Every paper, by date: page 137

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 137 of 200: 29 January 2024 to 17 January 2024.

Monday, 29 January 2024 (20 papers, 3 on this page)

[30465] doi:10.3390/biomedicines12020308 [paper, data]

Cell States and Interactions of CD8 T Cells and Disease-Enriched Microglia in Human Brains with Alzheimer's Disease.

Journal: Biomedicines

Status: data only, 1 dataset cited

[30466] doi:10.3390/s24030877 [paper, repository]

Exploring Convolutional Neural Network Architectures for EEG Feature Extraction.

Journal: Sensors (Basel, Switzerland)

Authors' code: Zenodo 3987894 (CC-BY-4.0)

Status: empty repository

[30467] doi:10.7554/elife.91949 [paper, repository]

osl-dynamics, a toolbox for modeling fast dynamic brain activity.

Journal: eLife

Authors' code: osl-dynamics.readthedocs.io (no license), Zenodo 6875059 (BSD-3-Clause)

Status: code verified, 116 files readable, 11 matches

Sunday, 28 January 2024 (2 papers)

[30468] doi:10.1002/acn3.51990 [paper, repository]

Plasma proteomic profiles of UK Biobank participants with multiple sclerosis.

Journal: Annals of clinical and translational neurology

Authors' code: benjacobs123456.github.io/ukb_proteomics (no license)

Status: code verified

[30469] doi:10.3390/s24030842 [paper, repository]

Two-Stage Atomic Decomposition of Multichannel EEG and the Previously Undetectable Sleep Spindles.

Journal: Sensors (Basel, Switzerland)

Authors' code: develancer/empi (GPL-3.0), klacourse/MODA_GC (GPL-3.0), fuw_software/mp-dip (GPL-3.0)

Status: code verified, 268 files readable, 3 matches

Saturday, 27 January 2024 (4 papers)

[30470] doi:10.1038/s41398-024-02745-x [paper]

Electrophysiological signatures of anxiety in Parkinson's disease.

Journal: Translational psychiatry

Status: code on request

[30471] doi:10.1038/s41419-024-06480-5 [paper, data]

TRPM8 inhibits substance P release from primary sensory neurons via PKA/GSK-3beta to protect colonic epithelium in colitis.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[30472] doi:10.1038/s41467-024-44989-7 [paper, repository]

iPSC-derived models of PACS1 syndrome reveal transcriptional and functional deficits in neuron activity.

Journal: Nature communications

Authors' code: satijalab/seurat (other), cole-trapnell-lab/monocle3 (other), hbctraining.github.io/scrna-seq (no license), marcdossantosPHD/PenzesLabimaging (no license)

Status: code verified, 199 files readable, 7 matches

[30473] doi:10.1038/s41467-024-45199-x [paper, repository]

Single-cell multiomics decodes regulatory programs for mouse secondary palate development.

Journal: Nature communications

Authors' code: fangfang0906/Single_cell_multiome_palate (no license)

Status: code verified, 9 files readable, 8 matches

Friday, 26 January 2024 (17 papers)

[30474] doi:10.1007/s10162-023-00924-z [paper, repository]

Insights Into Electrophysiological Metrics of Cochlear Health in Cochlear Implant Users Using a Computational Model.

Journal: Journal of the Association for Research in Otolaryngology : JARO

Authors' code: tjbrochier/eCAP-AGF-Methods (no license), Zenodo 4674563 (CC-BY-4.0)

Status: code verified, 15 files readable, 2 matches

[30475] doi:10.1016/j.isci.2024.108997 [paper]

Calcium-binding protein 7 expressed in muscle negatively regulates age-related degeneration of neuromuscular junctions in mice.

Journal: iScience

Status: code on request

[30476] doi:10.1016/j.isci.2024.109009 [paper, repository]

Spatial and single-nucleus transcriptomics decoding the molecular landscape and cellular organization of avian optic tectum.

Journal: iScience

Authors' code: Coleliao/Spatial_OT (no license), aristoteleo/spateo-release (BSD-2-Clause), STOmics/SAW (GPL-3.0)

Status: code verified, 280 files readable, 19 matches

[30477] doi:10.1016/j.isci.2024.109035 [paper, repository]

The hippocampus contributes to retroactive stimulus associations during trace fear conditioning.

Journal: iScience

Authors' code: kpeez/fiberphotopy (MIT)

Status: code verified, 12 files readable, 4 matches

[30478] doi:10.1016/j.isci.2024.109039 [paper]

FGF9 is required for Purkinje cell development and function in the cerebellum.

Journal: iScience

Status: code on request

[30479] doi:10.1016/j.isci.2024.109041 [paper, repository]

Exploring sexual dimorphism in basal forebrain volume changes during aging and neurodegenerative diseases.

Journal: iScience

Authors' code: aibl.org.au (no license)

Status: code verified

[30480] doi:10.1016/j.jlr.2024.100510 [paper, data]

Nuclear SphK2/S1P signaling is a key regulator of ApoE production and Aβ uptake in astrocytes.

Journal: Journal of lipid research

Status: data only, 1 dataset cited

[30481] doi:10.1038/s41380-024-02420-z [paper, data]

Brain and blood transcriptome profiles delineate common genetic pathways across suicidal ideation and suicide.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[30482] doi:10.1038/s41467-023-44503-5 [paper, repository]

Using deep learning to quantify neuronal activation from single-cell and spatial transcriptomic data.

Journal: Nature communications

Authors' code: Zenodo 10183210 (CC-BY-4.0)

Status: code verified

[30483] doi:10.1038/s41467-024-44863-6 [paper, repository]

Structural connectome architecture shapes the maturation of cortical morphology from childhood to adolescence.

Journal: Nature communications

Authors' code: NeuroAI-HD/HD-BET (Apache-2.0), Xinyuan-Liang/SC-shapes-the-maturation-of-cortical-morphology (GPL-2.0), rmarkello/abagen (BSD-3-Clause), Zenodo 10423891 (CC-BY-4.0)

Status: code verified, 86 files readable, 8 matches

[30484] doi:10.1073/pnas.2312898121 [paper, repository]

A disinhibitory circuit mechanism explains a general principle of peak performance during mid-level arousal.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF fcext (no license)

Status: code verified, 57 files readable, 3 matches

[30485] doi:10.1242/jcs.261527 [paper, data]

Multi-monoubiquitylation controls VASP-mediated actin dynamics.

Journal: Journal of cell science

Status: data only, 2 datasets cited

[30486] doi:10.1371/journal.pcbi.1011843 [paper, repository]

Short-term Hebbian learning can implement transformer-like attention.

Journal: PLoS computational biology

Authors' code: iellwood/MatchAndControlPaper (no license)

Status: code verified, 55 files readable, 4 matches

[30487] doi:10.1371/journal.pone.0295054 [paper, repository]

Information-theoretical analysis of the neural code for decoupled face representation.

Journal: PloS one

Authors' code: lucamar91/faces_task (no license)

Status: code verified, 4 files readable, 1 match

[30488] doi:10.1523/eneuro.0371-23.2023 [paper, repository]

Bilateral Retinofugal Pathfinding Impairments Limit Behavioral Compensation in Near-Congenital One-Eyed <i>Xenopus laevis</i>.

Journal: eNeuro

Authors' code: Zenodo 7781042 (other-open), mforsthofer/mono_tadpoles (no license)

Status: code verified, 8 files readable, 1 match

[30489] doi:10.3390/bioengineering11020124 [paper, data]

Elucidating Multimodal Imaging Patterns in Accelerated Brain Aging: Heterogeneity through a Discriminant Analysis Approach Using the UK Biobank Dataset.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[30490] doi:10.7554/elife.70276 [paper, data]

Tempo and mode of gene expression evolution in the brain across primates.

Journal: eLife

Status: data only, 2 datasets cited

Thursday, 25 January 2024 (33 papers)

[30491] doi:10.1016/j.isci.2024.109016 [paper]

DExH-box helicase 9 modulates hippocampal synapses and regulates neuropathic pain.

Journal: iScience

Status: code on request

[30492] doi:10.1016/j.stemcr.2023.12.008 [paper, repository]

DeePhys: A machine learning-assisted platform for electrophysiological phenotyping of human neuronal networks.

Journal: Stem cell reports

Authors' code: hornauerp/DeePhys (no license)

Status: code verified, 791 files readable, 13 matches

[30493] doi:10.1021/acsomega.3c10230 [paper, data]

PSSP-MFFNet: A Multifeature Fusion Network for Protein Secondary Structure Prediction.

Journal: ACS omega

Status: data only, 1 dataset cited

[30494] doi:10.1038/s41398-024-02775-5 [paper, data]

A zinc finger transcription factor enables social behaviors while controlling transposable elements and immune response in prefrontal cortex.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[30495] doi:10.1038/s41467-024-44983-z [paper, repository]

A developmental increase of inhibition promotes the emergence of hippocampal ripples.

Journal: Nature communications

Authors' code: OpatzLab/HanganuOpatzToolbox (GPL-3.0), iinnpp/spwr_snn (GPL-3.0), Zenodo 10424461 (CC-BY-4.0)

Status: code verified, 626 files readable, 15 matches

[30496] doi:10.1038/s41597-023-02787-8 [paper, repository]

An EEG motor imagery dataset for brain computer interface in acute stroke patients.

Journal: Scientific data

Authors' code: AriaChadha/motor-imagery-leakage (no license)

Status: code verified, 40 files readable, 6 matches

[30497] doi:10.1038/s41598-023-50830-w [paper, repository]

Differential recruitment of brain circuits during fear extinction in non-stressed compared to stress resilient animals.

Journal: Scientific reports

Authors' code: cookpa/socialdefeat (MIT)

Status: code verified, 3 files readable

[30498] doi:10.1038/s41598-024-51765-6 [paper, repository]

GlioPredictor: a deep learning model for identification of high-risk adult IDH-mutant glioma towards adjuvant treatment planning.

Journal: Scientific reports

Authors' code: irb.northwestern.edu/about (no license)

Status: code verified

[30499] doi:10.1038/s41598-024-51797-y [paper]

Functional neurogenomic responses to acoustic threats, including a heterospecific referential alarm call and its referent, in the auditory forebrain of red-winged blackbirds.

Journal: Scientific reports

Status: data only

[30500] doi:10.1038/s41598-024-52200-6 [paper, data]

Single cell transcriptomic representation of social dominance in prefrontal cortex and the influence of preweaning maternal and postweaning social environment.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30501] doi:10.1038/s41598-024-52276-0 [paper, data]

Integrative analysis of gene expression profiles of substantia nigra identifies potential diagnosis biomarkers in Parkinson's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30502] doi:10.1038/s41598-024-52311-0 [paper, repository]

Transcriptional characterization of iPSC-derived microglia as a model for therapeutic development in neurodegeneration.

Journal: Scientific reports

Authors' code: rsankowski/sankowski-et-al-microglia (no license)

Status: code verified, 37 files readable, 2 matches

[30503] doi:10.1038/s42003-024-05807-4 [paper, repository]

Sex modulation of faces prediction error in the autistic brain.

Journal: Communications biology

Authors' code: OSF n3f2g (no license)

Status: code verified, 5 files readable, 16 matches

[30504] doi:10.1073/pnas.2311936121 [paper, data]

A plant flavonol and genetic suppressors rescue a pathogenic mutation associated with kinesin in neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[30505] doi:10.1093/noajnl/vdae005 [paper, repository]

Single-nucleus expression characterization of non-enhancing region of recurrent high-grade glioma.

Journal: Neuro-oncology advances

Authors' code: ktessema/PatelTessema_Glioma_NEvsCE_2023 (no license)

Status: dead link

[30506] doi:10.1117/1.nph.11.2.024202 [paper, repository]

Seizure event detection using intravital two-photon calcium imaging data.

Journal: Neurophotonics

Authors' code: Stern-MA/2PCISz_RecDetect (GPL-3.0)

Status: code verified, 16 files readable, 10 matches

[30507] doi:10.1162/imag_a_00063 [paper, repository]

A structural heart-brain axis mediates the association between cardiovascular risk and cognitive function.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: akshay-jaggi/heart_brain_mediation (MIT)

Status: code verified, 33 files readable, 9 matches

[30508] doi:10.1162/imag_a_00073 [paper]

Intermittent theta burst stimulation with synchronised transcranial alternating current stimulation leads to enhanced frontal theta oscillations and a positive shift in emotional bias.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[30509] doi:10.1162/imag_a_00074 [paper, repository]

A reproducible and generalizable software workflow for analysis of large-scale neuroimaging data collections using BIDS Apps.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 7717239 (BSD-3-Clause), Zenodo 3608611 (CC-BY-SA-4.0), datalad-handbook/book (CC-BY-SA-4.0)

Status: code verified, 21 files readable, 1 match

[30510] doi:10.1162/imag_a_00078 [paper, repository]

Meta-modeling the effects of anodal left prefrontal transcranial direct current stimulation on working memory performance.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Miles2708/Metamodeling_WM (no license)

Status: code verified, 4 files readable, 2 matches

[30511] doi:10.1186/s12915-024-01827-y [paper, repository]

Quantifying the proportion of different cell types in the human cortex using DNA methylation profiles.

Journal: BMC biology

Authors' code: ejh243/brainfans (Artistic-2.0), ds420/CETYGO (Artistic-2.0), Zenodo 10418430 (CC-BY-4.0), ejh243/cetygo (Artistic-2.0)

Status: code verified, 269 files readable, 21 matches

[30512] doi:10.1186/s13073-024-01281-z [paper, data]

mRNA-based precision targeting of neoantigens and tumor-associated antigens in malignant brain tumors.

Journal: Genome medicine

Status: code on request, 5 datasets cited

[30513] doi:10.1186/s13244-023-01579-3 [paper, repository]

A matched case-control study of early cervical spondylotic myelopathy based on diffusion magnetic resonance imaging.

Journal: Insights into imaging

Authors' code: neuropoly/spinalcordtoolbox (LGPL-3.0)

Status: code verified, 232 files readable, 1 match

[30514] doi:10.1186/s40798-023-00665-6 [paper, data]

The Use of Biofluid Markers to Evaluate the Consequences of Sport-Related Subconcussive Head Impact Exposure: A Scoping Review.

Journal: Sports medicine - open

Status: data only, 1 dataset cited

[30515] doi:10.1364/boe.510020 [paper, repository]

Phase unwrapping for MHz optical coherence elastography and application to brain tumor tissue.

Journal: Biomedical optics express

Authors' code: figshare 24412507 (CC-BY-4.0)

Status: code verified, 1 file readable, 8 matches

[30516] doi:10.1371/journal.pbio.3002468 [paper, data]

The forkhead transcription factor Foxj1 controls vertebrate olfactory cilia biogenesis and sensory neuron differentiation.

Journal: PLoS biology

Status: data only, 1 dataset cited

[30517] doi:10.1371/journal.pone.0297114 [paper, repository]

Multiphysics simulation of magnetoelectric micro core-shells for wireless cellular stimulation therapy via magnetic temporal interference.

Journal: PloS one

Authors' code: mladenveletic/neuronStim (no license)

Status: code verified, 2 files readable, 1 match

[30518] doi:10.1523/eneuro.0074-23.2023 [paper, repository]

Gordon Holmes Syndrome Model Mice Exhibit Alterations in Microglia, Age, and Sex-Specific Disruptions in Cognitive and Proprioceptive Function.

Journal: eNeuro

Authors' code: mabblab/Microglia-analysis (no license)

Status: code verified, 1 file readable

[30519] doi:10.3389/fgene.2024.1277541 [paper, data]

Pan-cancer and single-cell analysis reveal THRAP3 as a prognostic and immunological biomarker for multiple cancer types.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[30520] doi:10.7150/ijbs.91624 [paper, data]

The NAD&lt;sup&gt;+&lt;/sup&gt; Precursor Nicotinamide Riboside Rescues Mitochondrial Defects and Neuronal Loss in iPSC derived Cortical Organoid of Alpers' Disease.

Journal: International journal of biological sciences

Status: data only, 1 dataset cited

[30521] doi:10.7554/elife.83708 [paper, repository]

Involvement of superior colliculus in complex figure detection of mice.

Journal: eLife

Authors' code: leoniecazemier/SC-figure-detection (no license)

Status: code verified, 45 files readable, 12 matches

[30522] doi:10.7554/elife.88321 [paper, repository]

A system of feed-forward cerebellar circuits that extend and diversify sensory signaling.

Journal: eLife

Authors' code: modeldb:2015953 (no license)

Status: code verified

[30523] doi:10.7717/peerj-cs.1829 [paper, repository]

A comprehensive exploration of machine learning techniques for EEG-based anxiety detection.

Journal: PeerJ. Computer science

Authors' code: supp:PMC10909191/peerj-cs-10-1829-s001.py (no license), supp:PMC10909191/peerj-cs-10-1829-s002.py (no license)

Status: code verified, 2 files readable, 2 matches

Wednesday, 24 January 2024 (34 papers)

[30524] doi:10.1016/j.heliyon.2024.e24975 [paper, repository]

Rare and common genetic determinants of mitochondrial function determine severity but not risk of amyotrophic lateral sclerosis.

Journal: Heliyon

Authors' code: MRCIEU/TwoSampleMR (other)

Status: code verified, 73 files readable, 3 matches

[30525] doi:10.1016/j.isci.2024.109023 [paper, repository]

Deep learning aided preoperative diagnosis of primary central nervous system lymphoma.

Journal: iScience

Authors' code: MIC-DKFZ/nnUNet (Apache-2.0), MIC-DKFZ/iScience_GlioLymph_classification (CC-BY-NC-4.0)

Status: code verified, 241 files readable

[30526] doi:10.1016/j.neuroimage.2024.120523 [paper, repository]

Whole-brain mapping of increased manganese levels in welders and its association with exposure and motor function.

Journal: NeuroImage

Authors' code: mjt320/HIFI (GPL-3.0)

Status: code verified, 11 files readable, 3 matches

[30527] doi:10.1016/j.nicl.2024.103569 [paper, repository]

Characterizing upper extremity fine motor function in the presence of white matter hyperintensities: A 7 T MRI cross-sectional study in older adults.

Journal: NeuroImage. Clinical

Authors' code: srikash/presurfer (no license), gsanroma/bullseye_pipeline (BSD-3-Clause), jyeatman/lifespan (GPL-2.0)

Status: code verified, 35 files readable, 6 matches

[30528] doi:10.1016/j.ohx.2024.e00507 [paper, data]

A low-cost, wireless, 4-channel EEG measurement system used in virtual reality environments.

Journal: HardwareX

Status: data only, 1 dataset cited

[30529] doi:10.1016/j.redox.2024.103057 [paper, data]

A natural small molecule aspidosperma-type alkaloid, hecubine, as a new TREM2 activator for alleviating lipopolysaccharide-induced neuroinflammation in vitro and in vivo.

Journal: Redox biology

Status: data only, 1 dataset cited

[30530] doi:10.1021/acsmedchemlett.3c00391 [paper, data]

Nicotinamide Phosphoribosyltransferase Positive Allosteric Modulators Attenuate Neuronal Oxidative Stress.

Journal: ACS medicinal chemistry letters

Status: data only, 1 dataset cited

[30531] doi:10.1038/s41386-023-01789-9 [paper, repository]

Reproducible stability of verbal and spatial functions along the menstrual cycle.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: OSF bks6f (no license)

Status: code verified, 1 file readable, 2 matches

[30532] doi:10.1038/s41467-023-44684-z [paper, repository]

Emergence of periodic circumferential actin cables from the anisotropic fusion of actin nanoclusters during tubulogenesis.

Journal: Nature communications

Authors' code: SayakaSekine/Nanocluster_motion (no license), signaling.riken.jp/tools/imagej-plugins (no license)

Status: code verified, 2 files readable

[30533] doi:10.1038/s41467-024-44805-2 [paper, repository]

Shape-changing electrode array for minimally invasive large-scale intracranial brain activity mapping.

Journal: Nature communications

Authors' code: OSF kucgw (no license)

Status: code verified, 1 file readable

[30534] doi:10.1038/s41467-024-44882-3 [paper, repository]

Subfield-specific interneuron circuits govern the hippocampal response to novelty in male mice.

Journal: Nature communications

Authors' code: ThomasHainmueller/HainmuellerCazala_et_al_2023 (no license)

Status: code verified, 217 files readable, 12 matches

[30535] doi:10.1038/s41597-024-02985-y [paper, data]

DNA methylome, R-loop and clinical exome profiling of patients with sporadic amyotrophic lateral sclerosis.

Journal: Scientific data

Status: data only, 29 datasets cited

[30536] doi:10.1038/s41598-024-51340-z [paper, repository]

Identification of genes with oscillatory expression in glioblastoma: the paradigm of SOX2.

Journal: Scientific reports

Authors' code: Papalopulu-Lab/Fu2023 (MIT)

Status: code verified, 74 files readable, 3 matches

[30537] doi:10.1038/s41598-024-52423-7 [paper, repository]

Downstream network transformations dissociate neural activity from causal functional contributions.

Journal: Scientific reports

Authors' code: kuffmode/contribution-modes (MIT), Zenodo 5636435 (MIT), kuffmode/msa (MIT)

Status: code verified, 19 files readable, 2 matches

[30538] doi:10.1038/s42003-024-05766-w [paper, repository]

Modular subgraphs in large-scale connectomes underpin spontaneous co-fluctuation events in mouse and human brains.

Journal: Communications biology

Authors' code: brain-networks/event_detection (no license)

Status: code verified, 5 files readable, 3 matches

[30539] doi:10.1093/pnasnexus/pgae032 [paper, data]

Unraveling the hierarchical structure of posture and muscle activity changes during mating of <i>Caenorhabditis elegans</i>.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[30540] doi:10.1098/rsob.230386 [paper, repository]

Single-cell expression predicts neuron-specific protein homeostasis networks.

Journal: Open biology

Authors' code: pechmannlab/neuroPN (MIT), Zenodo 10171304 (CC-BY-4.0)

Status: code verified, 24 files readable, 7 matches

[30541] doi:10.1098/rsos.230420 [paper, repository]

Modelling of longitudinally cut carrot curling induced by the vascular cylinder-cortex interference pressure.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7021196 (no license)

Status: code found, still to be checked

[30542] doi:10.1117/1.jbo.29.1.015002 [paper]

HyperTRCSS: A hyperspectral time-resolved compressive sensing spectrometer for depth-sensitive monitoring of cytochrome-c-oxidase and blood oxygenation.

Journal: Journal of biomedical optics

Status: code on request

[30543] doi:10.1117/1.jbo.29.1.016501 [paper]

Rapid, high-contrast, and steady volumetric imaging with Bessel-beam-based two-photon fluorescence microscopy.

Journal: Journal of biomedical optics

Status: code on request

[30544] doi:10.1126/sciadv.adj3786 [paper, repository]

Optimal trade-off control in machine learning-based library design, with application to adeno-associated virus (AAV) for gene therapy.

Journal: Science advances

Authors' code: Zenodo 10064777 (CC-BY-4.0), dhbrookes/aav_clean (MIT)

Status: code verified, 22 files readable, 8 matches

[30545] doi:10.1126/sciadv.adj5279 [paper, repository]

Identification of region-specific gene isoforms in the human brain using long-read transcriptome sequencing.

Journal: Science advances

Authors' code: mihshimada/Brain_Iso-Seq (MIT), Zenodo 10398061 (CC-BY-4.0)

Status: code verified, 24 files readable, 3 matches

[30546] doi:10.1136/bmjno-2023-000501 [paper, data]

Impaired mobility and MRI markers of vascular brain injury: Atherosclerosis Risk in Communities and UK Biobank studies.

Journal: BMJ neurology open

Status: data only, 1 dataset cited

[30547] doi:10.1152/jn.00413.2023 [paper, data]

On the contrast response function of adapted neural populations.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[30548] doi:10.1186/s12864-024-10013-x [paper, repository]

Comparative and integrative single cell analysis reveals new insights into the transcriptional immaturity of stem cell-derived β cells.

Journal: BMC genomics

Authors' code: mschmidt22 (no license)

Status: code verified

[30549] doi:10.1186/s12987-023-00502-8 [paper, repository]

Ch^OP-CT: quantitative morphometrical analysis of the Hindbrain Choroid Plexus by X-ray micro-computed tomography.

Journal: Fluids and barriers of the CNS

Authors' code: CEITEC-CTLAB (no license)

Status: code verified

[30550] doi:10.1186/s12993-024-00228-z [paper, repository]

Structural connectome alterations between individuals with autism and neurotypical controls using feature representation learning.

Journal: Behavioral and brain functions : BBF

Authors' code: camin-neuro/caminopen (no license)

Status: code verified, 19 files readable, 6 matches

[30551] doi:10.1242/dev.202110 [paper, repository]

BRD4 binds to active cranial neural crest enhancers to regulate RUNX2 activity during osteoblast differentiation.

Journal: Development (Cambridge, England)

Authors' code: GordonLab/riesling-pipeline (MIT)

Status: code verified, 18 files readable, 2 matches

[30552] doi:10.1523/jneurosci.0948-23.2023 [paper, repository]

Does Ipsilateral Remapping Following Hand Loss Impact Motor Control of the Intact Hand?

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF hsvkc (no license)

Status: code found, still to be checked

[30553] doi:10.3389/fnins.2023.1336026 [paper, data]

Levetiracetam modulates brain metabolic networks and transcriptomic signatures in the 5XFAD mouse model of Alzheimer's disease.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[30554] doi:10.3389/fpsyt.2023.1273044 [paper, data]

The effect of montages of transcranial alternating current stimulation on occipital responses-a sham-controlled pilot study.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[30555] doi:10.3390/ijms25031438 [paper, data]

TonEBP: A Key Transcription Factor in Microglia Following Intracerebral Hemorrhage Induced-Neuroinflammation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[30556] doi:10.7554/elife.84628 [paper, repository]

The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics.

Journal: eLife

Authors' code: lmweber/locus-c (MIT), lmweber/WeberDivechaLCdata (MIT)

Status: code verified, 133 files readable, 31 matches

[30557] doi:10.7554/elife.89076 [paper, data]

The involvement of the human prefrontal cortex in the emergence of visual awareness.

Journal: eLife

Status: data only, 2 datasets cited

Tuesday, 23 January 2024 (26 papers)

[30558] doi:10.1016/j.celrep.2024.113693 [paper]

Massively parallel disruption of enhancers active in human neural stem cells.

Journal: Cell reports

Status: code on request

[30559] doi:10.1016/j.neuron.2023.12.020 [paper]

Direct neuronal reprogramming of NDUFS4 patient cells identifies the unfolded protein response as a novel general reprogramming hurdle.

Journal: Neuron

Status: code on request

[30560] doi:10.1021/acs.molpharmaceut.3c00700 [paper, repository]

Role of Transporters and Enzymes in Metabolism and Distribution of 4-Chlorokynurenine (AV-101).

Journal: Molecular pharmaceutics

Authors' code: genepi/imputationserver (AGPL-3.0)

Status: code verified, 78 files readable, 2 matches

[30561] doi:10.1038/s41398-024-02758-6 [paper, repository]

TrkB-dependent regulation of molecular signaling across septal cell types.

Journal: Translational psychiatry

Authors' code: LieberInstitute/septum_lateral (no license), Zenodo 8048275 (other-open)

Status: code verified, 42 files readable, 11 matches

[30562] doi:10.1038/s41467-024-44844-9 [paper, repository]

Acoustic and language-specific sources for phonemic abstraction from speech.

Journal: Nature communications

Authors' code: acmai/NCOMMS-23-00607 (no license)

Status: code verified, 12 files readable, 4 matches

[30563] doi:10.1038/s41467-024-44871-6 [paper, repository]

Latent representations in hippocampal network model co-evolve with behavioral exploration of task structure.

Journal: Nature communications

Authors' code: ianconehed/latent_reps_hpc (CC0-1.0), Zenodo 10188162 (CC-BY-4.0)

Status: code verified, 28 files readable

[30564] doi:10.1038/s41531-024-00638-w [paper, repository]

Discovering genetic mechanisms underlying the co-occurrence of Parkinson's disease and non-motor traits.

Journal: NPJ Parkinson's disease

Authors' code: Genome3d/Parkinsons_disease_genetics (no license), Genome3d/codes3d (MIT), Genome3d/multimorbid3D (no license), gpp-rnd/stringdb (MIT), MRCIEU/TwoSampleMR (other), ibi_group/comorbidity (MIT), HHS/uts-rest-api (no license)

Status: code verified, 204 files readable, 17 matches

[30565] doi:10.1038/s41593-023-01549-4 [paper, repository]

Single-cell transcriptomics reveals that glial cells integrate homeostatic and circadian processes to drive sleep-wake cycles.

Journal: Nature neuroscience

Authors' code: Zenodo 3703108 (other-open), gangwug/MetaCycle (GPL), shaliulab/Single_Cell_Sleep (no license), vib-singlecell-nf/vsn-pipelines (GPL-3.0)

Status: code verified, 217 files readable, 8 matches

[30566] doi:10.1038/s41597-023-02421-7 [paper, repository]

Efficacy of MRI data harmonization in the age of machine learning: a multicenter study across 36 datasets.

Journal: Scientific data

Authors' code: Imaging-AI-for-Health-virtual-lab/harmonizer (other), chiaramarzi/fractalbrain-toolkit (other), rpomponio/neuroHarmonize (MIT)

Status: code verified, 32 files readable, 9 matches

[30567] doi:10.1038/s41598-024-52269-z [paper, repository]

Impaired motor inhibition during perceptual inhibition in older, but not younger adults: a psychophysiological study.

Journal: Scientific reports

Authors' code: bunpc/homer3 (BSD-2-Clause)

Status: code verified, 494 files readable, 4 matches

[30568] doi:10.1038/s41598-024-52433-5 [paper]

Prenatal cocaine exposure and its influence on pediatric epigenetic clocks and epigenetic scores in humans.

Journal: Scientific reports

Status: code on request

[30569] doi:10.1038/s42003-024-05781-x [paper, data]

Functionally-selective inhibition of threshold sodium currents and excitability in dorsal root ganglion neurons by cannabinol.

Journal: Communications biology

Status: data only, 1 dataset cited

[30570] doi:10.1038/s42003-024-05800-x [paper, repository]

Conflict detection and resolution in macaque frontal eye fields.

Journal: Communications biology

Authors' code: Zenodo 10326583 (CC-BY-4.0)

Status: code verified, 20 files readable, 2 matches

[30571] doi:10.1080/19490976.2024.2302310 [paper, repository]

Gut microbiota-driven metabolic alterations reveal gut-brain communication in Alzheimer's disease model mice.

Journal: Gut microbes

Authors' code: liyinhu/GM_network_modeling (GPL-3.0)

Status: code verified, 10 files readable

[30572] doi:10.1101/2024.01.23.576694 [paper, repository]

Encoding of task regularities links grid-like signals to human timing behavior

Journal: bioRxiv (preprint)

Authors' code: jazlab.org/resources (no license), OSF cs8d6 (no license)

Status: code verified, 1 file readable

[30573] doi:10.1111/mec.17270 [paper, repository]

Evolution of gene expression across brain regions in behaviourally divergent deer mice.

Journal: Molecular ecology

Authors' code: akautt/Pero_brain_RNAseq (no license), peromyscus.shinyapps.io/brain-rnaseq-atlas (no license)

Status: code verified, 5 files readable, 14 matches

[30574] doi:10.1161/jaha.123.033279 [paper, data]

Stroke Alters the Function of Enteric Neurons to Impair Smooth Muscle Relaxation and Dysregulates Gut Transit.

Journal: Journal of the American Heart Association

Status: data only, 1 dataset cited

[30575] doi:10.1161/strokeaha.123.044026 [paper, repository]

Screening of Moyamoya Disease From Retinal Photographs: Development and Validation of Deep Learning Algorithms.

Journal: Stroke

Authors' code: DigitalHealthcareLab/23moyamoya (no license)

Status: code verified, 2 files readable

[30576] doi:10.1172/jci.insight.162771 [paper, data]

Neuronal deletion of the circadian clock gene Bmal1 induces cell-autonomous dopaminergic neurodegeneration.

Journal: JCI insight

Status: data only, 1 dataset cited

[30577] doi:10.1186/s12885-024-11865-y [paper]

Association between psychiatric disorders and glioma risk: evidence from Mendelian randomization analysis.

Journal: BMC cancer

Status: code on request

[30578] doi:10.1186/s12888-024-05514-8 [paper, data]

Relationship between autism and brain cortex surface area: genetic correlation and a two-sample Mendelian randomization study.

Journal: BMC psychiatry

Status: data only, 1 dataset cited

[30579] doi:10.1186/s12929-024-01002-z [paper]

Plectin plays a role in the migration and volume regulation of astrocytes: a potential biomarker of glioblastoma.

Journal: Journal of biomedical science

Status: data only

[30580] doi:10.1186/s40035-024-00397-x [paper, data]

The interaction between ageing and Alzheimer's disease: insights from the hallmarks of ageing.

Journal: Translational neurodegeneration

Status: data only, 1 dataset cited

[30581] doi:10.3390/brainsci14020114 [paper, data]

Effects of Targeted Memory Reactivation on Cortical Networks.

Journal: Brain sciences

Status: data only, 1 dataset cited

[30582] doi:10.3390/cells13030204 [paper, data]

Prospective Approach to Deciphering the Impact of Intercellular Mitochondrial Transfer from Human Neural Stem Cells and Brain Tumor-Initiating Cells to Neighboring Astrocytes.

Journal: Cells

Status: data only, 1 dataset cited

[30583] doi:10.3390/metabo14020079 [paper, repository]

Optimized Mass Spectrometry Detection of Thyroid Hormones and Polar Metabolites in Rodent Cerebrospinal Fluid.

Journal: Metabolites

Authors' code: frozengas/kanareklabtracefinderrscripts (GPL-3.0)

Status: code verified, 5 files readable, 2 matches

Monday, 22 January 2024 (26 papers)

[30584] doi:10.1002/alz.13613 [paper, repository]

Common infections and neuroimaging markers of dementia in three UK cohort studies.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: beckigreen/infections-neuroimaging (MIT)

Status: code verified, 17 files readable, 4 matches

[30585] doi:10.1016/j.celrep.2024.113685 [paper]

Compartment-specific regulation of Na&lt;sub&gt;V&lt;/sub&gt;1.7 in sensory neurons after acute exposure to TNF-α.

Journal: Cell reports

Status: code on request

[30586] doi:10.1016/j.isci.2024.108960 [paper, data]

Oxytocin-induced birth causes sex-specific behavioral and brain connectivity changes in developing rat offspring.

Journal: iScience

Status: code on request, 1 dataset cited

[30587] doi:10.1038/s41398-024-02741-1 [paper, repository]

Multivariate patterns of brain functional connectome associated with COVID-19-related negative affect symptoms.

Journal: Translational psychiatry

Authors' code: OSF 2k4ex (no license)

Status: code verified, 2 files readable, 1 match

[30588] doi:10.1038/s41467-024-44900-4 [paper, repository]

Connectome-based reservoir computing with the conn2res toolbox.

Journal: Nature communications

Authors' code: netneurolab/conn2res (BSD-3-Clause), Zenodo 10437157 (CC-BY-4.0), openai/gym (MIT), neurogym/neurogym (Apache-2.0)

Status: code verified, 356 files readable, 8 matches

[30589] doi:10.1038/s41598-024-51612-8 [paper, repository]

Enhancing foveal avascular zone analysis for Alzheimer's diagnosis with AI segmentation and machine learning using multiple radiomic features.

Journal: Scientific reports

Authors' code: kskim-phd/Hybrid-FAZ (no license)

Status: code verified, 6 files readable

[30590] doi:10.1038/s41598-024-52205-1 [paper, repository]

Immersion in nature enhances neural indices of executive attention.

Journal: Scientific reports

Authors' code: OSF px4ev (no license)

Status: code verified, 4 files readable, 6 matches

[30591] doi:10.1038/s41598-024-52214-0 [paper, data]

Human amnion epithelial cell therapy reduces hypertension-induced vascular stiffening and cognitive impairment.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30592] doi:10.1038/s44319-023-00036-y [paper, data]

Nomo1 deficiency causes autism-like behavior in zebrafish.

Journal: EMBO reports

Status: data only, 1 dataset cited

[30593] doi:10.1038/s44319-024-00056-2 [paper, data]

Converging synaptic and network dysfunctions in distinct autoimmune encephalitis.

Journal: EMBO reports

Status: data only, 1 dataset cited

[30594] doi:10.1073/pnas.2310735121 [paper, repository]

Neuronal sensorimotor integration guiding salt concentration navigation in &lt;i&gt;Caenorhabditis elegans&lt;/i&gt;.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 23583705 (CC-BY-4.0)

Status: code verified, 29 files readable, 7 matches

[30595] doi:10.1080/07853890.2024.2304650 [paper, data]

Brain-Derived neurotrophic factor and inflammatory biomarkers are unaffected by acute and chronic intermittent hypoxic-hyperoxic exposure in geriatric patients: a randomized controlled trial.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[30596] doi:10.1093/braincomms/fcae015 [paper, repository]

A multiscale characterization of cortical shape asymmetries in early psychosis.

Journal: Brain communications

Authors' code: cyctbdbw/MAS_psychosis (CC-BY-4.0), reuter.mit.edu/software/shapedna (no license)

Status: code verified, 1 file readable

[30597] doi:10.1101/2024.01.21.576561 [paper, repository]

Alpha phase coding supports feature binding during working memory maintenance

Journal: bioRxiv (preprint)

Authors' code: comptelab/binding (no license), OSF s5mcy (no license), OSF 37hb6 (no license)

Status: code verified, 25 files readable, 11 matches

[30598] doi:10.1162/imag_a_00070 [paper, data]

Atypical hemispheric re-organization of the reading network in high-functioning adults with dyslexia: Evidence from representational similarity analysis.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[30599] doi:10.1162/imag_a_00072 [paper, repository]

Semantic composition in experimental and naturalistic paradigms.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 7c58j (no license)

Status: code verified, 6 files readable

[30600] doi:10.1186/s13059-023-03151-0 [paper, repository]

PICALO: principal interaction component analysis for the identification of discrete technical, cell-type, and environmental factors that mediate eQTLs.

Journal: Genome biology

Authors' code: molgenis/PICALO (BSD-3-Clause), Zenodo 8172196 (BSD-3-Clause)

Status: code verified, 141 files readable, 25 matches

[30601] doi:10.1523/eneuro.0245-23.2023 [paper, repository]

Chronic, Reusable, Multiday Neuropixels Recordings during Free-Moving Operant Behavior.

Journal: eNeuro

Authors' code: tne-lab/neuropixel-methodology-manuscript (no license)

Status: code verified, 11 files readable

[30602] doi:10.1523/eneuro.0326-23.2023 [paper, repository]

SimplyFire: An Open-Source, Customizable Software Application for the Analysis of Synaptic Events.

Journal: eNeuro

Authors' code: HaghighiLabBuck/SimplyFire (GPL-3.0)

Status: code verified, 47 files readable, 1 match

[30603] doi:10.21037/tp-23-596 [paper, data]

A ferroptosis-related ceRNA network for investigating the molecular mechanisms and the treatment of neonatal hypoxic-ischemic encephalopathy.

Journal: Translational pediatrics

Status: data only, 1 dataset cited

[30604] doi:10.2196/49467 [paper, data]

Design and Implementation of a Brief Digital Mindfulness and Compassion Training App for Health Care Professionals: Cluster Randomized Controlled Trial.

Journal: JMIR mental health

Status: data only, 1 dataset cited

[30605] doi:10.3389/fnhum.2023.1274817 [paper, repository]

A neural network underlying cognitive strategies related to eating, weight and body image concerns.

Journal: Frontiers in human neuroscience

Authors' code: alexsayal/fmriprep2BV (MIT)

Status: code verified, 9 files readable

[30606] doi:10.3389/fnhum.2023.1334742 [paper, repository]

Intracranial electrophysiology of spectrally degraded speech in the human cortex.

Journal: Frontiers in human neuroscience

Authors' code: ckovach/DBT (MIT)

Status: code verified, 21 files readable, 2 matches

[30607] doi:10.3389/fnhum.2024.1304311 [paper, data]

EEG and EMG dataset for the detection of errors introduced by an active orthosis device.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[30608] doi:10.3389/fnmol.2024.1334862 [paper, repository]

Aging differentially alters the transcriptome and landscape of chromatin accessibility in the male and female mouse hippocampus.

Journal: Frontiers in molecular neuroscience

Authors' code: vsbuffalo/scythe (MIT)

Status: code verified, 13 files readable

[30609] doi:10.3389/fphar.2024.1326779 [paper, data]

Pharmacological effects of monoterpene carveol on the neuromuscular system of nematodes and mammals.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

Sunday, 21 January 2024 (2 papers)

[30610] doi:10.3390/ijms25021299 [paper, data]

Network Analysis Performed on Transcriptomes of Parkinson's Disease Patients Reveals Dysfunction in Protein Translation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[30611] doi:10.3390/s24020678 [paper, repository]

A High-Resolution LED Stimulator for Steady-State Visual Stimulation: Customizable, Affordable, and Open Source.

Journal: Sensors (Basel, Switzerland)

Authors' code: Zenodo 10223153 (MIT)

Status: code verified, 9 files readable

Saturday, 20 January 2024 (11 papers)

[30612] doi:10.1016/j.isci.2024.108980 [paper]

Loss of functional <i>cryptochrome 1</i> reduces robustness of 24-hour behavioral rhythms in monarch butterflies.

Journal: iScience

Status: code on request

[30613] doi:10.1016/j.isci.2024.108981 [paper, repository]

Development of sensorimotor-visual connectome gradient at birth predicts neurocognitive outcomes at 2 years of age.

Journal: iScience

Authors' code: Zenodo 10431700 (CC-BY-4.0)

Status: code verified, 4 files readable, 2 matches

[30614] doi:10.1016/j.mcpro.2024.100723 [paper, data]

Multi-Omics Profiling Identifies Microglial Annexin A2 as a Key Mediator of NF-κB Pro-inflammatory Signaling in Ischemic Reperfusion Injury.

Journal: Molecular & cellular proteomics : MCP

Status: data only, 1 dataset cited

[30615] doi:10.1016/j.nicl.2024.103566 [paper, data]

Progressive lesion necrosis is related to increasing aphasia severity in chronic stroke.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[30616] doi:10.1038/s41398-024-02764-8 [paper, data]

Abnormal developmental of structural covariance networks in young adults with heavy cannabis use: a 3-year follow-up study.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[30617] doi:10.1038/s41467-023-44571-7 [paper, repository]

Ramping dynamics and theta oscillations reflect dissociable signatures during rule-guided human behavior.

Journal: Nature communications

Authors' code: JanWeber-neuro/Weber_iEEG_NatCommun (no license), Zenodo 10350101 (CC-BY-4.0)

Status: code verified, 182 files readable, 12 matches

[30618] doi:10.1038/s41467-024-44794-2 [paper, data]

Machine learning-based high-frequency neuronal spike reconstruction from low-frequency and low-sampling-rate recordings.

Journal: Nature communications

Status: data only, 1 dataset cited

[30619] doi:10.1038/s41467-024-44877-0 [paper, repository]

Distinguishing examples while building concepts in hippocampal and artificial networks.

Journal: Nature communications

Authors' code: zalandoresearch/fashion-mnist (MIT), louiskang-group/kang-2024-examples-concepts (GPL-3.0)

Status: code verified, 34 files readable, 12 matches

[30620] doi:10.1038/s41539-024-00216-y [paper, data]

Development of performance and learning rate evaluation models in robot-assisted surgery using electroencephalography and eye-tracking.

Journal: NPJ science of learning

Status: data only, 2 datasets cited

[30621] doi:10.1186/s13024-023-00699-0 [paper, data]

Unravelling cell type-specific responses to Parkinson's Disease at single cell resolution.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[30622] doi:10.7759/cureus.52637 [paper, data]

Reliability of Spectral Features of Resting-State Brain Activity: A Magnetoencephalography Study.

Journal: Cureus

Status: data only, 1 dataset cited

Friday, 19 January 2024 (29 papers)

[30623] doi:10.1007/s12035-024-03944-9 [paper, data]

Selective Reduction of Ca²⁺ Entry Through the Human NMDA Receptor: a Quantitative Study by Simultaneous Ca²⁺ and Na⁺ Imaging.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[30624] doi:10.1016/j.celrep.2024.113691 [paper, repository]

Spatial transcriptomic patterns underlying amyloid-β and tau pathology are associated with cognitive dysfunction in Alzheimer's disease.

Journal: Cell reports

Authors' code: BMHLab/AHBAprocessing (no license)

Status: code verified, 386 files readable, 2 matches

[30625] doi:10.1016/j.celrep.2024.113695 [paper]

Neural population dynamics reveals disruption of spinal circuits' responses to proprioceptive input during electrical stimulation of sensory afferents.

Journal: Cell reports

Status: code on request

[30626] doi:10.1016/j.dcn.2024.101346 [paper, repository]

Development of the triadic neural systems involved in risky decision-making during childhood.

Journal: Developmental cognitive neuroscience

Authors' code: QinBrainLab/2023_Children_BART (no license)

Status: code verified, 92 files readable, 6 matches

[30627] doi:10.1016/j.isci.2024.108821 [paper]

Glutamate-specific gene linked to human brain evolution enhances synaptic plasticity and cognitive processes.

Journal: iScience

Status: code on request

[30628] doi:10.1016/j.isci.2024.108923 [paper]

Evaluation of cerebrovascular reactivity in moyamoya disease using oxygen-dependent magnetic resonance imaging.

Journal: iScience

Status: code on request

[30629] doi:10.1016/j.isci.2024.108971 [paper]

Involvement of the kisspeptin system in regulation of sexual behaviors in medaka.

Journal: iScience

Status: code on request

[30630] doi:10.1016/j.neuron.2023.12.013 [paper, repository]

Functional specificity of recurrent inhibition in visual cortex.

Journal: Neuron

Authors' code: Zenodo 10404664 (CC-BY-4.0), Zenodo 10404603 (CC-BY-4.0), znamensk/RegisterStack (GPL-3.0), Zenodo 10404602 (CC-BY-4.0), znamensk/ast_model (MIT)

Status: code verified, 45 files readable, 1 match

[30631] doi:10.1038/s41398-024-02773-7 [paper]

A transcriptomic analysis in mice following a single dose of ibogaine identifies new potential therapeutic targets.

Journal: Translational psychiatry

Status: code on request

[30632] doi:10.1038/s41467-024-44842-x [paper, repository]

Genetic architecture distinguishes tinnitus from hearing loss.

Journal: Nature communications

Authors' code: nievergeltlab/Tinnitus (no license)

Status: code verified, 42 files readable, 20 matches

[30633] doi:10.1038/s41467-024-44870-7 [paper, repository]

Neural representations of situations and mental states are composed of sums of representations of the actions they afford.

Journal: Nature communications

Authors' code: OSF qwd2k (no license), PrincetonUniversity/prsonpipe (no license)

Status: code verified, 30 files readable, 8 matches

[30634] doi:10.1038/s41467-024-44898-9 [paper, repository]

Dual electrical stimulation at spinal-muscular interface reconstructs spinal sensorimotor circuits after spinal cord injury.

Journal: Nature communications

Authors' code: OSF 3mg8c (no license)

Status: code verified, 1 file readable

[30635] doi:10.1038/s41562-023-01799-z [paper, repository]

A generative model of memory construction and consolidation.

Journal: Nature human behaviour

Authors' code: ellie-as/generative-memory (no license)

Status: code verified, 22 files readable, 11 matches

[30636] doi:10.1038/s41593-023-01551-w [paper, repository]

Dynamic and selective engrams emerge with memory consolidation.

Journal: Nature neuroscience

Authors' code: Zenodo 10251086 (CC-BY-4.0), douglastome/dynamic-engrams (GPL-3.0)

Status: code verified, 68 files readable, 14 matches

[30637] doi:10.1038/s41597-024-02908-x [paper, repository]

Annotated dataset for training deep learning models to detect astrocytes in human brain tissue.

Journal: Scientific data

Authors' code: jsbroks/coco-annotator (MIT), qbeer/coco-froc-analysis (MIT)

Status: code verified, 109 files readable, 1 match

[30638] doi:10.1038/s42003-024-05792-8 [paper, data]

Neural and behavioral evidence for oxytocin's facilitatory effects on learning in volatile and stable environments.

Journal: Communications biology

Status: data only, 1 dataset cited

[30639] doi:10.1038/s44319-023-00048-8 [paper, data]

Glucose-derived glutamate drives neuronal terminal differentiation in vitro.

Journal: EMBO reports

Status: data only, 1 dataset cited

[30640] doi:10.1073/pnas.2313048121 [paper, repository]

Efficient mapping of the thalamocortical monosynaptic connectivity in vivo by tangential insertions of high-density electrodes in the cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: AllenInstitute/ecephys_spike_sorting (BSD-2-Clause)

Status: code verified, 116 files readable, 4 matches

[30641] doi:10.1371/journal.pcbi.1011771 [paper, repository]

Identifying essential factors for energy-efficient walking control across a wide range of velocities in reflex-based musculoskeletal systems.

Journal: PLoS computational biology

Authors' code: Shunsuke-KK/reflex_plos_revision (no license)

Status: code verified, 46 files readable, 6 matches

[30642] doi:10.1371/journal.pcbi.1011784 [paper, repository]

Revealing and reshaping attractor dynamics in large networks of cortical neurons.

Journal: PLoS computational biology

Authors' code: Chen-Beer/Beer-Barak-2023 (no license)

Status: code verified, 34 files readable

[30643] doi:10.1371/journal.pcbi.1011818 [paper, repository]

Functional hierarchies in brain dynamics characterized by signal reversibility in ferret cortex.

Journal: PLoS computational biology

Authors' code: SebastianIdesis/Hierarchy_Ferrets-2023- (no license)

Status: code verified, 7 files readable

[30644] doi:10.1371/journal.pone.0295148 [paper, data]

Neural correlates of word processing influenced by painful primes.

Journal: PloS one

Status: data only, 1 dataset cited

[30645] doi:10.1371/journal.pone.0296385 [paper, repository]

TenseMusic: An automatic prediction model for musical tension.

Journal: PloS one

Authors' code: vivienbarchet/TenseMusic (no license), OSF zspuw (no license)

Status: code verified, 10 files readable, 6 matches

[30646] doi:10.1371/journal.pone.0296722 [paper, repository]

AMDDLmodel: Android smartphones malware detection using deep learning model.

Journal: PloS one

Authors' code: kaggle.com/code/vishnu0399 (no license), iamshaf/malware_detection (no license)

Status: code verified, 1 file readable, 1 match

[30647] doi:10.1371/journal.pone.0297148 [paper, data]

Neural processing of prototypicality and simplicity of product design in forming design preferences.

Journal: PloS one

Status: data only, 1 dataset cited

[30648] doi:10.3390/ijms25021240 [paper, data]

Uncovering Novel Extracellular Matrix Transcriptome Alterations in Lesions of Multiple Sclerosis.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[30649] doi:10.3390/vision8010002 [paper, repository]

No Evidence of Cross-Orientation Suppression Differences in Migraine with Aura Compared to Healthy Controls.

Journal: Vision (Basel, Switzerland)

Authors' code: OSF 4ycju (no license)

Status: code verified, 8 files readable, 6 matches

[30650] doi:10.7554/elife.89095 [paper, repository]

Implications of variable synaptic weights for rate and temporal coding of cerebellar outputs.

Journal: eLife

Authors' code: asemptote/PC-DCN-different-size-inputs (MIT)

Status: code verified, 9 files readable, 1 match

[30651] doi:10.7554/elife.91475 [paper, data]

Acetylcholine modulates the precision of prediction error in the auditory cortex.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 18 January 2024 (25 papers)

[30652] doi:10.1016/j.dib.2024.110062 [paper, data]

Dataset for: Autoantibody profiles in patients with immune checkpoint inhibitor-induced neurological immune-related adverse events.

Journal: Data in brief

Status: data only, 2 datasets cited

[30653] doi:10.1016/j.isci.2024.108949 [paper, data]

Enhanced long-term memory and increased mushroom body plasticity in <i>Heliconius</i> butterflies.

Journal: iScience

Status: code on request, 1 dataset cited

[30654] doi:10.1016/j.isci.2024.108950 [paper]

TBX15 facilitates malignant progression of glioma by transcriptional activation of TXDNC5.

Journal: iScience

Status: code on request

[30655] doi:10.1016/j.isci.2024.108951 [paper, data]

The dual facilitatory and inhibitory effects of social pain on physical pain perception.

Journal: iScience

Status: code on request, 1 dataset cited

[30656] doi:10.1016/j.stemcr.2023.12.007 [paper]

Mutations in FUS lead to synaptic dysregulation in ALS-iPSC derived neurons.

Journal: Stem cell reports

Status: code on request

[30657] doi:10.1038/s41398-023-02678-x [paper, data]

Gatad2b, associated with the neurodevelopmental syndrome GAND, plays a critical role in neurodevelopment and cortical patterning.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[30658] doi:10.1038/s41467-023-44465-8 [paper, data]

Death Induced by Survival gene Elimination (DISE) correlates with neurotoxicity in Alzheimer's disease and aging.

Journal: Nature communications

Status: data only, 1 dataset cited

[30659] doi:10.1038/s41467-024-44851-w [paper, repository]

A presynaptic source drives differing levels of surround suppression in two mouse retinal ganglion cell types.

Journal: Nature communications

Authors' code: davidswygart/T6_NEURON_python (no license), Schwartz-AlaLaurila-Labs/sa-labs-extension (no license), SchwartzNU/SymphonyAnalysis (no license), davidswygart/rgc_bipolar_dog (no license)

Status: code verified, 1,033 files readable, 7 matches

[30660] doi:10.1038/s41467-024-44853-8 [paper, data]

Acetylcholine receptor based chemogenetics engineered for neuronal inhibition and seizure control assessed in mice.

Journal: Nature communications

Status: data only, 2 datasets cited

[30661] doi:10.1038/s41593-023-01548-5 [paper, repository]

Microglia regulate sleep through calcium-dependent modulation of norepinephrine transmission.

Journal: Nature neuroscience

Authors' code: supp:PMC10849959/41593_2023_1548_MOESM3_ESM.m (no license), supp:PMC10849959/41593_2023_1548_MOESM4_ESM.m (no license), supp:PMC10849959/41593_2023_1548_MOESM5_ESM.m (no license), supp:PMC10849959/41593_2023_1548_MOESM6_ESM.m (no license), supp:PMC10849959/41593_2023_1548_MOESM7_ESM.m (no license), supp:PMC10849959/41593_2023_1548_MOESM8_ESM.m (no license), supp:PMC10849959/41593_2023_1548_MOESM9_ESM.m (no license), supp:PMC10849959/41593_2023_1548_MOESM10_ESM.m (no license)

Status: code verified, 8 files readable

[30662] doi:10.1038/s41593-023-01554-7 [paper, repository]

A ubiquitous spectrolaminar motif of local field potential power across the primate cortex.

Journal: Nature neuroscience

Authors' code: doi:10.5061/dryad.9w0vt4bnp (no license)

Status: code verified

[30663] doi:10.1038/s41597-024-02943-8 [paper, repository]

Dataset of human-single neuron activity during a Sternberg working memory task.

Journal: Scientific data

Authors' code: rutishauserlab/workingmem-release-NWB (BSD-3-Clause)

Status: code verified, 32 files readable, 16 matches

[30664] doi:10.1038/s41598-024-51617-3 [paper, repository]

Brain control of bimanual movement enabled by recurrent neural networks.

Journal: Scientific reports

Authors' code: fwillett/cvVectorStats (MIT), machenslab/dPCA (MIT)

Status: code verified, 46 files readable, 8 matches

[30665] doi:10.1093/braincomms/fcae013 [paper, repository]

&lt;i&gt;In vivo&lt;/i&gt; calcium imaging shows that satellite glial cells have increased activity in painful states.

Journal: Brain communications

Authors' code: OSF jg5zr (no license)

Status: empty repository

[30666] doi:10.1371/journal.pbio.3002375 [paper, repository]

Human subcortical pathways automatically detect collision trajectory without attention and awareness.

Journal: PLoS biology

Authors' code: OSF gdjwh (no license), Zenodo 8251435 (CC-BY-4.0)

Status: code verified, 18 files readable, 6 matches

[30667] doi:10.1371/journal.pgen.1011054 [paper, data]

Failure to mate enhances investment in behaviors that may promote mating reward and impairs the ability to cope with stressors via a subpopulation of Neuropeptide F receptor neurons.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[30668] doi:10.1371/journal.pone.0286125 [paper, data]

Multimodal brain tumor image segmentation based on DenseNet.

Journal: PloS one

Status: data only, 2 datasets cited

[30669] doi:10.1371/journal.pone.0291995 [paper, data]

Large-scale gene expression changes in APP/PSEN1 and GFAP mutation models exhibit high congruence with Alzheimer's disease.

Journal: PloS one

Status: data only, 2 datasets cited

[30670] doi:10.2147/jir.s438205 [paper]

New Insights into Roles of IL-7R Gene as a Therapeutic Target Following Intracerebral Hemorrhage.

Journal: Journal of inflammation research

Status: data only

[30671] doi:10.3389/fncel.2023.1325114 [paper, data]

MicroRNA profile of extracellular vesicles released by Müller glial cells.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[30672] doi:10.3389/fnins.2023.1268860 [paper, repository]

Multiple sclerosis clinical forms classification with graph convolutional networks based on brain morphological connectivity.

Journal: Frontiers in neuroscience

Authors' code: gitlab.in2p3.fr/thomas.grenier/msgcn-classification (no license)

Status: code verified, 4 files readable

[30673] doi:10.3389/fradi.2023.1327075 [paper, repository]

High resolution and contrast 7 tesla MR brain imaging of the neonate.

Journal: Frontiers in radiology

Authors' code: BioMedIA/dhcp-structural-pipeline (Apache-2.0)

Status: code verified, 1,250 files readable, 1 match

[30674] doi:10.3389/fradi.2023.1336902 [paper, data]

Using a generative adversarial network to generate synthetic MRI images for multi-class automatic segmentation of brain tumors.

Journal: Frontiers in radiology

Status: data only, 1 dataset cited

[30675] doi:10.3390/brainsci14010094 [paper, repository]

Brain Frontal-Lobe Misery Perfusion in COVID-19 ICU Survivors: An MRI Pilot Study.

Journal: Brain sciences

Authors' code: NeuroFunctionLab/aTRUPC_processing (AGPL-3.0)

Status: code verified, 32 files readable, 9 matches

[30676] doi:10.7554/elife.86797 [paper, data]

What happens to the inhibitory control functions of the right inferior frontal cortex when this area is dominant for language?

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 17 January 2024 (42 papers, 12 on this page)

[30677] doi:10.1002/acn3.51967 [paper, data]

The neural correlates of topographical disorientation-a lesion analysis study.

Journal: Annals of clinical and translational neurology

Status: data only, 1 dataset cited

[30678] doi:10.1002/acn3.51989 [paper, data]

Resting-state fMRI functional connectome of C9orf72 mutation status.

Journal: Annals of clinical and translational neurology

Status: data only, 2 datasets cited

[30679] doi:10.1016/j.celrep.2024.113674 [paper]

Sympathetic NPY controls glucose homeostasis, cold tolerance, and cardiovascular functions in mice.

Journal: Cell reports

Status: code on request

[30680] doi:10.1016/j.dcn.2024.101345 [paper, repository]

Multimodal neuroimaging correlates of physical-cognitive covariation in Chilean adolescents. The Cogni-Action Project.

Journal: Developmental cognitive neuroscience

Authors' code: andersonwinkler/PermCCA (GPL-3.0)

Status: code verified, 9 files readable

[30681] doi:10.1016/j.isci.2024.108932 [paper]

Serum amyloid A and mitochondrial DNA in extracellular vesicles are novel markers for detecting traumatic brain injury in a mouse model.

Journal: iScience

Status: code on request

[30682] doi:10.1016/j.isci.2024.108933 [paper, data]

Cullin-RING E3 ubiquitin ligase 4 regulates neurite morphogenesis during neurodevelopment.

Journal: iScience

Status: code on request, 2 datasets cited

[30683] doi:10.1016/j.isci.2024.108954 [paper, repository]

Adolescents' pain-related ontogeny shares a neural basis with adults' chronic pain in basothalamo-cortical organization.

Journal: iScience

Authors' code: Zenodo 6554137 (other-open), strohkamp/imps_imagen (CC0-1.0)

Status: code verified, 6 files readable, 4 matches

[30684] doi:10.1016/j.isci.2024.108963 [paper, repository]

Encoded and updated spatial working memories share a common representational format in alpha activity.

Journal: iScience

Authors' code: OSF rvz39 (no license)

Status: code verified, 3 files readable, 2 matches

[30685] doi:10.1016/j.stem.2023.12.012 [paper, repository]

SARS-CoV-2 infection causes dopaminergic neuron senescence.

Journal: Cell stem cell

Authors' code: Zenodo 10373669 (CC-BY-4.0), shuibingchen/da_neuron_code (no license)

Status: code verified, 20 files readable, 2 matches

[30686] doi:10.1038/s41380-023-02391-7 [paper, repository]

High-resolution tracking of unconfined zebrafish behavior reveals stimulatory and anxiolytic effects of psilocybin.

Journal: Molecular psychiatry

Authors' code: pypi.org/project/pyqt5 (no license), photutils.readthedocs.io (no license), jupyterlab.readthedocs.io (no license)

Status: code verified

[30687] doi:10.1038/s41467-023-43727-9 [paper, repository]

Flexible, scalable, high channel count stereo-electrode for recording in the human brain.

Journal: Nature communications

Authors' code: Center-For-Neurotechnology/MicrosEEG_Data_Analysis (no license), drasros/bs_detector_icueeg (no license), jiaxx/waveform_classification (no license), Zenodo 10042080 (CC-BY-4.0)

Status: code verified, 12 files readable

[30688] doi:10.1038/s41467-023-44264-1 [paper, data]

High-content screening identifies a small molecule that restores AP-4-dependent protein trafficking in neuronal models of AP-4-associated hereditary spastic paraplegia.

Journal: Nature communications

Status: data only, 2 datasets cited

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