Every paper, by date: page 157

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 157 of 200: 12 July 2023 to 1 July 2023.

Wednesday, 12 July 2023 (24 papers, 13 on this page)

[34945] doi:10.1038/s41597-023-02358-x [paper, repository]

A dataset on energy efficiency grade of white goods in mainland China at regional and household levels.

Journal: Scientific data

Authors' code: CEEGDataset/CEEG-Dataset (no license)

Status: code verified, 3 files readable, 1 match

[34946] doi:10.1038/s41597-023-02365-y [paper, repository]

Patient-derived glioblastoma cell lines with conserved genome profiles of the original tissue.

Journal: Scientific data

Authors' code: mario2437/braintumor_scientificdata (no license)

Status: dead link

[34947] doi:10.1038/s42003-023-05090-9 [paper]

A prolonged stress rat model recapitulates some PTSD-like changes in sleep and neuronal connectivity.

Journal: Communications biology

Status: code on request

[34948] doi:10.1073/pnas.2304602120 [paper, data]

Structures and membrane interactions of native serotonin transporter in complexes with psychostimulants.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 5 datasets cited

[34949] doi:10.1093/braincomms/fcad200 [paper, data]

Associations between sleep health and grey matter volume in the UK Biobank cohort (<i>n</i> = 33 356).

Journal: Brain communications

Status: data only, 3 datasets cited

[34950] doi:10.1098/rsif.2023.0050 [paper, repository]

Astrocyte endfeet may theoretically act as valves to convert pressure oscillations to glymphatic flow.

Journal: Journal of the Royal Society, Interface

Authors' code: doi:10.6084/m9.figshare.c.6728313 (no license)

Status: code found, still to be checked

[34951] doi:10.1101/2023.07.11.548492 [paper, data]

Effects of noise and metabolic cost on cortical task representations

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[34952] doi:10.1186/s13024-023-00625-4 [paper, data]

ACSS2-dependent histone acetylation improves cognition in mouse model of Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[34953] doi:10.1186/s13195-023-01242-5 [paper, data]

Longitudinal APOE4- and amyloid-dependent changes in the blood transcriptome in cognitively intact older adults.

Journal: Alzheimer's research & therapy

Status: data only, 3 datasets cited

[34954] doi:10.1371/journal.pone.0288399 [paper, data]

Corneal confocal microscopy demonstrates sensory nerve loss in children with autism spectrum disorder.

Journal: PloS one

Status: data only, 1 dataset cited

[34955] doi:10.3390/brainsci13071063 [paper, data]

Could Vulnerability to Motion Sickness and Chronic Pain Coexist within a Sensorimotor Phenotype? Insights from over 500 Pre-Pain Motion Sickness Reports.

Journal: Brain sciences

Status: data only, 1 dataset cited

[34956] doi:10.7554/elife.79450 [paper, repository]

Rate-distortion theory of neural coding and its implications for working memory.

Journal: eLife

Authors' code: amvjakob/wm-rate-distortion (no license), comptelab/interplayPFC (GPL-3.0)

Status: code verified, 53 files readable, 3 matches

[34957] doi:10.7554/elife.81830 [paper, repository]

Neuronal glutamate transporters control reciprocal inhibition and gain modulation in D1 medium spiny neurons.

Journal: eLife

Authors' code: scimemia/EAAC1-lateral-inhibition (no license)

Status: empty repository, 1 file readable

Tuesday, 11 July 2023 (40 papers)

[34958] doi:10.1002/mdc3.13825 [paper]

The Role of Levodopa Challenge in Predicting the Outcome of Subthalamic Deep Brain Stimulation.

Journal: Movement disorders clinical practice

Status: code on request

[34959] doi:10.1016/j.celrep.2023.112717 [paper]

Muscle-building supplement β-hydroxy β-methylbutyrate binds to PPARα to improve hippocampal functions in mice.

Journal: Cell reports

Status: code on request

[34960] doi:10.1016/j.celrep.2023.112785 [paper]

Multi-transcriptomics reveals brain cellular responses to peripheral infection in Alzheimer's disease model mice.

Journal: Cell reports

Status: code on request

[34961] doi:10.1016/j.heliyon.2023.e17877 [paper, repository]

Unlocking the musical brain: A proof-of-concept study on playing the piano in MRI scanner with naturalistic stimuli.

Journal: Heliyon

Authors' code: OSF 4rkxu (no license)

Status: code verified

[34962] doi:10.1016/j.isci.2023.107301 [paper]

The indirect corticopontine pathway relays perioral sensory signals to the cerebellum via the mesodiencephalic junction.

Journal: iScience

Status: code on request

[34963] doi:10.1016/j.isci.2023.107329 [paper, repository]

Investigating microglia-neuron crosstalk by characterizing microglial contamination in human and mouse patch-seq datasets.

Journal: iScience

Authors' code: keon-arbabi/patch-seq-microglia (no license)

Status: code verified, 10 files readable, 21 matches

[34964] doi:10.1016/j.isci.2023.107333 [paper]

PAK1 contributes to cerebral ischemia/reperfusion injury by regulating the blood-brain barrier integrity.

Journal: iScience

Status: code on request

[34965] doi:10.1016/j.isci.2023.107342 [paper, repository]

<i>sox1a:eGFP</i> transgenic line and single-cell transcriptomics reveal the origin of zebrafish intraspinal serotonergic neurons.

Journal: iScience

Authors' code: Fushun-Chen/Sox1a_scRNA (no license)

Status: code verified, 8 files readable, 14 matches

[34966] doi:10.1016/j.nbas.2023.100085 [paper, data]

Short-term blood pressure variability is inversely related to regional amplitude of low frequency fluctuations in older and younger adults.

Journal: Aging brain

Status: data only, 1 dataset cited

[34967] doi:10.1016/j.neuroimage.2023.120252 [paper, repository]

Real-time, model-based magnetic field correction for moving, wearable MEG.

Journal: NeuroImage

Authors' code: stephaniemellor/OPMEGfeedback (GPL-2.0)

Status: code verified, 10 files readable, 7 matches

[34968] doi:10.1016/j.nicl.2023.103469 [paper, repository]

Vestibular loss disrupts visual reactivity in the alpha EEG rhythm.

Journal: NeuroImage. Clinical

Authors' code: Mensen/ept_TFCE-matlab (no license)

Status: code verified, 49 files readable, 1 match

[34969] doi:10.1016/j.nicl.2023.103470 [paper, repository]

Reliability and validity of DTI-based indirect disconnection measures.

Journal: NeuroImage. Clinical

Authors' code: UMCU-RIBS/simDTI (no license)

Status: empty repository, 1 file readable

[34970] doi:10.1016/j.nicl.2023.103471 [paper, repository]

Structural and microstructural thalamocortical network disruption in sporadic behavioural variant frontotemporal dementia.

Journal: NeuroImage. Clinical

Authors' code: djakabek/multimodal (GPL-3.0)

Status: code verified, 5 files readable, 3 matches

[34971] doi:10.1016/j.xpro.2023.102414 [paper, repository]

A protocol to investigate neural coupling of brain oscillations in rodents using in vivo electrophysiological recordings.

Journal: STAR protocols

Authors' code: vaniacong/neural_coupling (no license)

Status: code verified, 5 files readable, 7 matches

[34972] doi:10.1016/j.xpro.2023.102432 [paper, data]

A histological protocol for quantifying the birthrates of specific subtypes of olfactory sensory neurons in mice.

Journal: STAR protocols

Status: data only, 1 dataset cited

[34973] doi:10.1021/acsomega.3c02664 [paper, data]

Structural Conformation and Activity of Spider-Derived Inhibitory Cystine Knot Peptide Pn3a Are Modulated by pH.

Journal: ACS omega

Status: data only, 2 datasets cited

[34974] doi:10.1038/s41398-023-02526-y [paper]

Functional changes in neural mechanisms underlying post-traumatic stress disorder in World Trade Center responders.

Journal: Translational psychiatry

Status: code on request

[34975] doi:10.1038/s41398-023-02546-8 [paper, repository]

Cortical structural and functional coupling during development and implications for attention deficit hyperactivity disorder.

Journal: Translational psychiatry

Authors' code: shaniasoman/sc_consistency-based_thresholding (no license), shaniasoman/sc_fc_coupling (no license)

Status: code verified, 2 files readable, 1 match

[34976] doi:10.1038/s41467-023-39447-9 [paper, repository]

Spatial Transcriptomics-correlated Electron Microscopy maps transcriptional and ultrastructural responses to brain injury.

Journal: Nature communications

Authors' code: ISD-SystemsNeuroscience/STcEM (no license)

Status: code verified, 7 files readable, 8 matches

[34977] doi:10.1038/s41467-023-39645-5 [paper, data]

Gain and loss of function variants in EZH1 disrupt neurogenesis and cause dominant and recessive neurodevelopmental disorders.

Journal: Nature communications

Status: data only, 5 datasets cited

[34978] doi:10.1038/s41467-023-39805-7 [paper, data]

Synaptotagmin-1-dependent phasic axonal dopamine release is dispensable for basic motor behaviors in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[34979] doi:10.1038/s41467-023-39860-0 [paper, repository]

Large depth-of-field ultra-compact microscope by progressive optimization and deep learning.

Journal: Nature communications

Authors' code: Zenodo 7953526 (other-open), yuanlong-o/mobilephone_EDOF (GPL-2.0), songxf1011/mobilephone_edof (GPL-2.0)

Status: code verified, 90 files readable, 4 matches

[34980] doi:10.1038/s41598-023-38186-7 [paper, repository]

Extended performance analysis of deep-learning algorithms for mice vocalization segmentation.

Journal: Scientific reports

Authors' code: OSF 8sgkh (no license)

Status: code verified, 7 files readable

[34981] doi:10.1038/s41598-023-38423-z [paper, data]

Mice prenatally exposed to valproic acid do not show autism-related disorders when fed with polyunsaturated fatty acid-enriched diets.

Journal: Scientific reports

Status: data only, 1 dataset cited

[34982] doi:10.1093/ofid/ofad356 [paper, data]

Stillbirths and Neonatal Deaths Caused by Group B <i>Streptococcus</i> in Africa and South Asia Identified Through Child Health and Mortality Prevention Surveillance (CHAMPS).

Journal: Open forum infectious diseases

Status: data only, 2 datasets cited

[34983] doi:10.1186/s12916-023-02916-5 [paper, data]

Expression of the endocannabinoid system and response to cannabinoid components by the human fetal testis.

Journal: BMC medicine

Status: data only, 1 dataset cited

[34984] doi:10.1186/s13059-023-02989-8 [paper, repository]

CMOT: Cross-Modality Optimal Transport for multimodal inference.

Journal: Genome biology

Authors' code: daifengwanglab/CMOT (GPL-3.0), cantinilab/ot-scomics (GPL-3.0), docs.scvi-tools.org/en/stable (no license)

Status: code verified, 39 files readable, 7 matches

[34985] doi:10.1186/s13059-023-03004-w [paper, repository]

Mapping genetic variants for nonsense-mediated mRNA decay regulation across human tissues.

Journal: Genome biology

Authors' code: OSF hts7w (no license)

Status: code verified

[34986] doi:10.1371/journal.pone.0287958 [paper, data]

Human-robot collaborative task planning using anticipatory brain responses.

Journal: PloS one

Status: data only, 1 dataset cited

[34987] doi:10.15252/embj.2022111719 [paper]

Loss of TDP-43 oligomerization or RNA binding elicits distinct aggregation patterns.

Journal: The EMBO journal

Status: data only

[34988] doi:10.3389/fcimb.2023.1231541 [paper, data]

Alteration and clinical potential in gut microbiota in patients with cerebral small vessel disease.

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

[34989] doi:10.3389/fncom.2023.1209372 [paper, repository]

Functional extreme learning machine.

Journal: Frontiers in computational neuroscience

Authors' code: csie.ntu.edu.tw/cjlin/libsvm (no license), cis.hut.fi/projects/tsp (no license)

Status: code verified

[34990] doi:10.3389/fnhum.2023.1134012 [paper, repository]

Manifold learning for fMRI time-varying functional connectivity.

Journal: Frontiers in human neuroscience

Authors' code: nimh-sfim/manifold_learning_fmri (no license)

Status: code verified, 48 files readable, 22 matches

[34991] doi:10.3389/fnhum.2023.1223307 [paper, data]

Statistically significant features improve binary and multiple Motor Imagery task predictions from EEGs.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[34992] doi:10.3390/bioengineering10070827 [paper, repository]

ECG Recordings as Predictors of Very Early Autism Likelihood: A Machine Learning Approach.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: lina-usc/ECG-ASD-Likelihood-Classification (no license)

Status: code verified, 3 files readable, 1 match

[34993] doi:10.3390/s23146296 [paper, repository]

A Dynamical Systems Approach to Characterizing Brain-Body Interactions during Movement: Challenges, Interpretations, and Recommendations.

Journal: Sensors (Basel, Switzerland)

Authors' code: uncg-kines/bbi-review-2023 (GPL-3.0)

Status: code verified, 20 files readable, 5 matches

[34994] doi:10.3390/s23146304 [paper, repository]

Familiarization with Mixed Reality for Individuals with Autism Spectrum Disorder: An Eye Tracking Study.

Journal: Sensors (Basel, Switzerland)

Authors' code: AR-Eye-Tracking-Toolkit (no license)

Status: code verified

[34995] doi:10.7554/elife.83957 [paper, repository]

Dopamine signaling regulates predator-driven changes in <i>Caenorhabditis elegans'</i> egg laying behavior.

Journal: eLife

Authors' code: shreklab/PribadiEtAl2023 (no license)

Status: code verified, 71 files readable, 4 matches

[34996] doi:10.7554/elife.85316 [paper, data]

<i>SNORD90</i> induces glutamatergic signaling following treatment with monoaminergic antidepressants.

Journal: eLife

Status: data only, 1 dataset cited

[34997] doi:10.7554/elife.85550 [paper, repository]

Sharing neurophysiology data from the Allen Brain Observatory.

Journal: eLife

Authors' code: alleninstitute/allensdk (BSD-2-Clause), AllenInstitute/visual_coding_2p_analysis (BSD-2-Clause), AllenInstitute/neuropixels_platform_paper (BSD-2-Clause)

Status: code verified, 1,109 files readable, 3 matches

Monday, 10 July 2023 (27 papers)

[34998] doi:10.1016/j.ebiom.2023.104701 [paper, repository]

B cell depletion therapy does not resolve chronic active multiple sclerosis lesions.

Journal: EBioMedicine

Authors' code: cailab-tamu/scTenifoldNet (GPL), AbsintaLab/EBIOM23 (no license)

Status: code verified, 35 files readable, 3 matches

[34999] doi:10.1016/j.isci.2023.107314 [paper, repository]

Sleep-related motor skill consolidation and generalizability after physical practice, motor imagery, and action observation.

Journal: iScience

Authors' code: arnaudboutin/Spindle-detection (no license), arnaudboutin/Spindle-clustering (no license)

Status: code verified, 24 files readable, 4 matches

[35000] doi:10.1038/s41467-023-39722-9 [paper, data]

Combined multidimensional single-cell protein and RNA profiling dissects the cellular and functional heterogeneity of thymic epithelial cells.

Journal: Nature communications

Status: data only, 1 dataset cited

[35001] doi:10.1038/s41536-023-00311-5 [paper, data]

Nerve growth factor receptor (Ngfr) induces neurogenic plasticity by suppressing reactive astroglial Lcn2/Slc22a17 signaling in Alzheimer's disease.

Journal: NPJ Regenerative medicine

Status: code on request, 3 datasets cited

[35002] doi:10.1038/s41565-023-01419-x [paper, repository]

Adeno-associated viral vectors for functional intravenous gene transfer throughout the non-human primate brain.

Journal: Nature nanotechnology

Authors' code: GradinaruLab/protfarm (BSD-3-Clause), GradinaruLab/mCREATE (BSD-3-Clause), GradinaruLab/CAP-Mac (no license), Zenodo 8040857 (other-open)

Status: code verified, 54 files readable, 7 matches

[35003] doi:10.1038/s41592-023-01936-6 [paper, repository]

Dense 4D nanoscale reconstruction of living brain tissue.

Journal: Nature methods

Authors' code: CSBDeep/CSBDeep (BSD-3-Clause), juglab/n2v (BSD-3-Clause), zudi-lin/waterz (no license), danzllab/LIONESS (MIT)

Status: code verified, 137 files readable, 2 matches

[35004] doi:10.1038/s41593-023-01377-6 [paper, data]

Heart failure-induced cognitive dysfunction is mediated by intracellular Ca&lt;sup&gt;2+&lt;/sup&gt; leak through ryanodine receptor type 2.

Journal: Nature neuroscience

Status: data only, 2 datasets cited

[35005] doi:10.1038/s41593-023-01381-w [paper, repository]

How coupled slow oscillations, spindles and ripples coordinate neuronal processing and communication during human sleep.

Journal: Nature neuroscience

Authors' code: OSF 8kevm (no license)

Status: code verified, 17 files readable, 1 match

[35006] doi:10.1038/s42003-023-05073-w [paper, repository]

Intermediately synchronised brain states optimise trade-off between subject specificity and predictive capacity.

Journal: Communications biology

Authors' code: juaml/etspredict (GPL-3.0), jugit.fz-juelich.de/inm7/public (no license)

Status: code verified, 83 files readable, 12 matches

[35007] doi:10.1038/s42003-023-05075-8 [paper, repository]

Atypical functional connectivity hierarchy in Rolandic epilepsy.

Journal: Communications biology

Authors' code: OSF 48tfa (no license), MICA-MNI/brainspace (BSD-3-Clause)

Status: code verified, 131 files readable, 7 matches

[35008] doi:10.1038/s43856-023-00327-4 [paper, repository]

Automatic comprehensive radiological reports for clinical acute stroke MRIs.

Journal: Communications medicine

Authors' code: cran.r-project.org/web/packages (no license), Zenodo 5565230 (GPL-3.0), Zenodo 5579390 (GPL-3.0), chin-fu-liu/acute-stroke_detection_segmentation (GPL-3.0)

Status: code verified, 4 files readable

[35009] doi:10.1073/pnas.2117484120 [paper, repository]

Normative and mechanistic model of an adaptive circuit for efficient encoding and feature extraction.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: chapochn/ORN-LN_circuit (MIT)

Status: code verified, 40 files readable, 3 matches

[35010] doi:10.1073/pnas.2305871120 [paper, data]

Horizontal gene transfer underlies the painful stings of asp caterpillars (Lepidoptera: Megalopygidae).

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[35011] doi:10.1186/s12915-023-01654-7 [paper, repository]

High-throughput characterization of cortical microtubule arrays response to anisotropic tensile stress.

Journal: BMC biology

Authors' code: VergerLab/MT_Angle2Ablation_Workflow (MIT), Zenodo 7924175 (other-open)

Status: code verified, 12 files readable, 3 matches

[35012] doi:10.1186/s12916-023-02963-y [paper, repository]

Transcriptional level of inflammation markers associates with short-term brain structural changes in first-episode schizophrenia.

Journal: BMC medicine

Authors' code: xchang007/scz_treatment (no license)

Status: code verified, 11 files readable, 1 match

[35013] doi:10.1371/journal.pone.0283299 [paper, data]

Effects of heterozygous deletion of autism-related gene Cullin-3 in mice.

Journal: PloS one

Status: data only, 1 dataset cited

[35014] doi:10.1371/journal.pone.0286969 [paper, data]

Economic value in the Brain: A meta-analysis of willingness-to-pay using the Becker-DeGroot-Marschak auction.

Journal: PloS one

Status: data only, 1 dataset cited

[35015] doi:10.1523/eneuro.0016-23.2023 [paper]

Stable Neural Population Dynamics in the Regression Subspace for Continuous and Categorical Task Parameters in Monkeys.

Journal: eNeuro

Status: code on request

[35016] doi:10.15252/embj.2022111515 [paper, data]

Gut microbiota regulates blood-cerebrospinal fluid barrier function and Aβ pathology.

Journal: The EMBO journal

Status: data only, 4 datasets cited

[35017] doi:10.15252/embj.2022112740 [paper, data]

Large-scale across species transcriptomic analysis identifies genetic selection signatures associated with longevity in mammals.

Journal: The EMBO journal

Status: data only, 21 datasets cited

[35018] doi:10.18632/aging.204833 [paper, data]

MSK1 is required for the beneficial synaptic and cognitive effects of enriched experience across the lifespan.

Journal: Aging

Status: data only, 1 dataset cited

[35019] doi:10.31744/einstein_journal/2023rc0078 [paper, data]

Post-thoracotomy paraplegia after oxidized cellulose spinal compression.

Journal: Einstein (Sao Paulo, Brazil)

Status: data only, 1 dataset cited

[35020] doi:10.3389/fimmu.2023.1213351 [paper]

Integrated bioinformatic analysis and experimental validation for exploring the key molecular of brain inflammaging.

Journal: Frontiers in immunology

Status: data only

[35021] doi:10.3390/bioengineering10070823 [paper, data]

Multi-Stage Classification of Retinal OCT Using Multi-Scale Ensemble Deep Architecture.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 2 datasets cited

[35022] doi:10.3390/ijms241411265 [paper, repository]

Profiling Chemobiological Connection between Natural Product and Target Space Based on Systematic Analysis.

Journal: International journal of molecular sciences

Authors' code: yuanweining/FusionDTA (Apache-2.0), zq-lab/npTAnal (no license)

Status: code verified, 31 files readable, 8 matches

[35023] doi:10.3390/jimaging9070140 [paper, repository]

Conv-ViT: A Convolution and Vision Transformer-Based Hybrid Feature Extraction Method for Retinal Disease Detection.

Journal: Journal of imaging

Authors' code: PramitDutta1999/Conv-ViT-A-Convolution-and-Vision-Transformer-Based-Hybrid-Feature-Extraction-Method (MIT)

Status: code verified, 3 files readable, 1 match

[35024] doi:10.3390/medicina59071281 [paper, repository]

Generation of Conventional ¹⁸F-FDG PET Images from ¹⁸F-Florbetaben PET Images Using Generative Adversarial Network: A Preliminary Study Using ADNI Dataset.

Journal: Medicina (Kaunas, Lithuania)

Authors' code: junyanz/pytorch-CycleGAN-and-pix2pix (BSD-3-Clause)

Status: code verified, 55 files readable, 2 matches

Sunday, 9 July 2023 (5 papers)

[35025] doi:10.1002/acn3.51846 [paper, data]

Prognostic model for aneurysmal subarachnoid hemorrhage patients requiring mechanical ventilation.

Journal: Annals of clinical and translational neurology

Status: data only, 1 dataset cited

[35026] doi:10.1002/advs.202300348 [paper, repository]

Single-Nucleus Transcriptome Profiling of Locally Advanced Cervical Squamous Cell Cancer Identifies Neural-Like Progenitor Program Associated with the Efficacy of Radiotherapy.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: broadinstitute/inferCNV (other)

Status: code verified, 82 files readable

[35027] doi:10.3390/bioengineering10070819 [paper, data]

A New Medical Analytical Framework for Automated Detection of MRI Brain Tumor Using Evolutionary Quantum Inspired Level Set Technique.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 2 datasets cited

[35028] doi:10.3390/cells12141813 [paper, data]

CXCR2 Is Deregulated in ALS Spinal Cord and Its Activation Triggers Apoptosis in Motor Neuron-Like Cells Overexpressing hSOD1-G93A.

Journal: Cells

Status: data only, 1 dataset cited

[35029] doi:10.7150/thno.84133 [paper, data]

Recent advances in endogenous neural stem/progenitor cell manipulation for spinal cord injury repair.

Journal: Theranostics

Status: data only, 1 dataset cited

Saturday, 8 July 2023 (15 papers)

[35030] doi:10.1002/dad2.12455 [paper, repository]

Harmonized multi-metric and multi-centric assessment of EEG source space connectivity for dementia characterization.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: PavelPrado/EEG-Harmonization (no license)

Status: empty repository, 1 file readable

[35031] doi:10.1007/s00401-023-02601-0 [paper, data]

More than meets the eye in Parkinson's disease and other synucleinopathies: from proteinopathy to lipidopathy.

Journal: Acta neuropathologica

Status: data only, 2 datasets cited

[35032] doi:10.1016/j.celrep.2023.112783 [paper]

Cortical regulation of neurogenesis and cell proliferation in the ventral subventricular zone.

Journal: Cell reports

Status: code on request

[35033] doi:10.1016/j.ebiom.2023.104703 [paper]

Anxiety adds the risk of cognitive progression and is associated with axon/synapse degeneration among cognitively unimpaired older adults.

Journal: EBioMedicine

Status: code on request

[35034] doi:10.1016/j.isci.2023.107359 [paper, repository]

Does V1 response suppression initiate binocular rivalry?

Journal: iScience

Authors' code: BrockMCarlson/BMC_AdaptdcosFigures (GPL-3.0)

Status: code verified, 114 files readable, 2 matches

[35035] doi:10.1016/j.neuroimage.2023.120258 [paper]

Testing the generalization of neural representations.

Journal: NeuroImage

Status: code on request

[35036] doi:10.1016/j.nicl.2023.103468 [paper]

Multi-modal MRI measures reveal sensory abnormalities in major depressive disorder patients: A surface-based study.

Journal: NeuroImage. Clinical

Status: code on request

[35037] doi:10.1038/s41467-023-39861-z [paper, repository]

Parsing altered gray matter morphology of depression using a framework integrating the normative model and non-negative matrix factorization.

Journal: Nature communications

Authors' code: gaussianprocess.org/gpml/code (no license)

Status: code verified

[35038] doi:10.1038/s41467-023-39895-3 [paper, repository]

Leveraging spatial transcriptomics data to recover cell locations in single-cell RNA-seq with CeLEry.

Journal: Nature communications

Authors' code: QihuangZhang/CeLEry (MIT), Zenodo 8019107 (other-open)

Status: code verified, 110 files readable, 6 matches

[35039] doi:10.1038/s41598-023-35301-6 [paper, data]

Arteriovenous malformation Map2k1 mutation affects vasculogenesis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35040] doi:10.1038/s41598-023-38243-1 [paper, repository]

A comparison of different machine-learning techniques for the selection of a panel of metabolites allowing early detection of brain tumors.

Journal: Scientific reports

Authors' code: jolars/datamonger (MIT)

Status: code verified, 176 files readable, 1 match

[35041] doi:10.1038/s41598-023-38313-4 [paper, data]

Reverse effect of home-use binaural beats brain stimulation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35042] doi:10.1161/jaha.123.030676 [paper, data]

Contribution of Conventional Cardiovascular Risk Factors to Brain White Matter Hyperintensities.

Journal: Journal of the American Heart Association

Status: data only, 1 dataset cited

[35043] doi:10.1186/s12906-023-04060-2 [paper, repository]

Exploration of acupuncture therapy in the treatment of MCI patients with the ApoE ε4 gene based on the brain-gut axis theory.

Journal: BMC complementary medicine and therapies

Authors' code: najoshi/sickle (MIT)

Status: code verified, 10 files readable

[35044] doi:10.1186/s13063-023-07493-9 [paper]

Effects of low-dose intravenous heparin therapy in aneurysmal subarachnoid hemorrhage: a randomized controlled clinical trial protocol.

Journal: Trials

Status: code on request

Friday, 7 July 2023 (28 papers)

[35045] doi:10.1002/hbm.26413 [paper, repository]

Using predictive validity to compare associations between brain damage and behavior.

Journal: Human brain mapping

Authors' code: sites.google.com/site/ttschnur (no license)

Status: code verified

[35046] doi:10.1016/j.celrep.2023.112771 [paper, repository]

A circuit from the locus coeruleus to the anterior cingulate cortex modulates offspring interactions in mice.

Journal: Cell reports

Authors' code: Zenodo 7998686 (CC-BY-4.0)

Status: code verified, 21 files readable, 5 matches

[35047] doi:10.1016/j.virusres.2023.199166 [paper, data]

ZIKV infection differentially affects the transcriptional profiles in HTR8 and U251 cells.

Journal: Virus research

Status: data only, 1 dataset cited

[35048] doi:10.1016/j.xcrm.2023.101100 [paper, repository]

Coordinated human sleeping brainwaves map peripheral body glucose homeostasis.

Journal: Cell reports. Medicine

Authors' code: raphaelvallat/vallat2023_coupling_glucose (no license)

Status: code verified, 16 files readable, 12 matches

[35049] doi:10.1016/j.xpro.2023.102370 [paper, repository]

Studying naturalistic human communication using dual-EEG and audio-visual recordings.

Journal: STAR protocols

Authors' code: OSF 3dp2e (no license)

Status: code verified, 1 file readable, 2 matches

[35050] doi:10.1016/j.ynstr.2023.100555 [paper, repository]

Integrative bioinformatics and artificial intelligence analyses of transcriptomics data identified genes associated with major depressive disorders including <i>NRG1</i>.

Journal: Neurobiology of stress

Authors' code: maryjis/autoNeuro (no license)

Status: code verified, 12 files readable, 5 matches

[35051] doi:10.1038/s41398-023-02534-y [paper, data]

Synergistic, long-term effects of glutamate dehydrogenase 1 deficiency and mild stress on cognitive function and mPFC gene and miRNA expression.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[35052] doi:10.1038/s41467-023-39616-w [paper, repository]

Expanded vacuum-stable gels for multiplexed high-resolution spatial histopathology.

Journal: Nature communications

Authors' code: lkeren/MIBIAnalysis (no license), dtebaykin/MibiStitch (GPL-3.0), BodenmillerGroup/imctools (MIT), angelolab/MAUI (BSD-3-Clause), yunhaobai/anchoring_analysis (MIT), Zenodo 7949476 (other-open)

Status: code verified, 374 files readable, 3 matches

[35053] doi:10.1038/s41467-023-39618-8 [paper, data]

Rapid expansion and visual specialisation of learning and memory centres in the brains of Heliconiini butterflies.

Journal: Nature communications

Status: data only, 1 dataset cited

[35054] doi:10.1038/s41598-023-36490-w [paper, data]

Transformer-based hand gesture recognition from instantaneous to fused neural decomposition of high-density EMG signals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35055] doi:10.1038/s41598-023-37514-1 [paper, repository]

Characterizing endogenous delta oscillations in human MEG.

Journal: Scientific reports

Authors' code: OSF bp52j (no license)

Status: code verified, 25 files readable, 19 matches

[35056] doi:10.1038/s41598-023-38011-1 [paper, data]

Ceramide releases exosomes with a specific miRNA signature for cell differentiation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35057] doi:10.1088/1478-3975/acdbfb [paper, repository]

Approximate simulation of cortical microtubule models using dynamical graph grammars.

Journal: Physical biology

Authors' code: emedwede/CajeteCMA (no license)

Status: code verified, 29 files readable

[35058] doi:10.1111/cns.14341 [paper]

Evaluation of α-synuclein in CNS-originating extracellular vesicles for Parkinsonian disorders: A systematic review and meta-analysis.

Journal: CNS neuroscience & therapeutics

Status: code on request

[35059] doi:10.1126/sciadv.adg4156 [paper, repository]

Prior expectation enhances sensorimotor behavior by modulating population tuning and subspace activity in sensory cortex.

Journal: Science advances

Authors' code: semoconlab.com/codes/bayesian-area-mt (no license), Zenodo 7879211 (CC-BY-4.0)

Status: code verified, 66 files readable, 14 matches

[35060] doi:10.1371/journal.pcbi.1011279 [paper, repository]

Multiscale effects of excitatory-inhibitory homeostasis in lesioned cortical networks: A computational study.

Journal: PLoS computational biology

Authors' code: francpsantos/stroke-e-i-homeostasis (no license)

Status: code verified, 10 files readable, 11 matches

[35061] doi:10.1371/journal.pone.0281797 [paper, repository]

An unbiased, automated platform for scoring dopaminergic neurodegeneration in C. elegans.

Journal: PloS one

Authors' code: Zenodo 7884831 (MIT)

Status: code verified, 12 files readable, 6 matches

[35062] doi:10.1371/journal.pone.0287921 [paper, repository]

Modular pipeline for reconstruction and localization of implanted intracranial ECoG and sEEG electrodes.

Journal: PloS one

Authors' code: Center-For-Neurotechnology/Reconstruction-coreg-pipeline (no license), pelednoam/mmvt_lite (GPL-3.0), pelednoam/ieil (no license), Zenodo 1078789 (other-open)

Status: code verified, 69 files readable, 13 matches

[35063] doi:10.1523/eneuro.0456-22.2023 [paper, data]

A History of Repeated Alcohol Intoxication Promotes Cognitive Impairment and Gene Expression Signatures of Disease Progression in the 3xTg Mouse Model of Alzheimer's Disease.

Journal: eNeuro

Status: data only, 1 dataset cited

[35064] doi:10.3389/fcell.2023.1184799 [paper, data]

The interplay of common genetic variants NRG1 rs2439302 and RET rs2435357 increases the risk of developing Hirschsprung's disease.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[35065] doi:10.3389/fneur.2023.1175007 [paper, data]

Identification of key potassium channel genes of temporal lobe epilepsy by bioinformatics analyses and experimental verification.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[35066] doi:10.3389/fneur.2023.1201104 [paper, data]

Arc protein, a remnant of ancient retrovirus, forms virus-like particles, which are abundantly generated by neurons during epileptic seizures, and affects epileptic susceptibility in rodent models.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[35067] doi:10.3390/brainsci13071037 [paper, data]

Transcranial Direct Current Stimulation Effects on the Neural Substrate of Conceptual Representations.

Journal: Brain sciences

Status: data only, 1 dataset cited

[35068] doi:10.3390/cancers15133532 [paper, data]

Cell-Free DNA Extracted from CSF for the Molecular Diagnosis of Pediatric Embryonal Brain Tumors.

Journal: Cancers

Status: data only, 4 datasets cited

[35069] doi:10.3390/nu15133068 [paper, data]

Ketogenic-Mimicking Diet as a Therapeutic Modality for Bipolar Disorder: Biomechanistic Rationale and Protocol for a Pilot Clinical Trial.

Journal: Nutrients

Status: data only, 2 datasets cited

[35070] doi:10.7554/elife.82386 [paper, repository]

A tradeoff between acoustic and linguistic feature encoding in spoken language comprehension.

Journal: eLife

Authors' code: tezcanf/Scripts_for_publication (MIT)

Status: code verified, 38 files readable, 3 matches

[35071] doi:10.7554/elife.85188 [paper, repository]

Functional and microstructural plasticity following social and interoceptive mental training.

Journal: eLife

Authors' code: CNG-LAB/social_function_structure_change (MIT), micapipe.readthedocs.io (no license)

Status: code verified, 7 files readable, 3 matches

[35072] doi:10.7554/elife.86333 [paper, data]

Recapitulation of pathophysiological features of AD in SARS-CoV-2-infected subjects.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 6 July 2023 (28 papers)

[35073] doi:10.1007/s10548-023-00982-9 [paper, repository]

On the Reliability of the EEG Microstate Approach.

Journal: Brain topography

Authors' code: OSF hy8v7 (no license)

Status: code verified, 1 file readable

[35074] doi:10.1016/j.celrep.2023.112733 [paper, repository]

ADAR1 Zα domain P195A mutation activates the MDA5-dependent RNA-sensing signaling pathway in brain without decreasing overall RNA editing.

Journal: Cell reports

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[35075] doi:10.1016/j.heliyon.2023.e18008 [paper, data]

Transcriptome analysis identifies the role of Class I histone deacetylase in Alzheimer's disease.

Journal: Heliyon

Status: data only, 1 dataset cited

[35076] doi:10.1016/j.patter.2023.100789 [paper, repository]

BrainCog: A spiking neural network based, brain-inspired cognitive intelligence engine for brain-inspired AI and brain simulation.

Journal: Patterns (New York, N.Y.)

Authors' code: braincog-x/brain-cog (Apache-2.0), Zenodo 7955594 (other-open), fangwei123456/spikingjelly (Apache-2.0), Zenodo 5079802 (no license)

Status: code verified, 1,381 files readable, 10 matches

[35077] doi:10.1016/j.patter.2023.100793 [paper, repository]

Transcriptomic forecasting with neural ordinary differential equations.

Journal: Patterns (New York, N.Y.)

Authors' code: FertigLab/RNAForecasterPaperCode (no license), Zenodo 6773296 (other-open), Zenodo 7942083 (other-open), FertigLab/RNAForecaster.jl (MIT), rossinerbe/rnaforecaster.jl (MIT)

Status: code verified, 121 files readable, 11 matches

[35078] doi:10.1016/j.stemcr.2023.06.003 [paper, repository]

An in silico and in vitro human neuronal network model reveals cellular mechanisms beyond Na&lt;sub&gt;V&lt;/sub&gt;1.1 underlying Dravet syndrome.

Journal: Stem cell reports

Authors' code: gitlab.utwente.nl/m7706783/mea-model (Apache-2.0)

Status: code verified, 8 files readable, 14 matches

[35079] doi:10.1016/j.xgen.2023.100356 [paper, repository]

Schizophrenia-associated somatic copy-number variants from 12,834 cases reveal recurrent &lt;i&gt;NRXN1&lt;/i&gt; and &lt;i&gt;ABCB11&lt;/i&gt; disruptions.

Journal: Cell genomics

Authors' code: freeseek/mocha (MIT), lh3/bwa (GPL-3.0), Zenodo 7778664 (other-open), nda.nih.gov (no license), emauryg/scz_scnv_paper_repo (no license)

Status: code verified, 133 files readable, 12 matches

[35080] doi:10.1038/s41380-023-02155-3 [paper, repository]

Plasticity of neuronal dynamics in the lateral habenula for cue-punishment associative learning.

Journal: Molecular psychiatry

Authors' code: Zenodo 7784977 (CC-BY-4.0)

Status: code verified, 5 files readable

[35081] doi:10.1038/s41380-023-02159-z [paper, repository]

Neural mechanisms of emotional health in traumatic brain injury patients undergoing rTMS treatment.

Journal: Molecular psychiatry

Authors' code: tjays7/TBI_TMS_emotional (no license)

Status: code verified, 6 files readable, 4 matches

[35082] doi:10.1038/s41398-023-02504-4 [paper]

Novel effects of Ras-MAPK pathogenic variants on the developing human brain and their link to gene expression and inhibition abilities.

Journal: Translational psychiatry

Status: code on request

[35083] doi:10.1038/s41398-023-02535-x [paper, data]

Early maturation and hyperexcitability is a shared phenotype of cortical neurons derived from different ASD-associated mutations.

Journal: Translational psychiatry

Status: code on request, 1 dataset cited

[35084] doi:10.1038/s41467-023-39737-2 [paper, repository]

Natural statistics support a rational account of confidence biases.

Journal: Nature communications

Authors' code: taylorwwebb/performance_optimized_NN_confidence (no license)

Status: code verified, 151 files readable, 18 matches

[35085] doi:10.1038/s41588-023-01435-6 [paper, repository]

Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis.

Journal: Nature genetics

Authors' code: MacoskoLab/PuckCaller (no license), MacoskoLab/slideseq-tools (no license), GuignardLab/sc3D (MIT), LuyiTian/Embryo_Slideseq_analysis (no license), GuignardLab/napari-sc3D-viewer (MIT)

Status: code verified, 71 files readable, 10 matches

[35086] doi:10.1038/s41597-023-02114-1 [paper, repository]

High-density Surface and Intramuscular EMG Data from the Tibialis Anterior During Dynamic Contractions.

Journal: Scientific data

Authors' code: OSF 9s3u6 (no license)

Status: code verified, 4 files readable, 2 matches

[35087] doi:10.1038/s41597-023-02338-1 [paper, data]

A beginner's guide into curated analyses of open access datasets for biomarker discovery in neurodegeneration.

Journal: Scientific data

Status: data only, 3 datasets cited

[35088] doi:10.1038/s41598-023-37113-0 [paper, data]

Decoding numeracy and literacy in the human brain: insights from MEG and MVPA.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35089] doi:10.1158/2767-9764.crc-22-0434 [paper, data]

Immuno-PET Imaging of CD69 Visualizes T-Cell Activation and Predicts Survival Following Immunotherapy in Murine Glioblastoma.

Journal: Cancer research communications

Status: data only, 1 dataset cited

[35090] doi:10.1186/s12911-023-02212-5 [paper, repository]

Perturbing BEAMs: EEG adversarial attack to deep learning models for epilepsy diagnosing.

Journal: BMC medical informatics and decision making

Authors' code: yyyuuu060/perturbing-BEAMs (no license)

Status: code verified, 16 files readable, 4 matches

[35091] doi:10.1186/s12967-023-04237-w [paper, data]

Targeting GBM with an Oncolytic Picornavirus SVV-001 alone and in combination with fractionated Radiation in a Novel Panel of Orthotopic PDX models.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[35092] doi:10.1186/s13148-023-01519-4 [paper, data]

Prenatal delta-9-tetrahydrocannabinol exposure is associated with changes in rhesus macaque DNA methylation enriched for autism genes.

Journal: Clinical epigenetics

Status: data only, 1 dataset cited

[35093] doi:10.15252/embr.202256525 [paper, data]

ENGRAILED-1 transcription factor has a paracrine neurotrophic activity on adult spinal α-motoneurons.

Journal: EMBO reports

Status: data only, 1 dataset cited

[35094] doi:10.18632/aging.204855 [paper, data]

Identification of key biomarkers in ischemic stroke: single-cell sequencing and weighted co-expression network analysis.

Journal: Aging

Status: data only, 1 dataset cited

[35095] doi:10.3389/fcvm.2023.1173769 [paper]

Radiomics and artificial neural networks modelling for identification of high-risk carotid plaques.

Journal: Frontiers in cardiovascular medicine

Status: code on request

[35096] doi:10.3389/fnbot.2023.1039644 [paper, repository]

A self-learning Monte Carlo tree search algorithm for robot path planning.

Journal: Frontiers in neurorobotics

Authors' code: Liuyi61111/SL-MCTS (no license)

Status: dead link

[35097] doi:10.3389/fonc.2023.1200815 [paper, data]

Histological and molecular glioblastoma, IDH-wildtype: a real-world landscape using the 2021 WHO classification of central nervous system tumors.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[35098] doi:10.3390/biology12070967 [paper, repository]

Information-Theoretic Approaches in EEG Correlates of Auditory Perceptual Awareness under Informational Masking.

Journal: Biology

Authors' code: OSF bqrac (no license)

Status: code verified, 6 files readable

[35099] doi:10.3390/diagnostics13132286 [paper, data]

Bleeding-Source Exploration in Subdural Hematoma: Observational Study on the Usefulness of Postmortem Computed Tomography Angiography.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[35100] doi:10.7554/elife.86943 [paper, repository]

Remapping in a recurrent neural network model of navigation and context inference.

Journal: eLife

Authors' code: ahwillia/rnn_remapping_paper (no license)

Status: code verified, 57 files readable, 15 matches

Wednesday, 5 July 2023 (24 papers)

[35101] doi:10.1007/s13311-023-01396-y [paper]

Brain-Computer Interface to Deliver Individualized Multisensory Intervention for Neuropathic Pain.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: code on request

[35102] doi:10.1016/j.crmeth.2023.100519 [paper]

Stimulated Raman scattering microscopy reveals a unique and steady nature of brain water dynamics.

Journal: Cell reports methods

Status: code on request

[35103] doi:10.1038/s41389-023-00481-3 [paper, data]

The tumor suppressor CREBBP and the oncogene MYCN cooperate to induce malignant brain tumors in mice.

Journal: Oncogenesis

Status: data only, 2 datasets cited

[35104] doi:10.1038/s41392-023-01457-w [paper, repository]

Traumatic brain injury stimulates sympathetic tone-mediated bone marrow myelopoiesis to favor fracture healing.

Journal: Signal transduction and targeted therapy

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[35105] doi:10.1038/s41398-023-02541-z [paper, repository]

Control of sustained attention and impulsivity by G_q-protein signalling in parvalbumin interneurons of the anterior cingulate cortex.

Journal: Translational psychiatry

Authors' code: KaetzelLab/Operant-Box-Design-Files (GPL-3.0), KaetzelLab/Operant-Box-Code (GPL-3.0)

Status: code verified, 78 files readable, 2 matches

[35106] doi:10.1038/s41467-023-39546-7 [paper, repository]

Closed-loop brain stimulation augments fear extinction in male rats.

Journal: Nature communications

Authors' code: buzsakilab/buzcode (GPL-3.0)

Status: code verified, 2,000 files readable, 6 matches

[35107] doi:10.1038/s41467-023-39652-6 [paper, repository]

Blood transcriptomic signatures associated with molecular changes in the brain and clinical outcomes in Parkinson's disease.

Journal: Nature communications

Authors' code: carynhale/PD_RNAseq (no license)

Status: code verified, 4 files readable, 4 matches

[35108] doi:10.1038/s41467-023-39718-5 [paper, data]

Systems consolidation induces multiple memory engrams for a flexible recall strategy in observational fear memory in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[35109] doi:10.1038/s41467-023-39761-2 [paper, repository]

Whole genome sequencing identifies genetic variants associated with neurogenic inflammation in rosacea.

Journal: Nature communications

Authors' code: nanlandetian/SkinAging (no license)

Status: code verified, 1 file readable, 1 match

[35110] doi:10.1038/s41586-023-06184-4 [paper, repository]

Skilful nowcasting of extreme precipitation with NowcastNet.

Journal: Nature

Authors' code: pySTEPS/pysteps (BSD-3-Clause), codeocean:0832447 (no license)

Status: code verified, 201 files readable, 3 matches

[35111] doi:10.1038/s41586-023-06271-6 [paper, data]

A rise-to-threshold process for a relative-value decision.

Journal: Nature

Status: code on request, 4 datasets cited

[35112] doi:10.1038/s42003-023-05063-y [paper, repository]

An implementation of integrated information theory in resting-state fMRI.

Journal: Communications biology

Authors' code: pyphi.readthedocs.io (no license), mathworks.com/matlabcentral/fileexchange (no license), figshare 3203326 (CC-BY-4.0)

Status: code verified, 84 files readable, 2 matches

[35113] doi:10.1093/braincomms/fcad195 [paper, repository]

Longitudinal changes in hippocampal texture from healthy aging to Alzheimer's disease.

Journal: Brain communications

Authors' code: Alfiew/Texture_processing_ADNI (no license), Alfiew/Longtiudinal_trajectories_of_hippocampal_texture (no license)

Status: code verified, 33 files readable, 1 match

[35114] doi:10.1098/rsos.230463 [paper, repository]

Domestication effect of reduced brain size is reverted when mink become feral.

Journal: Royal Society open science

Authors' code: ann-kathrinpohle/reverted-domestication-effect-american-mink (no license), Zenodo 8029739 (other-open), doi:10.6084/m9.figshare.c.6708315 (no license)

Status: code verified, 4 files readable

[35115] doi:10.1152/jn.00054.2023 [paper, repository]

Dissecting unsupervised learning through hidden Markov modeling in electrophysiological data.

Journal: Journal of neurophysiology

Authors' code: LauraMasaracchia/HMM_explore (no license)

Status: code verified, 15 files readable

[35116] doi:10.1186/s13023-023-02780-9 [paper, data]

Phenotype and genotype heterogeneity of PLA2G6-associated neurodegeneration in a cohort of pediatric and adult patients.

Journal: Orphanet journal of rare diseases

Status: data only, 1 dataset cited

[35117] doi:10.1371/journal.pcbi.1011246 [paper, repository]

M-current modulation of cortical slow oscillations: Network dynamics and computational modeling.

Journal: PLoS computational biology

Authors' code: ldallap/M-Current-modulation-of-cortical-slow-oscillations (GPL-3.0)

Status: code verified, 9 files readable, 1 match

[35118] doi:10.1371/journal.pone.0286596 [paper, data]

Ethanol and caffeine age-dependently alter brain and retinal neurochemical levels without affecting morphology of juvenile and adult zebrafish (Danio rerio).

Journal: PloS one

Status: data only, 1 dataset cited

[35119] doi:10.2196/46135 [paper, data]

Adaptive P300-Based Brain-Computer Interface for Attention Training: Protocol for a Randomized Controlled Trial.

Journal: JMIR research protocols

Status: data only, 2 datasets cited

[35120] doi:10.3389/fnins.2023.1183670 [paper, repository]

Delayed closed-loop neurostimulation for the treatment of pathological brain rhythms in mental disorders: a computational study.

Journal: Frontiers in neuroscience

Authors' code: Thomas-Wahl/neuroclodec (no license)

Status: code verified, 10 files readable, 5 matches

[35121] doi:10.3389/fnins.2023.1190515 [paper, repository]

Exploiting semantic information in a spiking neural SLAM system.

Journal: Frontiers in neuroscience

Authors' code: nsdumont/Semantic-Spiking-Neural-SLAM-2023 (Apache-2.0)

Status: code verified, 25 files readable, 12 matches

[35122] doi:10.3389/fnrgo.2023.1196507 [paper, repository]

Using event-related brain potentials to evaluate motor-auditory latencies in virtual reality.

Journal: Frontiers in neuroergonomics

Authors' code: OSF kb9vf (no license)

Status: code verified, 1 file readable, 3 matches

[35123] doi:10.3390/ijms241311131 [paper, data]

Expression and Activity of the Transcription Factor CCAAT/Enhancer-Binding Protein β (C/EBPβ) Is Regulated by Specific Pulse-Modulated Radio Frequencies in Oligodendroglial Cells.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[35124] doi:10.7554/elife.84387 [paper, repository]

Cholinergic modulation shifts the response of CA1 pyramidal cells to depolarizing ramps via TRPM4 channels with potential implications for place field firing.

Journal: eLife

Authors' code: modeldb:267599 (no license)

Status: code verified

Tuesday, 4 July 2023 (13 papers)

[35125] doi:10.1007/s00424-023-02837-5 [paper, data]

Oligodendrocyte precursor cells: the multitaskers in the brain.

Journal: Pflugers Archiv : European journal of physiology

Status: data only, 3 datasets cited

[35126] doi:10.1016/j.heares.2023.108838 [paper, repository]

Latent neural dynamics encode temporal context in speech.

Journal: Hearing research

Authors' code: emilyps14/iRRR_python (no license), reagan0323/iRRR (no license), emilyps14/mtrf_python (no license), bantin/jPCA (MIT)

Status: code verified, 52 files readable, 12 matches

[35127] doi:10.1038/s41467-023-39520-3 [paper, repository]

Behavioral decomposition reveals rich encoding structure employed across neocortex in rats.

Journal: Nature communications

Authors' code: bartulem/arduino-scripts (MIT), AllenInstitute/ecephys_spike_sorting (BSD-2-Clause), bartulem/KISN-PyLab (MIT), bartulem/KISN-pancortical-kinematics (MIT), Zenodo 7881727 (other-open)

Status: code verified, 196 files readable, 30 matches

[35128] doi:10.1038/s41467-023-39693-x [paper, data]

Macrophage lineage cells-derived migrasomes activate complement-dependent blood-brain barrier damage in cerebral amyloid angiopathy mouse model.

Journal: Nature communications

Status: data only, 2 datasets cited

[35129] doi:10.1101/2023.07.04.547681 [paper, repository]

A Brain-Wide Map of Neural Activity during Complex Behaviour

Journal: bioRxiv (preprint)

Authors' code: stevenjwest/brainregister (GPL-3.0), SainsburyWellcomeCentre/lasagna (GPL-3.0), cortex-lab/alyx (no license)

Status: code verified, 340 files readable

[35130] doi:10.1117/1.nph.10.3.035005 [paper]

Impact of averaging fNIRS regional coherence data when monitoring people with long term post-concussion symptoms.

Journal: Neurophotonics

Status: code on request

[35131] doi:10.1186/s12859-023-05386-x [paper, data]

The prognostic value and immune landscaps of m6A/m5C-related lncRNAs signature in the low grade glioma.

Journal: BMC bioinformatics

Status: data only, 3 datasets cited

[35132] doi:10.1186/s12974-023-02838-2 [paper, repository]

Caudal DMN neurons innervate the spleen and release CART peptide to regulate neuroimmune function.

Journal: Journal of neuroinflammation

Authors' code: aryeelab/guideseq (AGPL-3.0)

Status: code verified, 23 files readable

[35133] doi:10.1503/jpn.220184 [paper, data]

Improving causality perception judgments in schizophrenia spectrum disorder via transcranial direct current stimulation.

Journal: Journal of psychiatry & neuroscience : JPN

Status: data only, 3 datasets cited

[35134] doi:10.2196/39817 [paper, repository]

Dynamic Modelling of Mental Resilience in Young Adults: Protocol for a Longitudinal Observational Study (DynaM-OBS).

Journal: JMIR research protocols

Authors' code: OSF d6wgr (no license), OSF qj9mf (no license)

Status: empty repository

[35135] doi:10.3389/fnins.2023.1194996 [paper, data]

Dim artificial light at night alters immediate early gene expression throughout the avian brain.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[35136] doi:10.3389/fnins.2023.1200630 [paper, data]

Intracranial hemorrhage detection in 3D computed tomography images using a bi-directional long short-term memory network-based modified genetic algorithm.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[35137] doi:10.7554/elife.82697 [paper, repository]

Theta-phase-specific modulation of dentate gyrus memory neurons.

Journal: eLife

Authors' code: ndlbu/phase_specific_stim (no license)

Status: code verified, 7 files readable

Monday, 3 July 2023 (27 papers)

[35138] doi:10.1007/s12021-023-09638-2 [paper, repository]

BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes.

Journal: Neuroinformatics

Authors' code: brainlit.neurodata.io (no license)

Status: code verified

[35139] doi:10.1016/j.heliyon.2023.e17904 [paper, data]

Tracking drivers' minds: Continuous evaluation of mental load and cognitive processing in a realistic driving simulator scenario by means of the EEG.

Journal: Heliyon

Status: data only, 1 dataset cited

[35140] doi:10.1016/j.isci.2023.107259 [paper, data]

Internal selective attention is delayed by competition between endogenous and exogenous factors.

Journal: iScience

Status: data only, 1 dataset cited

[35141] doi:10.1016/j.isci.2023.107264 [paper]

SnRNA-seq reveals the heterogeneity of spinal ventral horn and mechanism of motor neuron axon regeneration.

Journal: iScience

Status: code on request

[35142] doi:10.1016/j.isci.2023.107268 [paper]

QHRD106 ameliorates ischemic stroke injury as a long-acting tissue kallikrein preparation.

Journal: iScience

Status: code on request

[35143] doi:10.1038/s41467-023-39081-5 [paper, repository]

Ventromedial prefrontal neurons represent self-states shaped by vicarious fear in male mice.

Journal: Nature communications

Authors' code: okuyamalab/Huang_et_al_2023_NatCommun (no license)

Status: code verified, 4 files readable, 3 matches

[35144] doi:10.1038/s41467-023-39411-7 [paper, repository]

Spatiotemporal proteomic atlas of multiple brain regions across early fetal to neonatal stages in cynomolgus monkey.

Journal: Nature communications

Authors' code: Zenodo 7979998 (other-open), daishaoxing/proteomic_braindev (no license)

Status: code verified, 4 files readable, 10 matches

[35145] doi:10.1038/s41467-023-39496-0 [paper, repository]

A medullary hub for controlling REM sleep and pontine waves.

Journal: Nature communications

Authors' code: tortugar/lab (no license), Zenodo 7921731 (other-open), fear-the-kraken/schott_etal_2023 (MIT)

Status: code verified, 51 files readable, 29 matches

[35146] doi:10.1038/s41598-023-37034-y [paper]

Brain imaging signatures of neuropathic facial pain derived by artificial intelligence.

Journal: Scientific reports

Status: code on request

[35147] doi:10.1038/s41598-023-38012-0 [paper, data]

Characteristic analysis of epileptic brain network based on attention mechanism.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35148] doi:10.1038/s42003-023-05036-1 [paper, repository]

Tumor-mediated microbiota alteration impairs synaptic tagging/capture in the hippocampal CA1 area via IL-1β production.

Journal: Communications biology

Authors' code: UmeAmee/16s-seq (no license)

Status: code verified, 7 files readable

[35149] doi:10.1073/pnas.2218830120 [paper, repository]

A functional logic for neurotransmitter corelease in the cholinergic forebrain pathway.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: adityanairneuro/claustrum (no license), adityanairneuro/cholinergic (MIT)

Status: code verified, 20 files readable, 1 match

[35150] doi:10.1073/pnas.2218841120 [paper, repository]

Intrinsic neural diversity quenches the dynamic volatility of neural networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Jeremie-Lefebvre/Hutt-et-al-PNAS-2023 (no license)

Status: code verified, 9 files readable

[35151] doi:10.1073/pnas.2220523120 [paper, repository]

Subspace partitioning in the human prefrontal cortex resolves cognitive interference.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: JanWeber-neuro/PNAS-Subspace-Partitioning (no license)

Status: code verified, 9 files readable, 1 match

[35152] doi:10.1073/pnas.2302143120 [paper, data]

MAPK/MAK/MRK overlapping kinase (MOK) controls microglial inflammatory/type-I IFN responses via Brd4 and is involved in ALS.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[35153] doi:10.1111/bpa.13186 [paper, data]

Krüppel-like factor 7 deficiency disrupts corpus callosum development and neuronal migration in the developing mouse cerebral cortex.

Journal: Brain pathology (Zurich, Switzerland)

Status: data only, 1 dataset cited

[35154] doi:10.1186/s12916-023-02935-2 [paper, repository]

Progressive trajectories of schizophrenia across symptoms, genes, and the brain.

Journal: BMC medicine

Authors' code: juryxy/JuSpace (no license), neuro.uestc.edu.cn/nit.html (no license), BMHLab/AHBAprocessing (no license), jssuestc/MultimodalCorr (Apache-2.0), SarahMorgan/Morphometric_Similarity_SZ (MIT), spin-test/spin-test (MIT), frantisekvasa/rotate_parcellation (MIT), enigma-toolbox.readthedocs.io (no license)

Status: code verified, 518 files readable, 3 matches

[35155] doi:10.1186/s12916-023-02941-4 [paper, data]

Sampling inequalities affect generalization of neuroimaging-based diagnostic classifiers in psychiatry.

Journal: BMC medicine

Status: data only, 1 dataset cited

[35156] doi:10.1371/journal.pcbi.1011212 [paper, repository]

Biological complexity facilitates tuning of the neuronal parameter space.

Journal: PLoS computational biology

Authors' code: Zenodo 7863310 (CC-BY-4.0)

Status: code verified

[35157] doi:10.1371/journal.pgen.1010793 [paper]

Yeast NDI1 reconfigures neuronal metabolism and prevents the unfolded protein response in mitochondrial complex I deficiency.

Journal: PLoS genetics

Status: data only

[35158] doi:10.2147/ndt.s407731 [paper, data]

The Synaptic and Circuit Functions of Vitamin D in Neurodevelopment Disorders.

Journal: Neuropsychiatric disease and treatment

Status: data only, 1 dataset cited

[35159] doi:10.3389/fcell.2023.1212375 [paper, data]

Glycolytic activity is required for the onset of neural plate folding during neural tube closure in mouse embryos.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[35160] doi:10.3389/fnmol.2023.1163447 [paper, repository]

Fiberoptic hemodynamic spectroscopy reveals abnormal cerebrovascular reactivity in a freely moving mouse model of Alzheimer's disease.

Journal: Frontiers in molecular neuroscience

Authors' code: scholarship.libraries.rutgers.edu/esploro/outputs (no license)

Status: code verified

[35161] doi:10.3389/fnmol.2023.1214439 [paper, data]

Differential splicing choices made by neurons and astrocytes and their importance when investigating signal-dependent alternative splicing in neural cells.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[35162] doi:10.7554/elife.84072 [paper, repository]

Brain and molecular mechanisms underlying the nonlinear association between close friendships, mental health, and cognition in children.

Journal: eLife

Authors' code: juryxy/juspace (no license), chunshen617/friendship (MIT)

Status: code verified, 31 files readable, 4 matches

[35163] doi:10.7554/elife.84888 [paper, repository]

Prefrontal cortex state representations shape human credit assignment.

Journal: eLife

Authors' code: amrita-lamba/eLife_prefrontal_credit_assignment (no license)

Status: code verified, 150 files readable, 11 matches

[35164] doi:10.7554/elife.85487 [paper, repository]

Large-scale neural dynamics in a shared low-dimensional state space reflect cognitive and attentional dynamics.

Journal: eLife

Authors' code: hyssong/neuraldynamics (no license)

Status: code verified, 6 files readable, 13 matches

Sunday, 2 July 2023 (1 paper)

[35165] doi:10.1038/s41598-023-37723-8 [paper]

Radiomics characterization of tissues in an animal brain tumor model imaged using dynamic contrast enhanced (DCE) MRI.

Journal: Scientific reports

Status: code on request

Saturday, 1 July 2023 (32 papers, 3 on this page)

[35166] doi:10.1002/dad2.12463 [paper, repository]

The effect of plasma cortisol on hippocampal atrophy and clinical progression in mild cognitive impairment.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: OSF 6n7up (no license)

Status: code verified, 5 files readable, 7 matches

[35167] doi:10.1002/dad2.12464 [paper, repository]

Dimensional clinical phenotyping using <i>post-mortem</i> brain donor medical records: <i>post-mortem</i> RDoC profiling is associated with Alzheimer's disease neuropathology.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: thmccoy/CQH-Dimensional-Phenotyper (GPL-3.0)

Status: code verified, 4 files readable

[35168] doi:10.1002/dad2.12474 [paper, repository]

Consensus recommendations for clinical assessment tools for the diagnosis of posterior cortical atrophy syndrome from the Atypical AD PIA of ISTAART.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: OSF mwx63 (no license)

Status: empty repository

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