.1038/s42255-024-00987-z [paper, repository]

Reciprocal activity of AgRP and POMC neurons governs coordinated control of feeding and metabolism.

Journal: Nature metabolism

Authors' code: lsteuernagel/AgrpPomc_NTS (no license)

Status: code verified, 14 files readable, 3 matches

[29939] doi:10.1073/pnas.2310012121 [paper, repository]

Deep learning models reveal replicable, generalizable, and behaviorally relevant sex differences in human functional brain organization.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: scsnl/YZ_HCP_DNN_Gender_2023 (CC-BY-NC-4.0)

Status: code verified, 96 files readable, 10 matches

[29940] doi:10.1073/pnas.2311160121 [paper, data]

Dysregulated inter-mitochondrial crosstalk in glioblastoma cells revealed by in situ cryo-electron tomography.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 6 datasets cited

[29941] doi:10.1073/pnas.2313831121 [paper, data]

Evolutionary continuity and divergence of auditory dorsal and ventral pathways in primates revealed by ultra-high field diffusion MRI.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[29942] doi:10.1073/pnas.2315132121 [paper, repository]

cAMP binding to closed pacemaker ion channels is cooperative.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 2zcpv (no license)

Status: code verified, 68 files readable, 1 match

[29943] doi:10.1093/braincomms/fcae055 [paper, repository]

Staging of progressive supranuclear palsy-Richardson syndrome using MRI brain charts for the human lifespan.

Journal: Brain communications

Authors' code: volBrain/AssemblyNet (other)

Status: code verified, 2 files readable

[29944] doi:10.1172/jci.insight.174645 [paper, data]

Impaired T3 uptake and action in MCT8-deficient cerebral organoids underlie Allan-Herndon-Dudley syndrome.

Journal: JCI insight

Status: data only, 1 dataset cited

[29945] doi:10.1371/journal.pcbi.1010706 [paper, repository]

Robust and consistent measures of pattern separation based on information theory and demonstrated in the dentate gyrus.

Journal: PLoS computational biology

Authors' code: Zenodo 10233025 (CC-BY-4.0), synapsesanddendrites/Pattern_separation_toolbox (MIT)

Status: code verified, 36 files readable, 1 match

[29946] doi:10.1371/journal.pcbi.1011839 [paper, repository]

Fast adaptation to rule switching using neuronal surprise.

Journal: PLoS computational biology

Authors' code: martinbarry59/SpikeSuMNet (no license)

Status: code verified, 19 files readable, 5 matches

[29947] doi:10.1371/journal.pcbi.1011904 [paper, repository]

Connectivity Matrix Seriation via Relaxation.

Journal: PLoS computational biology

Authors' code: axelborst/Matrix_Reordering (no license)

Status: code verified, 9 files readable, 3 matches

[29948] doi:10.1371/journal.pgen.1010657 [paper, repository]

IntroUNET: Identifying introgressed alleles via semantic segmentation.

Journal: PLoS genetics

Authors' code: SchriderLab/introNets (GPL-3.0), kr-colab/filet (GPL-3.0)

Status: code verified, 176 files readable, 15 matches

[29949] doi:10.21203/rs.3.rs-3931057/v1 [paper, repository]

Neurocognitive Dynamics and Behavioral Differences of Symmetry and Asymmetry Processing in Working Memory: Insights from fNIRS

Journal: Research Square (preprint)

Authors' code: OSF z7kw3 (no license)

Status: code verified, 7 files readable

[29950] doi:10.2147/jir.s445382 [paper]

Predicting Diagnostic Biomarkers Associated with Pyroptosis in Neuropathic Pain Based on Machine Learning and Experimental Validation.

Journal: Journal of inflammation research

Status: data only

[29951] doi:10.3389/fpsyg.2024.1308971 [paper, repository]

Combining transcranial magnetic stimulation with training to improve social cognition impairment in schizophrenia: a pilot randomized controlled trial.

Journal: Frontiers in psychology

Authors' code: OSF d5aeb (no license)

Status: empty repository

[29952] doi:10.3758/s13423-024-02474-8 [paper, data]

The distinct development of stimulus and response serial dependence.

Journal: Psychonomic bulletin & review

Status: data only, 1 dataset cited

[29953] doi:10.7554/elife.89093 [paper, repository]

Reward contingency gates selective cholinergic suppression of amygdala neurons.

Journal: eLife

Authors' code: Tyelab/eLife_2023 (GPL-3.0)

Status: code verified, 29 files readable

Monday, 19 February 2024 (21 papers)

[29954] doi:10.1002/acm2.14310 [paper, repository]

Deep learning segmentation of organs-at-risk with integration into clinical workflow for pediatric brain radiotherapy.

Journal: Journal of applied clinical medical physics

Authors' code: JHU-MICA/JACMP2024_PedsBrainSeg (MIT)

Status: code verified, 10 files readable, 3 matches

[29955] doi:10.1016/j.cub.2024.01.067 [paper, repository]

Dopamine neuron activity encodes the length of upcoming contralateral movement sequences.

Journal: Current biology : CB

Authors' code: zhoupc/CNMF_E (GPL-3.0)

Status: code verified, 266 files readable, 2 matches

[29956] doi:10.1016/j.isci.2024.109206 [paper, repository]

Frequency-specific segregation and integration of human cerebral cortex: An intrinsic functional atlas.

Journal: iScience

Authors' code: sites.wustl.edu/petersenschlaggarlab (no license), luozhuxi/Frequency-parcellation (no license)

Status: empty repository

[29957] doi:10.1016/j.isci.2024.109266 [paper]

Basal forebrain and prelimbic cortex connectivity is related to behavioral response in an attention task.

Journal: iScience

Status: code on request

[29958] doi:10.1016/j.isci.2024.109268 [paper, repository]

Responses in the left and right entopallium are differently affected by light stimulation in embryo.

Journal: iScience

Authors' code: Zenodo 10651130 (CC-BY-4.0)

Status: code verified, 2 files readable

[29959] doi:10.1016/j.neuron.2024.01.028 [paper]

Cell-type-specific expression of tRNAs in the brain regulates cellular homeostasis.

Journal: Neuron

Status: code on request

[29960] doi:10.1038/s41467-024-45746-6 [paper, data]

Regulation of stress granule formation in human oligodendrocytes.

Journal: Nature communications

Status: data only, 2 datasets cited

[29961] doi:10.1038/s41467-024-45922-8 [paper, repository]

A neurophysiological basis for aperiodic EEG and the background spectral trend.

Journal: Nature communications

Authors' code: figshare 24777990 (CC-BY-4.0), niklasbrake/EEG_modelling (CC-BY-4.0), Zenodo 10359818 (CC-BY-4.0), Zenodo 10359817 (CC-BY-4.0)

Status: code verified, 360 files readable, 17 matches

[29962] doi:10.1038/s41531-024-00653-x [paper]

Synaptic dysfunction and extracellular matrix dysregulation in dopaminergic neurons from sporadic and E326K-GBA1 Parkinson's disease patients.

Journal: NPJ Parkinson's disease

Status: code on request

[29963] doi:10.1038/s44321-023-00020-y [paper, data]

Lowering mutant huntingtin by small molecules relieves Huntington's disease symptoms and progression.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[29964] doi:10.1098/rstb.2022.0378 [paper, repository]

Cell type-specific functions of Alzheimer's disease endocytic risk genes.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7007769 (no license)

Status: code found, still to be checked

[29965] doi:10.1111/acel.14109 [paper, data]

Spatially resolved transcriptome of the aging mouse brain.

Journal: Aging cell

Status: data only, 1 dataset cited

[29966] doi:10.1111/bpa.13247 [paper, repository]

Ranking and filtering of neuropathology features in the machine learning evaluation of dementia studies.

Journal: Brain pathology (Zurich, Switzerland)

Authors' code: mdrajab/CFAS-and-ADNI-Neuropathology (MIT)

Status: code verified, 6 files readable, 12 matches

[29967] doi:10.1136/gpsych-2023-101374 [paper, data]

Gut microbiota-derived short-chain fatty acids and depression: deep insight into biological mechanisms and potential applications.

Journal: General psychiatry

Status: data only, 1 dataset cited

[29968] doi:10.3389/fnbot.2024.1336438 [paper, repository]

Metastability indexes global changes in the dynamic working point of the brain following brain stimulation.

Journal: Frontiers in neurorobotics

Authors' code: cbdl/metastabilitytms (no license)

Status: code verified, 9 files readable, 4 matches

[29969] doi:10.3389/fnhum.2024.1324710 [paper, repository]

DiMANI: diffusion MRI for anatomical nuclei imaging-Application for the direct visualization of thalamic subnuclei.

Journal: Frontiers in human neuroscience

Authors' code: thalamicseg/thomas_new (no license)

Status: code verified, 13 files readable

[29970] doi:10.3389/fnins.2024.1288274 [paper, data]

A robust approach for multi-type classification of brain tumor using deep feature fusion.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[29971] doi:10.3389/fphys.2024.1354530 [paper, data]

Identification of candidate chemosensory genes in <i>Bactrocera cucurbitae</i> based on antennal transcriptome analysis.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[29972] doi:10.3389/fpsyt.2024.1337740 [paper, repository]

Leveraging big data for causal understanding in mental health: a research framework.

Journal: Frontiers in psychiatry

Authors' code: OSF p9ur6 (no license)

Status: code verified

[29973] doi:10.3389/frai.2023.1286266 [paper, data]

Neuroimaging data repositories and AI-driven healthcare-Global aspirations vs. ethical considerations in machine learning models of neurological disease.

Journal: Frontiers in artificial intelligence

Status: data only, 1 dataset cited

[29974] doi:10.7554/elife.89754 [paper, data]

Genetic screen identified PRMT5 as a neuroprotection target against cerebral ischemia.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 18 February 2024 (1 paper)

[29975] doi:10.1002/alz.13695 [paper, repository]

Three-dimensional histology reveals dissociable human hippocampal long-axis gradients of Alzheimer's pathology.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: ortegacruzd/Path2MR (no license)

Status: code verified, 371 files readable, 5 matches

Saturday, 17 February 2024 (10 papers)

[29976] doi:10.1007/s10072-024-07364-4 [paper, repository]

Neurophysiological signatures of mild traumatic brain injury in the acute and subacute phase.

Journal: Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology

Authors' code: Valeebarons/Analyses_eyemovements_absences (no license), Valeebarons/Visual (no license)

Status: code verified, 10 files readable, 5 matches

[29977] doi:10.1016/j.heliyon.2024.e26393 [paper]

Disrupted nuclear import of cell cycle proteins in Huntington's/PolyQ disease causes neurodevelopment defects in cellular and Drosophila model.

Journal: Heliyon

Status: code on request

[29978] doi:10.1016/j.isci.2024.109264 [paper, repository]

Location of the axon initial segment assembly can be predicted from neuronal shape.

Journal: iScience

Authors' code: ZhuangGitRepo/Neuron_AIS_Analysis (GPL-3.0)

Status: code verified, 13 files readable, 7 matches

[29979] doi:10.1016/j.nicl.2024.103577 [paper, repository]

Increased iron in the substantia nigra pars compacta identifies patients with early Parkinson'sdisease: A 3T and 7T MRI study.

Journal: NeuroImage. Clinical

Authors' code: AlanKuurstra/qsm_sstv (no license)

Status: code verified, 4 files readable

[29980] doi:10.1038/s41467-024-45853-4 [paper, repository]

A consistent map in the medial entorhinal cortex supports spatial memory.

Journal: Nature communications

Authors' code: GuLab-NIH/MaloneNatComm2024 (Apache-2.0)

Status: code verified, 123 files readable, 6 matches

[29981] doi:10.1038/s41531-024-00650-0 [paper]

Angiotensin type 1 receptor activation promotes neuronal and glial alpha-synuclein aggregation and transmission.

Journal: NPJ Parkinson's disease

Status: code on request

[29982] doi:10.1038/s41537-024-00443-7 [paper, repository]

Temporal changes of gene expression in health, schizophrenia, bipolar disorder, and major depressive disorder.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: susieavagyan/BrainExp-TemporalDynamics (no license)

Status: code verified, 76 files readable, 9 matches

[29983] doi:10.1038/s42003-024-05787-5 [paper, repository]

Distinct spatiotemporal patterns of cortical thinning in Alzheimer's disease-type cognitive impairment and subcortical vascular cognitive impairment.

Journal: Communications biology

Authors' code: ucl-pond/pySuStaIn (MIT), nitrc.org/projects/bnv (no license)

Status: code verified, 19 files readable, 2 matches

[29984] doi:10.1038/s42003-024-05877-4 [paper, repository]

Common mitochondrial deletions in RNA-Seq: evaluation of bulk, single-cell, and spatial transcriptomic datasets.

Journal: Communications biology

Authors' code: aomidsalar/RNA-Seq_Splice-Break2 (MIT), LieberInstitute/HumanPilot (Artistic-2.0), support.10xgenomics.com/spatial-gene-expression/software (no license), Zenodo 10499375 (CC-BY-4.0), Zenodo 10499097 (CC-BY-4.0)

Status: code verified, 110 files readable, 7 matches

[29985] doi:10.3390/ijms25042361 [paper, data]

A Survey on the Expression of the Ubiquitin Proteasome System Components HECT- and RBR-E3 Ubiquitin Ligases and E2 Ubiquitin-Conjugating and E1 Ubiquitin-Activating Enzymes during Human Brain Development.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 16 February 2024 (27 papers)

[29986] doi:10.1007/s11060-024-04563-z [paper, repository]

The development of a custom RNA-sequencing panel for the identification of predictive and diagnostic biomarkers in glioma.

Journal: Journal of neuro-oncology

Authors' code: STAR-Fusion (no license)

Status: code verified

[29987] doi:10.1016/j.isci.2024.109250 [paper]

Gradient phase and amplitude errors in atomic magnetic gradiometers for biomagnetic imaging systems.

Journal: iScience

Status: code on request

[29988] doi:10.1016/j.isci.2024.109258 [paper, data]

Single-cell RNA sequencing reveals epithelial cells driving brain metastasis in lung adenocarcinoma.

Journal: iScience

Status: code on request, 1 dataset cited

[29989] doi:10.1016/j.neurot.2024.e00334 [paper, data]

Neurophysiological treatment effects of mesdopetam, pimavanserin and clozapine in a rodent model of Parkinson's disease psychosis.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[29990] doi:10.1016/s2352-4642(23)00340-1 [paper, repository]

Effect of parental touch on relieving acute procedural pain in neonates and parental anxiety (Petal): a multicentre, randomised controlled trial in the UK.

Journal: The Lancet. Child & adolescent health

Authors' code: Zenodo 8429864 (CC-BY-4.0)

Status: code verified, 2 files readable, 1 match

[29991] doi:10.1021/acsomega.3c07239 [paper, data]

Enhancement of Vitamin C's Protective Effect against Thimerosal-Induced Neurotoxicity in the Cerebral Cortex of Wistar Albino Rats: An <i>In Vivo</i> and Computational Study.

Journal: ACS omega

Status: data only, 3 datasets cited

[29992] doi:10.1038/s41386-024-01817-2 [paper, data]

Role of the histone variant H2A.Z.1 in memory, transcription, and alternative splicing is mediated by lysine modification.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[29993] doi:10.1038/s41467-024-45692-3 [paper, data]

Reduced progranulin increases tau and α-synuclein inclusions and alters mouse tauopathy phenotypes via glucocerebrosidase.

Journal: Nature communications

Status: data only, 1 dataset cited

[29994] doi:10.1038/s41562-024-01820-z [paper, repository]

Causal phase-dependent control of non-spatial attention in human prefrontal cortex.

Journal: Nature human behaviour

Authors' code: OSF h7ekc (no license)

Status: code verified, 3 files readable

[29995] doi:10.1038/s41592-024-02171-3 [paper, repository]

Multiscale biochemical mapping of the brain through deep-learning-enhanced high-throughput mass spectrometry.

Journal: Nature methods

Authors' code: richardxie1119/MEISTER (GPL-3.0)

Status: code verified, 37 files readable, 5 matches

[29996] doi:10.1038/s41593-023-01550-x [paper, repository]

Ripple-locked coactivity of stimulus-specific neurons and human associative memory.

Journal: Nature neuroscience

Authors' code: NeuroLuke/KunzNatureNeuroscience2024 (GPL-3.0)

Status: code verified, 117 files readable, 35 matches

[29997] doi:10.1038/s41597-024-03029-1 [paper, repository]

Multimodal single-neuron, intracranial EEG, and fMRI brain responses during movie watching in human patients.

Journal: Scientific data

Authors' code: rutishauserlab/bmovie-release-NWB-BIDS (BSD-3-Clause), mvdoc/budapest-fmri-data (MIT)

Status: code verified, 53 files readable, 25 matches

[29998] doi:10.1038/s41598-024-54302-7 [paper, data]

Characterization of enhancer activity in early human neurodevelopment using Massively Parallel Reporter Assay (MPRA) and forebrain organoids.

Journal: Scientific reports

Status: data only, 2 datasets cited

[29999] doi:10.1038/s42003-024-05825-2 [paper, repository]

Auditory stimulation during REM sleep modulates REM electrophysiology and cognitive performance.

Journal: Communications biology

Authors' code: OSF bjeq2 (no license)

Status: code verified, 3 files readable, 1 match

[30000] doi:10.1038/s44320-024-00022-z [paper, repository]

Dissecting the spatiotemporal diversity of adult neural stem cells.

Journal: Molecular systems biology

Authors' code: ncbi.nlm.nih.gov/geo/query (no license), nimitic/radial-glia (no license)

Status: code verified, 12 files readable, 8 matches

[30001] doi:10.1093/pnasnexus/pgae076 [paper, repository]

Transfer learning promotes acquisition of individual BCI skills.

Journal: PNAS nexus

Authors' code: neurosatya/TransLearning (CC0-1.0)

Status: code verified, 16 files readable

[30002] doi:10.1093/pnasnexus/pgae078 [paper, repository]

Hippocampal replay sequence governed by spontaneous brain-wide dynamics.

Journal: PNAS nexus

Authors' code: psu-mcnl/Neural-Seq (no license)

Status: code verified, 5 files readable

[30003] doi:10.1126/sciadv.adk0010 [paper, repository]

Encoding of melody in the human auditory cortex.

Journal: Science advances

Authors' code: magenta (no license), Zenodo 8381672 (CC-BY-4.0)

Status: code verified

[30004] doi:10.1159/000537813 [paper, data]

Acromegalic Rat Model Presented Cognitive Impairments and Tau Hyperphosphorylation in the Hippocampus.

Journal: Neuroendocrinology

Status: data only, 1 dataset cited

[30005] doi:10.1161/hypertensionaha.123.21798 [paper, repository]

T- and L-Type Calcium Channels Maintain Calcium Oscillations in the Murine Zona Glomerulosa.

Journal: Hypertension (Dallas, Tex. : 1979)

Authors' code: dhoangan/Cacna1hKO (no license)

Status: code verified, 102 files readable, 7 matches

[30006] doi:10.1186/s12967-024-04945-x [paper, data]

Technological Vanguard: the outstanding performance of the LTY-CNN model for the early prediction of epileptic seizures.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[30007] doi:10.1186/s13287-024-03658-8 [paper, data]

The m&lt;sup&gt;6&lt;/sup&gt;A methylation and expression profiles of mouse neural stem cells after hypoxia/reoxygenation.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[30008] doi:10.1371/journal.pbio.3002500 [paper, repository]

Neurons in the monkey frontopolar cortex encode learning stage and goal during a fast learning task.

Journal: PLoS biology

Authors' code: OSF ynzuq (no license)

Status: code verified, 1 file readable

[30009] doi:10.1371/journal.pbio.3002520 [paper, repository]

Sequential neuronal processing of number values, abstract decision, and action in the primate prefrontal cortex.

Journal: PLoS biology

Authors' code: figshare 25046987 (CC-BY-4.0)

Status: code verified, 11 files readable, 2 matches

[30010] doi:10.1371/journal.pone.0298148 [paper, data]

Therapeutic effect of Sanhua decoction on rats with middle cerebral artery occlusion and the associated changes in gut microbiota and short-chain fatty acids.

Journal: PloS one

Status: data only, 1 dataset cited

[30011] doi:10.3390/ph17020254 [paper, repository]

Decreased Brain Serotonin in <i>rbfox1</i> Mutant Zebrafish and Partial Reversion of Behavioural Alterations by the SSRI Fluoxetine.

Journal: Pharmaceuticals (Basel, Switzerland)

Authors' code: polavieja_lab/idtrackerai (GPL-3.0)

Status: code verified, 96 files readable

[30012] doi:10.7554/elife.85646 [paper, repository]

Parahippocampal neurons encode task-relevant information for goal-directed navigation.

Journal: eLife

Authors' code: alexgonzl/treemaze (MIT), alexgonzl/TMA (MIT)

Status: code verified, 73 files readable, 8 matches

Thursday, 15 February 2024 (23 papers, 4 on this page)

[30013] doi:10.1007/s10237-023-01806-2 [paper, repository]

A comparison of brain retraction mechanisms using finite element analysis and the effects of regionally heterogeneous material properties.

Journal: Biomechanics and modeling in mechanobiology

Authors' code: BRAINIACS-Group/efiSim1F_Brain_Retraction (no license)

Status: code verified, 86 files readable, 6 matches

[30014] doi:10.1016/j.dib.2024.110197 [paper, repository]

An fMRI dataset of social and nonsocial reward processing in young adults.

Journal: Data in brief

Authors' code: DVS-Lab/ISTART-DataInBrief (CC0-1.0)

Status: code verified, 15 files readable, 1 match

[30015] doi:10.1016/j.identj.2024.01.008 [paper, repository]

Associations Between Temporomandibular Disorders and Brain Imaging-Derived Phenotypes.

Journal: International dental journal

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable, 1 match

[30016] doi:10.1016/j.isci.2024.109230 [paper]

Dendritic effects of tDCS insights from a morphologically realistic model neuron.

Journal: iScience

Status: code on request

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