Every paper, by date: page 156

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 156 of 200: 21 July 2023 to 12 July 2023.

Friday, 21 July 2023 (25 papers, 21 on this page)

[34721] doi:10.1016/j.ebiom.2023.104720 [paper, repository]

Widespread dysregulation of mRNA splicing implicates RNA processing in the development and progression of Huntington's disease.

Journal: EBioMedicine

Authors' code: langleylab/Tano_et_al_IsoHD_alt_splicing (no license)

Status: code verified, 5 files readable, 11 matches

[34722] doi:10.1038/s41467-023-40144-w [paper, repository]

Representations in human primary visual cortex drift over time.

Journal: Nature communications

Authors' code: elimerriam/repDriftNSD (no license)

Status: code verified, 10 files readable, 2 matches

[34723] doi:10.1038/s41467-023-40145-9 [paper]

The behavioral signature of stepwise learning strategy in male rats and its neural correlate in the basal forebrain.

Journal: Nature communications

Status: code on request

[34724] doi:10.1038/s41540-023-00298-1 [paper, repository]

Growth exponents reflect evolutionary processes and treatment response in brain metastases.

Journal: NPJ systems biology and applications

Authors' code: JuanJS117/MesoscopicModel (GPL-3.0)

Status: code verified, 14 files readable

[34725] doi:10.1038/s41598-023-35401-3 [paper, data]

Identification of the molecular subtypes and construction of risk models in neuroblastoma.

Journal: Scientific reports

Status: data only, 2 datasets cited

[34726] doi:10.1038/s41598-023-38854-8 [paper, repository]

Free viewing biases for complex scenes in preschoolers and adults.

Journal: Scientific reports

Authors' code: OSF 78aqf (no license)

Status: code verified, 18 files readable, 2 matches

[34727] doi:10.1038/s42003-023-05124-2 [paper, repository]

Single-cell sequencing reveals the landscape of the human brain metastatic microenvironment.

Journal: Communications biology

Authors' code: QSong-github/BrMet (no license), Zenodo 8124896 (other-open)

Status: code verified, 6 files readable

[34728] doi:10.1088/1741-2552/ace5db [paper, repository]

Slow-wave modulation analysis during states of unconsciousness using the novel tau-modulation method.

Journal: Journal of neural engineering

Authors' code: neurotechcenter/TauModulation_SlowWave (no license)

Status: code verified, 24 files readable, 2 matches

[34729] doi:10.1117/1.jbo.28.7.076003 [paper, repository]

Cortical microvascular blood flow velocity mapping by combining dynamic light scattering optical coherence tomography and two-photon microscopy.

Journal: Journal of biomedical optics

Authors' code: secomb/StackEnhanceV1 (no license), qipianmgh/MicroscopicFlowMapping (no license)

Status: code verified, 81 files readable, 2 matches

[34730] doi:10.1126/sciadv.ade6903 [paper, repository]

A multilevel account of hippocampal function in spatial and concept learning: Bridging models of behavior and neural assemblies.

Journal: Science advances

Authors' code: robmok/multiunit-cluster (GPL-3.0), OSF uf8pa (no license)

Status: code verified, 38 files readable, 6 matches

[34731] doi:10.1126/sciadv.adh0102 [paper, data]

The astrocytic TRPA1 channel mediates an intrinsic protective response to vascular cognitive impairment via LIF production.

Journal: Science advances

Status: data only, 1 dataset cited

[34732] doi:10.1162/opmi_a_00091 [paper, repository]

Metacognitive Information Theory.

Journal: Open mind : discoveries in cognitive science

Authors' code: Peter-Dayan-TN/metainf (no license)

Status: code verified, 36 files readable, 2 matches

[34733] doi:10.1186/s12916-023-02940-5 [paper, data]

Association of pro-inflammatory diet with increased risk of all-cause dementia and Alzheimer's dementia: a prospective study of 166,377 UK Biobank participants.

Journal: BMC medicine

Status: data only, 3 datasets cited

[34734] doi:10.1186/s13287-023-03407-3 [paper, data]

Human platelet lysate stimulates neurotrophic properties of human adipose-derived stem cells better than Schwann cell-like cells.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[34735] doi:10.1371/journal.pbio.3002178 [paper, data]

Spatiotemporal dynamics characterise spectral connectivity profiles of continuous speaking and listening.

Journal: PLoS biology

Status: data only, 1 dataset cited

[34736] doi:10.1371/journal.pcbi.1010996 [paper, repository]

Neural activity induces strongly coupled electro-chemo-mechanical interactions and fluid flow in astrocyte networks and extracellular space-A computational study.

Journal: PLoS computational biology

Authors' code: martejulie/fluid-flow-in-astrocyte-networks (MIT)

Status: code verified, 15 files readable, 7 matches

[34737] doi:10.1371/journal.pone.0288654 [paper, data]

Transcranial focused ultrasound stimulation of cortical and thalamic somatosensory areas in human.

Journal: PloS one

Status: data only, 2 datasets cited

[34738] doi:10.1523/eneuro.0403-22.2023 [paper, repository]

Bayesian and Discriminative Models for Active Visual Perception across Saccades.

Journal: eNeuro

Authors' code: dsub-neuro/non-bayesian-behavior-paper (no license)

Status: code verified, 72 files readable, 1 match

[34739] doi:10.3389/fped.2023.1102639 [paper, data]

Clinical and genetic characteristics of 36 children with Joubert syndrome.

Journal: Frontiers in pediatrics

Status: data only, 1 dataset cited

[34740] doi:10.3389/frsle.2023.1168209 [paper, repository]

AuReTim: an inexpensive and extensible open-source auditory psychomotor vigilance test.

Journal: Frontiers in sleep

Authors' code: strator1/AuReTimExtension (GPL-3.0), strator1/AuReTim (GPL-3.0)

Status: code verified, 168 files readable, 1 match

[34741] doi:10.3390/ijms241411775 [paper, data]

Long-Term Treatment with Cannabidiol-Enriched <i>Cannabis</i> Extract Induces Synaptic Changes in the Adolescent Rat Hippocampus.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Thursday, 20 July 2023 (37 papers)

[34742] doi:10.1002/hbm.26420 [paper, repository]

Single-subject electroencephalography measurement of interhemispheric transfer time for the in-vivo estimation of axonal morphology.

Journal: Human brain mapping

Authors' code: DNC-EEG-platform/SingleSubjectIHTTEstimation (GPL-3.0)

Status: code verified, 8 files readable, 1 match

[34743] doi:10.1002/hbm.26430 [paper, repository]

Planning ahead: Predictable switching recruits task-active and resting-state networks.

Journal: Human brain mapping

Authors' code: daniellekurtin/MutualInformationFunctionalConnectivity_TaskSwitching (MIT)

Status: code verified, 78 files readable, 5 matches

[34744] doi:10.1016/j.dib.2023.109433 [paper, data]

Anti-inflammatory cytokine stimulation of HMC3 cells: Proteome dataset.

Journal: Data in brief

Status: data only, 3 datasets cited

[34745] doi:10.1038/s41413-023-00270-z [paper, repository]

Causal associations of brain structure with bone mineral density: a large-scale genetic correlation study.

Journal: Bone research

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable

[34746] doi:10.1038/s41467-023-40041-2 [paper, data]

Structures of channelrhodopsin paralogs in peptidiscs explain their contrasting K⁺ and Na⁺ selectivities.

Journal: Nature communications

Status: data only, 2 datasets cited

[34747] doi:10.1038/s41467-023-40078-3 [paper, repository]

Neural signatures of social inferences predict the number of real-life social contacts and autism severity.

Journal: Nature communications

Authors' code: spunt/whyhowlocalizer (no license), fil.ion.ucl.ac.uk/spm (no license), Zenodo 50244 (other-open), Zenodo 8011875 (other-open), spunt/bspm (MIT)

Status: code verified, 2,050 files readable, 8 matches

[34748] doi:10.1038/s41467-023-40143-x [paper, repository]

Chemogenetic dissection of a prefrontal-hypothalamic circuit for socially subjective reward valuation in macaques.

Journal: Nature communications

Authors' code: AtsushiNoritake/Noritake_etal_DCZexperiment (no license), Zenodo 8043230 (other-open)

Status: code verified, 10 files readable, 1 match

[34749] doi:10.1038/s41592-023-01965-1 [paper, data]

Voltage-Seq: all-optical postsynaptic connectome-guided single-cell transcriptomics.

Journal: Nature methods

Status: data only, 1 dataset cited

[34750] doi:10.1038/s41593-023-01380-x [paper, repository]

An adaptive behavioral control motif mediated by cortical axo-axonic inhibition.

Journal: Nature neuroscience

Authors' code: KanghoonJ/Jung_NatNeuro_2023 (no license), fitzlab/CellMagicWand (MIT)

Status: code verified, 87 files readable, 14 matches

[34751] doi:10.1038/s41593-023-01382-9 [paper, repository]

Organizing memories for generalization in complementary learning systems.

Journal: Nature neuroscience

Authors' code: neuroai/Go-CLS_v2 (no license), Zenodo 7941122 (other-open)

Status: code verified, 82 files readable, 8 matches

[34752] doi:10.1038/s41593-023-01387-4 [paper, repository]

Excitatory nucleo-olivary pathway shapes cerebellar outputs for motor control.

Journal: Nature neuroscience

Authors' code: XiaoluOne/Excitatory-FN-IO-paper (no license)

Status: code verified, 90 files readable, 8 matches

[34753] doi:10.1038/s41597-023-02386-7 [paper, repository]

An open presurgery MRI dataset of people with epilepsy and focal cortical dysplasia type II.

Journal: Scientific data

Authors' code: 1-w/pydeface (MIT)

Status: code verified, 7 files readable

[34754] doi:10.1038/s41598-023-38573-0 [paper, repository]

Molecular-enriched functional connectivity in the human brain using multiband multi-echo simultaneous ASL/BOLD fMRI.

Journal: Scientific reports

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), ottaviadipasquale/react-fmri (MIT), Zenodo 4730558 (other-open)

Status: code verified, 60 files readable

[34755] doi:10.1038/s41598-023-38833-z [paper, repository]

Automated hippocampal segmentation algorithms evaluated in stroke patients.

Journal: Scientific reports

Authors' code: ai-med/quickNAT_pytorch (MIT), neuroai-hd.org (no license)

Status: code verified, 13 files readable

[34756] doi:10.1038/s42003-023-05109-1 [paper, repository]

Altered brain dynamics index levels of arousal in complete locked-in syndrome.

Journal: Communications biology

Authors' code: Temporo-spatial/PLE_LZC (no license)

Status: code verified, 3 files readable

[34757] doi:10.1038/s43856-023-00313-w [paper, repository]

Identifying healthy individuals with Alzheimer's disease neuroimaging phenotypes in the UK Biobank.

Journal: Communications medicine

Authors' code: tjiagoM/adni_phenotypes (other), Zenodo 7738962 (CC-BY-4.0)

Status: code verified, 30 files readable, 6 matches

[34758] doi:10.1093/pnasnexus/pgad230 [paper, repository]

Transcription, structure, and organoids translate time across the lifespan of humans and great apes.

Journal: PNAS nexus

Authors' code: doi:10.5061/dryad.0cfxpnw7r (no license)

Status: code verified

[34759] doi:10.1159/000532022 [paper, data]

Interferon Beta-1a versus Glatiramer Acetate: Changes of Innate Immunity in a Group of Women with Multiple Sclerosis.

Journal: European neurology

Status: data only, 1 dataset cited

[34760] doi:10.1162/nol_a_00107 [paper]

Corticocerebellar White Matter Integrity Is Related to Naming Outcome in Post-Stroke Aphasia.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: code on request

[34761] doi:10.1162/nol_a_00108 [paper, data]

Evidence for a Spoken Word Lexicon in the Auditory Ventral Stream.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 1 dataset cited

[34762] doi:10.1186/s13024-023-00634-3 [paper, data]

Axonal energy metabolism, and the effects in aging and neurodegenerative diseases.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[34763] doi:10.1186/s13073-023-01206-2 [paper, data]

A proteomics analysis of 5xFAD mouse brain regions reveals the lysosome-associated protein Arl8b as a candidate biomarker for Alzheimer's disease.

Journal: Genome medicine

Status: data only, 5 datasets cited

[34764] doi:10.1371/journal.pone.0287506 [paper, data]

Effects of repetitive mild traumatic brain injury on weight gain and chronic behavioral outcomes in male rats.

Journal: PloS one

Status: data only, 1 dataset cited

[34765] doi:10.1523/jneurosci.2043-22.2023 [paper, data]

Scene Perception and Visuospatial Memory Converge at the Anterior Edge of Visually Responsive Cortex.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: code on request, 1 dataset cited

[34766] doi:10.21769/bioprotoc.4722 [paper, repository]

A New Approach to Generate Gastruloids to Develop Anterior Neural Tissues.

Journal: Bio-protocol

Authors' code: Zenodo 7409423 (CC-BY-4.0), Zenodo 4544370 (CC-BY-4.0)

Status: empty repository

[34767] doi:10.3389/fninf.2023.1212384 [paper, repository]

Efficient simulation of neural development using shared memory parallelization.

Journal: Frontiers in neuroinformatics

Authors' code: CNS-OIST/NeuroDevSim (GPL-3.0)

Status: code verified, 32 files readable, 15 matches

[34768] doi:10.3389/fnins.2023.1200661 [paper, repository]

A mechanistic account of visual discomfort.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 7801531 (CC-BY-SA-4.0)

Status: code verified, 57 files readable, 7 matches

[34769] doi:10.3389/fnins.2023.1225606 [paper, repository]

Harmonization of multi-site functional MRI data with dual-projection based ICA model.

Journal: Frontiers in neuroscience

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable

[34770] doi:10.3390/biology12071022 [paper]

The Spatial Precision of Contextual Feedback Signals in Human V1.

Journal: Biology

Status: code on request

[34771] doi:10.3390/brainsci13071099 [paper, repository]

Operational Modal Analysis of Near-Infrared Spectroscopy Measure of 2-Month Exercise Intervention Effects in Sedentary Older Adults with Diabetes and Cognitive Impairment.

Journal: Brain sciences

Authors' code: code.vt.edu/vibes-lab/modal-analysis (no license)

Status: code verified

[34772] doi:10.3390/genes14071479 [paper, data]

Investigating the Genetic Background of Spastic Syndrome in North American Holstein Cattle Based on Heritability, Genome-Wide Association, and Functional Genomic Analyses.

Journal: Genes

Status: data only, 1 dataset cited

[34773] doi:10.3390/ijms241411687 [paper]

Investigation of the Effects of Metallic Nanoparticles on Fertility Outcomes and Endocrine Modification of the Hypothalamic-Pituitary-Gonadal Axis.

Journal: International journal of molecular sciences

Status: data only

[34774] doi:10.3390/s23146537 [paper, repository]

An Iterative Implementation of the Signal Space Separation Method for Magnetoencephalography Systems with Low Channel Counts.

Journal: Sensors (Basel, Switzerland)

Authors' code: tierneytim/OPM (GPL-2.0)

Status: code verified, 36 files readable

[34775] doi:10.3390/s23146546 [paper, repository]

Decoding Mental Effort in a Quasi-Realistic Scenario: A Feasibility Study on Multimodal Data Fusion and Classification.

Journal: Sensors (Basel, Switzerland)

Authors' code: OSF 9dbcj (no license)

Status: code verified, 12 files readable, 12 matches

[34776] doi:10.7554/elife.80090 [paper, repository]

New hypotheses of cell type diversity and novelty from orthology-driven comparative single cell and nuclei transcriptomics in echinoderms.

Journal: eLife

Authors' code: supp:PMC10396339/elife-80090-code1.zip (no license)

Status: code verified, 1 file readable, 2 matches

[34777] doi:10.7554/elife.87696 [paper, repository]

Rubella virus tropism and single-cell responses in human primary tissue and microglia-containing organoids.

Journal: eLife

Authors' code: cnk113/analysis-scripts (no license)

Status: code verified, 15 files readable

[34778] doi:10.7717/peerj.15721 [paper, repository]

Topological data analysis for revealing dynamic brain reconfiguration in MEG data.

Journal: PeerJ

Authors' code: Zenodo 7883031 (CC-BY-4.0), supp:PMC10363343/peerj-11-15721-s001.py (no license)

Status: code verified, 1 file readable

Wednesday, 19 July 2023 (36 papers)

[34779] doi:10.1002/hbm.26415 [paper, repository]

Accounting for temporal variability in functional magnetic resonance imaging improves prediction of intelligence.

Journal: Human brain mapping

Authors' code: leo-yangli/abcd_time_series (no license)

Status: code verified, 4 files readable, 4 matches

[34780] doi:10.1002/hbm.26421 [paper, repository]

Data-driven electrical conductivity brain imaging using 3 T MRI.

Journal: Human brain mapping

Authors' code: Yonsei-MILab (no license), Yonsei-MILab/Non-linear-Conductivity-Estimator (no license)

Status: code verified, 4 files readable, 2 matches

[34781] doi:10.1002/mrm.29803 [paper, data]

Real-time fetal brain tracking for functional fetal MRI.

Journal: Magnetic resonance in medicine

Status: data only, 1 dataset cited

[34782] doi:10.1007/s00401-023-02599-5 [paper, data]

Cryptic exon detection and transcriptomic changes revealed in single-nuclei RNA sequencing of C9ORF72 patients spanning the ALS-FTD spectrum.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[34783] doi:10.1016/j.celrep.2023.112826 [paper]

Chemogenetic regulation of the TARP-lipid interaction mimics LTP and reversibly modifies behavior.

Journal: Cell reports

Status: code on request

[34784] doi:10.1016/j.crmeth.2023.100534 [paper, repository]

Synthetic whole-slide image tile generation with gene expression profile-infused deep generative models.

Journal: Cell reports methods

Authors' code: gevaertlab/RNA-GAN (MIT)

Status: code verified, 20 files readable, 5 matches

[34785] doi:10.1021/acs.est.3c01040 [paper, repository]

Tire-Derived Transformation Product 6PPD-Quinone Induces Mortality and Transcriptionally Disrupts Vascular Permeability Pathways in Developing Coho Salmon.

Journal: Environmental science & technology

Authors' code: jbg03/coho_embryos_6PPD-quinone (no license)

Status: code verified, 3 files readable, 8 matches

[34786] doi:10.1021/acsomega.3c01781 [paper, data]

6-Aminoflavone Activates Nrf2 to Inhibit the Phospho-JNK/TNF-α Signaling Pathway to Reduce Amyloid Burden in an Aging Mouse Model.

Journal: ACS omega

Status: data only, 1 dataset cited

[34787] doi:10.1038/s41392-023-01487-4 [paper, data]

Cancer cell employs a microenvironmental neural signal trans-activating nucleus-mitochondria coordination to acquire stemness.

Journal: Signal transduction and targeted therapy

Status: data only, 1 dataset cited

[34788] doi:10.1038/s41467-023-39916-1 [paper, repository]

An open resource combining multi-contrast MRI and microscopy in the macaque brain.

Journal: Nature communications

Authors' code: git.fmrib.ox.ac.uk/amyh/bigmacanalysis (no license), Zenodo 7920662 (CC-BY-4.0)

Status: code verified, 207 files readable, 28 matches

[34789] doi:10.1038/s41467-023-39936-x [paper, data]

Characterising the RNA-binding protein atlas of the mammalian brain uncovers RBM5 misregulation in mouse models of Huntington's disease.

Journal: Nature communications

Status: data only, 8 datasets cited

[34790] doi:10.1038/s41467-023-40044-z [paper]

Nucleus reuniens transiently synchronizes memory networks at beta frequencies.

Journal: Nature communications

Status: code on request

[34791] doi:10.1038/s41467-023-40100-8 [paper, repository]

Re-expression of CA1 and entorhinal activity patterns preserves temporal context memory at long timescales.

Journal: Nature communications

Authors' code: futingzou/nsdFinalMem (no license)

Status: code verified, 3 files readable

[34792] doi:10.1038/s41467-023-40111-5 [paper]

Purkinje cell microzones mediate distinct kinematics of a single movement.

Journal: Nature communications

Status: code on request

[34793] doi:10.1038/s41586-023-06357-1 [paper, repository]

A cell-type-specific error-correction signal in the posterior parietal cortex.

Journal: Nature

Authors' code: HarveyLab/Acquisition2P_class (MIT), HarveyLab/mouseVR (MIT)

Status: code verified, 159 files readable, 1 match

[34794] doi:10.1038/s41598-023-38240-4 [paper, repository]

Deep joint learning of pathological region localization and Alzheimer's disease diagnosis.

Journal: Scientific reports

Authors' code: ku-milab/PG-BrainBagNet (no license)

Status: code verified, 19 files readable, 7 matches

[34795] doi:10.1038/s42003-023-05126-0 [paper, repository]

Parvalbumin neurons enhance temporal coding and reduce cortical noise in complex auditory scenes.

Journal: Communications biology

Authors' code: hhentschke/measures-of-effect-size-toolbox (BSD-2-Clause), Zenodo 14290575 (CC-BY-4.0)

Status: code verified, 360 files readable, 8 matches

[34796] doi:10.1073/pnas.2300058120 [paper, data]

Modulatory dynamics mark the transition between anesthetic states of unconsciousness.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[34797] doi:10.1093/braincomms/fcad205 [paper, repository]

Chronic intracranial EEG recordings and interictal spike rate reveal multiscale temporal modulations in seizure states.

Journal: Brain communications

Authors' code: macolominas/CEEMDAN (MIT), Zenodo 5503590 (CC-BY-4.0)

Status: code verified, 4 files readable

[34798] doi:10.1098/rsbl.2023.0265 [paper, repository]

Crossmodal association between visual and acoustic cues in a tortoise (<i>Testudo hermanni</i>).

Journal: Biology letters

Authors' code: doi:10.6084/m9.figshare.c.6729989 (no license)

Status: code found, still to be checked

[34799] doi:10.1098/rsif.2023.0212 [paper, repository]

Using neuronal models to capture burst-and-glide motion and leadership in fish.

Journal: Journal of the Royal Society, Interface

Authors' code: linneagyllingberg/neuronal-fish-dynamics (no license)

Status: empty repository, 1 file readable

[34800] doi:10.1098/rsos.221475 [paper, repository]

Neural ordinary differential equations with irregular and noisy data.

Journal: Royal Society open science

Authors' code: gitlab.mpi-magdeburg.mpg.de/goyalp/implicit_neuralodes (no license), Zenodo 8063848 (CC-BY-4.0)

Status: code verified, 72 files readable, 3 matches

[34801] doi:10.1101/2023.07.19.549692 [paper, data]

The neural and computational architecture of feedback dynamics in mouse cortex during stimulus report

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[34802] doi:10.1111/cns.14362 [paper, data]

MPP2 interacts with SK2 to rescue the excitability of glutamatergic neurons in the BLA and facilitate the extinction of conditioned fear in mice.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[34803] doi:10.1126/sciadv.adh3347 [paper, data]

Parkin regulates amino acid homeostasis at mitochondria-lysosome (M/L) contact sites in Parkinson's disease.

Journal: Science advances

Status: data only, 1 dataset cited

[34804] doi:10.1186/s13024-023-00638-z [paper, repository]

Quantitative proteomics of cerebrospinal fluid from African Americans and Caucasians reveals shared and divergent changes in Alzheimer's disease.

Journal: Molecular neurodegeneration

Authors' code: edammer/GOparallel (MIT)

Status: code verified, 3 files readable

[34805] doi:10.1371/journal.pbio.3002112 [paper, repository]

Targeting AAV vectors to the central nervous system by engineering capsid-receptor interactions that enable crossing of the blood-brain barrier.

Journal: PLoS biology

Authors' code: vector-engineering/AAV_capsid_receptor (BSD-3-Clause)

Status: code verified, 29 files readable, 16 matches

[34806] doi:10.2196/46105 [paper, repository]

Applied Machine Learning Techniques to Diagnose Voice-Affecting Conditions and Disorders: Systematic Literature Review.

Journal: Journal of medical Internet research

Authors' code: AIITPlanet/Protocol (no license)

Status: empty repository

[34807] doi:10.3389/fcell.2023.1227723 [paper, data]

KMT2C knockout generates ASD-like behaviors in mice.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[34808] doi:10.3389/fnagi.2023.1063861 [paper, repository]

Integrated analysis of plasma proteome and cortex single-cell transcriptome reveals the novel biomarkers during cortical aging.

Journal: Frontiers in aging neuroscience

Authors' code: figshare 22634395 (CC-BY-4.0)

Status: code verified, 1 file readable, 4 matches

[34809] doi:10.3389/fnins.2023.1238306 [paper, data]

Mutant HTT does not affect glial development but impairs myelination in the early disease stage.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[34810] doi:10.3390/e25071086 [paper, repository]

Probing Intrinsic Neural Timescales in EEG with an Information-Theory Inspired Approach: Permutation Entropy Time Delay Estimation (PE-TD).

Journal: Entropy (Basel, Switzerland)

Authors' code: georgnorthoff.com/code (no license)

Status: code verified

[34811] doi:10.3390/nu15143204 [paper, data]

Dietary Patterns and Alzheimer's Disease: An Updated Review Linking Nutrition to Neuroscience.

Journal: Nutrients

Status: data only, 3 datasets cited

[34812] doi:10.3892/etm.2023.12125 [paper, data]

lncRNA and circRNA expression profiles in the hippocampus of Aβ_25‑35‑induced AD mice treated with Tripterygium glycoside.

Journal: Experimental and therapeutic medicine

Status: data only, 1 dataset cited

[34813] doi:10.7554/elife.80661 [paper, repository]

Hippocampal place cell remapping occurs with memory storage of aversive experiences.

Journal: eLife

Authors' code: tadblair/tadblair (no license), Aharoni-Lab/Miniscope-LFOV (GPL-3.0)

Status: code verified, 961 files readable, 5 matches

[34814] doi:10.7717/peerj-cs.1485 [paper, repository]

A fully automated approach involving neuroimaging and deep learning for Parkinson's disease detection and severity prediction.

Journal: PeerJ. Computer science

Authors' code: supp:PMC10403203/peerj-cs-09-1485-s001.ipynb (no license), supp:PMC10403203/peerj-cs-09-1485-s002.ipynb (no license)

Status: code verified, 2 files readable, 3 matches

Tuesday, 18 July 2023 (22 papers)

[34815] doi:10.1007/s11547-023-01675-w [paper, repository]

Vascular risk factors and astrocytic marker for the glymphatic system activity.

Journal: La Radiologia medica

Authors' code: iDIO4dMRI/iDIO (no license)

Status: code verified, 18 files readable, 3 matches

[34816] doi:10.1007/s12975-023-01173-1 [paper, data]

TRPC Channels Activated by G Protein-Coupled Receptors Drive Ca&lt;sup&gt;2+&lt;/sup&gt; Dysregulation Leading to Secondary Brain Injury in the Mouse Model.

Journal: Translational stroke research

Status: data only, 1 dataset cited

[34817] doi:10.1016/j.heliyon.2023.e18307 [paper, data]

Insula neuroanatomical networks predict interoceptive awareness.

Journal: Heliyon

Status: data only, 1 dataset cited

[34818] doi:10.1016/j.isci.2023.107415 [paper]

A Frizzled4-LRP5 agonist promotes blood-retina barrier function by inducing a Norrin-like transcriptional response.

Journal: iScience

Status: code on request

[34819] doi:10.1016/j.isci.2023.107418 [paper]

The biological effects of terahertz wave radiation-induced injury on neural stem cells.

Journal: iScience

Status: code on request

[34820] doi:10.1016/j.ultrasmedbio.2023.06.001 [paper, data]

Dual-Probe Transcranial Full-Waveform Inversion: A Brain Phantom Feasibility Study.

Journal: Ultrasound in medicine & biology

Status: data only, 1 dataset cited

[34821] doi:10.1038/s41467-023-39857-9 [paper, data]

Vγ1 and Vγ4 gamma-delta T cells play opposing roles in the immunopathology of traumatic brain injury in males.

Journal: Nature communications

Status: data only, 1 dataset cited

[34822] doi:10.1038/s41467-023-39872-w [paper, repository]

Phonemic segmentation of narrative speech in human cerebral cortex.

Journal: Nature communications

Authors' code: theunissenlab/phoneme_segmentation (no license)

Status: code verified, 24 files readable, 3 matches

[34823] doi:10.1038/s41467-023-39971-8 [paper, data]

Conformational trajectory of allosteric gating of the human cone photoreceptor cyclic nucleotide-gated channel.

Journal: Nature communications

Status: data only, 10 datasets cited

[34824] doi:10.1038/s41598-023-38841-z [paper, data]

No effects of 1 Hz offline TMS on performance in the stop-signal game.

Journal: Scientific reports

Status: data only, 1 dataset cited

[34825] doi:10.1038/s42003-023-05114-4 [paper]

Cloxyquin activates hTRESK by allosteric modulation of the selectivity filter.

Journal: Communications biology

Status: code on request

[34826] doi:10.1073/pnas.2216658120 [paper, repository]

MicroRNA-335-5p suppresses voltage-gated sodium channel expression and may be a target for seizure control.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: niamhconno/Heiland-et-al-2022 (no license)

Status: code verified, 2 files readable, 3 matches

[34827] doi:10.1101/2023.07.15.549123 [paper, repository]

Prior probability cues bias sensory encoding with increasing task exposure

Journal: bioRxiv (preprint)

Authors' code: OSF b92wm (no license)

Status: code verified, 1 file readable

[34828] doi:10.1101/2023.07.17.549294 [paper, data]

Combining Magnetoencephalography with Telemetric Streaming of Intracranial Recordings and Deep Brain Stimulation – a Feasibility Study

Journal: bioRxiv (preprint)

Status: data only, 3 datasets cited

[34829] doi:10.1186/s13073-023-01205-3 [paper, data]

Single-cell RNA-seq reveals alterations in peripheral CX3CR1 and nonclassical monocytes in familial tauopathy.

Journal: Genome medicine

Status: data only, 5 datasets cited

[34830] doi:10.1186/s40478-023-01603-z [paper, repository]

Alterations in iron content, iron-regulatory proteins and behaviour without tau pathology at one year following repetitive mild traumatic brain injury.

Journal: Acta neuropathologica communications

Authors' code: sydneyjuan/rnaseq_r-mtbi (no license)

Status: code verified, 1 file readable, 3 matches

[34831] doi:10.1186/s42234-023-00117-2 [paper, data]

Stimulation parameters for directional vagus nerve stimulation.

Journal: Bioelectronic medicine

Status: data only, 1 dataset cited

[34832] doi:10.3389/fninf.2023.1174156 [paper, repository]

NIDM-Terms: community-based terminology management for improved neuroimaging dataset descriptions and query.

Journal: Frontiers in neuroinformatics

Authors' code: incf-nidash/PyNIDM (Apache-2.0), ReproNim/reproschema-py (Apache-2.0)

Status: code verified, 131 files readable, 8 matches

[34833] doi:10.3389/fphys.2023.1205162 [paper, repository]

Sex differences in pituitary corticotroph excitability.

Journal: Frontiers in physiology

Authors' code: nicolaromano/Duncan2023_M_vs_F (GPL-3.0)

Status: code verified, 4 files readable, 2 matches

[34834] doi:10.3390/brainsci13071086 [paper, data]

The Interaction of Glycemia with Anxiety and Depression Is Related to Altered Cerebellar and Cerebral Functional Correlations.

Journal: Brain sciences

Status: data only, 2 datasets cited

[34835] doi:10.3390/jimaging9070145 [paper, repository]

Semi-Automatic GUI Platform to Characterize Brain Development in Preterm Children Using Ultrasound Images.

Journal: Journal of imaging

Authors' code: Derther/GUI-semi-automatic-application (no license)

Status: dead link

[34836] doi:10.7554/elife.80263 [paper, repository]

State-dependent coupling of hippocampal oscillations.

Journal: eLife

Authors' code: brijeshmodi12/network_state_space (no license)

Status: code verified, 444 files readable, 15 matches

Monday, 17 July 2023 (33 papers)

[34837] doi:10.1002/cam4.6363 [paper, repository]

Deep learning-based prediction of H3K27M alteration in diffuse midline gliomas based on whole-brain MRI.

Journal: Cancer medicine

Authors' code: Bowen-Huang924/MRI-MAE-pre-training (no license)

Status: code verified, 19 files readable, 1 match

[34838] doi:10.1002/hbm.26416 [paper, repository]

Mapping tissue microstructure across the human brain on a clinical scanner with soma and neurite density image metrics.

Journal: Human brain mapping

Authors' code: ekaden/smt (BSD-2-Clause)

Status: code verified, 41 files readable

[34839] doi:10.1002/hbm.26417 [paper, repository]

Sex-related patterns in the electroencephalogram and their relevance in machine learning classifiers.

Journal: Human brain mapping

Authors' code: Zenodo 8098388 (CC-BY-4.0)

Status: code verified, 18 files readable, 6 matches

[34840] doi:10.1007/s00221-023-06670-1 [paper, repository]

Electrophysiological signatures of temporal context in the bisection task.

Journal: Experimental brain research

Authors' code: doi:10.12751/g-node.7snfwg (no license)

Status: code verified

[34841] doi:10.1007/s12035-023-03456-y [paper, data]

Extracellular Vesicle-Serpine-1 Affects Neural Progenitor Cell Mitochondrial Networks and Synaptic Density: Modulation by Amyloid Beta and HIV-1.

Journal: Molecular neurobiology

Status: data only, 6 datasets cited

[34842] doi:10.1016/j.celrep.2023.112801 [paper, data]

Disruption of neuronal RHEB signaling impairs oligodendrocyte differentiation and myelination through mTORC1-DLK1 axis.

Journal: Cell reports

Status: code on request, 1 dataset cited

[34843] doi:10.1016/j.conctc.2023.101191 [paper]

A randomized controlled trial protocol for people with traumatic brain injury enrolled in a telehealth delivered diabetes prevention program (tGLB-TBI).

Journal: Contemporary clinical trials communications

Status: code on request

[34844] doi:10.1016/j.dcn.2023.101280 [paper, repository]

Individual differences in time-varying and stationary brain connectivity during movie watching from childhood to early adulthood: Age, sex, and behavioral associations.

Journal: Developmental cognitive neuroscience

Authors' code: OSF bwzsd (no license)

Status: code verified, 10 files readable

[34845] doi:10.1016/j.heliyon.2023.e18188 [paper, data]

A bioinformatic investigation of proteasome and autophagy expression in the central nervous system.

Journal: Heliyon

Status: data only, 2 datasets cited

[34846] doi:10.1016/j.isci.2023.107238 [paper]

Visualization of <i>trans</i>-interactions of a protocadherin-α between processes originating from single neurons.

Journal: iScience

Status: code on request

[34847] doi:10.1016/j.isci.2023.107387 [paper, repository]

Auditory white noise exposure results in intrinsic cortical excitability changes.

Journal: iScience

Authors' code: openaccessrepository.it/record/77097 (no license)

Status: code verified

[34848] doi:10.1016/j.isci.2023.107400 [paper, repository]

Dopamine-mediated striatal activity and function is enhanced in GlyRα2 knockout animals.

Journal: iScience

Authors' code: ome/bioformats (GPL-2.0)

Status: code verified, 702 files readable, 3 matches

[34849] doi:10.1038/s41540-023-00295-4 [paper, repository]

Computational modeling of AMPK and mTOR crosstalk in glutamatergic synapse calcium signaling.

Journal: NPJ systems biology and applications

Authors' code: aleung15/AMPKmTOR2022 (no license)

Status: code verified, 22 files readable, 8 matches

[34850] doi:10.1038/s41587-023-01798-5 [paper, repository]

Young glial progenitor cells competitively replace aged and diseased human glia in the adult chimeric mouse brain.

Journal: Nature biotechnology

Authors' code: severinstrobl/overlap (MIT), CTNGoldmanLab/HD_Competition_2022 (no license)

Status: code verified, 51 files readable, 11 matches

[34851] doi:10.1038/s41593-023-01376-7 [paper, repository]

Robust estimation of cortical similarity networks from brain MRI.

Journal: Nature neuroscience

Authors' code: isebenius/MIND (no license), Zenodo 7974716 (other-open)

Status: code verified, 14 files readable, 7 matches

[34852] doi:10.1038/s41598-023-38430-0 [paper, repository]

Unsupervised abnormality detection in neonatal MRI brain scans using deep learning.

Journal: Scientific reports

Authors' code: jraad/unsupervised_neonatal_anomaly_detection (Apache-2.0)

Status: code verified, 6 files readable, 1 match

[34853] doi:10.1038/s41598-023-38558-z [paper, repository]

Application of quantum machine learning using quantum kernel algorithms on multiclass neuron M-type classification.

Journal: Scientific reports

Authors' code: xaviervasques/hephaistos (Apache-2.0)

Status: code verified, 18 files readable, 3 matches

[34854] doi:10.1038/s42003-023-05121-5 [paper, repository]

Arousal state transitions occlude sensory-evoked neurovascular coupling in neonatal mice.

Journal: Communications biology

Authors' code: Zenodo 7809100 (CC0-1.0), Zenodo 7809099 (CC0-1.0)

Status: code verified, 70 files readable, 13 matches

[34855] doi:10.1038/s42255-023-00835-6 [paper, data]

Fatty acid oxidation organizes mitochondrial supercomplexes to sustain astrocytic ROS and cognition.

Journal: Nature metabolism

Status: data only, 1 dataset cited

[34856] doi:10.1073/pnas.2221120120 [paper, data]

Ancient vertebrate dermal armor evolved from trunk neural crest.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[34857] doi:10.1093/texcom/tgad012 [paper, repository]

Structural-and-dynamical similarity predicts compensatory brain areas driving the post-lesion functional recovery mechanism.

Journal: Cerebral cortex communications

Authors' code: dynamicdip/Virtual-Lesion-Project-CBDL (no license)

Status: code verified, 12 files readable, 3 matches

[34858] doi:10.1117/1.jbo.28.7.075002 [paper]

Robustness of tissue oxygenation estimates by continuous wave space-resolved near infrared spectroscopy.

Journal: Journal of biomedical optics

Status: code on request

[34859] doi:10.1117/1.jmi.10.4.044502 [paper, repository]

Stroke-GFCN: ischemic stroke lesion prediction with a fully convolutional graph network.

Journal: Journal of medical imaging (Bellingham, Wash.)

Authors' code: aiporre/gcn_segmentation (MIT)

Status: code verified, 145 files readable, 1 match

[34860] doi:10.1172/jci163391 [paper, repository]

Anoctamin 4 channel currents activate glucose-inhibited neurons in the mouse ventromedial hypothalamus during hypoglycemia.

Journal: The Journal of clinical investigation

Authors' code: alanrupp/affinati-elife-2021 (no license)

Status: code verified, 28 files readable, 2 matches

[34861] doi:10.1371/journal.pbio.3002200 [paper, repository]

Secondary motor integration as a final arbiter in sensorimotor decision-making.

Journal: PLoS biology

Authors' code: OSF dwugq (no license)

Status: code verified, 18 files readable, 3 matches

[34862] doi:10.1523/eneuro.0484-22.2023 [paper, repository]

Exploring the Neural Processes behind Narrative Engagement: An EEG Study.

Journal: eNeuro

Authors' code: hosseindini/Neural-Processes-behind-Narrative-Engagement (no license)

Status: code verified, 13 files readable, 6 matches

[34863] doi:10.3389/fgene.2023.1222619 [paper, data]

Epigenetic associations with adolescent grey matter maturation and cognitive development.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[34864] doi:10.3389/fneur.2023.1203375 [paper, data]

Artificial intelligence and bioinformatics analyze markers of children's transcriptional genome to predict autism spectrum disorder.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[34865] doi:10.3389/fnins.2023.1211608 [paper, data]

Ultrasound stimulation of the vagal nerve improves acute septic encephalopathy in mice.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[34866] doi:10.3389/fpsyt.2023.1158569 [paper, repository]

A biomarker discovery framework for childhood anxiety.

Journal: Frontiers in psychiatry

Authors' code: pik-copan/pyunicorn (BSD-3-Clause)

Status: code verified, 94 files readable

[34867] doi:10.3390/s23146450 [paper, repository]

CoSOV1Net: A Cone- and Spatial-Opponent Primary Visual Cortex-Inspired Neural Network for Lightweight Salient Object Detection.

Journal: Sensors (Basel, Switzerland)

Authors' code: mmcheng.net/code-data (no license)

Status: code verified

[34868] doi:10.7554/elife.64904 [paper, repository]

The &lt;i&gt;Drosophila&lt;/i&gt; Nab2 RNA binding protein inhibits m&lt;sup&gt;6&lt;/sup&gt;A methylation and male-specific splicing of &lt;i&gt;Sex lethal&lt;/i&gt; transcript in female neuronal tissue.

Journal: eLife

Authors' code: rnaseqlib.readthedocs.io (no license)

Status: code verified

[34869] doi:10.7554/elife.77513 [paper, repository]

Non-shared coding of observed and executed actions prevails in macaque ventral premotor mirror neurons.

Journal: eLife

Authors' code: Zenodo 8047592 (CC-BY-4.0)

Status: code verified, 46 files readable, 6 matches

Sunday, 16 July 2023 (2 papers)

[34870] doi:10.1016/j.bioactmat.2023.07.009 [paper, repository]

FUS-mediated HypEVs: Neuroprotective effects against ischemic stroke.

Journal: Bioactive materials

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[34871] doi:10.3390/brainsci13071077 [paper, data]

Reminders of Mortality: Investigating the Effects of Different Mortality Saliences on Somatosensory Neural Activity.

Journal: Brain sciences

Status: data only, 1 dataset cited

Saturday, 15 July 2023 (9 papers)

[34872] doi:10.1007/s00401-023-02612-x [paper, data]

Vagus nerve inflammation contributes to dysautonomia in COVID-19.

Journal: Acta neuropathologica

Status: code on request, 1 dataset cited

[34873] doi:10.1016/j.dib.2023.109411 [paper, data]

Dataset of acute oral toxicity and subacute neurotoxicity risk assessments of flavonoid-enriched fraction extracted from <i>Oroxylum Indicum</i> on Sprague Dawley rats.

Journal: Data in brief

Status: data only, 1 dataset cited

[34874] doi:10.1016/j.isci.2023.107401 [paper]

5-HT_1A and 5-HT_2B receptor interaction and co-clustering regulate serotonergic neuron excitability.

Journal: iScience

Status: code on request

[34875] doi:10.1016/j.omtm.2023.07.005 [paper]

iPSC-derived mesenchymal stem cells attenuate cerebral ischemia-reperfusion injury by inhibiting inflammatory signaling and oxidative stress.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[34876] doi:10.1016/j.xpro.2023.102413 [paper]

Generation of mouse hippocampal brain organoids from primary embryonic neural stem cells.

Journal: STAR protocols

Status: code on request

[34877] doi:10.1038/s41420-023-01547-2 [paper, data]

Loss of PML nuclear bodies in familial amyotrophic lateral sclerosis-frontotemporal dementia.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[34878] doi:10.1038/s41598-023-38513-y [paper, repository]

Identifying oscillatory brain networks with hidden Gaussian graphical spectral models of MEEG.

Journal: Scientific reports

Authors' code: CCC-members/MEEG_Source_Connectivity_SoftPack (no license), CCC-members/BC-VARETA_Toolbox (no license)

Status: code verified, 968 files readable, 19 matches

[34879] doi:10.1038/s41598-023-38637-1 [paper, data]

The human acetylcholinesterase C-terminal T30 peptide activates neuronal growth through alpha 7 nicotinic acetylcholine receptors and the mTOR pathway.

Journal: Scientific reports

Status: data only, 1 dataset cited

[34880] doi:10.1101/2023.07.14.548952 [paper, repository]

Pinpoint: trajectory planning for multi-probe electrophysiology and injections in an interactive web-based 3D environment

Journal: bioRxiv (preprint)

Authors' code: billkarsh.github.io/spikeglx (no license), stevenjwest/brainregister (GPL-3.0)

Status: code verified, 6 files readable

Friday, 14 July 2023 (21 papers)

[34881] doi:10.1002/hbm.26403 [paper, repository]

The robustness of persistent homology of brain networks to data acquisition-related non-neural variability in resting state fMRI.

Journal: Human brain mapping

Authors' code: harp-lab/brainPH (MIT)

Status: code verified, 28 files readable, 2 matches

[34882] doi:10.1007/s00401-023-02608-7 [paper]

Recurrent atypical teratoid/rhabdoid tumors (AT/RT) reveal discrete features of progression on histology, epigenetics, copy number profiling, and transcriptomics.

Journal: Acta neuropathologica

Status: data only

[34883] doi:10.1007/s10548-023-00988-3 [paper, repository]

Normative Intercorrelations Between EEG Microstate Characteristics.

Journal: Brain topography

Authors' code: OSF 39w5h (no license)

Status: code verified

[34884] doi:10.1016/j.celrep.2023.112772 [paper, data]

Numerical discrimination in Drosophila melanogaster.

Journal: Cell reports

Status: code on request, 1 dataset cited

[34885] doi:10.1016/j.cub.2023.06.044 [paper, repository]

Wild nightingales flexibly match whistle pitch in real time.

Journal: Current biology : CB

Authors' code: vallentinlab/NGwhistles (no license)

Status: code verified, 21 files readable

[34886] doi:10.1038/s41467-023-39814-6 [paper, repository]

Conformal in-ear bioelectronics for visual and auditory brain-computer interfaces.

Journal: Nature communications

Authors' code: Zenodo 7748035 (CC-BY-4.0)

Status: code verified

[34887] doi:10.1038/s41467-023-39862-y [paper, repository]

The default network dominates neural responses to evolving movie stories.

Journal: Nature communications

Authors' code: dblabs-mcgill-mila/hmm_forrest_nlp (no license)

Status: code verified, 9 files readable, 5 matches

[34888] doi:10.1038/s41467-023-39955-8 [paper, data]

The head mesodermal cell couples FMRFamide neuropeptide signaling with rhythmic muscle contraction in C. elegans.

Journal: Nature communications

Status: data only, 1 dataset cited

[34889] doi:10.1038/s42003-023-05107-3 [paper, repository]

Atlasing white matter and grey matter joint contributions to resting-state networks in the human brain.

Journal: Communications biology

Authors' code: Zenodo 5837556 (CC-BY-4.0), Zenodo 5078062 (other-open)

Status: code verified, 12 files readable

[34890] doi:10.1038/s42003-023-05119-z [paper, repository]

Dynamic network properties of the superior temporal gyrus mediate the impact of brain age gap on chronic aphasia severity.

Journal: Communications biology

Authors' code: neurolabusc/nii_preprocess (no license), james-cole/brainageR (LGPL-3.0), fil.ion.ucl.ac.uk/spm/software (no license)

Status: code verified, 99 files readable, 10 matches

[34891] doi:10.1186/s40658-023-00562-7 [paper, repository]

Estimation of brain amyloid accumulation using deep learning in clinical [¹¹C]PiB PET imaging.

Journal: EJNMMI physics

Authors' code: CAAI/amyloidAI (no license)

Status: code verified, 7 files readable, 2 matches

[34892] doi:10.1523/eneuro.0075-23.2023 [paper]

Heard or Understood? Neural Tracking of Language Features in a Comprehensible Story, an Incomprehensible Story and a Word List.

Journal: eNeuro

Status: code on request

[34893] doi:10.3233/adr-230002 [paper, repository]

Precipitating Mechanisms of Falls in Preclinical Alzheimer's Disease.

Journal: Journal of Alzheimer's disease reports

Authors' code: ysu001/PUP (BSD-3-Clause)

Status: code verified, 277 files readable

[34894] doi:10.3389/fgene.2023.1114749 [paper, repository]

A protein-coding gene expression atlas from the brain of pregnant and non-pregnant goats.

Journal: Frontiers in genetics

Authors' code: gpertea/stringtie (MIT)

Status: code verified, 380 files readable, 1 match

[34895] doi:10.3389/fnagi.2023.1216509 [paper, data]

Alterations of gut microbiota are associated with brain structural changes in the spectrum of Alzheimer's disease: the SILCODE study in Hainan cohort.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[34896] doi:10.3389/fneur.2023.1221775 [paper, data]

Localized proteomic differences in the choroid plexus of Alzheimer's disease and epilepsy patients.

Journal: Frontiers in neurology

Status: data only, 3 datasets cited

[34897] doi:10.3389/fpsyt.2023.1156524 [paper, data]

The influence of tissue pH and RNA integrity number on gene expression of human postmortem brain.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[34898] doi:10.3390/genes14071448 [paper, data]

Isoflurane Anesthesia's Impact on Gene Expression Patterns of Rat Brains in an Ischemic Stroke Model.

Journal: Genes

Status: data only, 1 dataset cited

[34899] doi:10.3390/s23146420 [paper, data]

Perceptual Integration Compensates for Attention Deficit in Elderly during Repetitive Auditory-Based Sensorimotor Task.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[34900] doi:10.7150/thno.79898 [paper]

Focused ultrasound mitigates pathology and improves spatial memory in Alzheimer's mice and patients.

Journal: Theranostics

Status: code on request

[34901] doi:10.7554/elife.86327 [paper, repository]

Gaze patterns and brain activations in humans and marmosets in the Frith-Happé theory-of-mind animation task.

Journal: eLife

Authors' code: audreydureux/theory-of-mind_human_marmosets_paper (no license)

Status: code verified, 1 file readable

Thursday, 13 July 2023 (32 papers)

[34902] doi:10.1002/glia.24439 [paper]

Deletion of aquaporin-4 improves capillary blood flow distribution in brain edema.

Journal: Glia

Status: code on request

[34903] doi:10.1016/j.cortex.2023.04.019 [paper, data]

Reassessing referral of touch following peripheral deafferentation: The role of contextual bias.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Status: data only, 1 dataset cited

[34904] doi:10.1016/j.crmeth.2023.100532 [paper]

A fully automated home cage for long-term continuous phenotyping of mouse cognition and behavior.

Journal: Cell reports methods

Status: code on request

[34905] doi:10.1016/j.isci.2023.107373 [paper]

Control by the brain of vitamin A homeostasis.

Journal: iScience

Status: code on request

[34906] doi:10.1016/j.neuroimage.2023.120275 [paper, repository]

Adult lifespan trajectories of neuromagnetic signals and interrelations with cortical thickness.

Journal: NeuroImage

Authors' code: chstier/Lifespan_MEG (GPL-2.0)

Status: code verified, 506 files readable, 11 matches

[34907] doi:10.1016/j.nicl.2023.103472 [paper, repository]

ComBat Harmonization: Empirical Bayes versus fully Bayes approaches.

Journal: NeuroImage. Clinical

Authors' code: batmanlab/BayesComBat (no license)

Status: code verified, 3 files readable, 2 matches

[34908] doi:10.1016/j.stemcr.2023.06.007 [paper, repository]

A defined roadmap of radial glia and astrocyte differentiation from human pluripotent stem cells.

Journal: Stem cell reports

Authors' code: cemalley/Jovanovic_methods (Apache-2.0), jaro-slamecka/Jovanovic_astrocyte_scRNA-seq (no license)

Status: code verified, 41 files readable, 5 matches

[34909] doi:10.1038/s41398-023-02560-w [paper]

Irradiation and lithium treatment alter the global DNA methylation pattern and gene expression underlying a shift from gliogenesis towards neurogenesis in human neural progenitors.

Journal: Translational psychiatry

Status: data only

[34910] doi:10.1038/s41467-023-39667-z [paper, repository]

Threat gates visual aversion via theta activity in Tachykinergic neurons.

Journal: Nature communications

Authors' code: hzeller/rpi-rgb-led-matrix (GPL-2.0), mtsuji172/puff_to_visual_aversion (no license), Zenodo 8004654 (other-open)

Status: code verified, 301 files readable, 8 matches

[34911] doi:10.1038/s41467-023-39732-7 [paper, repository]

Cell-type-specific plasticity of inhibitory interneurons in the rehabilitation of auditory cortex after peripheral damage.

Journal: Nature communications

Authors' code: Zenodo 7942716 (other-open), Zenodo 8018820 (CC-BY-4.0), gregoryhandy/rehabilitation_of_auditory_cortex (BSD-2-Clause)

Status: code verified, 139 files readable, 8 matches

[34912] doi:10.1038/s41467-023-39896-2 [paper, data]

Label-free adaptive optics single-molecule localization microscopy for whole zebrafish.

Journal: Nature communications

Status: data only, 1 dataset cited

[34913] doi:10.1038/s41467-023-39946-9 [paper, repository]

Genes associated with cognitive ability and HAR show overlapping expression patterns in human cortical neuron types.

Journal: Nature communications

Authors' code: AllenInstitute/MIES (BSD-2-Clause), AnnaGalakhova/Driessens_Galakhova_Heyer_2022 (no license), Zenodo 8005426 (other-open)

Status: code verified, 83 files readable, 10 matches

[34914] doi:10.1038/s41531-023-00553-6 [paper, repository]

Cortex-wide topography of 1/f-exponent in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: paschels/PD_one_over_f (GPL-3.0)

Status: code verified, 6 files readable, 8 matches

[34915] doi:10.1038/s41531-023-00556-3 [paper, repository]

Two distinct trajectories of clinical and neurodegeneration events in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: ucl-pond/pySuStaIn (MIT)

Status: code verified, 19 files readable, 5 matches

[34916] doi:10.1038/s41556-023-01178-w [paper, data]

The Troyer syndrome protein spartin mediates selective autophagy of lipid droplets.

Journal: Nature cell biology

Status: data only, 1 dataset cited

[34917] doi:10.1038/s41592-023-01938-4 [paper, repository]

SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks.

Journal: Nature methods

Authors' code: aertslab/scenicplus (other), scenicplus.readthedocs.io (no license), aertslab/cisTopic (no license), aertslab/create_cisTarget_databases (no license), ethz-asl/libpointmatcher (BSD-3-Clause), aertslab/pycisTopic (other), aertslab/pycistarget (other), pycistopic.readthedocs.io (no license), pycistarget.readthedocs.io (no license), ghuls/cluster-buster (no license), aertslab/scenicplus_analyses (no license), Zenodo 7857024 (other-open), Zenodo 7857022 (other-open), Zenodo 7857017 (other-open)

Status: code verified, 626 files readable, 40 matches

[34918] doi:10.1038/s41746-023-00868-x [paper, data]

Challenges of implementing computer-aided diagnostic models for neuroimages in a clinical setting.

Journal: NPJ digital medicine

Status: data only, 1 dataset cited

[34919] doi:10.1038/s43587-023-00449-3 [paper, repository]

Chromatin accessibility dynamics of neurogenic niche cells reveal defects in neural stem cell adhesion and migration during aging.

Journal: Nature aging

Authors' code: kundajelab/atac_dnase_pipelines (BSD-3-Clause), kundajelab/retina-models (MIT), brunetlab/Yeo_RW_NSC_ATACseq (no license)

Status: code verified, 96 files readable, 38 matches

[34920] doi:10.1186/s40359-023-01230-2 [paper, repository]

Developing behavioural activation for people with acquired brain injury: a qualitative interpretive description study of barriers and facilitators to activity engagement.

Journal: BMC psychology

Authors' code: OSF btwg3 (no license), OSF gmabq (no license)

Status: empty repository

[34921] doi:10.1242/dev.201509 [paper, data]

SIX1+PAX3+ identify a progenitor for myogenic lineage commitment from hPSCs.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[34922] doi:10.1371/journal.pone.0287866 [paper, data]

Can static Rorschach stimuli perceived as in motion affect corticospinal excitability?

Journal: PloS one

Status: data only, 1 dataset cited

[34923] doi:10.1371/journal.pone.0288488 [paper, repository]

The PiNe box: Development and validation of an electronic device to time-lock multimodal responses to sensory stimuli in hospitalised infants.

Journal: PloS one

Authors' code: supp:PMC10343045/pone.0288488.s005.zip (no license), supp:PMC10343045/pone.0288488.s006.m (no license)

Status: code verified, 1 file readable, 1 match

[34924] doi:10.1371/journal.pone.0288658 [paper, data]

Feature interaction network based on hierarchical decoupled convolution for 3D medical image segmentation.

Journal: PloS one

Status: data only, 1 dataset cited

[34925] doi:10.1523/eneuro.0204-22.2023 [paper, data]

Different Forms of Plasticity Interact in Adult Humans.

Journal: eNeuro

Status: data only, 2 datasets cited

[34926] doi:10.3389/fendo.2023.1131995 [paper, repository]

Hormonal contraceptive exposure relates to changes in resting state functional connectivity of anterior cingulate cortex and amygdala.

Journal: Frontiers in endocrinology

Authors' code: OSF 5ezw9 (no license)

Status: code verified, 1 file readable

[34927] doi:10.3389/fnagi.2023.1201142 [paper, data]

Bioinformatics analysis and prediction of Alzheimer's disease and alcohol dependence based on Ferroptosis-related genes.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[34928] doi:10.3389/fncel.2023.1153970 [paper, repository]

Different resting membrane potentials in posterior parietal cortex and prefrontal cortex in the view of recurrent synaptic strengths and neural network dynamics.

Journal: Frontiers in cellular neuroscience

Authors' code: EPFL-LCN/neuronaldynamics-exercises (GPL-2.0)

Status: code verified, 61 files readable, 5 matches

[34929] doi:10.3389/fncir.2023.1210057 [paper, repository]

Distinct topographic organization and network activity patterns of corticocollicular neurons within layer 5 auditory cortex.

Journal: Frontiers in neural circuits

Authors' code: HirtzLab/Imaging_auditory_corticofugal_L5 (GPL-3.0)

Status: code verified, 33 files readable, 12 matches

[34930] doi:10.3389/fnhum.2023.1170419 [paper, repository]

Large-scale brain networks and intra-axial tumor surgery: a narrative review of functional mapping techniques, critical needs, and scientific opportunities.

Journal: Frontiers in human neuroscience

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 3 matches

[34931] doi:10.3389/fnins.2023.1221970 [paper, repository]

Medical prediction from missing data with max-minus negative regularized dropout.

Journal: Frontiers in neuroscience

Authors' code: wangyunjeff/ResNet50-MNIST-pytorch (no license), microsoft/Swin-Transformer (MIT)

Status: code verified, 39 files readable, 2 matches

[34932] doi:10.3389/fpsyt.2023.1160209 [paper, data]

Another in need enhances prosociality and modulates frontal theta oscillations in young adults.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[34933] doi:10.7554/elife.83843 [paper, repository]

Cerebral chemoarchitecture shares organizational traits with brain structure and function.

Journal: eLife

Authors' code: netneurolab/hansen_receptors (CC-BY-NC-SA-4.0), MICA-MNI/ENIGMA (BSD-3-Clause), cng-lab/cngopen (MIT)

Status: code verified, 163 files readable, 11 matches

Wednesday, 12 July 2023 (24 papers, 11 on this page)

[34934] doi:10.1002/hbm.26404 [paper, repository]

Brain volumes in alcohol use disorder: Do females and males differ? A whole-brain magnetic resonance imaging mega-analysis.

Journal: Human brain mapping

Authors' code: OSF detwu (no license)

Status: code verified, 8 files readable

[34935] doi:10.1002/hbm.26414 [paper, repository]

Multi-scale structural alterations of the thalamus and basal ganglia in focal epilepsy using 7T MRI.

Journal: Human brain mapping

Authors' code: thalamicseg/thomas_new (no license), khanlab/surfmorph (GPL-3.0), royhaast/smk-epilepsy-7T-sctx (no license)

Status: code verified, 47 files readable, 4 matches

[34936] doi:10.1007/s00330-023-09904-6 [paper, repository]

Focused view CT angiography for selective visualization of stroke related arteries: technical feasibility.

Journal: European radiology

Authors' code: 0xC4/focused-view (GPL-3.0)

Status: code verified, 12 files readable, 3 matches

[34937] doi:10.1007/s00415-023-11863-3 [paper]

Cerebral lesions sites in neurosarcoidosis: a lesion mapping study.

Journal: Journal of neurology

Status: code on request

[34938] doi:10.1016/j.celrep.2023.112774 [paper]

Evidence for a clathrin-independent endocytic pathway for APP internalization in the neuronal somatodendritic compartment.

Journal: Cell reports

Status: code on request

[34939] doi:10.1016/j.heliyon.2023.e18158 [paper]

Early-phase rotator training impairs tissue repair and functional recovery after spinal cord injury.

Journal: Heliyon

Status: data only

[34940] doi:10.1021/acsphyschemau.3c00021 [paper, data]

Disrupting Dimeric β-Amyloid by Electric Fields.

Journal: ACS physical chemistry Au

Status: data only, 2 datasets cited

[34941] doi:10.1038/s41398-023-02528-w [paper, repository]

Physical symptoms and brain morphology: a population neuroimaging study in 12,286 pre-adolescents.

Journal: Translational psychiatry

Authors' code: FerEstevezLopez/doi_10.1038-s41398-023-02528-w (no license)

Status: empty repository

[34942] doi:10.1038/s41467-023-39545-8 [paper, repository]

External globus pallidus input to the dorsal striatum regulates habitual seeking behavior in male mice.

Journal: Nature communications

Authors' code: Zenodo 7908668 (CC-BY-4.0)

Status: code verified, 9 files readable

[34943] doi:10.1038/s41586-023-06188-0 [paper, repository]

Mast cells link immune sensing to antigen-avoidance behaviour.

Journal: Nature

Authors' code: robinthiele/AAPIA (no license)

Status: code verified, 3 files readable, 5 matches

[34944] doi:10.1038/s41597-023-02330-9 [paper, repository]

Magnetic resonance imaging datasets with anatomical fiducials for quality control and registration.

Journal: Scientific data

Authors' code: afids (no license), afids/afids-validator (GPL-3.0), Zenodo 7871820 (GPL-2.0), Zenodo 7871601 (no license), Zenodo 7641090 (other-open), afids/afids-protocol (GPL-3.0)

Status: code verified, 208 files readable, 5 matches

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