Every paper, by date: page 136

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 136 of 200: 6 February 2024 to 29 January 2024.

Tuesday, 6 February 2024 (24 papers, 9 on this page)

[30241] doi:10.1117/1.nph.11.s1.s11503 [paper, repository]

Photonic neural probe enabled microendoscopes for light-sheet light-field computational fluorescence brain imaging.

Journal: Neurophotonics

Authors' code: Pding2/Light-field-fiber-bundle-imaging (MIT)

Status: code verified, 25 files readable, 1 match

[30242] doi:10.1162/imag_a_00084 [paper, repository]

Identification of rare cortical folding patterns using unsupervised deep learning.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: neurospin-projects/2022_lguillon_rare_folding_detection (MIT)

Status: code verified, 12 files readable, 1 match

[30243] doi:10.1162/imag_a_00088 [paper, repository]

Likelihood-free posterior estimation and uncertainty quantification for diffusion MRI models.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: hazhars/posterior_dMRI (no license)

Status: code verified, 3 files readable

[30244] doi:10.1172/jci170329 [paper, data]

PI3K/mTOR is a therapeutically targetable genetic dependency in diffuse intrinsic pontine glioma.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[30245] doi:10.1186/s12879-024-08992-z [paper, repository]

A novel diagnostic model for tuberculous meningitis using Bayesian latent class analysis.

Journal: BMC infectious diseases

Authors' code: trinhdhk/TBM-LCA (no license), trinhdhk/Shiny.TBMLCA (no license)

Status: code verified, 137 files readable, 17 matches

[30246] doi:10.1371/journal.pbio.3002494 [paper, repository]

Older adults preserve audiovisual integration through enhanced cortical activations, not by recruiting new regions.

Journal: PLoS biology

Authors' code: supp:PMC10871488/pbio.3002494.s004.zip (no license)

Status: code verified, 2 files readable, 2 matches

[30247] doi:10.1371/journal.pone.0293345 [paper, data]

DNA barcoding for the assessment of marine and coastal fish diversity from the Coast of Mozambique.

Journal: PloS one

Status: data only, 1 dataset cited

[30248] doi:10.7554/elife.79352 [paper, repository]

A prefrontal network model operating near steady and oscillatory states links spike desynchronization and synaptic deficits in schizophrenia.

Journal: eLife

Authors' code: amirikian/SCZ-Synaptic-Circuit-Failure-Model (GPL-3.0)

Status: code verified, 18 files readable, 8 matches

[30249] doi:10.7554/elife.87866 [paper, data]

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing.

Journal: eLife

Status: data only, 2 datasets cited

Monday, 5 February 2024 (32 papers)

[30250] doi:10.1007/s00726-023-03375-1 [paper, data]

Investigating metabolic dysregulation in serum of triple transgenic Alzheimer's disease male mice: implications for pathogenesis and potential biomarkers.

Journal: Amino acids

Status: data only, 1 dataset cited

[30251] doi:10.1007/s12015-024-10678-7 [paper]

Effect of Octamer-Binding Transcription Factor 4 Overexpression on the Neural Induction of Human Dental Pulp Stem Cells.

Journal: Stem cell reviews and reports

Status: code on request

[30252] doi:10.1016/j.dcn.2024.101353 [paper, data]

Limitations of two time point data for understanding individual differences in longitudinal modeling - What can difference reveal about change?

Journal: Developmental cognitive neuroscience

Status: data only, 2 datasets cited

[30253] doi:10.1016/j.heliyon.2024.e25494 [paper, repository]

Switching from weak to strong cortical attachment of microtubules accounts for the transition from nuclear centration to spindle elongation in metazoans.

Journal: Heliyon

Authors' code: funalab/MTSim (MIT)

Status: code verified, 135 files readable, 5 matches

[30254] doi:10.1016/j.isci.2024.109111 [paper]

Modeling the precise interaction of glioblastoma with human brain region-specific organoids.

Journal: iScience

Status: code on request

[30255] doi:10.1016/j.isci.2024.109130 [paper, data]

Brain-wide human oscillatory local field potential activity during visual working memory.

Journal: iScience

Status: code on request, 1 dataset cited

[30256] doi:10.1016/j.isci.2024.109136 [paper]

Local mitochondrial replication in the periphery of neurons requires the eEF1A1 protein and thetranslation of nuclear-encoded proteins.

Journal: iScience

Status: code on request

[30257] doi:10.1016/j.isci.2024.109140 [paper, data]

When the heart inhibits the brain: Cardiac phases modulate short-interval intracortical inhibition.

Journal: iScience

Status: code on request, 2 datasets cited

[30258] doi:10.1016/j.omtm.2024.101207 [paper]

Extracellular vesicles ameliorates sleep deprivation induced anxiety-like behavior and cognitive impairment in mice.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[30259] doi:10.1038/s41380-024-02430-x [paper, repository]

DNA methylation patterns of FKBP5 regulatory regions in brain and blood of humanized mice and humans.

Journal: Molecular psychiatry

Authors' code: github.molgen.mpg.de/mpip/fkbp5_dnam_hamtbs_humanized_mouse_humans (no license)

Status: code verified

[30260] doi:10.1038/s41386-024-01807-4 [paper, data]

Identifying novel proteins for suicide attempt by integrating proteomes from brain and blood with genome-wide association data.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 3 datasets cited

[30261] doi:10.1038/s41398-024-02736-y [paper, data]

Targeting the prefrontal-supplementary motor network in obsessive-compulsive disorder with intensified electrical stimulation in two dosages: a randomized, controlled trial.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[30262] doi:10.1038/s41564-023-01564-y [paper, repository]

The gut virome is associated with stress-induced changes in behaviour and immune responses in mice.

Journal: Nature microbiology

Authors' code: qiyunzhu/woltka (BSD-3-Clause), alexcritschristoph/VRCA (GPL-2.0), thomazbastiaanssen/Tjazi (GPL-3.0), Zenodo 10460215 (CC-BY-4.0), Zenodo 10144096 (CC-BY-4.0)

Status: code verified, 73 files readable, 8 matches

[30263] doi:10.1038/s41598-024-52323-w [paper, repository]

Multimodal machine learning for modeling infant head circumference, mothers' milk composition, and their shared environment.

Journal: Scientific reports

Authors' code: nalab.stanford.edu/infant-growth-multiomics (no license)

Status: code verified

[30264] doi:10.1038/s41598-024-52551-0 [paper, repository]

Minimizing artifact-induced false-alarms for seizure detection in wearable EEG devices with gradient-boosted tree classifiers.

Journal: Scientific reports

Authors' code: pulp-bio/Artifact-Seizure (Apache-2.0)

Status: code verified, 55 files readable, 2 matches

[30265] doi:10.1038/s41598-024-53075-3 [paper, repository]

Waveform-based classification of dentate spikes.

Journal: Scientific reports

Authors' code: tortlab/dentate-spikes (no license), Zenodo 10080866 (CC-BY-4.0)

Status: code verified, 12 files readable, 15 matches

[30266] doi:10.1038/s41598-024-53430-4 [paper, data]

Acute gastrointestinal permeability after traumatic brain injury in mice precedes a bloom in Akkermansia muciniphila supported by intestinal hypoxia.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30267] doi:10.1038/s41598-024-53468-4 [paper]

Quantifying the effects of practicing a semantic task according to subclinical schizotypy.

Journal: Scientific reports

Status: code on request

[30268] doi:10.1038/s44318-024-00030-7 [paper, data]

The DDHD2-STXBP1 interaction mediates long-term memory via generation of saturated free fatty acids.

Journal: The EMBO journal

Status: code on request, 1 dataset cited

[30269] doi:10.1038/s44319-024-00073-1 [paper, data]

mRNA nuclear retention reduces AMPAR expression and promotes autistic behavior in UBE3A-overexpressing mice.

Journal: EMBO reports

Status: data only, 1 dataset cited

[30270] doi:10.1073/pnas.2305035121 [paper, repository]

Brain energy metabolism is optimized to minimize the cost of enzyme synthesis and transport.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10206796 (CC-BY-4.0), SysBioChalmers/BrainMetabolismModeling (MIT)

Status: code verified, 42 files readable, 3 matches

[30271] doi:10.1073/pnas.2306993121 [paper, data]

Puromycin reveals a distinct conformation of neuronal ribosomes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 5 datasets cited

[30272] doi:10.1162/imag_a_00079 [paper, repository]

Investigating the impact of motion in the scanner on brain age predictions.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: NIST-MNI/nist_mni_pipelines (no license)

Status: code verified, 228 files readable, 3 matches

[30273] doi:10.1162/imag_a_00085 [paper, repository]

Accelerated diffusion-weighted magnetic resonance imaging at 7 T: Joint reconstruction for shift-encoded navigator-based interleaved echo planar imaging (JETS-NAViEPI).

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: pehses/twixtools (MIT), ZhengguoTan/sigpy (BSD-3-Clause), ZhengguoTan/NAViEPI (MIT), bit.ly/2qgbg9u (no license), daiep/JULEP (no license), ZZgroupSJTU/PMCmsDTI (no license)

Status: code verified, 307 files readable, 6 matches

[30274] doi:10.1162/imag_a_00089 [paper, repository]

Combining multimodal connectivity information improves modelling of pathology spread in Alzheimer's disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ethompson93/multimodal_ndm (no license)

Status: code verified, 13 files readable, 8 matches

[30275] doi:10.1186/s12868-024-00844-5 [paper, repository]

Modulation of long-term potentiation following microdoses of LSD captured by thalamo-cortical modelling in a randomised, controlled trial.

Journal: BMC neuroscience

Authors' code: alexandershaw4/LTP_code (no license)

Status: code verified, 128 files readable, 4 matches

[30276] doi:10.1186/s12915-024-01822-3 [paper, repository]

The functional role of spatial anisotropies in ensemble perception.

Journal: BMC biology

Authors' code: Zenodo 10406375 (CC-BY-4.0)

Status: empty repository

[30277] doi:10.1292/jvms.23-0516 [paper, data]

No-observed-adverse-effect-level (NOAEL) clothianidin, a neonicotinoid pesticide, impairs hippocampal memory and motor learning associated with alteration of gene expression in cerebellum.

Journal: The Journal of veterinary medical science

Status: data only, 1 dataset cited

[30278] doi:10.1371/journal.pbio.3002489 [paper, repository]

Relation of connectome topology to brain volume across 103 mammalian species.

Journal: PLoS biology

Authors' code: Zenodo 10372945 (CC-BY-4.0), mariagraziap/network_modularity_mammalian_connectome (BSD-3-Clause)

Status: code verified, 30 files readable, 5 matches

[30279] doi:10.1371/journal.pcbi.1011852 [paper, repository]

Trained recurrent neural networks develop phase-locked limit cycles in a working memory task.

Journal: PLoS computational biology

Authors' code: mackelab/phase-limit-cycle-RNNs (Apache-2.0)

Status: code verified, 29 files readable, 3 matches

[30280] doi:10.3389/fnagi.2024.1337365 [paper]

Nigral transcriptomic profiles in Engrailed-1 hemizygous mouse models of Parkinson's disease reveal upregulation of oxidative phosphorylation-related genes associated with delayed dopaminergic neurodegeneration.

Journal: Frontiers in aging neuroscience

Status: data only

[30281] doi:10.3389/fninf.2024.1338886 [paper, repository]

Improving the detection of sleep slow oscillations in electroencephalographic data.

Journal: Frontiers in neuroinformatics

Authors' code: caglorithm/sleepy (GPL-3.0), Zenodo 7115257 (other-open)

Status: code verified, 197 files readable, 6 matches

Sunday, 4 February 2024 (2 papers)

[30282] doi:10.1038/s41598-024-51857-3 [paper, repository]

Combining OPM and lesion mapping data for epilepsy surgery planning: a simulation study.

Journal: Scientific reports

Authors' code: stephaniemellor/opm_meld_simulations (GPL-3.0)

Status: code verified, 12 files readable, 5 matches

[30283] doi:10.1038/s41598-024-53518-x [paper]

Parent-child couples display shared neural fingerprints while listening to stories.

Journal: Scientific reports

Status: code on request

Saturday, 3 February 2024 (14 papers)

[30284] doi:10.1007/s00401-023-02671-0 [paper, data]

Cryptic exon inclusion is a molecular signature of LATE-NC in aging brains.

Journal: Acta neuropathologica

Status: data only, 2 datasets cited

[30285] doi:10.1007/s11060-024-04577-7 [paper, repository]

The relationship between pathological brain activity and functional network connectivity in glioma patients.

Journal: Journal of neuro-oncology

Authors' code: multinetlab-amsterdam/projects (MIT)

Status: code verified, 83 files readable, 7 matches

[30286] doi:10.1016/j.ibneur.2024.01.007 [paper, data]

Hub genes, a diagnostic model, and immune infiltration based on ferroptosis-linked genes in schizophrenia.

Journal: IBRO neuroscience reports

Status: data only, 1 dataset cited

[30287] doi:10.1016/j.isci.2024.109106 [paper]

<i>Drosophila</i> noktochor regulates night sleep via a local mushroom body circuit.

Journal: iScience

Status: code on request

[30288] doi:10.1016/j.lana.2024.100688 [paper, repository]

Prevalence and determinants of post-acute sequelae after SARS-CoV-2 infection (Long COVID) among adults in Mexico during 2022: a retrospective analysis of nationally representative data.

Journal: Lancet regional health. Americas

Authors' code: oyaxbell/pasc_ensanut (no license)

Status: code verified, 2 files readable, 10 matches

[30289] doi:10.1016/j.ymthe.2024.01.033 [paper]

Tau reduction with artificial microRNAs modulates neuronal physiology and improves tauopathy phenotypes in mice.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: code on request

[30290] doi:10.1038/s41467-024-45303-1 [paper]

The liver and muscle secreted HFE2-protein maintains central nervous system blood vessel integrity.

Journal: Nature communications

Status: code on request

[30291] doi:10.1038/s41467-024-45376-y [paper, repository]

A prefrontal-thalamic circuit encodes social information for social recognition.

Journal: Nature communications

Authors' code: YangZhanLab/prefrontal-thalamic-social-recognition (Apache-2.0)

Status: code verified, 4 files readable

[30292] doi:10.1038/s41467-024-45436-3 [paper, repository]

Secretin-dependent signals in the ventromedial hypothalamus regulate energy metabolism and bone homeostasis in mice.

Journal: Nature communications

Authors' code: nedchen2/HKFI-Secretin-Signaling (no license), Zenodo 10476920 (CC-BY-4.0)

Status: code verified, 6 files readable, 1 match

[30293] doi:10.1186/s12872-024-03739-9 [paper, data]

Exploration of neuron heterogeneity in human heart failure with dilated cardiomyopathy through single-cell RNA sequencing analysis.

Journal: BMC cardiovascular disorders

Status: data only, 1 dataset cited

[30294] doi:10.1186/s13063-024-07938-9 [paper]

A multicenter double-blind randomized crossover study comparing the impact of dorsal subthalamic nucleus deep brain stimulation versus standard care on apathy in Parkinson's disease: a study protocol.

Journal: Trials

Status: code on request

[30295] doi:10.3390/ani14030509 [paper, repository]

High-Frequency Local Field Potential Oscillations for Pigeons in Effective Turning.

Journal: Animals : an open access journal from MDPI

Authors' code: open-ephys/analysistools (no license)

Status: dead link

[30296] doi:10.3390/biomedicines12020357 [paper, data]

Beyond the Brain: Perinatal Exposure of Rats to Serotonin Enhancers Induces Long-Term Changes in the Jejunum and Liver.

Journal: Biomedicines

Status: data only, 1 dataset cited

[30297] doi:10.3390/jcm13030893 [paper, repository]

The Relationship between Sleep Parameters Measured by Polysomnography and Selected Neurotrophic Factors.

Journal: Journal of clinical medicine

Authors' code: AdamWysokinski/research-data (CC-BY-NC-4.0)

Status: code verified, 3 files readable, 2 matches

Friday, 2 February 2024 (25 papers)

[30298] doi:10.1016/j.cell.2024.01.012 [paper, repository]

Microglia maintain structural integrity during fetal brain morphogenesis.

Journal: Cell

Authors' code: satijalab/sctransform (GPL-3.0)

Status: code verified, 32 files readable, 3 matches

[30299] doi:10.1016/j.celrep.2024.113722 [paper]

TRPM2 enhances ischemic excitotoxicity by associating with PKCγ.

Journal: Cell reports

Status: code on request

[30300] doi:10.1016/j.heliyon.2024.e25468 [paper, data]

Performance of convolutional neural networks for the classification of brain tumors using magnetic resonance imaging.

Journal: Heliyon

Status: data only, 2 datasets cited

[30301] doi:10.1016/j.isci.2024.109092 [paper]

Alpha oscillations reflect similar mapping mechanisms for localizing touch on hands and tools.

Journal: iScience

Status: code on request

[30302] doi:10.1016/j.isci.2024.109093 [paper, data]

A contactless monitoring system for accurately predicting energy expenditure during treadmill walking based on an ensemble neural network.

Journal: iScience

Status: code on request, 1 dataset cited

[30303] doi:10.1016/j.jbc.2024.105717 [paper, repository]

Recovery from desensitization in GluA2 AMPA receptors is affected by a single mutation in the N-terminal domain interface.

Journal: The Journal of biological chemistry

Authors' code: andreashlarsen/Larsen2024-GluA2 (no license)

Status: code verified, 22 files readable, 5 matches

[30304] doi:10.1016/j.omtn.2024.102132 [paper]

mitoTALEN reduces the mutant mtDNA load in neurons.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[30305] doi:10.1016/j.omtn.2024.102136 [paper, data]

Quantitative proteomics of the miR-301a/SOCS3/STAT3 axis reveals underlying autism and anxiety-like behavior.

Journal: Molecular therapy. Nucleic acids

Status: data only, 1 dataset cited

[30306] doi:10.1038/s41398-024-02782-6 [paper]

Prenatal exposure to maternal disadvantage-related inflammatory biomarkers: associations with neonatal white matter microstructure.

Journal: Translational psychiatry

Status: code on request

[30307] doi:10.1038/s41398-024-02795-1 [paper, repository]

Trauma-related intrusive memories and anterior hippocampus structural covariance: an ecological momentary assessment study in posttraumatic stress disorder.

Journal: Translational psychiatry

Authors' code: OSF kavpc (no license)

Status: code verified, 1 file readable

[30308] doi:10.1038/s41467-024-45065-w [paper, repository]

Cortical depth profiles in primary visual cortex for illusory and imaginary experiences.

Journal: Nature communications

Authors' code: joebee/7t-imagery-illusory-in-v1-layers (no license)

Status: code verified, 13 files readable, 6 matches

[30309] doi:10.1038/s41598-024-53284-w [paper, repository]

Machine learning enables non-Gaussian investigation of changes to peripheral nerves related to electrical stimulation.

Journal: Scientific reports

Authors' code: LazziLab/NeMeAn (MIT)

Status: code verified, 5 files readable, 8 matches

[30310] doi:10.1126/sciadv.adi0645 [paper, repository]

Dissociable components of attention exhibit distinct neuronal signatures in primate visual cortex.

Journal: Science advances

Authors' code: figshare 23897040 (CC-BY-4.0)

Status: code verified, 72 files readable, 7 matches

[30311] doi:10.1126/sciadv.adi1737 [paper, data]

Notch3 directs differentiation of brain mural cells from human pluripotent stem cell-derived neural crest.

Journal: Science advances

Status: data only, 2 datasets cited

[30312] doi:10.1162/imag_a_00071 [paper, repository]

Rescuing missing data in connectome-based predictive modeling.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: YaleMRRC/CPM (no license)

Status: code verified, 41 files readable, 6 matches

[30313] doi:10.1162/imag_a_00076 [paper]

Gray matter correlates of attention-deficit hyperactivity disorder in boys versus girls with sensory processing dysfunction.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[30314] doi:10.1162/imag_a_00077 [paper, repository]

MEBRAINS 1.0: A new population-based macaque atlas.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: HumanBrainED/NHP-BrainExtraction (AGPL-3.0), gin.g-node.org/chrisklink/rhemap (no license)

Status: code verified, 12 files readable, 4 matches

[30315] doi:10.1162/imag_a_00081 [paper, repository]

Methods for decoding cortical gradients of functional connectivity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: satra/mapalign (Apache-2.0), netneurolab/netneurotools (BSD-3-Clause), NBCLab/gradient-decoding (Apache-2.0), JulioAPeraza/gradec (Apache-2.0), Zenodo 8161766 (Apache-2.0), Zenodo 6603673 (MIT), neurostuff/nimare (MIT)

Status: code verified, 448 files readable, 20 matches

[30316] doi:10.1162/imag_a_00082 [paper, repository]

The GLM-spectrum: A multilevel framework for spectrum analysis with covariate and confound modelling.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OHBA-analysis/Quinn2022_GLMSpectrum (MIT), Zenodo 6875060 (BSD-3-Clause)

Status: code verified, 91 files readable, 3 matches

[30317] doi:10.1162/imag_a_00083 [paper, repository]

Expectation Modifies the Representational Fidelity of Complex Visual Objects.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF cqyp2 (no license)

Status: code verified, 23 files readable, 1 match

[30318] doi:10.1186/s40478-024-01735-w [paper, data]

Brain injury drives optic glioma formation through neuron-glia signaling.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[30319] doi:10.3389/fninf.2024.1303380 [paper, data]

Domain adaptation for EEG-based, cross-subject epileptic seizure prediction.

Journal: Frontiers in neuroinformatics

Status: data only, 2 datasets cited

[30320] doi:10.3389/fninf.2024.1303993 [paper, repository]

Discovering optimal features for neuron-type identification from extracellular recordings.

Journal: Frontiers in neuroinformatics

Authors' code: vrhaynes/Haynes2023_EAPs (no license)

Status: code verified, 241 files readable, 12 matches

[30321] doi:10.3390/ijms25031827 [paper, data]

A Comparative Biochemical and Pathological Evaluation of Brain Samples from Knock-In Murine Models of Gaucher Disease.

Journal: International journal of molecular sciences

Status: data only, 5 datasets cited

[30322] doi:10.3390/jcm13030874 [paper, repository]

Evolution of Severe Closed Head Injury: Assessing Ventricular Volume and Behavioral Measures at 30 and 90 Days Post-Injury.

Journal: Journal of clinical medicine

Authors' code: OSF ep38x (no license)

Status: code verified, 1 file readable

Thursday, 1 February 2024 (71 papers)

[30323] doi:10.1002/alz.13714 [paper, data]

Altered cerebellar and caudate gray-matter volumes and structural covariance networks preceding dual cognitive and mobility impairments in older people.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[30324] doi:10.1002/brb3.3434 [paper, repository]

Peak occipital alpha frequency mediates the relationship between sporting expertise and multiple object tracking performance.

Journal: Brain and behavior

Authors' code: OSF 9ch2u (no license)

Status: code verified, 2 files readable

[30325] doi:10.1002/hbm.26565 [paper, repository]

Estimating cortical thickness trajectories in children across different scanners using transfer learning from normative models.

Journal: Human brain mapping

Authors' code: amarquand/PCNtoolkit (GPL-3.0)

Status: code verified, 126 files readable, 2 matches

[30326] doi:10.1002/hbm.26570 [paper, repository]

Diffusion MRI head motion correction methods are highly accurate but impacted by denoising and sampling scheme.

Journal: Human brain mapping

Authors' code: OSF 38vce (no license)

Status: code verified

[30327] doi:10.1002/hbm.26574 [paper, repository]

Adolescent to young adult longitudinal development of subcortical volumes in two European sites with four waves.

Journal: Human brain mapping

Authors' code: OSF 5tfh4 (no license)

Status: code found, still to be checked

[30328] doi:10.1002/hbm.26575 [paper, repository]

How brain structure-function decoupling supports individual cognition and its molecular mechanism.

Journal: Human brain mapping

Authors' code: gpreti/GSP_StructuralDecouplingIndex (Apache-2.0), dongxx25/structure-function-decoupling (no license)

Status: code verified, 56 files readable, 3 matches

[30329] doi:10.1002/hbm.26576 [paper]

Risk factors for internalizing symptoms: The influence of empathy, theory of mind, and negative thinking processes.

Journal: Human brain mapping

Status: code on request

[30330] doi:10.1002/hbm.26578 [paper, repository]

Fibre orientation atlas guided rapid segmentation of white matter tracts.

Journal: Human brain mapping

Authors' code: fionaEyoung/tractfinder (no license), fionaEyoung/pipelines (no license)

Status: code verified, 14 files readable, 9 matches

[30331] doi:10.1002/hbm.26579 [paper, repository]

FEMA: Fast and efficient mixed-effects algorithm for large sample whole-brain imaging data.

Journal: Human brain mapping

Authors' code: cmig-research-group/cmig_tools (other), parekhpravesh/FEMA (no license)

Status: code verified, 305 files readable, 7 matches

[30332] doi:10.1002/hbm.26585 [paper, data]

The date/delay effect in intertemporal choice: A combined fMRI and eye-tracking study.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[30333] doi:10.1002/hbm.26587 [paper, repository]

Cortical timescales and the modular organization of structural and functional brain networks.

Journal: Human brain mapping

Authors' code: danlurie/PyPALM (BSD-3-Clause), OSF ba9nh (no license), OSF t42pd (no license)

Status: code verified, 32 files readable, 5 matches

[30334] doi:10.1002/hbm.26588 [paper, repository]

Molecular signatures of attention networks.

Journal: Human brain mapping

Authors' code: frantisekvasa/rotate_parcellation (MIT), schinhan/ant_genes (no license), rmarkello/abagen (BSD-3-Clause)

Status: code verified, 88 files readable, 8 matches

[30335] doi:10.1002/hbm.26590 [paper, repository]

Working memory signals in early visual cortex are present in weak and strong imagers.

Journal: Human brain mapping

Authors' code: simonweber91/WM_VI_EVC (GPL-3.0), JoramSoch/RDK_vMMM (GPL-3.0)

Status: code verified, 154 files readable, 30 matches

[30336] doi:10.1002/hbm.26592 [paper, repository]

Impact of brain parcellation on prediction performance in models of cognition and demographics.

Journal: Human brain mapping

Authors' code: MCLit/atlas (no license)

Status: code verified, 1 file readable, 1 match

[30337] doi:10.1002/hbm.26593 [paper, data]

Agreeableness modulates mental state decoding: Electrophysiological evidence.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[30338] doi:10.1002/hbm.26595 [paper, repository]

Deep learning-based BMI inference from structural brain MRI reflects brain alterations following lifestyle intervention.

Journal: Human brain mapping

Authors' code: ofekfink/BMI_Prediction (no license)

Status: dead link

[30339] doi:10.1002/hbm.26600 [paper, repository]

Spinal fMRI demonstrates segmental organisation of functionally connected networks in the cervical spinal cord: A test-retest reliability study.

Journal: Human brain mapping

Authors' code: OSF fjasd (no license), OSF u8rbq (no license)

Status: code verified, 59 files readable, 10 matches

[30340] doi:10.1002/hbm.26602 [paper, repository]

Spatiotemporal signal space separation for regions of interest: Application for extracting neuromagnetic responses evoked by deep brain stimulation.

Journal: Human brain mapping

Authors' code: AshOswal/ROI-tSSS (GPL-3.0)

Status: code verified, 55 files readable, 2 matches

[30341] doi:10.1002/hbm.26603 [paper]

Semantic representations in inferior frontal and lateral temporal cortex during picture naming, reading, and repetition.

Journal: Human brain mapping

Status: code on request

[30342] doi:10.1002/hbm.26605 [paper, repository]

Overlapping representations of observed actions and action-related features.

Journal: Human brain mapping

Authors' code: OSF efn3w (no license), OSF m9ykh (no license)

Status: code verified, 60 files readable, 6 matches

[30343] doi:10.1002/hbm.26607 [paper, repository]

Individual word representations dissociate from linguistic context along a cortical unimodal to heteromodal gradient.

Journal: Human brain mapping

Authors' code: data.donders.ru.nl/collections/di (no license), OSF 5fxbd (no license)

Status: code verified, 33 files readable, 10 matches

[30344] doi:10.1002/hbm.26610 [paper, repository]

Multiplex dynamic networks in the newborn brain disclose latent links with neurobehavioral phenotypes.

Journal: Human brain mapping

Authors' code: Al-Sad (no license)

Status: code verified

[30345] doi:10.1002/hbm.26611 [paper, data]

The impact of social hierarchies on neural response to feedback evaluations after advice giving.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[30346] doi:10.1002/hbm.26616 [paper, data]

Parafoveal vision reveals qualitative differences between fusiform face area and parahippocampal place area.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[30347] doi:10.1002/hbm.26617 [paper, repository]

Phase-encoded fMRI tracks down brainstorms of natural language processing with subsecond precision.

Journal: Human brain mapping

Authors' code: pages.ucsd.edu/~msereno/csurf (no license), mri.sdsu.edu/sereno/csurf (no license)

Status: code verified

[30348] doi:10.1002/hbm.26619 [paper, data]

Wearable functional near-infrared spectroscopy for measuring dissociable activation dynamics of prefrontal cortex subregions during working memory.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[30349] doi:10.1002/hbm.26626 [paper, repository]

DCP: A pipeline toolbox for diffusion connectome.

Journal: Human brain mapping

Authors' code: sandywang/GRETNA (GPL-3.0)

Status: code verified, 453 files readable, 2 matches

[30350] doi:10.1002/hbm.26628 [paper, data]

Mapping the functional and structural connectivity of the scene network.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[30351] doi:10.1002/hbm.26631 [paper, repository]

Testing the sensitivity of diagnosis-derived patterns in functional brain networks to symptom burden in a Norwegian youth sample.

Journal: Human brain mapping

Authors' code: OSF cdjw4 (no license)

Status: code found, still to be checked

[30352] doi:10.1016/j.ajhg.2023.12.018 [paper, repository]

Cell-type deconvolution of bulk-blood RNA-seq reveals biological insights into neuropsychiatric disorders.

Journal: American journal of human genetics

Authors' code: broadinstitute/gtex-pipeline (BSD-3-Clause), eqtl-catalogue/eqtl-catalogue-resources (no license)

Status: code verified, 79 files readable, 2 matches

[30353] doi:10.1016/j.crmeth.2024.100714 [paper]

An expanded neurogenetic toolkit to decode olfaction in the African malaria mosquito Anopheles gambiae.

Journal: Cell reports methods

Status: code on request

[30354] doi:10.1016/j.dib.2024.110142 [paper, repository]

EEG signals from tinnitus sufferers at identifying their sound tinnitus.

Journal: Data in brief

Authors' code: AlmaSTT/ChaTinnitusEEG (no license)

Status: code verified, 2 files readable, 1 match

[30355] doi:10.1016/j.isci.2024.108967 [paper, data]

Small effects of electric field on motor cortical excitability following anodal tDCS.

Journal: iScience

Status: code on request, 1 dataset cited

[30356] doi:10.1016/j.isci.2024.109004 [paper, repository]

A self-supervised learning approach for registration agnostic imaging models with 3D brain CTA.

Journal: iScience

Authors' code: google-research/vision_transformer (Apache-2.0), lgiancaUTH/registration_agnostic_ml_cta (no license)

Status: code verified, 35 files readable, 5 matches

[30357] doi:10.1016/j.isci.2024.109067 [paper]

An orexin-receptor-2-mediated heart-brain axis in cardiac pain.

Journal: iScience

Status: code on request

[30358] doi:10.1016/j.stemcr.2024.01.001 [paper]

The LRRK2 kinase substrates RAB8a and RAB10 contribute complementary but distinct disease-relevant phenotypes in human neurons.

Journal: Stem cell reports

Status: code on request

[30359] doi:10.1038/s41467-023-44579-z [paper, data]

Neuronal DSCAM regulates the peri-synaptic localization of GLAST in Bergmann glia for functional synapse formation.

Journal: Nature communications

Status: data only, 1 dataset cited

[30360] doi:10.1038/s41467-024-45098-1 [paper, repository]

Environment geometry alters subiculum boundary vector cell receptive fields in adulthood and early development.

Journal: Nature communications

Authors' code: WillsCacucciLab/BVCDevPublic (GPL-3.0)

Status: code verified, 20 files readable, 15 matches

[30361] doi:10.1038/s41467-024-45282-3 [paper, repository]

Brain asymmetries from mid- to late life and hemispheric brain age.

Journal: Nature communications

Authors' code: ekaden/smt (BSD-2-Clause), reisert/baydiff (BSD-2-Clause), Zenodo 10423745 (CC-BY-4.0), maxkorbmacher/hemispheric_brain_age (no license)

Status: code verified, 92 files readable, 15 matches

[30362] doi:10.1038/s41597-024-02931-y [paper, repository]

An fMRI Dataset on Social Reward Processing and Decision Making in Younger and Older Adults.

Journal: Scientific data

Authors' code: DVS-Lab/srndna-datapaper (no license), Zenodo 10456520 (CC-BY-4.0)

Status: code verified, 90 files readable, 19 matches

[30363] doi:10.1038/s41598-024-52836-4 [paper]

Visual outcomes and their association with grey and white matter microstructure in adults born preterm with very low birth weight.

Journal: Scientific reports

Status: code on request

[30364] doi:10.1038/s42003-024-05819-0 [paper, repository]

Macroscale intrinsic dynamics are associated with microcircuit function in focal and generalized epilepsies.

Journal: Communications biology

Authors' code: SiqiYang47/Multi-scale-brain-function (no license), thomasyeolab/cbig (MIT)

Status: code verified, 2,006 files readable, 2 matches

[30365] doi:10.1093/bioinformatics/btae048 [paper, data]

DIRECTEUR: transcriptome-based prediction of small molecules that replace transcription factors for direct cell conversion.

Journal: Bioinformatics (Oxford, England)

Status: data only, 1 dataset cited

[30366] doi:10.1093/bioinformatics/btae070 [paper, repository]

Pycallingcards: an integrated environment for visualizing, analyzing, and interpreting Calling Cards data.

Journal: Bioinformatics (Oxford, England)

Authors' code: The-Mitra-Lab/pycallingcards (BSD-3-Clause)

Status: code verified, 41 files readable, 8 matches

[30367] doi:10.1093/brain/awad298 [paper, repository]

MerTK is a mediator of alpha-synuclein fibril uptake by human microglia.

Journal: Brain : a journal of neurology

Authors' code: Zenodo 6430401 (CC-BY-4.0), Zenodo 6524616 (CC-BY-4.0)

Status: empty repository

[30368] doi:10.1093/brain/awad329 [paper, data]

Widespread alternative splicing dysregulation occurs presymptomatically in CAG expansion spinocerebellar ataxias.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[30369] doi:10.1093/brain/awad358 [paper, data]

Microglia sense astrocyte dysfunction and prevent disease progression in an Alexander disease model.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[30370] doi:10.1093/brain/awad387 [paper]

Anti-seizure gene therapy for focal cortical dysplasia.

Journal: Brain : a journal of neurology

Status: code on request

[30371] doi:10.1093/brain/awad388 [paper, data]

Nigrostriatal tau pathology in parkinsonism and Parkinson's disease.

Journal: Brain : a journal of neurology

Status: data only, 2 datasets cited

[30372] doi:10.1093/jnen/nlad102 [paper, data]

YTHDF2-regulated matrilin-3 mitigates post-reperfusion hemorrhagic transformation in ischemic stroke via the PI3K/AKT pathway.

Journal: Journal of neuropathology and experimental neurology

Status: data only, 1 dataset cited

[30373] doi:10.1093/scan/nsae003 [paper, repository]

How self-disclosure of negative experiences shapes prosociality?

Journal: Social cognitive and affective neuroscience

Authors' code: OSF hmpe9 (no license)

Status: code verified, 3 files readable, 1 match

[30374] doi:10.1093/scan/nsae004 [paper, repository]

Positive affect disrupts neurodegeneration effects on cognitive training plasticity in older adults.

Journal: Social cognitive and affective neuroscience

Authors' code: adamgeorgeturnbull/BEEM (no license), mmantho/projects (no license)

Status: code verified, 12 files readable, 1 match

[30375] doi:10.1093/scan/nsae008 [paper, repository]

Developmental changes in brain function linked with addiction-like social media use two years later.

Journal: Social cognitive and affective neuroscience

Authors' code: flanneryg3/asmu (no license), identifiers.org/neurovault.collection:14537 (no license)

Status: code verified

[30376] doi:10.1093/scan/nsae012 [paper, repository]

Combined effects of neuroticism and negative emotional context on spontaneous EEG dynamics.

Journal: Social cognitive and affective neuroscience

Authors' code: DeoMiche/NeuroStates (no license)

Status: code verified, 5 files readable

[30377] doi:10.1093/scan/nsae013 [paper, data]

Zygomaticus activation through facial neuromuscular electrical stimulation (fNMES) induces happiness perception in ambiguous facial expressions and affects neural correlates of face processing.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[30378] doi:10.1093/sleep/zsad274 [paper, data]

Comprehensive assessment of sleep duration, insomnia, and brain structure within the UK Biobank cohort.

Journal: Sleep

Status: data only, 1 dataset cited

[30379] doi:10.1097/md.0000000000035828 [paper, repository]

Identification of a novel glioblastoma multiforme molecular subtype with poor prognosis and high immune infiltration based on oxidative stress-related genes.

Journal: Medicine

Authors' code: supp:PMC10869097/medi-103-e35828-s002.r (no license)

Status: code verified, 1 file readable, 5 matches

[30380] doi:10.1097/md.0000000000036837 [paper, data]

The mechanism of Zhenzhu Pills treating intracerebral hemorrhage secondary injury based on network pharmacology and molecular docking.

Journal: Medicine

Status: data only, 1 dataset cited

[30381] doi:10.1111/acel.14077 [paper, data]

The SATB1-MIR22-GBA axis mediates glucocerebroside accumulation inducing a cellular senescence-like phenotype in dopaminergic neurons.

Journal: Aging cell

Status: data only, 2 datasets cited

[30382] doi:10.1111/adb.13381 [paper, repository]

Cortical and subcortical microstructure integrity changes after repetitive transcranial magnetic stimulation therapy in cocaine use disorder and relates to clinical outcomes.

Journal: Addiction biology

Authors' code: jalilrt.github.io/noddi-changes-by_rtms-in_cud (no license)

Status: code verified

[30383] doi:10.1111/cns.14557 [paper]

Systems genetics analysis reveals the common genetic basis for pain sensitivity and cognitive function.

Journal: CNS neuroscience & therapeutics

Status: data only

[30384] doi:10.1111/cns.14616 [paper, repository]

Neurite orientation dispersion and density imaging quantifies microstructural impairment in the thalamus and its connectivity in amyotrophic lateral sclerosis.

Journal: CNS neuroscience & therapeutics

Authors' code: pnlbwh/pnlNipype (other)

Status: code verified, 28 files readable, 3 matches

[30385] doi:10.1162/imag_a_00068 [paper, repository]

Violations of physical and psychological expectations in the human adult brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF sa7jy (no license)

Status: empty repository, 2 files readable

[30386] doi:10.1186/s12974-024-03027-5 [paper]

Herpes simplex virus infection induces necroptosis of neurons and astrocytes in human fetal organotypic brain slice cultures.

Journal: Journal of neuroinflammation

Status: code on request

[30387] doi:10.1242/dev.202504 [paper, repository]

Seven-up acts in neuroblasts to specify adult central complex neuron identity and initiate neuroblast decommissioning.

Journal: Development (Cambridge, England)

Authors' code: nrdDrosophila/Seven-up-specifies-neuron-identity (no license)

Status: code verified, 2 files readable, 2 matches

[30388] doi:10.12998/wjcc.v12.i6.1063 [paper]

Correlative factors of poor prognosis and abnormal cellular immune function in patients with Alzheimer's disease.

Journal: World journal of clinical cases

Status: code on request

[30389] doi:10.1371/journal.pone.0293920 [paper, repository]

No influence of emotional expression on size underestimation of upright faces.

Journal: PloS one

Authors' code: OSF qf96e (no license)

Status: code verified, 1 file readable

[30390] doi:10.3389/fnhum.2024.1320457 [paper, data]

A comprehensive dataset for home appliance control using ERP-based BCIs with the application of inter-subject transfer learning.

Journal: Frontiers in human neuroscience

Status: data only, 6 datasets cited

[30391] doi:10.3390/cancers16030633 [paper, data]

Identification of Hypoxia Prognostic Signature in Glioblastoma Multiforme Based on Bulk and Single-Cell RNA-Seq.

Journal: Cancers

Status: data only, 1 dataset cited

[30392] doi:10.3390/gels10020116 [paper, repository]

Preparation and Mechano-Functional Characterization of PEGylated Fibrin Hydrogels: Impact of Thrombin Concentration.

Journal: Gels (Basel, Switzerland)

Authors' code: Zenodo 1119026 (MIT)

Status: code verified, 949 files readable, 1 match

[30393] doi:10.7554/elife.86737 [paper, repository]

Chemo- and optogenetic activation of hypothalamic <i>Foxb1</i>-expressing neurons and their terminal endings in the rostral-dorsolateral PAG leads to tachypnea, bradycardia, and immobility.

Journal: eLife

Authors' code: doi:10.5061/dryad.rv15dv4fn (no license), rbcola/parvafox-elife-2024 (MIT)

Status: code verified, 12 files readable, 14 matches

Wednesday, 31 January 2024 (24 papers)

[30394] doi:10.1007/s00429-023-02751-7 [paper, repository]

Local gradient analysis of human brain function using the Vogt-Bailey Index.

Journal: Brain structure & function

Authors' code: Zenodo 8246344 (cc-by-nc-sa-3.0), vbindex/py_vb_toolbox (GPL-3.0), notebookarchive.org/2023-05-4m1mlah (no license)

Status: code verified, 9 files readable, 2 matches

[30395] doi:10.1038/s41467-024-44801-6 [paper, repository]

Emergence of syntax and word prediction in an artificial neural circuit of the cerebellum.

Journal: Nature communications

Authors' code: cANN-NLP/NLP_codes (no license), Zenodo 10257296 (CC-BY-4.0)

Status: code verified, 24 files readable, 5 matches

[30396] doi:10.1038/s41467-024-45165-7 [paper, repository]

Single nuclei transcriptomics in human and non-human primate striatum in opioid use disorder.

Journal: Nature communications

Authors' code: pfenninglab/Logan_Striatum_snRNA-seq (MIT), pfenninglab/McLean_chronic_opioid_monkey_snRNA-seq (no license), Zenodo 10433681 (CC-BY-4.0), Zenodo 10433683 (CC-BY-4.0)

Status: code verified, 224 files readable, 34 matches

[30397] doi:10.1038/s41586-023-06982-w [paper, repository]

Single-neuronal elements of speech production in humans.

Journal: Nature

Authors' code: evarol/DREDge (MIT), williamunoz/InterpolationAfterDREDge (CC0-1.0)

Status: code verified, 190 files readable, 4 matches

[30398] doi:10.1038/s41586-023-06984-8 [paper, data]

An epigenetic barrier sets the timing of human neuronal maturation.

Journal: Nature

Status: data only, 1 dataset cited

[30399] doi:10.1038/s41597-024-02987-w [paper, repository]

The Swedish National Facility for Magnetoencephalography Parkinson's disease dataset.

Journal: Scientific data

Authors' code: natmegsweden/NatMEG-PD_data (GPL-3.0), mcvinding/warpimg (MIT)

Status: code verified, 44 files readable, 11 matches

[30400] doi:10.1038/s41598-024-52410-y [paper, repository]

Dynamic functional changes upon thalamotomy in essential tremor depend on baseline brain morphometry.

Journal: Scientific reports

Authors' code: TiBiUan/DYNET_Analysis (no license)

Status: code verified, 24 files readable, 8 matches

[30401] doi:10.1038/s41598-024-52879-7 [paper, data]

Olfactory system structure and function in newly hatched and adult locusts.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30402] doi:10.1038/s41598-024-53105-0 [paper, repository]

The Hopf whole-brain model and its linear approximation.

Journal: Scientific reports

Authors' code: adrianponce/Linear-Hopf-model (no license)

Status: code verified, 8 files readable, 4 matches

[30403] doi:10.1073/pnas.2315804121 [paper, repository]

Detecting unitary synaptic events with machine learning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: mrreganwang/Mini_Scripts (no license)

Status: code verified, 22 files readable, 8 matches

[30404] doi:10.1085/jgp.202313464 [paper, data]

Transport of metformin metabolites by guanidinium exporters of the small multidrug resistance family.

Journal: The Journal of general physiology

Status: data only, 2 datasets cited

[30405] doi:10.1117/1.nph.11.1.015005 [paper]

Neuroimaging evidence of visual-vestibular interaction accounting for perceptual mislocalization induced by head rotation.

Journal: Neurophotonics

Status: code on request

[30406] doi:10.1126/sciadv.adj7427 [paper, repository]

Gamma oscillation plasticity is mediated via parvalbumin interneurons.

Journal: Science advances

Authors' code: Zenodo 8432491 (CC-BY-4.0)

Status: code verified, 79 files readable, 2 matches

[30407] doi:10.1161/jaha.123.032259 [paper, repository]

Magnetic Resonance Imaging Tissue Signatures Associated With White Matter Changes Due to Sporadic Cerebral Small Vessel Disease Indicate That White Matter Hyperintensities Can Regress.

Journal: Journal of the American Heart Association

Authors' code: mjt320/HIFI (GPL-3.0)

Status: code verified, 11 files readable, 3 matches

[30408] doi:10.1186/s12920-024-01805-x [paper, data]

Clinical features and molecular genetic investigation of infantile-onset ascending hereditary spastic paralysis (IAHSP) in two Chinese siblings caused by a novel splice site ALS2 variation.

Journal: BMC medical genomics

Status: data only, 1 dataset cited

[30409] doi:10.1186/s13064-023-00178-8 [paper, repository]

A cell atlas of the larval Aedes aegypti ventral nerve cord.

Journal: Neural development

Authors' code: cole-trapnell-lab/monocle-release (no license)

Status: code verified, 67 files readable, 2 matches

[30410] doi:10.1186/s13293-024-00588-1 [paper, data]

The role of microRNAs in understanding sex-based differences in Alzheimer's disease.

Journal: Biology of sex differences

Status: data only, 1 dataset cited

[30411] doi:10.1371/journal.pbio.3002483 [paper, repository]

GABAergic regulation of striatal spiny projection neurons depends upon their activity state.

Journal: PLoS biology

Authors' code: Zenodo 10386496 (CC-BY-4.0), Zenodo 10162264 (CC-BY-4.0), modeldb:266775 (no license), vernonclarke/spnfinal (no license), Zenodo 10162265 (CC-BY-4.0)

Status: code verified, 344 files readable, 3 matches

[30412] doi:10.1371/journal.pone.0289094 [paper, repository]

Estimating person-specific neural correlates of mental rotation: A machine learning approach.

Journal: PloS one

Authors' code: UsluSinan/EEG-correlates-of-mental-rotation (MIT)

Status: code verified, 12 files readable, 4 matches

[30413] doi:10.1371/journal.pone.0295069 [paper, repository]

Longitudinal brain structure changes in Parkinson's disease: A replication study.

Journal: PloS one

Authors' code: LivingPark-MRI/hanganu-etal-2014 (MIT), Zenodo 3509134 (BSD-3-Clause), LivingPark-MRI/livingpark-utils (MIT), pandas-dev/pandas (BSD-3-Clause)

Status: code verified, 3,093 files readable, 6 matches

[30414] doi:10.1523/jneurosci.0265-23.2023 [paper, repository]

Human Sensorimotor Beta Event Characteristics and Aperiodic Signal Are Highly Heritable.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: BioMag/Beta-sibling-study (no license)

Status: code verified, 10 files readable, 8 matches

[30415] doi:10.1523/jneurosci.1009-23.2023 [paper, repository]

Responses to Pattern-Violating Visual Stimuli Evolve Differently Over Days in Somata and Distal Apical Dendrites.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: colleenjg/OpenScope_CA_Analysis (MIT), AllenInstitute/ophys_nway_matching (BSD-2-Clause)

Status: code verified, 103 files readable, 5 matches

[30416] doi:10.3390/math12030455 [paper, data]

Homological landscape of human brain functional sub-circuits.

Journal: Mathematics (Basel, Switzerland)

Status: data only, 2 datasets cited

[30417] doi:10.3758/s13414-024-02846-1 [paper, repository]

(Micro)saccade-related potentials during face recognition: A study combining EEG, eye-tracking, and deconvolution modeling.

Journal: Attention, perception & psychophysics

Authors' code: OSF e2rtp (no license)

Status: code verified, 3 files readable, 4 matches

Tuesday, 30 January 2024 (30 papers)

[30418] doi:10.1016/j.celrep.2024.113718 [paper]

Nerve injury disrupts temporal processing in the spinal cord dorsal horn through alterations in PV⁺ interneurons.

Journal: Cell reports

Status: code on request

[30419] doi:10.1016/j.cortex.2024.01.004 [paper, repository]

Tumour-infiltrated cortex participates in large-scale cognitive circuits.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Authors' code: ErezNeuroLab/Glioma-participation-in-cognitive-circuits (no license)

Status: code verified, 27 files readable, 6 matches

[30420] doi:10.1016/j.isci.2024.109027 [paper, repository]

A deep learning adversarial autoencoder with dynamic batching displays high performance in denoising and ordering scRNA-seq data.

Journal: iScience

Authors' code: LMSCGR/DB-AAE (no license), scverse/scanpy (BSD-3-Clause), pkathail/magic (GPL-2.0), theislab/dca (Apache-2.0), Vivianstats/scImpute (no license), scverse/scvi-tools (BSD-3-Clause), kstreet13/slingshot (no license), Zenodo 10478925 (CC-BY-4.0)

Status: code verified, 561 files readable, 10 matches

[30421] doi:10.1016/j.isci.2024.109051 [paper]

Neuronal reprogramming of mouse and human fibroblasts using transcription factors involved in suprachiasmatic nucleus development.

Journal: iScience

Status: code on request

[30422] doi:10.1016/j.ncrna.2024.01.018 [paper, repository]

Plasma miRNAs as potential biomarkers for schizophrenia in a Jordanian cohort.

Journal: Non-coding RNA research

Authors' code: AbdulmalekAZ/miRNA-ROC-Script (no license)

Status: empty repository, 1 file readable

[30423] doi:10.1016/j.xhgg.2024.100271 [paper]

Biallelic non-productive enhancer-promoter interactions precede imprinted expression of Kcnk9 during mouse neural commitment.

Journal: HGG advances

Status: code on request

[30424] doi:10.1017/s0033291724000023 [paper, repository]

Clarifying directional dependence among measures of early auditory processing and cognition in schizophrenia: leveraging Gaussian graphical models and Bayesian networks.

Journal: Psychological medicine

Authors' code: OSF h78jv (no license)

Status: code verified, 1 file readable, 1 match

[30425] doi:10.1021/acs.jcim.3c01517 [paper, repository]

SerotoninAI: Serotonergic System Focused, Artificial Intelligence-Based Application for Drug Discovery.

Journal: Journal of chemical information and modeling

Authors' code: nczub/SerotoninAI_streamlit (GPL-3.0), jszlek/MODEL_INTERPRETATION (no license)

Status: code verified, 10 files readable, 4 matches

[30426] doi:10.1038/s41467-024-44979-9 [paper]

Early excitatory-inhibitory cortical modifications following skill learning are associated with motor memory consolidation and plasticity overnight.

Journal: Nature communications

Status: code on request

[30427] doi:10.1038/s41588-024-01653-6 [paper, data]

Cell-type-specific CAG repeat expansions and toxicity of mutant Huntingtin in human striatum and cerebellum.

Journal: Nature genetics

Status: data only, 2 datasets cited

[30428] doi:10.1038/s41598-024-52355-2 [paper]

Insights from a model based study on optimizing non invasive brain electrical stimulation for Parkinson's disease.

Journal: Scientific reports

Status: code on request

[30429] doi:10.1038/s41598-024-52914-7 [paper, data]

TRIM59 suppresses the brain ischaemia/reperfusion injury and pyroptosis of microglial through mediating the ubiquitination of NLRP3.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30430] doi:10.1073/pnas.2305947121 [paper, data]

Effective treatment of optic neuropathies by intraocular delivery of MSC-sEVs through augmenting the G-CSF-macrophage pathway.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[30431] doi:10.1073/pnas.2312281120 [paper, repository]

Structure and function of the hippocampal CA3 module.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: billkarsh/Alignment_Projects (BSD-3-Clause), scalableminds/webknossos-wrap (MIT), gaspar-c/replay-simulations (no license)

Status: code verified, 440 files readable, 2 matches

[30432] doi:10.1093/pnasnexus/pgae003 [paper, repository]

Prenatal substance exposure and child health: Understanding the role of environmental factors, genetics, and brain development.

Journal: PNAS nexus

Authors' code: gzixin/Prenatal-substance-exposure-child-and-adolescent-health (GPL-3.0)

Status: code verified, 7 files readable, 4 matches

[30433] doi:10.1186/s12950-023-00374-7 [paper, data]

Role of meningeal immunity in brain function and protection against pathogens.

Journal: Journal of inflammation (London, England)

Status: data only, 3 datasets cited

[30434] doi:10.1186/s12974-024-03028-4 [paper, data]

Enhanced meningeal lymphatic drainage ameliorates lipopolysaccharide-induced brain injury in aged mice.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[30435] doi:10.1186/s13023-024-03040-0 [paper]

Molecular landscape of congenital vertebral malformations: recent discoveries and future directions.

Journal: Orphanet journal of rare diseases

Status: data only

[30436] doi:10.1364/boe.504039 [paper, repository]

Fast light-field 3D microscopy with out-of-distribution detection and adaptation through conditional normalizing flows.

Journal: Biomedical optics express

Authors' code: pvjosue/CWFA (MIT)

Status: code verified, 28 files readable, 8 matches

[30437] doi:10.1364/boe.507371 [paper, repository]

Laser speckle imaging of the hippocampus.

Journal: Biomedical optics express

Authors' code: CFIN-Optics/Laser-Speckle-Imaging-of-the-Hippocampus (no license)

Status: empty repository, 1 file readable

[30438] doi:10.1371/journal.pcbi.1011400 [paper, repository]

Radiation necrosis after radiation therapy treatment of brain metastases: A computational approach.

Journal: PLoS computational biology

Authors' code: JuanJS117/MesoscopicModel (GPL-3.0)

Status: code verified, 14 files readable, 5 matches

[30439] doi:10.3389/fnagi.2024.1273738 [paper, data]

Oscillatory characteristics of resting-state magnetoencephalography reflect pathological and symptomatic conditions of cognitive impairment.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[30440] doi:10.3389/fninf.2023.1272791 [paper, repository]

Introducing Region Based Pooling for handling a varied number of EEG channels for deep learning models.

Journal: Frontiers in neuroinformatics

Authors' code: hatlestad-hall/prep-childmind-eeg (MIT), thomastveitstol/RegionBasedPoolingEEG (no license)

Status: code verified, 90 files readable, 12 matches

[30441] doi:10.3389/fnins.2023.1320296 [paper, repository]

Multiple diffusion metrics in differentiating solid glioma from brain inflammation.

Journal: Frontiers in neuroscience

Authors' code: salan668/FAE (Apache-2.0)

Status: code verified, 95 files readable, 1 match

[30442] doi:10.3389/fnins.2024.1352841 [paper, repository]

A brain-inspired approach for SAR-to-optical image translation based on diffusion models.

Journal: Frontiers in neuroscience

Authors' code: MarsZhaoYT/Sar2Opt-Heterogeneous-Dataset (MIT)

Status: code verified, 353 files readable, 2 matches

[30443] doi:10.3389/fonc.2023.1248452 [paper, data]

Brain tumor classification: a novel approach integrating GLCM, LBP and composite features.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[30444] doi:10.3389/fpsyt.2024.1288808 [paper, repository]

Manifold alteration between major depressive disorder and healthy control subjects using dynamic mode decomposition in resting-state fMRI data.

Journal: Frontiers in psychiatry

Authors' code: hoxo-m/densratio_py (MIT)

Status: code verified, 18 files readable, 3 matches

[30445] doi:10.3390/brainsci14020146 [paper, data]

Extensive Visual Training in Adulthood Reduces an Implicit Neural Marker of the Face Inversion Effect.

Journal: Brain sciences

Status: data only, 1 dataset cited

[30446] doi:10.3758/s13415-024-01154-3 [paper, repository]

Motivated with joy or anxiety: Does approach-avoidance goal framing elicit differential reward-network activation in the brain?

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF bnsvm (no license)

Status: empty repository

[30447] doi:10.7554/elife.87820 [paper, repository]

Behavioral entrainment to rhythmic auditory stimulation can be modulated by tACS depending on the electrical stimulation field properties.

Journal: eLife

Authors' code: ycabralcalderin/cabral-calderin_et_al_elife_2023 (MIT)

Status: code verified, 9 files readable, 9 matches

Monday, 29 January 2024 (20 papers, 17 on this page)

[30448] doi:10.1007/s00213-024-06541-9 [paper, repository]

L-DOPA and oxytocin influence the neural correlates of performance monitoring for self and others.

Journal: Psychopharmacology

Authors' code: OSF 5jhvk (no license)

Status: code verified, 1 file readable, 2 matches

[30449] doi:10.1007/s42452-024-05624-8 [paper, repository]

Modelling cortical network dynamics.

Journal: SN applied sciences

Authors' code: gercoo/sz_propagation (no license)

Status: code verified, 17 files readable, 4 matches

[30450] doi:10.1016/j.isci.2024.109040 [paper]

Dragonfly visual evolutionary neural network: A novel bionic optimizer with related LSGO and engineering design optimization.

Journal: iScience

Status: code on request

[30451] doi:10.1038/s41467-024-44836-9 [paper, repository]

Dorsal hippocampus to nucleus accumbens projections drive reinforcement via activation of accumbal dynorphin neurons.

Journal: Nature communications

Authors' code: khairunisa-ibrahim/Ibrahim-Massaly-2023 (Apache)

Status: code verified, 3 files readable

[30452] doi:10.1073/pnas.2306937121 [paper, repository]

Visual guidance fine-tunes probing movements of an insect appendage.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: annastoeckl/Code_Kannegieser_et_al_2024 (GPL-3.0)

Status: code verified, 17 files readable, 7 matches

[30453] doi:10.1073/pnas.2312861121 [paper, data]

FOXD3-mediated transactivation of ALKBH5 promotes neuropathic pain via m⁶A-dependent stabilization of 5-HT3A mRNA in sensory neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[30454] doi:10.1073/pnas.2316294121 [paper, data]

The human somatosensory cortex contributes to the encoding of newly learned movements.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[30455] doi:10.1080/07853890.2024.2308077 [paper, data]

Substance basis and pharmacological mechanism of heat-clearing herbs in the treatment of ischaemic encephalopathy: a systematic review and network pharmacology.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[30456] doi:10.1159/000536189 [paper, data]

Symptoms of Isolated Optic Neuropathy in a Patient with Systemic, Brain, and Meningeal Metastases from Breast Cancer: A Case Report.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[30457] doi:10.1186/s12885-023-11650-3 [paper, data]

Prognostic marker CXCL5 in glioblastoma polyformis and its mechanism of immune invasion.

Journal: BMC cancer

Status: data only, 1 dataset cited

[30458] doi:10.1186/s12967-024-04893-6 [paper, data]

Exosomes: potential targets for the diagnosis and treatment of neuropsychiatric disorders.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[30459] doi:10.1186/s40708-023-00215-6 [paper]

The onset of motor learning impairments in Parkinson's disease: a computational investigation.

Journal: Brain informatics

Status: code on request

[30460] doi:10.1371/journal.pbio.3002383 [paper, data]

The representation of priors and decisions in the human parietal cortex.

Journal: PLoS biology

Status: data only, 1 dataset cited

[30461] doi:10.1371/journal.pone.0297166 [paper, data]

Src-NADH dehydrogenase subunit 2 complex and recognition memory of imprinting in domestic chicks.

Journal: PloS one

Status: data only, 2 datasets cited

[30462] doi:10.1523/eneuro.0384-23.2023 [paper, repository]

Afferents to Action: Cortical Proprioceptive Processing Assessed with Corticokinematic Coherence Specifically Relates to Gross Motor Skills.

Journal: eNeuro

Authors' code: OSF 46bsg (no license)

Status: code verified, 3 files readable, 2 matches

[30463] doi:10.1523/eneuro.0503-23.2023 [paper, repository]

Cell-Type Specific Connectivity of Whisker-Related Sensory and Motor Cortical Input to Dorsal Striatum.

Journal: eNeuro

Authors' code: margolislab (no license)

Status: code verified

[30464] doi:10.3389/fnmol.2023.1353562 [paper, data]

Human iPSC-derived neurons reveal NMDAR-independent dysfunction following HIV-associated insults.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

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