Every paper, by date: page 135

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 135 of 200: 15 February 2024 to 6 February 2024.

Thursday, 15 February 2024 (23 papers, 19 on this page)

[30017] doi:10.1016/j.isci.2024.109231 [paper]

ApoE maintains neuronal integrity via microRNA and H3K27me3-mediated repression.

Journal: iScience

Status: code on request

[30018] doi:10.1016/j.isci.2024.109236 [paper]

Mechanisms of HIV-mediated blood-brain barrier compromise and leukocyte transmigration under the current antiretroviral era.

Journal: iScience

Status: code on request

[30019] doi:10.1016/j.isci.2024.109239 [paper]

Aβ∗56 is a stable oligomer that impairs memory function in mice.

Journal: iScience

Status: code on request

[30020] doi:10.1038/s41540-024-00340-w [paper, repository]

Evaluation of single-sample network inference methods for precision oncology.

Journal: NPJ systems biology and applications

Authors' code: wys8c764/CSN (no license), Marscolono/SSPGI (no license), CBIGR/single_sample_networks (MIT)

Status: code verified, 47 files readable, 19 matches

[30021] doi:10.1038/s41593-023-01568-1 [paper, repository]

A neuron-glia lipid metabolic cycle couples daily sleep to mitochondrial homeostasis.

Journal: Nature neuroscience

Authors' code: academics.skidmore.edu/blogs/cvecsey (no license)

Status: code verified

[30022] doi:10.1038/s41598-024-54357-6 [paper, data]

Identification of immunogenic cell death-related genes involved in Alzheimer's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30023] doi:10.1038/s41598-024-54435-9 [paper, data]

Loss of noggin1, a classic embryonic inducer gene, in elasmobranchs.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30024] doi:10.1038/s44318-024-00049-w [paper, data]

LET-381/FoxF and its target UNC-30/Pitx2 specify and maintain the molecular identity of C. elegans mesodermal glia that regulate motor behavior.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[30025] doi:10.1073/pnas.2317343121 [paper, repository]

Cysteine induces mitochondrial reductive stress in glioblastoma through hydrogen peroxide production.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Ekn2484/Glioma-Cysteine-Metabolism (no license), krumsieklab/glioma-cysteine (no license)

Status: code verified, 4 files readable, 1 match

[30026] doi:10.1093/braincomms/fcae049 [paper, repository]

Brain dynamics predictive of response to psilocybin for treatment-resistant depression.

Journal: Brain communications

Authors' code: jvohryzek/psilodep_modelling (no license)

Status: code verified, 55 files readable, 5 matches

[30027] doi:10.1101/2024.02.14.24302815 [paper, data]

Distinct impact modes of polygenic disposition to dyslexia in the adult brain

Journal: medRxiv (preprint)

Status: data only, 1 dataset cited

[30028] doi:10.1371/journal.pbio.3002498 [paper, data]

Original speech and its echo are segregated and separately processed in the human brain.

Journal: PLoS biology

Status: data only, 1 dataset cited

[30029] doi:10.1523/eneuro.0352-23.2024 [paper, repository]

A Semi-supervised Pipeline for Accurate Neuron Segmentation with Fewer Ground Truth Labels.

Journal: eNeuro

Authors' code: YijunBao/Shallow-UNet-Neuron-Segmentation_SUNS (GPL-2.0), caseymbaker/SemiSupervisedNeuronSegmentation2p (no license)

Status: code verified, 118 files readable, 10 matches

[30030] doi:10.1523/eneuro.0388-23.2023 [paper, data]

Microbiome Depletion Increases Fentanyl Self-Administration and Alters the Striatal Proteome Through Short-Chain Fatty Acids.

Journal: eNeuro

Status: data only, 1 dataset cited

[30031] doi:10.3389/fpsyt.2024.1165424 [paper, repository]

Explainable fuzzy clustering framework reveals divergent default mode network connectivity dynamics in schizophrenia.

Journal: Frontiers in psychiatry

Authors' code: cae67/Fuzzy_Clustering (no license)

Status: code verified, 2 files readable, 4 matches

[30032] doi:10.3389/fradi.2024.1339612 [paper, data]

Beyond images: an integrative multi-modal approach to chest x-ray report generation.

Journal: Frontiers in radiology

Status: data only, 1 dataset cited

[30033] doi:10.3390/s24041226 [paper, data]

Brain Wearables: Validation Toolkit for Ear-Level EEG Sensors.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[30034] doi:10.7554/elife.89594 [paper, repository]

Cell-type-specific <i>cis</i>-regulatory divergence in gene expression and chromatin accessibility revealed by human-chimpanzee hybrid cells.

Journal: eLife

Authors' code: banwang27/multi-celltypes (MIT)

Status: code verified, 124 files readable, 26 matches

[30035] doi: [paper]

The HIF transcription network exerts innate antiviral activity in neurons and limits brain inflammation

Journal: Cell reports

Status: code on request

Wednesday, 14 February 2024 (38 papers)

[30036] doi:10.1016/j.celrep.2024.113801 [paper, repository]

DLK signaling in axotomized neurons triggers complement activation and loss of upstream synapses.

Journal: Cell reports

Authors' code: s-andrews/FastQC (GPL-3.0), alexdobin/STAR (MIT), hartleys/QoRTs (MIT), mikelove/DESeq2 (no license)

Status: code verified, 626 files readable, 1 match

[30037] doi:10.1016/j.dcn.2024.101358 [paper, repository]

Sex and pubertal variation in reward-related behavior and neural activation in early adolescents.

Journal: Developmental cognitive neuroscience

Authors' code: marjolein15/Cleaning-ABCD-hormone-data (GPL-2.0)

Status: code verified, 4 files readable, 1 match

[30038] doi:10.1016/j.heliyon.2024.e26219 [paper, data]

Analysis of the role of PANoptosis in seizures via integrated bioinformatics analysis and experimental validation.

Journal: Heliyon

Status: data only, 1 dataset cited

[30039] doi:10.1016/j.xpro.2024.102885 [paper, repository]

Gaussian-process-based Bayesian optimization for neurostimulation interventions in rats.

Journal: STAR protocols

Authors' code: mbonizzato/EduOptimNeurostim (BSD-2-Clause), Zenodo 10494808 (CC-BY-4.0), mbonizzato/OptimizeNeurostim (BSD-3-Clause)

Status: code verified, 43 files readable, 3 matches

[30040] doi:10.1038/s41380-024-02450-7 [paper, repository]

Divergent suicidal symptomatic activations converge on somato-cognitive action network in depression.

Journal: Molecular psychiatry

Authors' code: neuroanatomyandconnectivity/gradient_analysis (MIT), rmarkello/abagen (BSD-3-Clause)

Status: code verified, 68 files readable, 4 matches

[30041] doi:10.1038/s41388-024-02967-9 [paper, data]

Heterogeneity and tumoral origin of medulloblastoma in the single-cell era.

Journal: Oncogene

Status: data only, 1 dataset cited

[30042] doi:10.1038/s41398-024-02810-5 [paper, repository]

Pervasive alterations of intra-axonal volume and network organization in young children with a 16p11.2 deletion.

Journal: Translational psychiatry

Authors' code: stsa-research (no license)

Status: code verified

[30043] doi:10.1038/s41467-024-45285-0 [paper, data]

In vitro induction of patterned branchial arch-like aggregate from human pluripotent stem cells.

Journal: Nature communications

Status: data only, 1 dataset cited

[30044] doi:10.1038/s41531-024-00646-w [paper, repository]

Differences in brain aging between sexes in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: medicslab/Bias_Correction (no license)

Status: empty repository, 1 file readable

[30045] doi:10.1038/s41539-024-00221-1 [paper, data]

Harmonic memory signals in the human cerebral cortex induced by semantic relatedness of words.

Journal: NPJ science of learning

Status: code on request, 1 dataset cited

[30046] doi:10.1038/s41586-024-07042-7 [paper, repository]

A model of human neural networks reveals NPTX2 pathology in ALS and FTLD.

Journal: Nature

Authors' code: Zenodo 8142336 (CC-BY-4.0)

Status: code verified

[30047] doi:10.1038/s41586-024-07069-w [paper, repository]

A single-cell time-lapse of mouse prenatal development from gastrula to birth.

Journal: Nature

Authors' code: marcomusy/welsh_embryo_stager (MIT), JunyueC/sci-RNA-seq3_pipeline (no license), ChengxiangQiu/JAX_code (no license), MarioniLab/EmbryoTimecourse2018 (no license)

Status: code verified, 126 files readable, 40 matches

[30048] doi:10.1038/s41586-024-07084-x [paper, data]

Visuo-frontal interactions during social learning in freely moving macaques.

Journal: Nature

Status: code on request, 1 dataset cited

[30049] doi:10.1038/s41598-024-54156-z [paper, data]

Potential Alzheimer's early biomarkers in a transgenic rat model and benefits of diazoxide/dibenzoylmethane co-treatment on spatial memory and AD-pathology.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30050] doi:10.1038/s41598-024-54176-9 [paper]

Corticostriatal activity related to performance during continuous de novo motor learning.

Journal: Scientific reports

Status: code on request

[30051] doi:10.1038/s41598-024-54186-7 [paper, repository]

Explainable hybrid vision transformers and convolutional network for multimodal glioma segmentation in brain MRI.

Journal: Scientific reports

Authors' code: razeineldin/TransXAI (MIT)

Status: code verified, 10 files readable, 5 matches

[30052] doi:10.1038/s41598-024-54298-0 [paper, data]

Location-specific deviant responses to object sequences in macaque inferior temporal cortex.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30053] doi:10.1073/pnas.2310561121 [paper, data]

Cochlear zinc signaling dysregulation is associated with noise-induced hearing loss, and zinc chelation enhances cochlear recovery.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[30054] doi:10.1073/pnas.2314855121 [paper, data]

Dynamic fading memory and expectancy effects in the monkey primary visual cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[30055] doi:10.1093/pnasnexus/pgae061 [paper, repository]

Identifying content-invariant neural signatures of perceptual vividness.

Journal: PNAS nexus

Authors' code: benjybarnett/abstract-awareness (MIT)

Status: code verified, 2,000 files readable, 2 matches

[30056] doi:10.1098/rsbl.2023.0519 [paper, repository]

IR76b-expressing neurons in <i>Drosophila melanogaster</i> are necessary for associative reward learning of an amino acid mixture.

Journal: Biology letters

Authors' code: doi:10.6084/m9.figshare.c.7068150 (no license)

Status: code found, still to be checked

[30057] doi:10.1111/eva.13655 [paper, repository]

Long non-coding RNAs mediate fish gene expression in response to ocean acidification.

Journal: Evolutionary applications

Authors' code: jinglkang/lncRNAs_detect (no license)

Status: code verified, 5 files readable

[30058] doi:10.1126/sciadv.adk2317 [paper, data]

A mechanism of lysosomal calcium entry.

Journal: Science advances

Status: data only, 1 dataset cited

[30059] doi:10.1186/s12864-024-09967-9 [paper, repository]

Identification of gene biomarkers for brain diseases via multi-network topological semantics extraction and graph convolutional network.

Journal: BMC genomics

Authors' code: ColeLab/ColeAnticevicNetPartition (other), Weihankk/M-GBBD (no license)

Status: code verified, 35 files readable

[30060] doi:10.1186/s12877-024-04766-z [paper, data]

Cognitive, psychological, and physiological effects of a web-based mindfulness intervention in older adults during the COVID-19 pandemic: an open study.

Journal: BMC geriatrics

Status: data only, 1 dataset cited

[30061] doi:10.1523/eneuro.0163-23.2023 [paper]

High-Gamma Activity Is Coupled to Low-Gamma Oscillations in Precentral Cortices and Modulates with Movement and Speech.

Journal: eNeuro

Status: code on request

[30062] doi:10.3389/fgene.2024.1308234 [paper]

Loss of NSD2 causes dysregulation of synaptic genes and altered H3K36 dimethylation in mice.

Journal: Frontiers in genetics

Status: data only

[30063] doi:10.3389/fnagi.2024.1340117 [paper, data]

Enriched oxygen improves age-related cognitive impairment through enhancing autophagy.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[30064] doi:10.3389/fnana.2024.1342762 [paper, repository]

NeuroEditor: a tool to edit and visualize neuronal morphologies.

Journal: Frontiers in neuroanatomy

Authors' code: vg-lab/NeuroEditor (GPL-3.0), vg-lab.es/neuroeditor (no license)

Status: code verified, 40 files readable, 3 matches

[30065] doi:10.3389/fncel.2024.1287123 [paper, data]

Optimal decoding of neural dynamics occurs at mesoscale spatial and temporal resolutions.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[30066] doi:10.3389/fncel.2024.1353895 [paper, repository]

Kinetics and functional consequences of BK channels activation by N-type Ca²⁺ channels in the dendrite of mouse neocortical layer-5 pyramidal neurons.

Journal: Frontiers in cellular neuroscience

Authors' code: modeldb:2015410 (no license)

Status: code verified

[30067] doi:10.3389/fneur.2024.1340365 [paper, data]

The effects of occipital and parietal tDCS on chronic visual field defects after brain injury.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[30068] doi:10.3389/fnins.2024.1293962 [paper, repository]

MISNet: multi-source information-shared EEG emotion recognition network with two-stream structure.

Journal: Frontiers in neuroscience

Authors' code: VoiceBeer/MS-MDA (MIT)

Status: code verified, 21 files readable, 1 match

[30069] doi:10.3389/fnmol.2024.1327472 [paper, data]

Astrocytes in intracerebral hemorrhage: impact and therapeutic objectives.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[30070] doi:10.3389/fphar.2024.1323491 [paper, data]

Gene editing improves endoplasmic reticulum-mitochondrial contacts and unfolded protein response in Friedreich's ataxia iPSC-derived neurons.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[30071] doi:10.3389/fpsyg.2024.1325499 [paper, data]

Flicker light stimulation enhances the emotional response to music: a comparison study to the effects of psychedelics.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[30072] doi:10.3758/s13415-024-01164-1 [paper, repository]

Beneficial effects of communicating intentions when delivering moral criticism: Cognitive and neural responses.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF 9kmgd (no license)

Status: code verified, 3 files readable

[30073] doi:10.7554/elife.87356 [paper, repository]

A dynamical computational model of theta generation in hippocampal circuits to study theta-gamma oscillations during neurostimulation.

Journal: eLife

Authors' code: nikvard/memstim-hh (GPL-3.0)

Status: code verified, 92 files readable, 19 matches

Tuesday, 13 February 2024 (29 papers)

[30074] doi:10.1002/advs.202305626 [paper, repository]

Predicting Single Neuron Responses of the Primary Visual Cortex with Deep Learning Model.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: ultralytics/yolov5 (AGPL-3.0), GuanLab/Sensorium2022_Challenge (no license)

Status: code verified, 168 files readable, 10 matches

[30075] doi:10.1002/hbm.26535 [paper, repository]

How do tasks impact the reliability of fMRI functional connectivity?

Journal: Human brain mapping

Authors' code: BrayNeuroimagingLab/BNL_open (no license)

Status: code verified, 160 files readable, 12 matches

[30076] doi:10.1016/j.ajhg.2024.01.005 [paper, data]

The association of GNB5 with Alzheimer disease revealed by genomic analysis restricted to variants impacting gene function.

Journal: American journal of human genetics

Status: data only, 1 dataset cited

[30077] doi:10.1016/j.celrep.2024.113758 [paper]

Sound-evoked adenosine release in cooperation with neuromodulatory circuits permits auditory cortical plasticity and perceptual learning.

Journal: Cell reports

Status: code on request

[30078] doi:10.1016/j.cortex.2024.01.007 [paper, data]

Linguistic and attentional factors - Not statistical regularities - Contribute to word-selective neural responses with FPVS-oddball paradigms.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Status: data only, 1 dataset cited

[30079] doi:10.1016/j.isci.2024.109156 [paper]

Trifluoperazine regulates blood-brain barrier permeability via the MLCK/p-MLC pathway to promote ischemic stroke recovery.

Journal: iScience

Status: code on request

[30080] doi:10.1016/j.isci.2024.109184 [paper, repository]

Proneural-mesenchymal antagonism dominates the patterns of phenotypic heterogeneity in glioblastoma.

Journal: iScience

Authors' code: zqfang/GSEApy (BSD-3-Clause), Harshavardhan-BV/GBM_4states (no license)

Status: code verified, 181 files readable, 2 matches

[30081] doi:10.1017/neu.2024.2 [paper, repository]

White matter tract alterations in schizophrenia identified by DTI-based probabilistic tractography: a multisite harmonisation study.

Journal: Acta neuropsychiatrica

Authors' code: pnlbwh/pnlutil (no license)

Status: code verified, 256 files readable

[30082] doi:10.1038/s41380-023-02398-0 [paper, repository]

Bipolar patients display stoichiometric imbalance of gene expression in post-mortem brain samples.

Journal: Molecular psychiatry

Authors' code: comgen/SI_RNAseq (no license)

Status: code verified, 5 files readable, 12 matches

[30083] doi:10.1038/s41467-023-43822-x [paper, data]

Cryo-EM structures of lipidic fibrils of amyloid-β (1-40).

Journal: Nature communications

Status: data only, 1 dataset cited

[30084] doi:10.1038/s41467-024-45409-6 [paper, data]

Intrauterine growth and the tangential expansion of the human cerebral cortex in times of food scarcity and abundance.

Journal: Nature communications

Status: data only, 2 datasets cited

[30085] doi:10.1038/s41467-024-45532-4 [paper, data]

Larval microbiota primes the Drosophila adult gustatory response.

Journal: Nature communications

Status: data only, 1 dataset cited

[30086] doi:10.1038/s41467-024-45590-8 [paper, data]

Neuromorphic electro-stimulation based on atomically thin semiconductor for damage-free inflammation inhibition.

Journal: Nature communications

Status: data only, 1 dataset cited

[30087] doi:10.1038/s41597-024-03023-7 [paper, repository]

An open dataset for human SSVEPs in the frequency range of 1-60 Hz.

Journal: Scientific data

Authors' code: figshare 23641092 (CC-BY-4.0)

Status: code verified, 28 files readable, 2 matches

[30088] doi:10.1038/s41598-024-53494-2 [paper, repository]

Integrative analysis of epilepsy-associated genes reveals expression-phenotype correlations.

Journal: Scientific reports

Authors' code: Lilywindy2022/Epilepsy-gene-expression (no license)

Status: code verified, 7 files readable, 9 matches

[30089] doi:10.1038/s41598-024-54251-1 [paper, repository]

Deep learning predicts prevalent and incident Parkinson's disease from UK Biobank fundus imaging.

Journal: Scientific reports

Authors' code: lab-smile/RetinaPD (no license)

Status: code verified, 20 files readable, 7 matches

[30090] doi:10.1038/s42003-024-05846-x [paper, repository]

Bounded contribution of human early visual cortex to the topographic anisotropy in spatial extent perception.

Journal: Communications biology

Authors' code: OSF wrdt9 (no license)

Status: empty repository

[30091] doi:10.1073/pnas.2306936121 [paper, data]

The central renin-angiotensin system: A genetic pathway, functional decoding, and selective target engagement characterization in humans.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[30092] doi:10.1101/gad.351104.123 [paper, data]

A mutation in the low-complexity domain of splicing factor hnRNPA1 linked to amyotrophic lateral sclerosis disrupts distinct neuronal RNA splicing networks.

Journal: Genes & development

Status: data only, 1 dataset cited

[30093] doi:10.1117/1.nph.11.s1.s11506 [paper, data]

Advancing the path to &lt;i&gt;in-vivo&lt;/i&gt; imaging in freely moving mice via multimode-multicore fiber based holographic endoscopy.

Journal: Neurophotonics

Status: data only, 1 dataset cited

[30094] doi:10.1186/s12885-024-11914-6 [paper, repository]

Integrated transcriptomics uncovers an enhanced association between the prion protein gene expression and vesicle dynamics signatures in glioblastomas.

Journal: BMC cancer

Authors' code: marilenehohmuth/GlioblastomaDiscovery (MIT)

Status: code verified, 10 files readable, 16 matches

[30095] doi:10.1186/s12987-024-00516-w [paper, repository]

Deep learning segmentation of peri-sinus structures from structural magnetic resonance imaging: validation and normative ranges across the adult lifespan.

Journal: Fluids and barriers of the CNS

Authors' code: hettk/spesis (other)

Status: empty repository, 2 files readable

[30096] doi:10.1186/s13293-024-00589-0 [paper, data]

Nrf2 activation rescues stress-induced depression-like behaviour and inflammatory responses in male but not female rats.

Journal: Biology of sex differences

Status: data only, 2 datasets cited

[30097] doi:10.1212/nxi.0000000000200205 [paper, repository]

Chronic Active Lesions and Larger Choroid Plexus Explain Cognition and Fatigue in Multiple Sclerosis.

Journal: Neurology(R) neuroimmunology & neuroinflammation

Authors' code: sunhongfu/QSM (MIT)

Status: code verified, 165 files readable, 2 matches

[30098] doi:10.1242/dev.201934 [paper, data]

Hindbrain boundaries as niches of neural progenitor and stem cells regulated by the extracellular matrix proteoglycan chondroitin sulphate.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[30099] doi:10.3389/fnins.2024.1306344 [paper, repository]

Study protocol: Cerebral characterization of sensory gating in disconnected dreaming states during propofol anesthesia using fMRI.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 8117861 (other-open)

Status: code verified, 15 files readable, 3 matches

[30100] doi:10.3389/fpsyt.2024.1352641 [paper, data]

Exploring global and local processes underlying alterations in resting-state functional connectivity and dynamics in schizophrenia.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[30101] doi:10.3390/ijms25042233 [paper, data]

Involvement of Mitochondria in the Selective Response to Microsecond Pulsed Electric Fields on Healthy and Cancer Stem Cells in the Brain.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[30102] doi:10.3758/s13415-024-01166-z [paper, data]

A negative emotional state impairs individuals' ability to filter distractors from working memory: an ERP study.

Journal: Cognitive, affective & behavioral neuroscience

Status: data only, 1 dataset cited

Monday, 12 February 2024 (20 papers)

[30103] doi:10.1007/s10571-024-01453-w [paper, data]

Disease-Associated Neurotoxic Astrocyte Markers in Alzheimer Disease Based on Integrative Single-Nucleus RNA Sequencing.

Journal: Cellular and molecular neurobiology

Status: data only, 1 dataset cited

[30104] doi:10.1016/j.dib.2024.110181 [paper, data]

Increasing accessibility to a large brain-computer interface dataset: Curation of physionet EEG motor movement/imagery dataset for decoding and classification.

Journal: Data in brief

Status: data only, 4 datasets cited

[30105] doi:10.1016/j.patter.2024.100930 [paper, repository]

Using a deep generation network reveals neuroanatomical specificity in hemispheres.

Journal: Patterns (New York, N.Y.)

Authors' code: Zenodo 10466961 (CC-BY-4.0), book-book24/hemispheric-specializations (MIT)

Status: code verified, 14 files readable, 1 match

[30106] doi:10.1038/s41398-024-02797-z [paper, repository]

Personalized functional network mapping for autism spectrum disorder and attention-deficit/hyperactivity disorder.

Journal: Translational psychiatry

Authors' code: hmlicas/Collaborative_Brain_Decomposition (no license)

Status: code verified, 373 files readable

[30107] doi:10.1038/s41467-024-44934-8 [paper, repository]

Rat superior colliculus encodes the transition between static and dynamic vision modes.

Journal: Nature communications

Authors' code: figshare 24804948 (CC-BY-4.0)

Status: code verified, 3 files readable, 8 matches

[30108] doi:10.1038/s41467-024-45729-7 [paper, repository]

The secondary somatosensory cortex gates mechanical and heat sensitivity.

Journal: Nature communications

Authors' code: katemartian/Photometry_data_processing (GPL-3.0)

Status: code verified, 16 files readable, 2 matches

[30109] doi:10.1038/s41593-024-01569-8 [paper]

Basal ganglia-spinal cord pathway that commands locomotor gait asymmetries in mice.

Journal: Nature neuroscience

Status: code on request

[30110] doi:10.1038/s41598-024-53733-6 [paper]

A novel CNN architecture for accurate early detection and classification of Alzheimer's disease using MRI data.

Journal: Scientific reports

Status: code on request

[30111] doi:10.1038/s41598-024-53907-2 [paper, repository]

Neuronal travelling waves explain rotational dynamics in experimental datasets and modelling.

Journal: Scientific reports

Authors' code: bantin/jPCA (MIT), NevVerVer/neural-dynamics-gyration (MIT)

Status: code verified, 29 files readable, 3 matches

[30112] doi:10.1101/2024.02.12.579892 [paper, repository]

Zapit: Open Source Laser-Scanning Photostimulation For Neuroscience

Journal: bioRxiv (preprint)

Authors' code: zapit-optostim/zapit_cad (BSD-3-Clause), Zapit-Optostim/zapit (LGPL-2.1), SWC-Advanced-Microscopy/MATLAB_DAQmx_examples (LGPL-3.0), SWC-Advanced-Microscopy/Python_DAQmx_examples (GPL-3.0), Zapit-Optostim (no license), Zapit-Optostim/overleaf-manuscript (CC-BY-4.0)

Status: code verified, 296 files readable, 18 matches

[30113] doi:10.1162/imag_a_00091 [paper, repository]

Detection of respiration-induced field modulations in fMRI: A concurrent and navigator-free approach.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: kamesy/QSM.jl (MIT), kamesy/QSM.m (MIT), alexjaffray/fMRI-phase-toolbox (MIT)

Status: code verified, 273 files readable, 7 matches

[30114] doi:10.1162/imag_a_00092 [paper, repository]

Disentangling the neural correlates of semantic and domain-general control: The roles of stimulus domain and task process.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Vicki-H/Disentangling-task-stimulus (no license)

Status: code verified, 9 files readable, 3 matches

[30115] doi:10.1371/journal.pcbi.1011844 [paper, repository]

Learning what matters: Synaptic plasticity with invariance to second-order input correlations.

Journal: PLoS computational biology

Authors' code: cstein06/correlation-invariance (GPL-3.0)

Status: code verified, 67 files readable, 3 matches

[30116] doi:10.1371/journal.pone.0296827 [paper, repository]

A phase-shifting anterior-posterior network organizes global phase relations.

Journal: PloS one

Authors' code: supp:PMC10861041/pone.0296827.s002.m (no license)

Status: code verified, 1 file readable

[30117] doi:10.1523/eneuro.0194-23.2023 [paper, repository]

Paternal Prenatal and Lactation Exposure to a High-Calorie Diet Shapes Transgenerational Brain Macro- and Microstructure Defects, Impacting Anxiety-Like Behavior in Male Offspring Rats.

Journal: eNeuro

Authors' code: Mouse-Imaging-Centre/pydpiper (BSD-3-Clause)

Status: code verified, 69 files readable, 2 matches

[30118] doi:10.3389/fimmu.2024.1290523 [paper, repository]

Cognition-associated long noncoding RNAs are dysregulated upon severe COVID-19.

Journal: Frontiers in immunology

Authors' code: jonathandlee12/covid19-brain-lnc (no license)

Status: code verified, 2 files readable, 3 matches

[30119] doi:10.3389/fnins.2024.1340854 [paper, data]

Transcriptomic analysis reveals prolonged neurodegeneration in the hippocampus of adult C57BL/6N mouse deafened by noise.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[30120] doi:10.7554/elife.88439 [paper, repository]

Correlated signatures of social behavior in cerebellum and anterior cingulate cortex.

Journal: eLife

Authors' code: sotmasman/Silicon-microprobes (MIT), Aharoni-Lab/Ephys-Miniscope (no license), Aharoni-Lab/Miniscope-DAQ-Cypress-firmware (no license), daharoni/Miniscope_DAQ_Software (MIT), golshanilab/Escope_Social_Cerebellum_ACC (no license)

Status: code verified, 465 files readable, 2 matches

[30121] doi:10.7554/elife.90597 [paper, repository]

Hippocampome.org 2.0 is a knowledge base enabling data-driven spiking neural network simulations of rodent hippocampal circuits.

Journal: eLife

Authors' code: Hippocampome-Org/php_v2 (no license)

Status: code verified, 786 files readable, 5 matches

[30122] doi:10.7554/elife.90648 [paper, repository]

CryoEM structures of the human CLC-2 voltage-gated chloride channel reveal a ball-and-chain gating mechanism.

Journal: eLife

Authors' code: Zenodo 10397869 (CC-BY-4.0)

Status: code verified

Sunday, 11 February 2024 (4 papers)

[30123] doi:10.1002/advs.202304609 [paper, data]

Radiotherapy-Induced Astrocyte Senescence Promotes an Immunosuppressive Microenvironment in Glioblastoma to Facilitate Tumor Regrowth.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[30124] doi:10.1038/s41598-024-53349-w [paper, data]

Classification and identification of agricultural products based on improved MobileNetV2.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30125] doi:10.3390/cancers16040750 [paper, repository]

PathoGraph: An Attention-Based Graph Neural Network Capable of Prognostication Based on CD276 Labelling of Malignant Glioma Cells.

Journal: Cancers

Authors' code: guoqingbao/pathofusion (Apache-2.0)

Status: code verified, 72 files readable, 2 matches

[30126] doi:10.7150/thno.92700 [paper, data]

Forskolin-driven conversion of human somatic cells into induced neurons through regulation of the cAMP-CREB1-JNK signaling.

Journal: Theranostics

Status: data only, 1 dataset cited

Saturday, 10 February 2024 (10 papers)

[30127] doi:10.1016/j.heliyon.2024.e25661 [paper, repository]

Enhanced attention in rats following blast-induced traumatic brain injury.

Journal: Heliyon

Authors' code: OSF d8hqr (no license)

Status: code verified, 1 file readable

[30128] doi:10.1016/j.isci.2024.109205 [paper]

Offline orbitofrontal cortex reactivation depends on recency of place-reward changes and coheres with hippocampal replay.

Journal: iScience

Status: code on request

[30129] doi:10.1016/j.isci.2024.109207 [paper, data]

LncRNA <i>Litchi</i> is a regulator for harmonizing maturity and resilient functionality in spinal motor neurons.

Journal: iScience

Status: code on request, 2 datasets cited

[30130] doi:10.1016/j.xpro.2024.102889 [paper]

Protocol to investigate Parkinson's patient-derived dopaminergic neurons by live-cell microscopy and oxidized dopamine assays.

Journal: STAR protocols

Status: code on request

[30131] doi:10.1038/s41467-024-45417-6 [paper, repository]

Mesoscopic calcium imaging in a head-unrestrained male non-human primate using a lensless microscope.

Journal: Nature communications

Authors' code: JiminWu/Bio-FlatScopeNHP (no license), Zenodo 10403840 (CC-BY-4.0)

Status: code verified, 118 files readable, 3 matches

[30132] doi:10.1038/s41467-024-45515-5 [paper, repository]

Transient targeting of hypothalamic orexin neurons alleviates seizures in a mouse model of epilepsy.

Journal: Nature communications

Authors' code: figshare 24167898 (CC-BY-4.0)

Status: code verified, 13 files readable, 3 matches

[30133] doi:10.1038/s41537-024-00440-w [paper]

Association study of the complement component C4 gene and suicide risk in schizophrenia.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[30134] doi:10.1038/s42003-024-05832-3 [paper, repository]

Avialan-like brain morphology in Sinovenator (Troodontidae, Theropoda).

Journal: Communications biology

Authors' code: doi:10.5061/dryad.41ns1rnk6 (no license), doi:10.5061/dryad.41ns1rnk6.phylogenetic (no license)

Status: code verified

[30135] doi:10.1093/conphys/coae001 [paper, repository]

Effects of temperature acclimation on the upper thermal tolerance of two Arctic fishes.

Journal: Conservation physiology

Authors' code: COMBINE-lab/salmon (BSD-3-Clause)

Status: code verified, 95 files readable

[30136] doi:10.1177/0271678x241232197 [paper, repository]

Quantification of brain-wide vascular resistivity via ultrafast Doppler in human neonates helps early detection of white matter injury.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: timjerman/JermanEnhancementFilter (BSD-3-Clause)

Status: code verified, 11 files readable, 1 match

Friday, 9 February 2024 (40 papers)

[30137] doi:10.1007/s00213-024-06540-w [paper, data]

The impact of doxycycline on human contextual fear memory.

Journal: Psychopharmacology

Status: data only, 1 dataset cited

[30138] doi:10.1007/s12021-024-09652-y [paper, repository]

Network Representation of fMRI Data Using Visibility Graphs: The Impact of Motion and Test-Retest Reliability.

Journal: Neuroinformatics

Authors' code: vanessa-silva/NetF (Artistic-2.0), govin2000/vganalysis (no license)

Status: code verified, 26 files readable

[30139] doi:10.1016/j.heliyon.2024.e25910 [paper, repository]

Simultaneous two-photon imaging and wireless EEG recording in mice.

Journal: Heliyon

Authors' code: harnett/Shiqian-analysis (no license), ss276/EEG (no license)

Status: code verified, 46 files readable, 5 matches

[30140] doi:10.1016/j.heliyon.2024.e26028 [paper, repository]

A novel approach to identify the brain regions that best classify ADHD by means of EEG and deep learning.

Journal: Heliyon

Authors' code: lucentia/brain-regions-adhd-eeg-deep-learning (MIT)

Status: code verified, 13 files readable, 2 matches

[30141] doi:10.1016/j.isci.2024.109162 [paper, repository]

Dynamics of brain-muscle networks reveal effects of age and somatosensory function on gait.

Journal: iScience

Authors' code: Zenodo 2611375 (other-open), manlius/muxViz (GPL-3.0), tjeerdboonstra/time-freq (no license)

Status: code verified, 130 files readable, 3 matches

[30142] doi:10.1016/j.isci.2024.109165 [paper]

S100A9 aggravates early brain injury after subarachnoid hemorrhage via inducing neuroinflammation and inflammasome activation.

Journal: iScience

Status: code on request

[30143] doi:10.1016/j.isci.2024.109166 [paper, repository]

Homozygous ALS-linked mutations in TARDBP/TDP-43 lead to hypoactivity and synaptic abnormalities in human iPSC-derived motor neurons.

Journal: iScience

Authors' code: dxe303/MiCM-summer-project (no license)

Status: code verified, 21 files readable

[30144] doi:10.1016/j.isci.2024.109182 [paper]

Investigation of vagal sensory neurons in mice using optical vagal stimulation and tracheal neuroanatomy.

Journal: iScience

Status: code on request

[30145] doi:10.1016/j.lanepe.2024.100870 [paper, repository]

The impact of psychiatric comorbidity on Parkinson's disease outcomes: a systematic review and meta-analysis.

Journal: The Lancet regional health. Europe

Authors' code: CameronWatson2020/pd_neuropsychiatry (no license)

Status: code verified, 1 file readable

[30146] doi:10.1016/j.xpro.2024.102882 [paper, repository]

Brain-wide multi-fiber recording of neuronal activity in freely moving mice.

Journal: STAR protocols

Authors' code: Zenodo 8428784 (CC-BY-4.0)

Status: code verified

[30147] doi:10.1038/s41380-024-02426-7 [paper, repository]

Using brain structural neuroimaging measures to predict psychosis onset for individuals at clinical high-risk.

Journal: Molecular psychiatry

Authors' code: yh-zhu/MolPsy_2024_ENIGMA (no license)

Status: code verified, 4 files readable, 2 matches

[30148] doi:10.1038/s41380-024-02442-7 [paper, repository]

Connectome architecture shapes large-scale cortical alterations in schizophrenia: a worldwide ENIGMA study.

Journal: Molecular psychiatry

Authors' code: enigma-toolbox.readthedocs.io (no license)

Status: code verified

[30149] doi:10.1038/s41467-024-45127-z [paper, repository]

Grid-like entorhinal representation of an abstract value space during prospective decision making.

Journal: Nature communications

Authors' code: abrahamnunes.github.io/paradigms (no license), circstat/pycircstat (MIT), nitschalex/Paper_Value_Space (no license)

Status: code verified, 37 files readable, 38 matches

[30150] doi:10.1038/s41467-024-45161-x [paper, repository]

Endogenous cannabinoids in the piriform cortex tune olfactory perception.

Journal: Nature communications

Authors' code: buzsakilab/buzcode (GPL-3.0), cortex-lab/KiloSort (GPL-2.0), petersenpeter/phy-plugins (GPL-3.0)

Status: code verified, 2,074 files readable, 18 matches

[30151] doi:10.1038/s41467-024-45627-y [paper, repository]

Amyloid-β aggregates activate peripheral monocytes in mild cognitive impairment.

Journal: Nature communications

Authors' code: VingesLDB/2023_NCOMM (MIT)

Status: empty repository, 2 files readable

[30152] doi:10.1038/s41594-023-01198-y [paper, data]

Structural basis for excitatory neuropeptide signaling.

Journal: Nature structural & molecular biology

Status: data only, 1 dataset cited

[30153] doi:10.1038/s41598-023-50563-w [paper, data]

Rain may improve survival from direct lightning strikes to the human head.

Journal: Scientific reports

Status: data only, 2 datasets cited

[30154] doi:10.1038/s41598-024-53910-7 [paper, data]

Developmental loss of NMDA receptors results in supernumerary forebrain neurons through delayed maturation of transit-amplifying neuroblasts.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30155] doi:10.1038/s42003-024-05821-6 [paper, repository]

The parieto-occipital cortex is a candidate neural substrate for the human ability to approximate Bayesian inference.

Journal: Communications biology

Authors' code: OSF 3vdut (no license)

Status: code verified, 31 files readable, 28 matches

[30156] doi:10.1073/pnas.2212887121 [paper, repository]

Modeling and dissociation of intrinsic and input-driven neural population dynamics underlying behavior.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ShanechiLab/PSID (other), ShanechiLab/PyPSID (other)

Status: code verified, 34 files readable, 2 matches

[30157] doi:10.1088/1741-2552/ad228f [paper, repository]

Spike sorting in the presence of stimulation artifacts: a dynamical control systems approach.

Journal: Journal of neural engineering

Authors' code: mohammadshokriacct/electrical_spike_sorting (no license)

Status: dead link

[30158] doi:10.1093/braincomms/fcae025 [paper]

Apathy scores in Parkinson's disease relate to EEG components in an incentivized motor task.

Journal: Brain communications

Status: code on request

[30159] doi:10.1093/braincomms/fcae033 [paper, repository]

Alteration of functional connectivity network in population of objectively-defined subtle cognitive decline.

Journal: Brain communications

Authors' code: amwink/bias (GPL-3.0)

Status: code verified, 161 files readable, 3 matches

[30160] doi:10.1093/pnasnexus/pgae063 [paper, repository]

Inferring networks from time series: A neural approach.

Journal: PNAS nexus

Authors' code: ThGaskin/NeuralABM (no license)

Status: code verified, 95 files readable, 13 matches

[30161] doi:10.1126/sciadv.adk3384 [paper, data]

CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses.

Journal: Science advances

Status: data only, 1 dataset cited

[30162] doi:10.1159/000537709 [paper, data]

The Relation between Vascular Risk Factors and Flow in Cerebral Perforating Arteries: A 7 Tesla MRI Study.

Journal: Cerebrovascular diseases (Basel, Switzerland)

Status: data only, 1 dataset cited

[30163] doi:10.1162/imag_a_00087 [paper, data]

Neural correlates of cognitive ability and visuo-motor speed: Validation of IDoCT on UK Biobank Data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[30164] doi:10.1371/journal.pgen.1011137 [paper, data]

Nazo, the Drosophila homolog of the NBIA-mutated protein-c19orf12, is required for triglyceride homeostasis.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[30165] doi:10.1371/journal.pone.0296307 [paper, data]

Enrichment of infection-associated bacteria in the low biomass brain bacteriota of Alzheimer's disease patients.

Journal: PloS one

Status: data only, 1 dataset cited

[30166] doi:10.1523/eneuro.0270-20.2024 [paper, data]

Investigating the Roles of the Visual and Parietal Cortex in Representing Content versus Context in Visual Working Memory.

Journal: eNeuro

Status: data only, 1 dataset cited

[30167] doi:10.1523/eneuro.0287-23.2023 [paper, data]

Mammals Achieve Common Neural Coverage of Visual Scenes Using Distinct Sampling Behaviors.

Journal: eNeuro

Status: data only, 1 dataset cited

[30168] doi:10.3389/fneur.2024.1341342 [paper]

Nrf2 functions as a pyroptosis-related mediator in traumatic brain injury and is correlated with cytokines and disease severity: a bioinformatics analysis and retrospective clinical study.

Journal: Frontiers in neurology

Status: data only

[30169] doi:10.3389/fninf.2024.1284107 [paper, data]

The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases.

Journal: Frontiers in neuroinformatics

Status: data only, 24 datasets cited

[30170] doi:10.3389/fped.2024.1355771 [paper, data]

Current practice of intracranial pressure monitoring in children with severe traumatic brain injury-a nationwide prospective surveillance study in Germany.

Journal: Frontiers in pediatrics

Status: data only, 1 dataset cited

[30171] doi:10.3390/diagnostics14040383 [paper, data]

A Novel Ensemble Framework for Multi-Classification of Brain Tumors Using Magnetic Resonance Imaging.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 3 datasets cited

[30172] doi:10.3390/s24041143 [paper, repository]

NeoSLAM: Long-Term SLAM Using Computational Models of the Brain.

Journal: Sensors (Basel, Switzerland)

Authors' code: cappizzino/neoslam_ws (no license)

Status: code verified, 230 files readable, 4 matches

[30173] doi:10.7554/elife.85274 [paper, repository]

RatInABox, a toolkit for modelling locomotion and neuronal activity in continuous environments.

Journal: eLife

Authors' code: ratinabox-lab/ratinabox (MIT), TomGeorge1234/RatInABox (MIT)

Status: code verified, 16 files readable, 12 matches

[30174] doi:10.7554/elife.86386 [paper, repository]

Altered hierarchical auditory predictive processing after lesions to the orbitofrontal cortex.

Journal: eLife

Authors' code: OSF f9m76 (no license)

Status: code verified, 8 files readable, 2 matches

[30175] doi:10.7554/elife.95577 [paper, repository]

SRF-deficient astrocytes provide neuroprotection in mouse models of excitotoxicity and neurodegeneration.

Journal: eLife

Authors' code: swanandlab (no license), swanandlab/eLife2024 (GPL-3.0)

Status: code verified, 3 files readable

[30176] doi:10.7717/peerj.16818 [paper, data]

Study on pyroptosis-related genes Casp8, Gsdmd and Trem2 in mice with cerebral infarction.

Journal: PeerJ

Status: data only, 1 dataset cited

Thursday, 8 February 2024 (23 papers)

[30177] doi:10.1007/s00441-024-03864-z [paper]

Electron microscopic analysis of the influence of iPSC-derived motor neurons on bioengineered human skeletal muscle tissues.

Journal: Cell and tissue research

Status: code on request

[30178] doi:10.1016/j.dcn.2024.101355 [paper, repository]

Multi-level fMRI analysis applied to hemispheric specialization in the language network, functional areas, and their behavioral correlations in the ABCD sample.

Journal: Developmental cognitive neuroscience

Authors' code: Fair_lab/Cifti_conn_matrix_to_corr_dt_pt (no license), Zenodo 4571051 (other-open), dcan-labs/abcd-hcp-pipeline (BSD-3-Clause)

Status: code verified, 33 files readable, 5 matches

[30179] doi:10.1016/j.heliyon.2024.e25716 [paper]

SMG9 is a novel prognostic-related biomarker in glioma correlating with ferroptosis and immune infiltrates.

Journal: Heliyon

Status: data only

[30180] doi:10.1016/j.stemcr.2024.01.002 [paper]

ALS-related p97 R155H mutation disrupts lysophagy in iPSC-derived motor neurons.

Journal: Stem cell reports

Status: code on request

[30181] doi:10.1016/j.stemcr.2024.01.006 [paper, data]

Misidentification of neural cell identity in liver-derived organoid systems.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[30182] doi:10.1038/s41380-024-02434-7 [paper, data]

Cell type-specific expression, regulation and compensation of CDKL5 activity in mouse brain.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[30183] doi:10.1038/s41467-023-44050-z [paper, repository]

Neonatal brain dynamic functional connectivity in term and preterm infants and its association with early childhood neurodevelopment.

Journal: Nature communications

Authors' code: code-neuro.github.io/dynfc (no license), CoDe-Neuro/neonatal_dfc (MIT), Zenodo 6615603 (other-open), Zenodo 10050537 (MIT), code-neuro/dynfc (MIT)

Status: code verified, 62 files readable, 7 matches

[30184] doi:10.1038/s41467-024-45121-5 [paper, data]

Compromised transcription-mRNA export factor THOC2 causes R-loop accumulation, DNA damage and adverse neurodevelopment.

Journal: Nature communications

Status: data only, 1 dataset cited

[30185] doi:10.1038/s41597-024-02959-0 [paper, repository]

ezBIDS: Guided standardization of neuroimaging data interoperable with major data archives and platforms.

Journal: Scientific data

Authors' code: brainlife/ezbids (MIT), figshare 22578994 (CC-BY-4.0)

Status: code verified, 73 files readable, 14 matches

[30186] doi:10.1038/s41598-023-50780-3 [paper, repository]

Cortical folding correlates to aging and Alzheimer's Disease's cognitive and CSF biomarkers.

Journal: Scientific reports

Authors' code: metaBIOlab/CorticalFolding_AD_Aging (CC0-1.0), Zenodo 3608675 (CC-BY-4.0)

Status: code verified, 268 files readable, 6 matches

[30187] doi:10.1038/s41598-024-53687-9 [paper, data]

Establishment of African pygmy mouse induced pluripotent stem cells using defined doxycycline inducible transcription factors.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30188] doi:10.1038/s41598-024-53942-z [paper, repository]

Support vector machine prediction of individual Autism Diagnostic Observation Schedule (ADOS) scores based on neural responses during live eye-to-eye contact.

Journal: Scientific reports

Authors' code: xz63/SVM-indepedent-cross-validation (no license)

Status: code verified, 8 files readable, 2 matches

[30189] doi:10.1038/s41746-024-01022-x [paper, repository]

FastEval Parkinsonism: an instant deep learning-assisted video-based online system for Parkinsonian motor symptom evaluation.

Journal: NPJ digital medicine

Authors' code: yuyuan871111/fast_eval_Parkinsonism (Apache-2.0), facebookresearch/detectron2 (Apache-2.0)

Status: code verified, 556 files readable, 2 matches

[30190] doi:10.1172/jci.insight.172935 [paper, repository]

BDNF and cAMP are neuroprotective in a porcine model of traumatic optic neuropathy.

Journal: JCI insight

Authors' code: Goldberg-lab/JCI-Insight_Pig_TON_Public (MIT)

Status: code verified, 3 files readable, 1 match

[30191] doi:10.1186/s40478-024-01720-3 [paper, data]

The Schwann cell-specific G-protein Gαo (Gnao1) is a cell-intrinsic controller contributing to the regulation of myelination in peripheral nerve system.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[30192] doi:10.1371/journal.pcbi.1011801 [paper, repository]

Dynamic predictive coding: A model of hierarchical sequence learning and prediction in the neocortex.

Journal: PLoS computational biology

Authors' code: lpjiang97/dynamic-predictive-coding (no license)

Status: code verified, 19 files readable, 4 matches

[30193] doi:10.1371/journal.pone.0296217 [paper, repository]

Mechanistic role of alpha oscillations in a computational model of working memory.

Journal: PloS one

Authors' code: gustavosoroka/mechanisticalpha_paper (no license)

Status: code verified, 2 files readable, 4 matches

[30194] doi:10.1371/journal.pone.0296872 [paper, data]

A peripheral subepithelial network for chemotactile processing in the predatory sea slug Pleurobranchaea californica.

Journal: PloS one

Status: data only, 1 dataset cited

[30195] doi:10.3389/fnins.2024.1321001 [paper, repository]

All-night spectral and microstate EEG analysis in patients with recurrent isolated sleep paralysis.

Journal: Frontiers in neuroscience

Authors' code: vaclavapiorecka/sleepo (no license)

Status: code verified, 18 files readable, 2 matches

[30196] doi:10.3389/fonc.2024.1335740 [paper, data]

Brain tumor classification from MRI scans: a framework of hybrid deep learning model with Bayesian optimization and quantum theory-based marine predator algorithm.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[30197] doi:10.3389/fsurg.2024.1344263 [paper, data]

Predicting the 90-day prognosis of stereotactic brain hemorrhage patients by multiple machine learning using radiomic features combined with clinical features.

Journal: Frontiers in surgery

Status: data only, 1 dataset cited

[30198] doi:10.7554/elife.91871 [paper, repository]

Sensitization of meningeal afferents to locomotion-related meningeal deformations in a migraine model.

Journal: eLife

Authors' code: ablaeser/locomotionanalysis (GPL-3.0), ablaeser/movieprocessing (GPL-3.0), ablaeser/calciumanalysis (GPL-3.0)

Status: code verified, 184 files readable, 17 matches

[30199] doi:10.7717/peerj-cs.1792 [paper, repository]

SENSES-ASD: a social-emotional nurturing and skill enhancement system for autism spectrum disorder.

Journal: PeerJ. Computer science

Authors' code: supp:PMC10909167/peerj-cs-10-1792-s001.zip (no license)

Status: code verified, 3 files readable, 3 matches

Wednesday, 7 February 2024 (26 papers)

[30200] doi:10.1007/s00701-024-05940-3 [paper, data]

Applied deep learning in neurosurgery: identifying cerebrospinal fluid (CSF) shunt systems in hydrocephalus patients.

Journal: Acta neurochirurgica

Status: code on request, 1 dataset cited

[30201] doi:10.1016/j.isci.2024.109155 [paper]

Understanding the cognitive and neuroimaging bases underlying the detrimental impact of sleep deprivation on reciprocity.

Journal: iScience

Status: code on request

[30202] doi:10.1038/s41380-024-02437-4 [paper, repository]

Impaired striatal glutamate/GABA regulation in violent offenders with antisocial personality disorder and psychopathy.

Journal: Molecular psychiatry

Authors' code: CIC-methods/FID-A (BSD-3-Clause)

Status: code verified, 352 files readable, 4 matches

[30203] doi:10.1038/s41380-024-02439-2 [paper, data]

Lasting dynamic effects of the psychedelic 2,5-dimethoxy-4-iodoamphetamine ((±)-DOI) on cognitive flexibility.

Journal: Molecular psychiatry

Status: code on request, 1 dataset cited

[30204] doi:10.1038/s41386-024-01803-8 [paper, data]

Brain connectivity changes to fast versus slow dopamine increases.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[30205] doi:10.1038/s41467-024-45288-x [paper, repository]

Inhibitory medial zona incerta pathway drives exploratory behavior by inhibiting glutamatergic cuneiform neurons.

Journal: Nature communications

Authors' code: OSF au7ze (no license)

Status: code verified, 61 files readable, 5 matches

[30206] doi:10.1038/s41586-023-07006-3 [paper, repository]

Converting an allocentric goal into an egocentric steering signal.

Journal: Nature

Authors' code: Zenodo 10232698 (CC-BY-4.0), maimonlab/converting_allo_goal_to_ego_steering (MIT)

Status: code verified, 60 files readable, 15 matches

[30207] doi:10.1038/s41586-023-07015-2 [paper, data]

Circulating myeloid-derived MMP8 in stress susceptibility and depression.

Journal: Nature

Status: data only, 1 dataset cited

[30208] doi:10.1038/s41586-024-07039-2 [paper, repository]

Transforming a head direction signal into a goal-oriented steering command.

Journal: Nature

Authors' code: wilson-lab/WesteindeWilson_AnalysisCode (no license)

Status: code verified, 56 files readable, 24 matches

[30209] doi:10.1038/s41597-024-03013-9 [paper, repository]

An open relaxation-diffusion MRI dataset in neurosurgical studies.

Journal: Scientific data

Authors' code: pnlbwh/SlicerDiffusionQC (other), pnlbwh/structuralQC (other), dryewu/RDSI (no license)

Status: code verified, 392 files readable, 7 matches

[30210] doi:10.1038/s41598-024-51613-7 [paper, repository]

Macroscale coupling between structural and effective connectivity in the mouse brain.

Journal: Scientific reports

Authors' code: danilobenozzo/sc_ec_coupling_mouse (GPL-3.0)

Status: code verified, 9 files readable

[30211] doi:10.1038/s41598-024-53434-0 [paper, data]

Clinical and molecular study of radiation-induced gliomas.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30212] doi:10.1073/pnas.2312676121 [paper, repository]

CURTAIN-A unique web-based tool for exploration and sharing of MS-based proteomics data.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10079224 (CC-BY-4.0), noatgnu/curtain-utils (MIT), ppillot/biomsalign (MIT), Zenodo 10079193 (CC-BY-4.0), Zenodo 10079194 (CC-BY-4.0), Zenodo 10079341 (CC-BY-4.0), Zenodo 10079204 (CC-BY-4.0), Zenodo 10079222 (CC-BY-4.0), Zenodo 10079201 (CC-BY-4.0), supp:PMC10873628/pnas.2312676121.sd08.zip (no license), supp:PMC10873628/pnas.2312676121.sd09.zip (no license), supp:PMC10873628/pnas.2312676121.sd10.zip (no license), supp:PMC10873628/pnas.2312676121.sd11.zip (no license), supp:PMC10873628/pnas.2312676121.sd12.zip (no license), supp:PMC10873628/pnas.2312676121.sd13.zip (no license), supp:PMC10873628/pnas.2312676121.sd14.zip (no license), alessi-lab/curtain (MIT), alessi-lab/curtainptm (MIT), alessi-lab/curtain-web-api (no license), alessi-lab/uniprotparserjs (MIT), alessi-lab/curtain-utils (MIT), alessi-lab/celsusdjango (MIT)

Status: code verified, 4,917 files readable, 5 matches

[30213] doi:10.1093/braincomms/fcae031 [paper, repository]

Tau accumulation and its spatial progression across the Alzheimer's disease spectrum.

Journal: Brain communications

Authors' code: sihnpy.readthedocs.io (no license), villeneuvelab/projects (MIT)

Status: code verified, 43 files readable, 7 matches

[30214] doi:10.1186/s12864-023-09898-x [paper, data]

Single-cell RNA sequencing of mid-to-late stage spider embryos: new insights into spider development.

Journal: BMC genomics

Status: data only, 7 datasets cited

[30215] doi:10.1186/s13059-024-03172-3 [paper, repository]

IDHwt glioblastomas can be stratified by their transcriptional response to standard treatment, with implications for targeted therapy.

Journal: Genome biology

Authors' code: GliomaGenomics/GBM_TF_analysis (no license)

Status: code verified, 48 files readable, 3 matches

[30216] doi:10.1371/journal.pcbi.1011354 [paper, repository]

Attractor neural networks with double well synapses.

Journal: PLoS computational biology

Authors' code: YuFengDuke/double-well-model (no license)

Status: code verified, 42 files readable

[30217] doi:10.1371/journal.pone.0296959 [paper, repository]

Sex- and region-specific cortical and hippocampal whole genome transcriptome profiles from control and APP/PS1 Alzheimer's disease mice.

Journal: PloS one

Authors' code: supp:PMC10849391/pone.0296959.s001.zip (no license)

Status: code verified

[30218] doi:10.1523/eneuro.0076-23.2023 [paper, repository]

Alpha-Band Lateralization and Microsaccades Elicited by Exogenous Cues Do Not Track Attentional Orienting.

Journal: eNeuro

Authors' code: OSF 8t963 (no license)

Status: code verified, 17 files readable, 3 matches

[30219] doi:10.3389/fnagi.2024.1346214 [paper]

Modifiable dementia risk factors and AT(N) biomarkers: findings from the EPAD cohort.

Journal: Frontiers in aging neuroscience

Status: code on request

[30220] doi:10.3389/fncom.2024.1328699 [paper, data]

Random forest analysis of midbrain hypometabolism using [¹⁸F]-FDG PET identifies Parkinson's disease at the subject-level.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[30221] doi:10.3389/fnins.2024.1353131 [paper, data]

Methylone is a rapid-acting neuroplastogen with less off-target activity than MDMA.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[30222] doi:10.3389/fnmol.2024.1347228 [paper, data]

Restoring GABA_<i>B</i> receptor expression in the ventral tegmental area of methamphetamine addicted mice inhibits locomotor sensitization and drug seeking behavior.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[30223] doi:10.3389/fpsyg.2024.1320675 [paper, data]

Neural manifestation of L2 novel concept acquisition from multi-contexts via both episodic memory and semantic memory systems.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[30224] doi:10.3389/frai.2024.1301997 [paper, repository]

A multi-center distributed learning approach for Parkinson's disease classification using the traveling model paradigm.

Journal: Frontiers in artificial intelligence

Authors' code: RaissaSouza/pd-travelling-model (GPL-3.0)

Status: code verified, 6 files readable

[30225] doi:10.7554/elife.86933 [paper, repository]

Transcriptional cartography integrates multiscale biology of the human cortex.

Journal: eLife

Authors' code: kwagstyl/MAGICC (MIT), Zenodo 10563547 (CC-BY-4.0)

Status: code verified, 60 files readable, 13 matches

Tuesday, 6 February 2024 (24 papers, 15 on this page)

[30226] doi:10.1002/jcv2.12220 [paper, repository]

Parental education and income are linked to offspring cortical brain structure and psychopathology at 9-11 years.

Journal: JCPP advances

Authors' code: OSF etsjx (no license), data-archive.nimh.nih.gov/abcd (no license)

Status: code verified, 2 files readable, 3 matches

[30227] doi:10.1007/s00401-023-02679-6 [paper, repository]

Transmembrane protein 97 is a potential synaptic amyloid beta receptor in human Alzheimer's disease.

Journal: Acta neuropathologica

Authors' code: datashare.ed.ac.uk/handle/10283 (no license)

Status: code verified

[30228] doi:10.1016/j.apsb.2024.01.020 [paper, data]

High-throughput discovery of highly selective reversible hMAO-B inhibitors based on at-line nanofractionation.

Journal: Acta pharmaceutica Sinica. B

Status: data only, 1 dataset cited

[30229] doi:10.1016/j.cortex.2024.01.005 [paper, data]

Reduced categorical learning of faces in dyslexia.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Status: data only, 1 dataset cited

[30230] doi:10.1016/j.isci.2024.109128 [paper, repository]

Profiles of visual perceptual learning in feature space.

Journal: iScience

Authors' code: OSF vk2tb (no license)

Status: empty repository

[30231] doi:10.1016/j.isci.2024.109137 [paper]

Dorsal motor vagal neurons can elicit bradycardia and reduce anxiety-like behavior.

Journal: iScience

Status: code on request

[30232] doi:10.1016/j.isci.2024.109150 [paper, repository]

Comparing the performance of beamformer algorithms in estimating orientations of neural sources.

Journal: iScience

Authors' code: Zenodo 10492310 (CC-BY-4.0), maltehoel/beamformer_orientation_estimation_paper_code (no license)

Status: code verified, 14 files readable, 6 matches

[30233] doi:10.1016/j.ncrna.2024.02.006 [paper, repository]

Systematic review and meta-analysis of dysregulated microRNAs derived from liquid biopsies as biomarkers for amyotrophic lateral sclerosis.

Journal: Non-coding RNA research

Authors' code: toshiakiasakura/myforestplot (MIT), Zenodo 8139857 (CC-BY-4.0), Zenodo 8139856 (CC-BY-4.0)

Status: code verified, 37 files readable

[30234] doi:10.1016/j.nicl.2024.103571 [paper, repository]

Longitudinal prognosis of Parkinson's outcomes using causal connectivity.

Journal: NeuroImage. Clinical

Authors' code: DeepLearningForPrecisionHealthLab/ParkinsonsPrognosis (no license)

Status: empty repository, 1 file readable

[30235] doi:10.1016/j.xcrm.2024.101413 [paper, data]

TwinF interface inhibitor FP802 stops loss of motor neurons and mitigates disease progression in a mouse model of ALS.

Journal: Cell reports. Medicine

Status: code on request, 1 dataset cited

[30236] doi:10.1016/j.ymthe.2024.02.004 [paper]

Prenatal delivery of a therapeutic antisense oligonucleotide achieves broad biodistribution in the brain and ameliorates Angelman syndrome phenotype in mice.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: code on request

[30237] doi:10.1038/s41467-024-44845-8 [paper]

Sensory Schwann cells set perceptual thresholds for touch and selectively regulate mechanical nociception.

Journal: Nature communications

Status: code on request

[30238] doi:10.1038/s41467-024-45067-8 [paper, repository]

A clinically applicable connectivity signature for glioblastoma includes the tumor network driver CHI3L1.

Journal: Nature communications

Authors' code: DKFZ-ODCF/AlignmentAndQCWorkflows (MIT), connectivity-glioma.dkfz.de (no license), Zenodo 10481241 (CC-BY-4.0), dirkchoffmann/hai-et-al.-2024-nature_communications (no license)

Status: code verified, 109 files readable, 7 matches

[30239] doi:10.1088/1741-2552/ad1dc3 [paper, repository]

Neural signal data collection and analysis of Percept™ PC BrainSense recordings for thalamic stimulation in epilepsy.

Journal: Journal of neural engineering

Authors' code: sange019/Percept-Starter-Code (CC0-1.0)

Status: code verified, 4 files readable

[30240] doi:10.1117/1.jbo.29.2.025001 [paper, repository]

Simulating photodynamic therapy for the treatment of glioblastoma using Monte Carlo radiative transport.

Journal: Journal of biomedical optics

Authors' code: Loufin101 (no license)

Status: code verified

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