Every paper, by date: page 158

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 158 of 200: 1 July 2023 to 23 June 2023.

Saturday, 1 July 2023 (32 papers, 29 on this page)

[35169] doi:10.1002/dad2.12477 [paper, repository]

Combining aperiodic 1/f slopes and brain simulation: An EEG/MEG proxy marker of excitation/inhibition imbalance in Alzheimer's disease.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: pablomc88/EEG-and-MEG-Proxy-Marker-of-Excitation-Inhibition-Imbalance-in-Alzheimer-s-Disease (no license)

Status: code verified, 5 files readable, 4 matches

[35170] doi:10.1016/j.brs.2023.08.001 [paper, repository]

The effect of pulse shape in theta-burst stimulation: Monophasic vs biphasic TMS.

Journal: Brain stimulation

Authors' code: OSF 9e62f (no license)

Status: code verified, 3 files readable, 5 matches

[35171] doi:10.1016/j.celrep.2023.112725 [paper, repository]

Super-resolution imaging unveils the self-replication of tau aggregates upon seeding.

Journal: Cell reports

Authors' code: Eric-Kobayashi/SR_toolkit (no license)

Status: code verified, 19 files readable, 1 match

[35172] doi:10.1016/j.isci.2023.107262 [paper, repository]

Large-scale survey of excitatory synapses reveals sublamina-specific and asymmetric synapse disassembly in a neurodegenerative circuit.

Journal: iScience

Authors' code: lucadellasantina (no license)

Status: code verified

[35173] doi:10.1093/brain/awac464 [paper, repository]

Mitochondrial DNA heteroplasmy distinguishes disease manifestation in PINK1/PRKN-linked Parkinson's disease.

Journal: Brain : a journal of neurology

Authors' code: rrwick/Filtlong (GPL-3.0)

Status: code verified, 22 files readable

[35174] doi:10.1093/brain/awad145 [paper, repository]

Data-driven neuropathological staging and subtyping of TDP-43 proteinopathies.

Journal: Brain : a journal of neurology

Authors' code: ucl-pond/pySuStaIn (MIT)

Status: code verified, 19 files readable, 2 matches

[35175] doi:10.1093/cercor/bhad155 [paper, repository]

Unexpected sound omissions are signaled in human posterior superior temporal gyrus: an intracranial study.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 7486842 (MIT), neurotechcenter/vera (MIT)

Status: code verified, 998 files readable, 2 matches

[35176] doi:10.1093/cercor/bhad189 [paper, repository]

Exploring the internal forward model: action-effect prediction and attention in sensorimotor processing.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF eru6x (no license)

Status: code found, still to be checked

[35177] doi:10.1093/database/baad046 [paper, data]

APDB: a database on air pollutant characterization and similarity prediction.

Journal: Database : the journal of biological databases and curation

Status: data only, 1 dataset cited

[35178] doi:10.1093/gbe/evad117 [paper, repository]

Brain Gene Expression of Foraging Behavior and Social Environment in Ceratina calcarata.

Journal: Genome biology and evolution

Authors' code: huisken/Brain-gene-expression-foraging-Ceratina-calcarata (no license)

Status: code verified, 1 file readable, 1 match

[35179] doi:10.1093/gbe/evad123 [paper, repository]

Trans-Acting Genotypes Associated with mRNA Expression Affect Metabolic and Thermal Tolerance Traits.

Journal: Genome biology and evolution

Authors' code: mxd1288/Genotypic_drivers (no license)

Status: code verified, 2 files readable, 1 match

[35180] doi:10.1093/hmg/ddad073 [paper, data]

Elucidating the toxic effect and disease mechanisms associated with Lyso-Gb3 in Fabry disease.

Journal: Human molecular genetics

Status: data only, 1 dataset cited

[35181] doi:10.1093/nar/gkad413 [paper, repository]

SMDB: a Spatial Multimodal Data Browser.

Journal: Nucleic acids research

Authors' code: lilab-bcb/cirrocumulus (BSD-3-Clause)

Status: code verified, 167 files readable

[35182] doi:10.1093/nar/gkad468 [paper, repository]

Multidimensional profiling reveals GATA1-modulated stage-specific chromatin states and functional associations during human erythropoiesis.

Journal: Nucleic acids research

Authors' code: deeptools/pyGenomeTracks (GPL-3.0)

Status: code verified, 56 files readable, 3 matches

[35183] doi:10.1093/plphys/kiad214 [paper, repository]

Large root cortical cells and reduced cortical cell files improve growth under suboptimal nitrogen in silico.

Journal: Plant physiology

Authors' code: ilovaldivia/CCFN-CCS-RCA-LRBD (no license)

Status: code verified, 9 files readable

[35184] doi:10.1093/scan/nsad034 [paper, data]

Age-related differences in interference control in the context of a finger-lifting task: an fMRI study.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[35185] doi:10.1093/schbul/sbad002 [paper, data]

Genetic Insights of Schizophrenia via Single Cell RNA-Sequencing Analyses.

Journal: Schizophrenia bulletin

Status: data only, 1 dataset cited

[35186] doi:10.1109/tci.2023.3299212 [paper, repository]

A Theoretical Framework for Self-Supervised MR Image Reconstruction Using Sub-Sampling via Variable Density Noisier2Noise.

Journal: IEEE transactions on computational imaging

Authors' code: facebookresearch/fastMRI (no license), charlesmillard/Noisier2Noise_for_recon (GNU), byaman14/SSDU (no license)

Status: code verified, 40 files readable, 4 matches

[35187] doi:10.1117/1.jmi.10.4.044005 [paper, data]

Two-stage automated diagnosis framework for urogenital schistosomiasis in microscopy images from low-resource settings.

Journal: Journal of medical imaging (Bellingham, Wash.)

Status: data only, 1 dataset cited

[35188] doi:10.1117/1.nph.10.3.035010 [paper]

Developing customized NIRS-EEG for infant sleep research: methodological considerations.

Journal: Neurophotonics

Status: code on request

[35189] doi:10.1136/bmjpo-2023-001966 [paper, repository]

NeuroCNVscore: a tissue-specific framework to prioritise the pathogenicity of CNVs in neurodevelopmental disorders.

Journal: BMJ paediatrics open

Authors' code: lxsbch/neuroCNVscore (MIT), macarthur-lab/gene_lists (no license)

Status: code verified, 27 files readable, 3 matches

[35190] doi:10.1167/jov.23.7.1 [paper, repository]

Stimulation along the anterior-posterior axis of lateral frontal cortex reduces visual serial dependence.

Journal: Journal of vision

Authors' code: DobyRahnev/TBS-to-PFC (MIT)

Status: code verified, 44 files readable, 1 match

[35191] doi:10.1167/jov.23.7.18 [paper, repository]

Subtractive adaptation is a more effective and general mechanism in binocular rivalry than divisive adaptation.

Journal: Journal of vision

Authors' code: Zenodo 7542065 (other-open), mariainescravo/noise-adaptation-binocular-rivalry (no license)

Status: code verified, 18 files readable, 3 matches

[35192] doi:10.1523/eneuro.0046-23.2023 [paper, repository]

High-Sensitivity Intrinsic Optical Signal Imaging Through Flexible, Low-Cost Adaptations of an Upright Microscope.

Journal: eNeuro

Authors' code: zeigerlab/Intrinsic-Signal-Imaging (GPL-3.0)

Status: code verified, 4 files readable, 1 match

[35193] doi:10.1645/23-35 [paper, repository]

EXPERIMENTAL INFECTIONS WITH EUHAPLORCHIS CALIFORNIENSIS AND A SMALL CYATHOCOTYLID INCREASE CONSPICUOUS BEHAVIORS IN CALIFORNIA KILLIFISH (FUNDULUS PARVIPINNIS).

Journal: The Journal of parasitology

Authors' code: doi:10.5061/dryad.4mw6m90g2 (no license)

Status: code verified

[35194] doi:10.3344/kjp.23039 [paper, data]

Perampanel ameliorates nitroglycerin-induced migraine through inhibition of the cAMP/PKA/CREB signaling pathway in the trigeminal ganglion in rats.

Journal: The Korean journal of pain

Status: data only, 1 dataset cited

[35195] doi:10.3390/nu15133015 [paper, data]

Dietary and Non-Dietary Modulators of Cognitive Function.

Journal: Nutrients

Status: data only, 1 dataset cited

[35196] doi:10.3724/abbs.2023121 [paper, data]

SENP5 deteriorates traumatic brain injury via SUMO2-dependent suppression of E2F1 SUMOylation.

Journal: Acta biochimica et biophysica Sinica

Status: data only, 1 dataset cited

[35197] doi:10.4103/1673-5374.361516 [paper, data]

Oncogenic <i>BRAF</i>^V600E induces microglial proliferation through extracellular signal-regulated kinase and neuronal death through c-Jun N-terminal kinase.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

Friday, 30 June 2023 (38 papers)

[35198] doi:10.1007/s10071-023-01804-y [paper, data]

Inter-group alliance dynamics in Indo-Pacific bottlenose dolphins (Tursiops aduncus).

Journal: Animal cognition

Status: data only, 1 dataset cited

[35199] doi:10.1016/j.celrep.2023.112720 [paper, repository]

Laminar mechanisms of saccadic suppression in primate visual cortex.

Journal: Cell reports

Authors' code: Zenodo 7946057 (CC-BY-4.0)

Status: code verified, 18 files readable, 2 matches

[35200] doi:10.1021/acs.jctc.3c00289 [paper, repository]

Denoise Pretraining on Nonequilibrium Molecules for Accurate and Transferable Neural Potentials.

Journal: Journal of chemical theory and computation

Authors' code: yuyangw/Denoise-Pretrain-ML-Potential (MIT)

Status: code verified, 33 files readable, 9 matches

[35201] doi:10.1038/s41467-023-39589-w [paper, repository]

TRPA1 activation in non-sensory supporting cells contributes to regulation of cochlear sensitivity after acoustic trauma.

Journal: Nature communications

Authors' code: Zenodo 7896132 (CC-BY-4.0)

Status: code verified

[35202] doi:10.1038/s41467-023-39623-x [paper, repository]

Drug reinforcement impairs cognitive flexibility by inhibiting striatal cholinergic neurons.

Journal: Nature communications

Authors' code: Zenodo 7948766 (CC-BY-4.0)

Status: code verified, 34 files readable

[35203] doi:10.1038/s41598-023-35319-w [paper, repository]

Generalized neural closure models with interpretability.

Journal: Scientific reports

Authors' code: mit-mseas/generalized_nCMs (MIT)

Status: code verified, 54 files readable

[35204] doi:10.1038/s41598-023-37589-w [paper]

A neonicotinoid pesticide alters Drosophila olfactory processing.

Journal: Scientific reports

Status: code on request

[35205] doi:10.1038/s41598-023-37775-w [paper, data]

Developmental models of motor-evoked potential features by transcranial magnetic stimulation across age groups from childhood to adulthood.

Journal: Scientific reports

Status: data only, 3 datasets cited

[35206] doi:10.1117/1.nph.10.3.035004 [paper]

Comparing the segmentation of quantitative phase images of neurons using convolutional neural networks trained on simulated and augmented imagery.

Journal: Neurophotonics

Status: code on request

[35207] doi:10.1126/sciadv.adf6254 [paper, repository]

Integrating lipid metabolism, pheromone production and perception by Fruitless and Hepatocyte Nuclear Factor 4.

Journal: Science advances

Authors' code: Zenodo 7752914 (CC-BY-4.0)

Status: code verified

[35208] doi:10.1126/sciadv.adg1671 [paper, repository]

<i>Atoh1</i> drives the heterogeneity of the pontine nuclei neurons and promotes their differentiation.

Journal: Science advances

Authors' code: figshare 22490956 (CC-BY-4.0)

Status: code verified, 6 files readable, 6 matches

[35209] doi:10.1162/netn_a_00287 [paper, repository]

Bisected graph matching improves automated pairing of bilaterally homologous neurons from connectomes.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: microsoft/graspologic (MIT), navis-org/pymaid (GPL-3.0), neurodata/bilateral-connectome (other), neurodata/bgm (MIT), Zenodo 6561550 (other-open), Zenodo 5710143 (other-open)

Status: code verified, 427 files readable, 5 matches

[35210] doi:10.1162/netn_a_00288 [paper, repository]

Significant subgraph mining for neural network inference with multiple comparisons correction.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: pwollstadt/IDTxl (GPL-3.0)

Status: code verified, 165 files readable, 6 matches

[35211] doi:10.1162/netn_a_00289 [paper, data]

Dynamic rewiring of electrophysiological brain networks during learning.

Journal: Network neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[35212] doi:10.1162/netn_a_00290 [paper, repository]

From correlation to communication: Disentangling hidden factors from functional connectivity changes.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: DijunQuant/communication_public (MIT)

Status: code verified, 6 files readable, 7 matches

[35213] doi:10.1162/netn_a_00291 [paper, data]

Trade-offs among cost, integration, and segregation in the human connectome.

Journal: Network neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[35214] doi:10.1162/netn_a_00292 [paper, repository]

Larger lesion volume in people with multiple sclerosis is associated with increased transition energies between brain states and decreased entropy of brain activity.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: cerent/MS-NCT (no license)

Status: code verified, 4 files readable, 3 matches

[35215] doi:10.1162/netn_a_00293 [paper, data]

Age differences in functional brain networks associated with loneliness and empathy.

Journal: Network neuroscience (Cambridge, Mass.)

Status: data only, 2 datasets cited

[35216] doi:10.1162/netn_a_00298 [paper, repository]

Dynamic structure of motor cortical neuron coactivity carries behaviorally relevant information.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: hatsopoulos-lab/macaque-dynamic_functional_networks (no license)

Status: code verified, 17 files readable, 6 matches

[35217] doi:10.1162/netn_a_00301 [paper, repository]

Temporal Mapper: Transition networks in simulated and real neural dynamics.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: braindynamicslab/tmapper (BSD-3-Clause)

Status: code verified, 37 files readable, 11 matches

[35218] doi:10.1162/netn_a_00302 [paper, repository]

An information-theoretic analysis of resting-state versus task fMRI.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: picusacademicus/RSvsToM (no license)

Status: code verified, 4 files readable

[35219] doi:10.1162/netn_a_00304 [paper, repository]

Expanding connectomics to the laminar level: A perspective.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: ittais/Laminar_Connectivity (no license)

Status: code verified, 2 files readable, 2 matches

[35220] doi:10.1162/netn_a_00305 [paper, repository]

The role of epidemic spreading in seizure dynamics and epilepsy surgery.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: anapmillan/computer_model_for_epilepsy (GPL-3.0)

Status: code verified, 18 files readable, 4 matches

[35221] doi:10.1162/netn_a_00306 [paper, repository]

Characterizing heterogeneity in early adolescent reward networks and individualized associations with behavioral and clinical outcomes.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: OSF 7dgp4 (no license)

Status: code verified, 8 files readable, 4 matches

[35222] doi:10.1162/netn_a_00308 [paper, repository]

Parallel processing relies on a distributed, low-dimensional cortico-cerebellar architecture.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: macshine/coupling (no license)

Status: code verified, 4 files readable

[35223] doi:10.1162/netn_a_00309 [paper, repository]

Fast-local and slow-global neural ensembles in the mouse brain.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: thomasjdelaney/Regional_Correlations (no license), thomasjdelaney/Network_Noise_Rejection_Python (no license), odonnellgroup/fast-local-slow-global-ensembles (no license)

Status: code verified, 33 files readable, 3 matches

[35224] doi:10.1162/netn_a_00310 [paper, repository]

Parkinson's disease speech production network as determined by graph-theoretical network analysis.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: simonyanlab/NetworkAnalysis_Speech_HealthyAging (no license)

Status: code verified, 11 files readable, 6 matches

[35225] doi:10.1162/netn_a_00313 [paper, repository]

<i>NetPlotBrain</i>: A Python package for visualizing networks and brains.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: wiheto/netplotbrain (Apache-2.0), netplotbrain.org/gallery (no license), silviafan/netplotbrain-figures (no license)

Status: code verified, 89 files readable, 6 matches

[35226] doi:10.1186/s12859-023-05394-x [paper, repository]

Neuroimaging feature extraction using a neural network classifier for imaging genetics.

Journal: BMC bioinformatics

Authors' code: CedricBeaulac/Neuroimaging_genetics (no license)

Status: code verified, 5 files readable, 3 matches

[35227] doi:10.1242/dev.201484 [paper, data]

A chromatin remodelling SWI/SNF subunit, Snr1, regulates neural stem cell determination and differentiation.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[35228] doi:10.1371/journal.pbio.3002133 [paper, repository]

A guide to the BRAIN Initiative Cell Census Network data ecosystem.

Journal: PLoS biology

Authors' code: biccn.org (no license), obophenotype/brain_data_standards_ontologies (Apache-2.0)

Status: code verified, 38 files readable

[35229] doi:10.1371/journal.pone.0287900 [paper, repository]

Differential effects of intra-modal and cross-modal reward value on perception: ERP evidence.

Journal: PloS one

Authors' code: OSF 47wxr (no license)

Status: code verified, 13 files readable

[35230] doi:10.1590/0074-02760230033 [paper, data]

Perillyl alcohol modulates activation, permeability and integrity of human brain endothelial cells induced by Plasmodium falciparum.

Journal: Memorias do Instituto Oswaldo Cruz

Status: data only, 1 dataset cited

[35231] doi:10.25259/sni_209_2023 [paper, repository]

Understanding the molecular profiling of diffuse gliomas classification: A brief overview.

Journal: Surgical neurology international

Authors' code: cancer.gov/tcga (no license)

Status: code verified

[35232] doi:10.3390/biom13071063 [paper, data]

Quantitative Spatial Analysis of Neuroligin-3 mRNA Expression in the Enteric Nervous System Reveals a Potential Role in Neuronal-Glial Synapses and Reduced Expression in <i>Nlgn3^R451C</i> Mice.

Journal: Biomolecules

Status: data only, 2 datasets cited

[35233] doi:10.3390/brainsci13071011 [paper, data]

Event-Related Potentials in Assessing Visual Speech Cues in the Broader Autism Phenotype: Evidence from a Phonemic Restoration Paradigm.

Journal: Brain sciences

Status: data only, 1 dataset cited

[35234] doi:10.3390/genes14071382 [paper, data]

Synthetic Adrenocorticotropic Peptides Modulate the Expression Pattern of Immune Genes in Rat Brain following the Early Post-Stroke Period.

Journal: Genes

Status: data only, 1 dataset cited

[35235] doi:10.7554/elife.84604 [paper, repository]

A stable, distributed code for cue value in mouse cortex during reward learning.

Journal: eLife

Authors' code: Zenodo 6686927 (other-open), Zenodo 7718542 (other-open), steinmetzlab/ottenheimer-et-al-2022 (CC-BY-4.0)

Status: code verified, 24 files readable, 18 matches

Thursday, 29 June 2023 (36 papers)

[35236] doi:10.1016/j.bbih.2023.100664 [paper, repository]

C-Reactive protein and cognition: Mediation analyses with brain morphology in the UK Biobank.

Journal: Brain, behavior, & immunity - health

Authors' code: mendelsonD/immunoCognition-UKBioBank (no license), mendelsond/cognitivesubtypes (MIT)

Status: code verified, 11 files readable, 8 matches

[35237] doi:10.1016/j.biopsych.2023.06.022 [paper, repository]

The Genetic Architecture of Amygdala Nuclei.

Journal: Biological psychiatry

Authors' code: norment/open-science (no license), surfer.nmr.mgh.harvard.edu (no license), cog-genomics.org/plink (no license), bulik/ldsc (GPL-3.0), precimed/pleiofdr (GPL-3.0), precimed/mixer (GPL-3.0)

Status: code verified, 143 files readable

[35238] doi:10.1016/j.conb.2023.102747 [paper, data]

Mitochondrial regulation of local supply of energy in neurons.

Journal: Current opinion in neurobiology

Status: data only, 2 datasets cited

[35239] doi:10.1021/acsomega.3c01684 [paper, repository]

Array-Based Machine Learning for Functional Group Detection in Electron Ionization Mass Spectrometry.

Journal: ACS omega

Authors' code: Ohio-State-Allen-Lab/Mass_Spec_Functional_Group_ML (no license)

Status: code verified, 3 files readable, 1 match

[35240] doi:10.1037/dec0000219 [paper, data]

Discounting Future Reward in an Uncertain World.

Journal: Decision (Washington, D.C.)

Status: code on request, 1 dataset cited

[35241] doi:10.1038/s41398-023-02515-1 [paper]

Metabolism-related brain morphology accelerates aging and predicts neurodegenerative diseases and stroke: a UK Biobank study.

Journal: Translational psychiatry

Status: code on request

[35242] doi:10.1038/s41398-023-02525-z [paper]

Psychological resilience mediates the protective role of default-mode network functional connectivity against COVID-19 vicarious traumatization.

Journal: Translational psychiatry

Status: code on request

[35243] doi:10.1038/s41398-023-02531-1 [paper]

Classification and deep-learning-based prediction of Alzheimer disease subtypes by using genomic data.

Journal: Translational psychiatry

Status: code on request

[35244] doi:10.1038/s41419-023-05892-z [paper, data]

Super-enhancer-driven lncRNA LIMD1-AS1 activated by CDK7 promotes glioma progression.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[35245] doi:10.1038/s41467-023-39355-y [paper, repository]

Predictive neural representations of naturalistic dynamic input.

Journal: Nature communications

Authors' code: Ingmar-de-Vries/DynamicPredictions (MIT), OSF zk42f (no license), Zenodo 7941212 (other-open)

Status: code verified, 99 files readable, 33 matches

[35246] doi:10.1038/s41467-023-39542-x [paper, repository]

Learning in a sensory cortical microstimulation task is associated with elevated representational stability.

Journal: Nature communications

Authors' code: peronlab/2023_pancholi_natcomms (GPL-3.0)

Status: code verified, 20 files readable, 2 matches

[35247] doi:10.1038/s41467-023-39548-5 [paper, repository]

Learning-induced reorganization of number neurons and emergence of numerical representations in a biologically inspired neural network.

Journal: Nature communications

Authors' code: dicarlolab/CORnet (GPL-3.0), scsnl/Mistry_Strock_NatureComm_2023 (no license)

Status: code verified, 29 files readable, 2 matches

[35248] doi:10.1038/s41467-023-39609-9 [paper, repository]

The intersection of the retrieval state and internal attention.

Journal: Nature communications

Authors' code: OSF du56c (no license)

Status: empty repository

[35249] doi:10.1038/s41531-023-00550-9 [paper, data]

Genome-wide case-only analysis of gene-gene interactions with known Parkinson's disease risk variants reveals link between LRRK2 and SYT10.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[35250] doi:10.1038/s41562-023-01601-0 [paper, data]

Material category of visual objects computed from specular image structure.

Journal: Nature human behaviour

Status: data only, 1 dataset cited

[35251] doi:10.1038/s41588-023-01424-9 [paper, data]

Noncoding variants alter GATA2 expression in rhombomere 4 motor neurons and cause dominant hereditary congenital facial paresis.

Journal: Nature genetics

Status: data only, 3 datasets cited

[35252] doi:10.1038/s41598-023-37406-4 [paper, repository]

SpineTool is an open-source software for analysis of morphology of dendritic spines.

Journal: Scientific reports

Authors' code: spbstu-applied-math/SpineTool.Software (GPL-3.0), Zenodo 17359066 (GPL-3.0), biomed-imaging-lab/spinetool (GPL-3.0), Zenodo 17359067 (GPL-3.0)

Status: code verified, 26 files readable, 14 matches

[35253] doi:10.1038/s41598-023-37488-0 [paper, repository]

Screening autism-associated environmental factors in differentiating human neural progenitors with fractional factorial design-based transcriptomics.

Journal: Scientific reports

Authors' code: Tammimies-Lab/FFED-RNASeq (CC0-1.0)

Status: code verified, 24 files readable, 6 matches

[35254] doi:10.1038/s41598-023-37604-0 [paper, repository]

A refined information processing capacity metric allows an in-depth analysis of memory and nonlinearity trade-offs in neurocomputational systems.

Journal: Scientific reports

Authors' code: Zenodo 7688574 (CC-BY-4.0)

Status: code verified

[35255] doi:10.1038/s41598-023-37753-2 [paper, data]

Identification of hypoxia-related genes and exploration of their relationship with immune cells in ischemic stroke.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35256] doi:10.1038/s42003-023-04918-8 [paper, repository]

GABA decrease is associated with degraded neural specificity in the visual cortex of glaucoma patients.

Journal: Communications biology

Authors' code: OSF 85cds (no license)

Status: code verified, 1 file readable

[35257] doi:10.1038/s42003-023-05041-4 [paper, repository]

A human proteogenomic-cellular framework identifies KIF5A as a modulator of astrocyte process integrity with relevance to ALS.

Journal: Communications biology

Authors' code: ibarrioh/astrocyte_KIF5A (no license), Zenodo 7681344 (other-open)

Status: code verified, 8 files readable, 2 matches

[35258] doi:10.1111/eva.13574 [paper, repository]

Brain transcriptome of gobies inhabiting natural CO₂ seeps reveal acclimation strategies to long-term acidification.

Journal: Evolutionary applications

Authors' code: Adamtaranto/Corset-tools (GPL-3.0)

Status: code verified, 26 files readable, 3 matches

[35259] doi:10.1186/s40478-023-01574-1 [paper, data]

The neuropathological landscape of Hispanic and non-Hispanic White decedents with Alzheimer disease.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[35260] doi:10.1371/journal.pbio.3002158 [paper, repository]

The Brain/MINDS Marmoset Connectivity Resource: An open-access platform for cellular-level tracing and tractography in the primate brain.

Journal: PLoS biology

Authors' code: Zenodo 7906530 (Apache-2.0), Zenodo 7906607 (Apache-2.0), brainimageanalysis/bmcr (Apache-2.0), brainimageanalysis/flatmap_stack (Apache-2.0)

Status: code verified, 114 files readable, 9 matches

[35261] doi:10.1371/journal.pcbi.1011003 [paper, repository]

Laminar specificity of the auditory perceptual awareness negativity: A biophysical modeling study.

Journal: PLoS computational biology

Authors' code: OSF 9s3mq (no license)

Status: code verified, 1 file readable

[35262] doi:10.1371/journal.pcbi.1011119 [paper, repository]

Domestic cat nose functions as a highly efficient coiled parallel gas chromatograph.

Journal: PLoS computational biology

Authors' code: doi:10.5061/dryad.brv15dvdv (no license)

Status: code verified

[35263] doi:10.1371/journal.pone.0281385 [paper, data]

Similar connectivity of gut microbiota and brain activity networks is mediated by animal protein and lipid intake in children from a Mexican indigenous population.

Journal: PloS one

Status: data only, 1 dataset cited

[35264] doi:10.15252/embr.202256233 [paper, repository]

DOT1L activity affects neural stem cell division mode and reduces differentiation and ASNS expression.

Journal: EMBO reports

Authors' code: aertslab/SCENIC (GPL-3.0), Vogel-lab/DOT1L_activity_neocortex-paper (CC0-1.0)

Status: code verified, 55 files readable, 13 matches

[35265] doi:10.3389/fncel.2023.1196182 [paper, repository]

Glutamate spillover drives robust all-or-none dendritic plateau potentials-an <i>in silico</i> investigation using models of striatal projection neurons.

Journal: Frontiers in cellular neuroscience

Authors' code: danieltrpevski/spillover (GPL-3.0)

Status: code verified, 88 files readable, 2 matches

[35266] doi:10.3389/fncel.2023.1205261 [paper, data]

Ldlr-/-.Leiden mice develop neurodegeneration, age-dependent astrogliosis and obesity-induced changes in microglia immunophenotype which are partly reversed by complement component 5 neutralizing antibody.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[35267] doi:10.3389/fnins.2023.1219244 [paper, data]

Case report: <i>SLC6A1</i> mutations presenting with isolated absence seizures: description of 2 novel cases.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[35268] doi:10.3389/fnins.2023.1219753 [paper, repository]

Exploring the correlation between genetic transcription and multi-temporal developmental autism spectrum disorder using resting-state functional magnetic resonance imaging.

Journal: Frontiers in neuroscience

Authors' code: helab207/Alterations-in-Connectome-Dynamics-in-ASD-main (no license)

Status: code verified, 9 files readable, 2 matches

[35269] doi:10.3389/fnut.2023.1213223 [paper, data]

Diet and lifestyle impact the development and progression of Alzheimer's dementia.

Journal: Frontiers in nutrition

Status: data only, 3 datasets cited

[35270] doi:10.3390/e25070994 [paper, data]

Performance Baseline of Phase Transfer Entropy Methods for Detecting Animal Brain Area Interactions.

Journal: Entropy (Basel, Switzerland)

Status: data only, 1 dataset cited

[35271] doi:10.3390/jdb11030029 [paper, data]

The Tumor Suppressor <i>Adenomatous Polyposis Coli (apc)</i> Is Required for Neural Crest-Dependent Craniofacial Development in Zebrafish.

Journal: Journal of developmental biology

Status: data only, 1 dataset cited

Wednesday, 28 June 2023 (32 papers)

[35272] doi:10.1002/jcv2.12184 [paper, repository]

Can we diagnose mental disorders in children? A large-scale assessment of machine learning on structural neuroimaging of 6916 children in the adolescent brain cognitive development study.

Journal: JCPP advances

Authors' code: Zenodo 7968586 (MIT), ai-med/abcd_study (MIT)

Status: code verified, 68 files readable, 5 matches

[35273] doi:10.1007/s00429-023-02672-5 [paper, data]

The hierarchical organization of the precuneus captured by functional gradients.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[35274] doi:10.1007/s12975-023-01169-x [paper, data]

The Transcriptional Landscape of Pericytes in Acute Ischemic Stroke.

Journal: Translational stroke research

Status: data only, 1 dataset cited

[35275] doi:10.1016/j.celrep.2023.112706 [paper, repository]

Autism-linked UBE3A gain-of-function mutation causes interneuron and behavioral phenotypes when inherited maternally or paternally in mice.

Journal: Cell reports

Authors' code: Zenodo 8007301 (other-open), jeremymsimon/xing_ube3a (no license), COMBINE-lab/Salmon (BSD-3-Clause)

Status: code verified, 103 files readable, 3 matches

[35276] doi:10.1016/j.isci.2023.107223 [paper]

Intraoperative cortical localization of music and language reveals signatures of structural complexity in posterior temporal cortex.

Journal: iScience

Status: code on request

[35277] doi:10.1016/j.isci.2023.107230 [paper, repository]

Alcohol-sourced acetate impairs T cell function by promoting cortactin acetylation.

Journal: iScience

Authors' code: ZELLMECHANIK-DRESDEN/ShapeOut2 (GPL-3.0)

Status: code verified, 124 files readable

[35278] doi:10.1016/j.isci.2023.107233 [paper]

Effects of theta phase precessing optogenetic intervention on hippocampal neuronal reactivation and spatial maps.

Journal: iScience

Status: code on request

[35279] doi:10.1016/j.isci.2023.107247 [paper]

AAV-<i>GRN</i> partially corrects motor deficits and ALS/FTLD-related pathology in <i>Tmem106b</i>^<i>-/-</i><i>Grn</i>^<i>-/-</i> mice.

Journal: iScience

Status: code on request

[35280] doi:10.1016/j.nicl.2023.103465 [paper, repository]

Cortico-Cerebellar neurodynamics during social interaction in Autism Spectrum Disorders.

Journal: NeuroImage. Clinical

Authors' code: ppsp-team/sonetaa (no license)

Status: code verified, 43 files readable, 6 matches

[35281] doi:10.1038/s41586-023-06203-4 [paper, repository]

Wake-like skin patterning and neural activity during octopus sleep.

Journal: Nature

Authors' code: oist/pophale2023 (MIT)

Status: code verified, 130 files readable, 11 matches

[35282] doi:10.1038/s41598-023-37286-8 [paper, data]

Strengths of social ties modulate brain computations for third-party punishment.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35283] doi:10.1038/s41598-023-37351-2 [paper, data]

iMPI: portable human-sized magnetic particle imaging scanner for real-time endovascular interventions.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35284] doi:10.1093/braincomms/fcad190 [paper, repository]

The effect of sedation and time after cardiac arrest on coma outcome prognostication based on EEG power spectra.

Journal: Brain communications

Authors' code: DNC-EEG-platform/powerspectracoma (GPL-3.0)

Status: code verified, 9 files readable, 2 matches

[35285] doi:10.1098/rsob.230090 [paper, repository]

Pigment-dispersing factor is present in circadian clock neurons of pea aphids and may mediate photoperiodic signalling to insulin-producing cells.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.6697742 (no license)

Status: code found, still to be checked

[35286] doi:10.1098/rsos.221067 [paper, repository]

Capturing synchronization with complexity measure of ordinal pattern transition network constructed by crossplot.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6700130 (no license)

Status: code found, still to be checked

[35287] doi:10.1098/rspb.2023.0767 [paper, repository]

A model of cue integration as vector summation in the insect brain.

Journal: Proceedings. Biological sciences

Authors' code: refmitchell/cx_cue_integration_model (MIT), Zenodo 7788258 (other-open), doi:10.6084/m9.figshare.c.6688818 (no license)

Status: code verified, 70 files readable, 6 matches

[35288] doi:10.1101/2023.06.28.533479 [paper, repository]

SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis

Journal: bioRxiv (preprint)

Authors' code: Zenodo 7555467 (CC0-1.0), Zenodo 7552508 (CC0-1.0)

Status: code verified

[35289] doi:10.1126/sciadv.adg4671 [paper, repository]

NeuWS: Neural wavefront shaping for guidestar-free imaging through static and dynamic scattering media.

Journal: Science advances

Authors' code: Intelligent-Sensing/NeuWS (other), Zenodo 7897446 (bsd-3-clause-clear)

Status: code verified, 12 files readable

[35290] doi:10.1152/jn.00126.2023 [paper, repository]

Ocular following responses of the marmoset monkey are dependent on postsaccadic delay, spatiotemporal frequency, and saccade direction.

Journal: Journal of neurophysiology

Authors' code: Zenodo 8077848 (other-open), nprice-lab/ocufolmarmopaper (no license)

Status: code verified, 18 files readable, 2 matches

[35291] doi:10.1186/s12885-023-11057-0 [paper, data]

Integrated bioinformatics analysis and experimental validation reveal ISG20 as a novel prognostic indicator expressed on M2 macrophage in glioma.

Journal: BMC cancer

Status: data only, 1 dataset cited

[35292] doi:10.1186/s12974-023-02827-5 [paper, repository]

Chronic social defeat alters brain vascular-associated cell gene expression patterns leading to vascular dysfunction and immune system activation.

Journal: Journal of neuroinflammation

Authors' code: josh-samuels1200/Samuels-et-al_BVAC_scRNAseq_Analysis (no license)

Status: code verified, 7 files readable, 7 matches

[35293] doi:10.1242/jcs.260600 [paper, repository]

Direct fluorescent labeling of NF186 and NaV1.6 in living primary neurons using bioorthogonal click chemistry.

Journal: Journal of cell science

Authors' code: cleterrier/ChriSTORM (no license)

Status: code verified, 31 files readable

[35294] doi:10.1371/journal.pbio.3002148 [paper, repository]

A single-cell atlas of the sexually dimorphic Drosophila foreleg and its sensory organs during development.

Journal: PLoS biology

Authors' code: OSF ba8tf (no license)

Status: code verified, 6 files readable, 22 matches

[35295] doi:10.1371/journal.pone.0287049 [paper, data]

Development and validation of a natural dynamic facial expression stimulus set.

Journal: PloS one

Status: data only, 1 dataset cited

[35296] doi:10.1523/eneuro.0473-22.2023 [paper, data]

β Band Rhythms Influence Reaction Times.

Journal: eNeuro

Status: data only, 1 dataset cited

[35297] doi:10.18632/aging.204804 [paper]

Integrative analysis of single-cell and bulk RNA sequencing unveils the senescence landscape in ischemic stroke.

Journal: Aging

Status: data only

[35298] doi:10.3389/fncom.2023.1084080 [paper, repository]

Controlling neocortical epileptic seizures using forced temporal spike-time stimulation: an <i>in silico</i> computational study.

Journal: Frontiers in computational neuroscience

Authors' code: jschmalz/ftsts-control-epilepsy (no license)

Status: code verified, 9 files readable, 1 match

[35299] doi:10.3389/fnhum.2023.1087026 [paper, data]

Cytoarchitectonic mapping of the human frontal operculum-New correlates for a variety of brain functions.

Journal: Frontiers in human neuroscience

Status: data only, 13 datasets cited

[35300] doi:10.3389/fped.2023.1177470 [paper, repository]

Interoperable and explainable machine learning models to predict morbidity and mortality in acute neurological injury in the pediatric intensive care unit: secondary analysis of the TOPICC study.

Journal: Frontiers in pediatrics

Authors' code: nkmunjal/PICUNeuroPrediction (GPL-3.0)

Status: code verified, 9 files readable, 5 matches

[35301] doi:10.3390/brainsci13071003 [paper]

Eleven Crucial Pesticides Appear to Regulate Key Genes That Link MPTP Mechanism to Cause Parkinson's Disease through the Selective Degeneration of Dopamine Neurons.

Journal: Brain sciences

Status: data only

[35302] doi:10.3390/ijms241310769 [paper]

Comparative Study of Terminal Cortical Potentials Using Iridium and Ag/AgCl Electrodes.

Journal: International journal of molecular sciences

Status: code on request

[35303] doi:10.3390/ijms241310796 [paper, data]

The Prognostic Biomarkers of Plasma Trimethylamine N-Oxide and Short-Chain Fatty Acids for Recanalization Therapy in Acute Ischemic Stroke.

Journal: International journal of molecular sciences

Status: data only, 5 datasets cited

Tuesday, 27 June 2023 (31 papers)

[35304] doi:10.1002/hbm.26406 [paper]

Differential effects of expectancy on memory formation in young and older adults.

Journal: Human brain mapping

Status: code on request

[35305] doi:10.1002/hbm.26411 [paper]

The role of ventrolateral prefrontal cortex on voluntary emotion regulation of social pain.

Journal: Human brain mapping

Status: code on request

[35306] doi:10.1002/mco2.305 [paper]

The reconfiguration pattern of individual brain metabolic connectome for Parkinson's disease identification.

Journal: MedComm

Status: code on request

[35307] doi:10.1007/s00415-023-11831-x [paper, data]

A typology of cerebral small vessel disease based on imaging markers.

Journal: Journal of neurology

Status: data only, 1 dataset cited

[35308] doi:10.1016/j.cub.2023.05.065 [paper, data]

Claustral neurons projecting to frontal cortex restrict opioid consumption.

Journal: Current biology : CB

Status: code on request, 1 dataset cited

[35309] doi:10.1016/j.isci.2023.107217 [paper]

Proteomics identifies lipocalin-2 in neonatal inflammation associated with cerebrovascular alteration in mice and preterm infants.

Journal: iScience

Status: code on request

[35310] doi:10.1016/j.neuroimage.2023.120211 [paper, repository]

High-dimensional multivariate autoregressive model estimation of human electrophysiological data using fMRI priors.

Journal: NeuroImage

Authors' code: Zenodo 7851198 (BSD-3-Clause)

Status: code verified, 83 files readable, 6 matches

[35311] doi:10.1016/j.ohx.2023.e00446 [paper, data]

Arduino based intra-cerebral microinjector device for neuroscience research.

Journal: HardwareX

Status: data only, 1 dataset cited

[35312] doi:10.1038/s41386-023-01614-3 [paper, data]

Therapeutic potential of N-methyl-D-aspartate receptor modulators in psychiatry.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[35313] doi:10.1038/s41467-023-38695-z [paper, repository]

Cortical glutamate and GABA are related to compulsive behaviour in individuals with obsessive compulsive disorder and healthy controls.

Journal: Nature communications

Authors' code: carbocation/falsediscovery (no license)

Status: code verified, 6 files readable, 1 match

[35314] doi:10.1038/s41597-023-02325-6 [paper, repository]

A large-scale fMRI dataset for human action recognition.

Journal: Scientific data

Authors' code: BNUCNL/HAD-fmri (MIT), edickie/ciftify (MIT)

Status: code verified, 81 files readable, 9 matches

[35315] doi:10.1038/s41598-023-37304-9 [paper]

Balance-energy of resting state network in obsessive-compulsive disorder.

Journal: Scientific reports

Status: code on request

[35316] doi:10.1038/s41598-023-37541-y [paper, repository]

Modeling of mitochondrial genetic polymorphisms reveals induction of heteroplasmy by pleiotropic disease locus 10398A>G.

Journal: Scientific reports

Authors' code: gatk-workflows/gatk4-mitochondria-pipeline (BSD-3-Clause)

Status: empty repository, 2 files readable

[35317] doi:10.1038/s42003-023-05014-7 [paper, repository]

Functionally analogous body- and animacy-responsive areas are present in the dog (Canis familiaris) and human occipito-temporal lobe.

Journal: Communications biology

Authors' code: OSF kzcs2 (no license), magdalenaboch/fROI-analysis (no license), Zenodo 7967088 (other-open)

Status: code verified, 9 files readable

[35318] doi:10.1093/pnasnexus/pgad188 [paper, data]

Prediction in cultured cortical neural networks.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[35319] doi:10.1186/s12950-023-00349-8 [paper, data]

Stem cell-derived brainstem mouse astrocytes obtain a neurotoxic phenotype in vitro upon neuroinflammation.

Journal: Journal of inflammation (London, England)

Status: data only, 1 dataset cited

[35320] doi:10.1186/s12984-023-01205-9 [paper, repository]

Assisting walking balance using a bio-inspired exoskeleton controller.

Journal: Journal of neuroengineering and rehabilitation

Authors' code: MaartenAfschrift/GeyerAnkle_ParamEstimation (no license), MaartenAfschrift/GeyerAnkle_Simulink (no license), MaartenAfschrift/NMC_Ankle_PostProcessing (no license), OSF ekrqj (no license)

Status: code verified, 90 files readable, 15 matches

[35321] doi:10.1242/bio.059995 [paper, repository]

Ac/Ds transposition for CRISPR/dCas9-SID4x epigenome modulation in zebrafish.

Journal: Biology open

Authors' code: vchongmorrison.github.io/zfcrispri (no license), vchongmorrison.github.io (no license)

Status: code verified

[35322] doi:10.1242/dmm.049995 [paper, data]

A zebrafish model of combined saposin deficiency identifies acid sphingomyelinase as a potential therapeutic target.

Journal: Disease models & mechanisms

Status: data only, 3 datasets cited

[35323] doi:10.1371/journal.pbio.3002160 [paper, repository]

Preservation of developmental spontaneous activity enables early auditory system maturation in deaf mice.

Journal: PLoS biology

Authors' code: Zenodo 7896212 (other-open), ckersbe1/gjb2-development-ms (no license)

Status: code verified, 308 files readable, 8 matches

[35324] doi:10.1371/journal.pone.0274713 [paper, data]

A comparative study of the cortical function during the interpretation of algorithms in pseudocode and the solution of first-order algebraic equations.

Journal: PloS one

Status: data only, 1 dataset cited

[35325] doi:10.1371/journal.pone.0287708 [paper, repository]

Generalization of generative model for neuronal ensemble inference method.

Journal: PloS one

Authors' code: supp:PMC10298798/pone.0287708.s016.cpp (no license)

Status: code verified, 1 file readable, 2 matches

[35326] doi:10.1523/eneuro.0019-23.2023 [paper, repository]

Hyperconnectivity of Two Separate Long-Range Cholinergic Systems Contributes to the Reorganization of the Brain Functional Connectivity during Nicotine Withdrawal in Male Mice.

Journal: eNeuro

Authors' code: George-LabX (no license), alexkwanlab.org/data (no license)

Status: code verified

[35327] doi:10.1523/jneurosci.0286-23.2023 [paper, data]

EEG Decoding Reveals Neural Predictions for Naturalistic Material Behaviors.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 2 datasets cited

[35328] doi:10.3389/fnhum.2023.1129362 [paper, repository]

An open-source human-in-the-loop BCI research framework: method and design.

Journal: Frontiers in human neuroscience

Authors' code: bci.lu.se/bci-hil (no license), bci-hil/bci-hil (MIT), gumpy-bci/gumpy (MIT)

Status: code verified, 53 files readable, 8 matches

[35329] doi:10.3389/fninf.2023.1099510 [paper, repository]

A scalable implementation of the recursive least-squares algorithm for training spiking neural networks.

Journal: Frontiers in neuroinformatics

Authors' code: INM-6/NetworkUnit (BSD-3-Clause), SpikingNetwork/TrainSpikingNet.jl (BSD-3-Clause), JaneliaSciComp/BatchedBLAS.jl (BSD-3-Clause), JaneliaSciComp/SymmetricFormats.jl (BSD-3-Clause)

Status: code verified, 111 files readable

[35330] doi:10.3390/cancers15133369 [paper, data]

AI-Based Glioma Grading for a Trustworthy Diagnosis: An Analytical Pipeline for Improved Reliability.

Journal: Cancers

Status: data only, 1 dataset cited

[35331] doi:10.3390/genes14071353 [paper, data]

Deletion of a Single Lysine Residue at Position 292 of CAMK2A Disrupts Protein Function, Causing Severe Epileptic Encephalopathy and Intellectual Disability.

Journal: Genes

Status: data only, 1 dataset cited

[35332] doi:10.3390/ijms241310725 [paper, data]

Succinyl-CoA Synthetase Dysfunction as a Mechanism of Mitochondrial Encephalomyopathy: More than Just an Oxidative Energy Deficit.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

[35333] doi:10.7554/elife.84822 [paper, repository]

Pupil size reflects activation of subcortical ascending arousal system nuclei during rest.

Journal: eLife

Authors' code: OSF 5rjcf (no license), bethlloyd/lloyd_etal_rsbold_pupil (no license)

Status: code verified, 67 files readable, 7 matches

[35334] doi:10.7554/elife.86176 [paper, data]

How honey bees make fast and accurate decisions.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 26 June 2023 (27 papers)

[35335] doi:10.1007/s12021-023-09632-8 [paper, repository]

Localization and Registration of 2D Histological Mouse Brain Images in 3D Atlas Space.

Journal: Neuroinformatics

Authors' code: mrymsadeghi/AMBIA (MIT), neurodata/ardent (Apache-2.0)

Status: code verified, 69 files readable, 10 matches

[35336] doi:10.1016/j.celrep.2023.112699 [paper, repository]

T-type Ca²⁺ and persistent Na⁺ currents synergistically elevate ventral, not dorsal, entorhinal cortical stellate cell excitability.

Journal: Cell reports

Authors' code: modeldb:112546 (no license)

Status: code found, still to be checked

[35337] doi:10.1016/j.nicl.2023.103458 [paper, repository]

Preliminary validation of a structural magnetic resonance imaging metric for tracking dementia-related neurodegeneration and future decline.

Journal: NeuroImage. Clinical

Authors' code: jbramen/AD-NeuroScore (no license)

Status: code verified, 2 files readable, 2 matches

[35338] doi:10.1038/s41380-023-02129-5 [paper, data]

Adnp-mutant mice with cognitive inflexibility, CaMKIIα hyperactivity, and synaptic plasticity deficits.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[35339] doi:10.1038/s41467-023-39060-w [paper, repository]

Border-associated macrophages mediate the neuroinflammatory response in an alpha-synuclein model of Parkinson disease.

Journal: Nature communications

Authors' code: Zenodo 7693103 (CC-BY-4.0)

Status: code verified

[35340] doi:10.1038/s41467-023-39497-z [paper, repository]

Striatal cholinergic interneuron membrane voltage tracks locomotor rhythms in mice.

Journal: Nature communications

Authors' code: HanLabBU/Shroff-Lowet-Nature-Communication-2023 (MIT), Zenodo 7805663 (other-open)

Status: code verified, 45 files readable, 4 matches

[35341] doi:10.1038/s41591-023-02408-2 [paper, repository]

Phenotypic effects of genetic variants associated with autism.

Journal: Nature medicine

Authors' code: MRCIEU/PHESANT (MIT), thomas-rolland/subdiagnostic-autism-variants (GPL-3.0)

Status: code verified, 63 files readable, 6 matches

[35342] doi:10.1038/s41593-023-01361-0 [paper, repository]

Multi-level analysis of the gut-brain axis shows autism spectrum disorder-associated molecular and microbial profiles.

Journal: Nature neuroscience

Authors' code: mortonjt/asd_multiomics_analyses (no license), Zenodo 7877350 (other-open), flatironinstitute/q2-matchmaker (BSD-3-Clause), mortonjt/q2-differential (BSD-3-Clause)

Status: code verified, 137 files readable, 11 matches

[35343] doi:10.1038/s41598-023-36866-y [paper, data]

Creation of a milk oligosaccharide database, MilkOligoDB, reveals common structural motifs and extensive diversity across mammals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35344] doi:10.1038/s41598-023-37219-5 [paper, data]

Neural complexity through a nonextensive statistical-mechanical approach of human electroencephalograms.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35345] doi:10.1073/pnas.2302534120 [paper, data]

Antisense oligonucleotide rescue of CGG expansion-dependent &lt;i&gt;FMR1&lt;/i&gt; mis-splicing in fragile X syndrome restores FMRP.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[35346] doi:10.1093/braincomms/fcad185 [paper, data]

Does it matter what is trained? A randomized controlled trial evaluating the specificity of alpha/delta ratio neurofeedback in reducing tinnitus symptoms.

Journal: Brain communications

Status: data only, 1 dataset cited

[35347] doi:10.1128/msystems.00415-23 [paper, data]

Sodium butyrate facilitates CRHR2 expression to alleviate HPA axis hyperactivity in autism-like rats induced by prenatal lipopolysaccharides through histone deacetylase inhibition.

Journal: mSystems

Status: data only, 1 dataset cited

[35348] doi:10.1177/10731911231182693 [paper, repository]

Measuring Intolerance of Uncertainty After Acquired Brain Injury: Factor Structure, Reliability, and Validity of the Intolerance of Uncertainty Scale-12.

Journal: Assessment

Authors' code: OSF 6c89x (no license), OSF gmabq (no license), OSF eqbhy (no license)

Status: code verified, 2 files readable, 4 matches

[35349] doi:10.1186/s12974-023-02831-9 [paper, data]

Ambient RNAs removal of cortex-specific snRNA-seq reveals Apoe⁺ microglia/macrophage after deeper cerebral hypoperfusion in mice.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[35350] doi:10.1186/s12974-023-02837-3 [paper, data]

Identification of TIMP1 as an inflammatory biomarker associated with temporal lobe epilepsy based on integrated bioinformatics and experimental analyses.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[35351] doi:10.1242/dmm.049854 [paper, data]

NR2F1 shapes mitochondria in the mouse brain, providing new insights into Bosch-Boonstra-Schaaf optic atrophy syndrome.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[35352] doi:10.12688/f1000research.133220.2 [paper, repository]

The identification of high-performing antibodies for RNA-binding protein FUS for use in Western Blot, immunoprecipitation, and immunofluorescence.

Journal: F1000Research

Authors' code: Zenodo 5259944 (CC-BY-4.0)

Status: empty repository

[35353] doi:10.1371/journal.pgen.1010435 [paper, data]

A STIM dependent dopamine-neuropeptide axis maintains the larval drive to feed and grow in Drosophila.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[35354] doi:10.1523/eneuro.0088-23.2023 [paper, repository]

Interoceptive Awareness of the Breath Preserves Attention and Language Networks amidst Widespread Cortical Deactivation: A Within-Participant Neuroimaging Study.

Journal: eNeuro

Authors' code: OSF k6uen (no license), OSF ctqrh (no license)

Status: code verified, 25 files readable, 9 matches

[35355] doi:10.3389/fimmu.2023.1164742 [paper, data]

Identification of cell death-related biomarkers and immune infiltration in ischemic stroke between male and female patients.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[35356] doi:10.3389/fnagi.2023.1169620 [paper]

Identification of diagnostic biomarkers in Alzheimer's disease by integrated bioinformatic analysis and machine learning strategies.

Journal: Frontiers in aging neuroscience

Status: data only

[35357] doi:10.3389/fphar.2023.1033859 [paper, data]

Cuproptosis-related genes signature and validation of differential expression and the potential targeting drugs in temporal lobe epilepsy.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[35358] doi:10.3390/life13071449 [paper, data]

Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[35359] doi:10.7150/thno.81407 [paper, repository]

Single-cell RNA sequencing identifies critical transcription factors of tumor cell invasion induced by hypoxia microenvironment in glioblastoma.

Journal: Theranostics

Authors' code: yihan1221/CHPF (no license)

Status: code verified, 5 files readable, 4 matches

[35360] doi:10.7150/thno.81999 [paper, data]

SDC1-TGM2-FLOT1-BHMT complex determines radiosensitivity of glioblastoma by influencing the fusion of autophagosomes with lysosomes.

Journal: Theranostics

Status: data only, 1 dataset cited

[35361] doi:10.7554/elife.84630 [paper, repository]

Cortico-thalamo-cortical interactions modulate electrically evoked EEG responses in mice.

Journal: eLife

Authors' code: renzocom/PCIst (GPL-3.0)

Status: code verified, 7 files readable, 2 matches

Sunday, 25 June 2023 (6 papers)

[35362] doi:10.1016/j.bbi.2023.06.019 [paper, data]

Psychological stress is associated with arterial inflammation in people living with treated HIV infection.

Journal: Brain, behavior, and immunity

Status: data only, 1 dataset cited

[35363] doi:10.1016/j.isci.2023.107204 [paper, repository]

Motor variability modulates calibration of precisely timed movements.

Journal: iScience

Authors' code: OSF nx5g6 (no license)

Status: code verified, 3 files readable

[35364] doi:10.1016/j.isci.2023.107207 [paper, data]

Cannabinoid receptor type 1 (CB₁R) inhibits hypothalamic leptin signaling via β-arrestin1 in complex with TC-PTP and STAT3.

Journal: iScience

Status: code on request, 1 dataset cited

[35365] doi:10.1016/j.neuroimage.2023.120234 [paper]

Mechanical stiffness and anisotropy measured by MRE during brain development in the minipig.

Journal: NeuroImage

Status: code on request

[35366] doi:10.3390/brainsci13070995 [paper, repository]

Amortization Transformer for Brain Effective Connectivity Estimation from fMRI Data.

Journal: Brain sciences

Authors' code: cabal-cmu/feedback-discovery (no license)

Status: code verified, 31 files readable

[35367] doi:10.3390/diagnostics13132163 [paper, repository]

Deep Learning and Artificial Intelligence Applied to Model Speech and Language in Parkinson's Disease.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: PauPerezT/WEBERT (no license)

Status: code verified, 24 files readable

Saturday, 24 June 2023 (8 papers)

[35368] doi:10.1007/s00401-023-02604-x [paper, data]

Cell-specific MAPT gene expression is preserved in neuronal and glial tau cytopathologies in progressive supranuclear palsy.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[35369] doi:10.1016/j.jksuci.2023.101618 [paper, repository]

CsAGP: Detecting Alzheimer's disease from multimodal images via dual-transformer with cross-attention and graph pooling.

Journal: Journal of King Saud University. Computer and information sciences

Authors' code: weimingyang4/CsAGP (no license)

Status: code verified, 1 file readable

[35370] doi:10.1016/j.neuroimage.2023.120238 [paper, data]

Effects of phase encoding direction on test-retest reliability of human functional connectome.

Journal: NeuroImage

Status: code on request, 1 dataset cited

[35371] doi:10.1038/s41398-023-02502-6 [paper, repository]

Generalizable prediction of childhood ADHD symptoms from neurocognitive testing and youth characteristics.

Journal: Translational psychiatry

Authors' code: OSF zf82n (no license)

Status: code verified, 5 files readable, 5 matches

[35372] doi:10.1038/s41398-023-02521-3 [paper, data]

Transcriptional changes in specific subsets of Drosophila neurons following inhibition of the serotonin transporter.

Journal: Translational psychiatry

Status: code on request, 1 dataset cited

[35373] doi:10.1038/s41467-023-39420-6 [paper, repository]

Schizophrenia-associated NRXN1 deletions induce developmental-timing- and cell-type-specific vulnerabilities in human brain organoids.

Journal: Nature communications

Authors' code: KANG-BIOINFO/NRXN1_effects (MIT), beccasbastian/CalciumIMG_Analysis (no license)

Status: code verified, 67 files readable, 18 matches

[35374] doi:10.1038/s41598-023-37535-w [paper]

Transcriptomic analysis reveals distinct adaptive molecular mechanism in the hippocampal CA3 from rats susceptible or not-susceptible to hyperthermia-induced seizures.

Journal: Scientific reports

Status: data only

[35375] doi:10.3390/s23135866 [paper, data]

Spatial Smoothing Effect on Group-Level Functional Connectivity during Resting and Task-Based fMRI.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 23 June 2023 (34 papers, 17 on this page)

[35376] doi:10.1007/s00125-023-05935-2 [paper, data]

Disruption of cortical cell type composition and function underlies diabetes-associated cognitive decline.

Journal: Diabetologia

Status: data only, 1 dataset cited

[35377] doi:10.1016/j.celrep.2023.112679 [paper]

PTK7 is a positive allosteric modulator of GPR133 signaling in glioblastoma.

Journal: Cell reports

Status: code on request

[35378] doi:10.1016/j.dib.2023.109336 [paper, data]

Whole proteome copy number dataset in primary mouse cortical neurons.

Journal: Data in brief

Status: data only, 1 dataset cited

[35379] doi:10.1016/j.ebiom.2023.104679 [paper, data]

Elevated C-reactive protein mediates the liver-brain axis: a preliminary study.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[35380] doi:10.1016/j.neurobiolaging.2023.06.012 [paper, repository]

Lower socioeconomic status is associated with premature brain aging.

Journal: Neurobiology of aging

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable

[35381] doi:10.1016/j.ynirp.2023.100180 [paper, data]

Introducing the English EmpaToM task: A tool to assess empathy, compassion, and theory of mind in fMRI studies.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

[35382] doi:10.1038/s41380-023-02121-z [paper, repository]

Alprazolam modulates persistence energy during emotion processing in first-degree relatives of individuals with schizophrenia: a network control study.

Journal: Molecular psychiatry

Authors' code: arunsm/alpraz-project (no license), Zenodo 3672110 (other-open), dalejn/cleanbib (MIT)

Status: code verified, 67 files readable, 12 matches

[35383] doi:10.1038/s41598-023-36812-y [paper, data]

Longitudinal investigation of changes in resting-state co-activation patterns and their predictive ability in the zQ175 DN mouse model of Huntington's disease.

Journal: Scientific reports

Status: data only, 2 datasets cited

[35384] doi:10.1038/s41598-023-37046-8 [paper, data]

Tau protein binds to the P53 E3 ubiquitin ligase MDM2.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35385] doi:10.1038/s41598-023-37102-3 [paper]

Using macular velocity measurements to relate parameters of bone conduction to vestibular compound action potential responses.

Journal: Scientific reports

Status: code on request

[35386] doi:10.1038/s41598-023-37173-2 [paper, repository]

Induced alpha and beta electroencephalographic rhythms covary with single-trial speech intelligibility in competition.

Journal: Scientific reports

Authors' code: vibhaviswana/inducedOscillationsAndSpeechIntelligibility (no license), SNAPsoftware/ANLffr (BSD-3-Clause)

Status: code verified, 21 files readable, 8 matches

[35387] doi:10.1038/s42003-023-05027-2 [paper, data]

Cellular senescence in white matter microglia is induced during ageing in mice and exacerbates the neuroinflammatory phenotype.

Journal: Communications biology

Status: data only, 1 dataset cited

[35388] doi:10.1038/s42003-023-05042-3 [paper, repository]

Cortical recurrence supports resilience to sensory variance in the primary visual cortex.

Journal: Communications biology

Authors' code: Zenodo 8016705 (other-open), hugoladret/variance-processing-v1 (no license)

Status: code verified, 66 files readable, 9 matches

[35389] doi:10.1111/psyp.14362 [paper, repository]

Neural speech tracking shifts from the syllabic to the modulation rate of speech as intelligibility decreases.

Journal: Psychophysiology

Authors' code: schmidtfa (no license)

Status: code verified

[35390] doi:10.1117/1.nph.10.3.035003 [paper, repository]

DDeep3M+: adaptive enhancement powered weakly supervised learning for neuron segmentation.

Journal: Neurophotonics

Authors' code: xiaoronghust/DDeep3Mplus (no license)

Status: code verified, 12 files readable

[35391] doi:10.1136/bmjopen-2022-069258 [paper, data]

Cohort profile: rationale and methods of UK Biobank repeat imaging study eye measures to study dementia.

Journal: BMJ open

Status: data only, 4 datasets cited

[35392] doi:10.1177/23969873231183206 [paper, repository]

Prediction of response to thrombolysis in acute stroke using neural network analysis of CT perfusion imaging.

Journal: European stroke journal

Authors' code: Yutong441/deepCTP (no license)

Status: code verified, 45 files readable, 7 matches

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