Every paper, by date: page 159

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 159 of 200: 23 June 2023 to 14 June 2023.

Friday, 23 June 2023 (34 papers, 17 on this page)

[35393] doi:10.1186/s12888-023-04905-7 [paper, repository]

Shared genetic architecture between mental health and the brain functional connectome in the UK Biobank.

Journal: BMC psychiatry

Authors' code: norment/open-science (no license)

Status: code verified, 61 files readable

[35394] doi:10.1186/s12987-023-00451-2 [paper, repository]

Nocturnal increase in cerebrospinal fluid secretion as a circadian regulator of intracranial pressure.

Journal: Fluids and barriers of the CNS

Authors' code: Sorennorge/MacAulayLab_Nocturnal_rythem_RNAseq (no license)

Status: code verified, 7 files readable

[35395] doi:10.1186/s40164-023-00412-3 [paper, data]

Outcome differences between PD-1/PD-L1 inhibitors-based monotherapy and combination treatments in NSCLC with brain metastases.

Journal: Experimental hematology & oncology

Status: data only, 6 datasets cited

[35396] doi:10.1371/journal.pntd.0011249 [paper, data]

The FMRF-NH2 gated sodium channel of Biomphalaria glabrata: Localization and expression following infection by Schistosoma mansoni.

Journal: PLoS neglected tropical diseases

Status: data only, 1 dataset cited

[35397] doi:10.1371/journal.pone.0282549 [paper, repository]

Differentiation of white matter histopathology using b-tensor encoding and machine learning.

Journal: PloS one

Authors' code: RicardoRios46/QTI_ML_WM_paper (GPL-3.0)

Status: code verified, 7 files readable, 2 matches

[35398] doi:10.1371/journal.pone.0287584 [paper, data]

Effect of speech-stimulus degradation on phoneme-related potential.

Journal: PloS one

Status: data only, 1 dataset cited

[35399] doi:10.3389/fnhum.2023.1124065 [paper, repository]

Overt speech decoding from cortical activity: a comparison of different linear methods.

Journal: Frontiers in human neuroscience

Authors' code: Zenodo 4437131 (GPL-2.0)

Status: code verified

[35400] doi:10.3389/fnins.2023.1176551 [paper, repository]

A two-branch trade-off neural network for balanced scoring sleep stages on multiple cohorts.

Journal: Frontiers in neuroscience

Authors' code: neergaard/deep-sleep-pytorch (MIT)

Status: code verified, 31 files readable, 4 matches

[35401] doi:10.3389/fnmol.2023.1114857 [paper, data]

The identification of protein and RNA interactors of the splicing factor Caper in the adult <i>Drosophila</i> nervous system.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[35402] doi:10.3389/fnmol.2023.1179209 [paper, data]

Confronting the loss of trophic support.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[35403] doi:10.3389/fpsyg.2023.1193822 [paper, repository]

ERP evidence for Slavic and German word stress cue sensitivity in English.

Journal: Frontiers in psychology

Authors' code: OSF sb6pv (no license)

Status: code verified, 3 files readable, 3 matches

[35404] doi:10.3390/cells12131697 [paper, repository]

A Shared Pathogenic Mechanism for Valproic Acid and <i>SHROOM3</i> Knockout in a Brain Organoid Model of Neural Tube Defects.

Journal: Cells

Authors' code: huangjoy1/sosr-analysis-files (no license)

Status: code verified, 3 files readable

[35405] doi:10.3390/microorganisms11071643 [paper]

Electrophysiological and Behavioral Responses of Virgin Female <i>Bactrocera tryoni</i> to Microbial Volatiles from Enterobacteriaceae.

Journal: Microorganisms

Status: code on request

[35406] doi:10.3390/s23135836 [paper, repository]

Paving the Way for Motor Imagery-Based Tele-Rehabilitation through a Fully Wearable BCI System.

Journal: Sensors (Basel, Switzerland)

Authors' code: anthonyesp/neurofeedback (no license)

Status: code verified, 4 files readable

[35407] doi:10.3390/v15071419 [paper, data]

Kunjin Virus, Zika Virus, and Yellow Fever Virus Infections Have Distinct Effects on the Coding Transcriptome and Proteome of Brain-Derived U87 Cells.

Journal: Viruses

Status: data only, 2 datasets cited

[35408] doi:10.3758/s13415-023-01112-5 [paper, data]

Motivated attention and task relevance in the processing of cross-modally associated faces: Behavioral and electrophysiological evidence.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request, 2 datasets cited

[35409] doi:10.7554/elife.84324 [paper, repository]

Targeted memory reactivation in human REM sleep elicits detectable reactivation.

Journal: eLife

Authors' code: MahmoudAbdellahi/Lively_Vectors (MIT), treder/MVPA-Light (MIT)

Status: code verified, 318 files readable, 3 matches

Thursday, 22 June 2023 (31 papers)

[35410] doi:10.1002/acm2.14072 [paper, data]

Patient-specific geometrical distortion corrections of MRI images improve dosimetric planning accuracy of vestibular schwannoma treated with gamma knife stereotactic radiosurgery.

Journal: Journal of applied clinical medical physics

Status: data only, 2 datasets cited

[35411] doi:10.1002/hbm.26402 [paper, repository]

Striatonigrostriatal connectivity-based cross-species parcellation of human and macaque substantia nigra.

Journal: Human brain mapping

Authors' code: xlxia/hm-sn-parc (no license)

Status: code verified, 4 files readable, 1 match

[35412] doi:10.1007/s00401-023-02597-7 [paper, repository]

Transcriptomic profiling of Parkinson's disease brains reveals disease stage specific gene expression changes.

Journal: Acta neuropathologica

Authors' code: chiaracapp/Transcriptomic-profiling-of-PD-brains (no license)

Status: code verified, 11 files readable, 15 matches

[35413] doi:10.1016/j.eclinm.2023.102050 [paper]

Radiograph-comparable image synthesis for spine alignment analysis using deep learning with prospective clinical validation.

Journal: EClinicalMedicine

Status: code on request

[35414] doi:10.1016/j.neuroimage.2023.120236 [paper, repository]

Multi-modal and multi-model interrogation of large-scale functional brain networks.

Journal: NeuroImage

Authors' code: francpsantos/whole_brain_generative_models (no license)

Status: code verified, 6 files readable, 14 matches

[35415] doi:10.1016/j.neuron.2023.05.028 [paper, repository]

A neural mechanism for terminating decisions.

Journal: Neuron

Authors' code: Zenodo 7946011 (CC-BY-4.0)

Status: code verified

[35416] doi:10.1016/j.nicl.2023.103457 [paper]

Principal component analysis of synaptic density measured with [¹¹C]UCB-J PET in early Alzheimer's disease.

Journal: NeuroImage. Clinical

Status: code on request

[35417] doi:10.1016/j.stemcr.2023.05.018 [paper]

Familial Alzheimer's disease-associated PSEN1 mutations affect neurodevelopment through increased Notch signaling.

Journal: Stem cell reports

Status: code on request

[35418] doi:10.1016/j.stemcr.2023.05.020 [paper, data]

Organoid models of breathing disorders reveal patterning defect of hindbrain neurons caused by PHOX2B-PARMs.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[35419] doi:10.1016/j.xpro.2023.102369 [paper, repository]

Activity-dependent labeling and manipulation of fentanyl-recruited striatal ensembles using ArcTRAP approach.

Journal: STAR protocols

Authors' code: Xxie119/MATLAB (no license)

Status: empty repository

[35420] doi:10.1038/s41467-023-38974-9 [paper]

Four-dimensional mapping of dynamic longitudinal brain subcortical development and early learning functions in infants.

Journal: Nature communications

Status: code on request

[35421] doi:10.1038/s41467-023-39077-1 [paper, data]

Galectin-3 activates spinal microglia to induce inflammatory nociception in wild type but not in mice modelling Alzheimer's disease.

Journal: Nature communications

Status: data only, 2 datasets cited

[35422] doi:10.1038/s41467-023-39326-3 [paper, repository]

Defining diurnal fluctuations in mouse choroid plexus and CSF at high molecular, spatial, and temporal resolution.

Journal: Nature communications

Authors' code: LehtinenLab/diurnal-csf (no license), Zenodo 7933530 (other-open)

Status: code verified, 10 files readable, 1 match

[35423] doi:10.1038/s41467-023-39328-1 [paper, data]

Specific post-translational modifications of soluble tau protein distinguishes Alzheimer's disease and primary tauopathies.

Journal: Nature communications

Status: data only, 7 datasets cited

[35424] doi:10.1038/s41564-023-01405-y [paper, repository]

Modelling viral encephalitis caused by herpes simplex virus 1 infection in cerebral organoids.

Journal: Nature microbiology

Authors' code: broadinstitute/Drop-seq (MIT), rajewsky-lab/HSV1_cerebral_organoids (no license)

Status: code verified, 745 files readable, 5 matches

[35425] doi:10.1038/s41587-023-01833-5 [paper, repository]

Multifunctional microelectronic fibers enable wireless modulation of gut and brain neural circuits.

Journal: Nature biotechnology

Authors' code: HarrisonAllen/Wireless-Controllers-for-Microelectronic-Fibers (no license)

Status: code verified, 22 files readable, 2 matches

[35426] doi:10.1038/s41593-023-01367-8 [paper, repository]

Esr1⁺ hypothalamic-habenula neurons shape aversive states.

Journal: Nature neuroscience

Authors' code: cortex-lab/allenCCF (no license), PierreLeMerre/Esr1_NPX_code (no license)

Status: code verified, 116 files readable, 25 matches

[35427] doi:10.1038/s41598-023-34812-6 [paper, repository]

The effect of familiarity on behavioral oscillations in face perception.

Journal: Scientific reports

Authors' code: OSF ku8q9 (no license)

Status: empty repository

[35428] doi:10.1038/s42003-023-04969-x [paper, repository]

Maturational networks of human fetal brain activity reveal emerging connectivity patterns prior to ex-utero exposure.

Journal: Communications biology

Authors' code: gin.g-node.org/slavakarolis/matnet_paper (no license)

Status: code verified

[35429] doi:10.1136/jnnp-2023-331142 [paper, data]

Systematic druggable genome-wide Mendelian randomisation identifies therapeutic targets for Alzheimer's disease.

Journal: Journal of neurology, neurosurgery, and psychiatry

Status: data only, 3 datasets cited

[35430] doi:10.1172/jci.insight.170270 [paper, repository]

Continuous positive airway pressure increases CSF flow and glymphatic transport.

Journal: JCI insight

Authors' code: xinan-nancy-chen/rOMT (GPL-3.0)

Status: code verified, 81 files readable, 1 match

[35431] doi:10.1186/s12859-023-05378-x [paper, repository]

DeepASDPred: a CNN-LSTM-based deep learning method for Autism spectrum disorders risk RNA identification.

Journal: BMC bioinformatics

Authors' code: Onebear-X/DeepASDPred (no license)

Status: code verified, 5 files readable, 4 matches

[35432] doi:10.1212/wnl.0000000000207484 [paper, repository]

Evaluation of a Clustering Approach to Define Distinct Subgroups of Patients With Migraine to Select Electroacupuncture Treatments.

Journal: Neurology

Authors' code: Jixin-Liu/Study-migraine-heterogeneity-using-fMRI (no license)

Status: code verified, 9 files readable, 2 matches

[35433] doi:10.17912/micropub.biology.000870 [paper, repository]

Characterizing a standardized BioPart for PVQ-specific expression in <i>C. elegans</i>.

Journal: microPublication biology

Authors' code: christianfj/transgenebuilder_v2023_06_13 (no license)

Status: dead link

[35434] doi:10.3389/fimmu.2023.1194881 [paper, data]

Brain transcriptomics reveal the activation of neuroinflammation pathways during acute <i>Orientia tsutsugamushi</i> infection in mice.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[35435] doi:10.3389/fimmu.2023.1220165 [paper, data]

Combination of thalidomide and <i>Clostridium butyricum</i> relieves chemotherapy-induced nausea and vomiting <i>via</i> gut microbiota and vagus nerve activity modulation.

Journal: Frontiers in immunology

Status: data only, 4 datasets cited

[35436] doi:10.3389/fnins.2023.1152578 [paper, repository]

Underlying pharmacological mechanisms of psilocin-induced broadband desynchronization and disconnection of EEG in rats.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 4059491 (other-open), vaclavapiorecka/BRAINBOX (GPL-2.0)

Status: code verified, 16 files readable

[35437] doi:10.3389/fnins.2023.1187790 [paper, repository]

Motor learning in developmental coordination disorder: behavioral and neuroimaging study.

Journal: Frontiers in neuroscience

Authors' code: OSF w8gj6 (no license)

Status: empty repository

[35438] doi:10.3389/fphar.2023.1153478 [paper, data]

Exploring the mechanisms under Zuogui Pill's treatment of ischemic stroke through network pharmacology and <i>in vitro</i> experimental verification.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[35439] doi:10.3758/s13428-023-02098-1 [paper, repository]

From pre-processing to advanced dynamic modeling of pupil data.

Journal: Behavior research methods

Authors' code: parralab.org/isc (no license), SRSteinkamp/pymtrf (BSD-2-Clause), recurrence-plot.tk (no license), lkfink/pupilTutorial (MIT), codeocean:1209338 (no license)

Status: code verified, 26 files readable, 10 matches

[35440] doi:10.7554/elife.86842 [paper, data]

Nova proteins direct synaptic integration of somatostatin interneurons through activity-dependent alternative splicing.

Journal: eLife

Status: data only, 2 datasets cited

Wednesday, 21 June 2023 (19 papers)

[35441] doi:10.1002/hbm.26400 [paper, repository]

Within-network brain connectivity during a social optimism task is related to personal optimism and optimism for in-group members.

Journal: Human brain mapping

Authors' code: alexjamesing/mscca-regression-code (MIT), domamo/Matlab-code-and-example-to-calculate-RR-score-as-related-to-Moser-et-al-2018 (no license)

Status: code verified, 6 files readable

[35442] doi:10.1007/s12035-023-03426-4 [paper, data]

Differential Expression of the β3 Subunit of Voltage-Gated Ca²⁺ Channel in Mesial Temporal Lobe Epilepsy.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[35443] doi:10.1016/j.isci.2023.107186 [paper]

Shedding light on human olfaction: Electrophysiological recordings from sensory neurons in acute slices of olfactory epithelium.

Journal: iScience

Status: code on request

[35444] doi:10.1038/s41398-023-02520-4 [paper, repository]

Structure-function coupling in white matter uncovers the abnormal brain connectivity in Schizophrenia.

Journal: Translational psychiatry

Authors' code: dropbox.com/sh/qhch3x537uymr3c (no license)

Status: code verified

[35445] doi:10.1038/s41467-023-39424-2 [paper, repository]

CAJAL enables analysis and integration of single-cell morphological data using metric geometry.

Journal: Nature communications

Authors' code: zpincus/celltool (GPL-2.0), applied-systems-biology/Dynamic_SPHARM (BSD-3-Clause), CamaraLab/CAJAL (MIT), cajal.readthedocs.io (no license), Zenodo 7976173 (MIT)

Status: code verified, 164 files readable, 12 matches

[35446] doi:10.1038/s41746-023-00859-y [paper]

Deep-learning-enabled brain hemodynamic mapping using resting-state fMRI.

Journal: NPJ digital medicine

Status: code on request

[35447] doi:10.1038/s42003-023-05034-3 [paper, data]

Going beyond established model systems of Alzheimer's disease: companion animals provide novel insights into the neurobiology of aging.

Journal: Communications biology

Status: data only, 4 datasets cited

[35448] doi:10.1101/2023.06.21.545843 [paper, data]

K _ir 2.1 modulation in macrophages sensitises dorsal root ganglion neurons through TNF secretion after nerve injury

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[35449] doi:10.1101/2023.06.21.545901 [paper, data]

Gamma-Oscillation Plasticity Is Mediated by Parvalbumin Interneurons

Journal: bioRxiv (preprint)

Status: data only, 3 datasets cited

[35450] doi:10.1101/2023.06.21.545965 [paper, repository]

A multi-tiered mechanical mechanism shapes the early neural plate

Journal: bioRxiv (preprint)

Authors' code: Zenodo 15458515 (CC-BY-4.0), Zenodo 15458516 (CC-BY-4.0)

Status: code verified, 120 files readable

[35451] doi:10.1126/sciadv.ade8187 [paper, repository]

Cortical topographic motifs emerge in a self-organized map of object space.

Journal: Science advances

Authors' code: OSF djnxb (no license), codeocean:9570390 (no license), Zenodo 8021355 (CC-BY-4.0)

Status: code verified, 15 files readable, 8 matches

[35452] doi:10.1186/s13041-023-01044-8 [paper, data]

BCAT1 controls embryonic neural stem cells proliferation and differentiation in the upper layer neurons.

Journal: Molecular brain

Status: data only, 1 dataset cited

[35453] doi:10.1186/s13054-023-04531-5 [paper, repository]

Modifications of lung microbiota structure in traumatic brain injury ventilated patients according to time and enteral feeding formulas: a prospective randomized study.

Journal: Critical care (London, England)

Authors' code: qiime2/q2-longitudinal (BSD-3-Clause)

Status: code verified, 27 files readable, 2 matches

[35454] doi:10.1186/s40708-023-00193-9 [paper, data]

Enhancing biofeedback-driven self-guided virtual reality exposure therapy through arousal detection from multimodal data using machine learning.

Journal: Brain informatics

Status: data only, 1 dataset cited

[35455] doi:10.1364/boe.492168 [paper, repository]

Two-layered blood-lipid phantom and method to determine absorption and oxygenation employing changes in moments of DTOFs.

Journal: Biomedical optics express

Authors' code: asudakou/Analyzing_TD-NIRS (GPL-3.0)

Status: code verified, 24 files readable, 4 matches

[35456] doi:10.1371/journal.pcbi.1011176 [paper, repository]

Gain modulation and odor concentration invariance in early olfactory networks.

Journal: PLoS computational biology

Authors' code: Zenodo 7897620 (other-open), elwige/gmocion (no license)

Status: code verified, 4 files readable, 2 matches

[35457] doi:10.18632/aging.204822 [paper, data]

Sevoflurane upregulates neuron death process-related Ddit4 expression by NMDAR in the hippocampus.

Journal: Aging

Status: data only, 1 dataset cited

[35458] doi:10.3389/fnins.2023.1193304 [paper]

Ethanol-induced transcriptional and translational changes in Aldh1l1-Egfp/Rpl10a cortical astrocyte cultures.

Journal: Frontiers in neuroscience

Status: data only

[35459] doi:10.3390/brainsci13070977 [paper, data]

Subject-Independent EEG Emotion Recognition Based on Genetically Optimized Projection Dictionary Pair Learning.

Journal: Brain sciences

Status: data only, 2 datasets cited

Tuesday, 20 June 2023 (24 papers)

[35460] doi:10.1007/s11064-023-03957-1 [paper, data]

Targeted Activation of HNF4α by AMPK Inhibits Apoptosis and Ameliorates Neurological Injury Caused by Cardiac Arrest in Rats.

Journal: Neurochemical research

Status: data only, 1 dataset cited

[35461] doi:10.1007/s11571-023-09983-7 [paper, repository]

Single-trial neurodynamics reveal N400 and P600 coupling in language comprehension.

Journal: Cognitive neurodynamics

Authors' code: caurnhammer/cody23rerps (no license)

Status: code verified, 7 files readable

[35462] doi:10.1016/j.biopsych.2023.06.008 [paper, repository]

Genetic Overlap Between Global Cortical Brain Structure, C-Reactive Protein, and White Blood Cell Counts.

Journal: Biological psychiatry

Authors' code: precimed/pleiofdr (GPL-3.0)

Status: code verified, 50 files readable, 3 matches

[35463] doi:10.1016/j.cell.2023.05.043 [paper, repository]

Comparative landscape of genetic dependencies in human and chimpanzee stem cells.

Journal: Cell

Authors' code: tdfair (no license), mhorlbeck/ScreenProcessing (no license)

Status: code verified, 9 files readable

[35464] doi:10.1016/j.ynirp.2023.100176 [paper, data]

Normative values of the brain health index in UK biobank.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

[35465] doi:10.1038/s41467-023-38564-9 [paper, repository]

Detailed characterization of neural selectivity in free viewing primates.

Journal: Nature communications

Authors' code: jcbyts/MarmoV5 (no license), VisNeuroLab/yates-beyond-fixation (no license)

Status: code verified, 358 files readable, 18 matches

[35466] doi:10.1038/s41467-023-39038-8 [paper, repository]

The contribution of inflammatory astrocytes to BBB impairments in a brain-chip model of Parkinson's disease.

Journal: Nature communications

Authors' code: ArnaudDroitLab/de_rus_jacquet_2023 (no license)

Status: code verified, 7 files readable, 2 matches

[35467] doi:10.1038/s41598-023-36611-5 [paper, data]

Differential expression of Dusp1 and immediate early response genes in the hippocampus of rats, subjected to forced swim test.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35468] doi:10.1038/s41598-023-36807-9 [paper, repository]

Author Correction: Defining early changes in Alzheimer's disease from RNA sequencing of brain regions differentially affected by pathology.

Journal: Scientific reports

Authors' code: gboris/AD_RNA-Seq (GPL-3.0)

Status: code verified, 4 files readable

[35469] doi:10.1038/s41598-023-37212-y [paper, repository]

Individual variability in subcortical neural encoding shapes phonetic cue weighting.

Journal: Scientific reports

Authors' code: OSF 2zr9w (no license)

Status: code verified, 7 files readable, 3 matches

[35470] doi:10.1038/s42003-023-04988-8 [paper, data]

Paradoxical pharmacological dissociations result from drugs that enhance delta oscillations but preserve consciousness.

Journal: Communications biology

Status: data only, 2 datasets cited

[35471] doi:10.1073/pnas.2212910120 [paper, data]

Brain-to-brain mechanisms underlying pain empathy and social modulation of pain in the patient-clinician interaction.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[35472] doi:10.1073/pnas.2214505120 [paper, data]

Enhanced amygdala-cingulate connectivity associates with better mood in both healthy and depressive individuals after sleep deprivation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[35473] doi:10.1073/pnas.2221744120 [paper, data]

Single-cell transcriptomic profiling of the mouse cochlea: An atlas for targeted therapies.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 4 datasets cited

[35474] doi:10.1073/pnas.2222016120 [paper, repository]

Gating of homeostatic regulation of intrinsic excitability produces cryptic long-term storage of prior perturbations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: leandro-alonso/homeostasis (no license)

Status: code verified, 9 files readable, 2 matches

[35475] doi:10.1073/pnas.2300387120 [paper, repository]

Regional variability in intracerebral properties of NREM to REM sleep transitions in humans.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 7838640 (CC-BY-4.0)

Status: code verified, 1 file readable, 4 matches

[35476] doi:10.1093/pnasnexus/pgad129 [paper, data]

Experimental expansion of relative telencephalon size improves the main executive function abilities in guppy.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[35477] doi:10.1186/s13024-023-00624-5 [paper, data]

Sex specific molecular networks and key drivers of Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[35478] doi:10.3389/fendo.2023.1200407 [paper, repository]

Ancestral glycoprotein hormone-receptor pathway controls growth in <i>C. elegans</i>.

Journal: Frontiers in endocrinology

Authors' code: jwatteyne/WormSizer (no license), NathanDeFruyt/DefecationAnalysisBeetsLab (no license)

Status: code verified, 11 files readable, 3 matches

[35479] doi:10.3389/fnagi.2023.1191991 [paper, repository]

Shared alterations in hippocampal structural covariance in subjective cognitive decline and migraine.

Journal: Frontiers in aging neuroscience

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0)

Status: code verified, 50 files readable, 1 match

[35480] doi:10.3389/fnins.2023.1203690 [paper, repository]

Gender effects on autism spectrum disorder: a multi-site resting-state functional magnetic resonance imaging study of transcriptome-neuroimaging.

Journal: Frontiers in neuroscience

Authors' code: helab207/Alterations-in-Connectome-Dynamics-in-ASD-main (no license), frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 16 files readable, 2 matches

[35481] doi:10.3390/brainsci13060975 [paper, repository]

Electrophysiological Comparison of Cumulative Area and Non-Symbolic Number Judgments.

Journal: Brain sciences

Authors' code: OSF rj7us (no license)

Status: code verified, 1 file readable

[35482] doi:10.7554/elife.83660 [paper, repository]

Impact of social isolation on grey matter structure and cognitive functions: A population-based longitudinal neuroimaging study.

Journal: eLife

Authors' code: LaurenzLammer/socialisolation (no license)

Status: code verified, 36 files readable, 13 matches

[35483] doi:10.7554/elife.85792 [paper, repository]

Homeodomain-interacting protein kinase maintains neuronal homeostasis during normal <i>Caenorhabditis elegans</i> aging and systemically regulates longevity from serotonergic and GABAergic neurons.

Journal: eLife

Authors' code: samuelsonlab-urmc/hpk1_manuscript_2023 (GPL-3.0)

Status: code verified, 4 files readable, 5 matches

Monday, 19 June 2023 (29 papers)

[35484] doi:10.1002/hbm.26398 [paper, repository]

Neural dissociation between reward and salience prediction errors through the lens of optimistic bias.

Journal: Human brain mapping

Authors' code: OSF zgmkx (no license)

Status: code verified, 2 files readable, 4 matches

[35485] doi:10.1002/hbm.26399 [paper, repository]

An automatic interpretable deep learning pipeline for accurate Parkinson's disease diagnosis using quantitative susceptibility mapping and T1-weighted images.

Journal: Human brain mapping

Authors' code: wangyidada/PD_diagnosis (no license)

Status: code verified, 48 files readable, 7 matches

[35486] doi:10.1016/j.dcn.2023.101271 [paper, repository]

Delineating disorder-general and disorder-specific dimensions of psychopathology from functional brain networks in a developmental clinical sample.

Journal: Developmental cognitive neuroscience

Authors' code: OSF gt9dk (no license)

Status: code verified, 7 files readable, 4 matches

[35487] doi:10.1016/j.gendis.2023.04.017 [paper, data]

Transcriptomic analysis identifies the neuropeptide cortistatin (CORT) as an inhibitor of temozolomide (TMZ) resistance by suppressing the NF-κB-MGMT signaling axis in human glioma.

Journal: Genes & diseases

Status: data only, 1 dataset cited

[35488] doi:10.1016/j.isci.2023.107138 [paper, repository]

How and when EEG reflects changes in neuronal connectivity due to time awake.

Journal: iScience

Authors' code: bycycle-tools/bycycle (Apache-2.0), snipeso/chART (MIT), ElioS-S/pupil-size (GPL-3.0)

Status: code verified, 153 files readable, 5 matches

[35489] doi:10.1016/j.ohx.2023.e00443 [paper, repository]

OptoPi: An open source flexible platform for the analysis of small animal behaviour.

Journal: HardwareX

Authors' code: folterj/BioImageOperation (GPL-3.0)

Status: code verified, 101 files readable, 2 matches

[35490] doi:10.1016/j.xgen.2023.100342 [paper, repository]

Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes.

Journal: Cell genomics

Authors' code: mukamel-lab/robustlink (MIT), Zenodo 7911853 (other-open), mukamel-lab/SingleCellFusion (GPL-3.0), broadinstitute/ABC-Enhancer-Gene-Prediction (MIT), open2c/cooler (BSD-3-Clause), fangmingxie/robustlink (MIT)

Status: code verified, 160 files readable, 13 matches

[35491] doi:10.1038/s41467-023-38580-9 [paper, repository]

Neural correlates of hierarchical predictive processes in autistic adults.

Journal: Nature communications

Authors' code: Zenodo 7808070 (CC-BY-4.0)

Status: code verified, 16 files readable, 11 matches

[35492] doi:10.1038/s41539-023-00169-8 [paper, repository]

A randomized controlled trial on the digital socio-emotional competence training Zirkus Empathico for preschoolers.

Journal: NPJ science of learning

Authors' code: naumsand.github.io/zerp (no license)

Status: code verified

[35493] doi:10.1038/s41593-023-01351-2 [paper, repository]

Gradients of neurotransmitter receptor expression in the macaque cortex.

Journal: Nature neuroscience

Authors' code: seanfw/genemapper (no license), seanfw/macaque-receptor-gradients (no license)

Status: code verified, 47 files readable

[35494] doi:10.1038/s41593-023-01365-w [paper, data]

Control and coding of pupil size by hypothalamic orexin neurons.

Journal: Nature neuroscience

Status: code on request, 1 dataset cited

[35495] doi:10.1038/s41598-023-36797-8 [paper, data]

Neural correlates of visual and tactile path integration and their task related modulation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35496] doi:10.1038/s41598-023-36860-4 [paper, repository]

EEG alpha band functional connectivity reveals distinct cortical dynamics for overt and covert emotional face processing.

Journal: Scientific reports

Authors' code: OSF db8qv (no license)

Status: code verified, 1 file readable

[35497] doi:10.1038/s41598-023-37158-1 [paper, data]

Differential and cooperative effects of IL-25 and IL-33 on T helper cells contribute to cryptococcal virulence and brain infection.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35498] doi:10.1038/s42003-023-05029-0 [paper, repository]

Functional connectivity gradients of the cingulate cortex.

Journal: Communications biology

Authors' code: MICA-MNI/BrainSpace (BSD-3-Clause), OSF aq9wk (no license)

Status: code verified, 134 files readable, 3 matches

[35499] doi:10.1111/acel.13905 [paper]

The role of aging and brain-derived neurotrophic factor signaling in expression of base excision repair genes in the human brain.

Journal: Aging cell

Status: data only

[35500] doi:10.1111/cns.14316 [paper, data]

Integrated transcriptomics reveals the brain and blood biomarkers in Alzheimer's disease.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[35501] doi:10.1177/03010066231175014 [paper, repository]

Effects of cortical distance on the Ebbinghaus and Delboeuf illusions.

Journal: Perception

Authors' code: OSF guhsf (no license)

Status: code verified, 19 files readable, 4 matches

[35502] doi:10.1186/s12915-023-01642-x [paper, data]

A green leaf volatile, (Z)-3-hexenyl-acetate, mediates differential oviposition by Spodoptera frugiperda on maize and rice.

Journal: BMC biology

Status: data only, 1 dataset cited

[35503] doi:10.1186/s12950-023-00346-x [paper, data]

Ischemic stroke-related gene expression profiles across species: a meta-analysis.

Journal: Journal of inflammation (London, England)

Status: data only, 4 datasets cited

[35504] doi:10.1186/s40478-023-01581-2 [paper, data]

Humanized APOE genotypes influence lifespan independently of tau aggregation in the P301S mouse model of tauopathy.

Journal: Acta neuropathologica communications

Status: code on request, 1 dataset cited

[35505] doi:10.15252/embr.202256399 [paper, repository]

PARK15/FBXO7 is dispensable for PINK1/Parkin mitophagy in iNeurons and HeLa cell systems.

Journal: EMBO reports

Authors' code: harperlaboratory/FBXO7 (MIT), Zenodo 7803294 (CC-BY-4.0), tlambert03/otfsearch (no license)

Status: code verified, 16 files readable

[35506] doi:10.3389/fninf.2023.1207721 [paper, repository]

Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility.

Journal: Frontiers in neuroinformatics

Authors' code: trendscenter/coinstac (MIT)

Status: code verified, 222 files readable, 1 match

[35507] doi:10.3389/fnins.2023.1198243 [paper, data]

Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[35508] doi:10.3389/fnins.2023.1205819 [paper, repository]

Insulin-like growth factor 1 supplementation supports motor coordination and affects myelination in preterm pigs.

Journal: Frontiers in neuroscience

Authors' code: Comparative-Pediatrics-and-Nutrition (no license)

Status: code verified

[35509] doi:10.3390/diagnostics13122110 [paper, data]

In-Domain Transfer Learning Strategy for Tumor Detection on Brain MRI.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[35510] doi:10.5498/wjp.v13.i6.386 [paper]

Abnormal volumetric brain morphometry and cerebral blood flow in adolescents with depression.

Journal: World journal of psychiatry

Status: code on request

[35511] doi:10.7554/elife.84685 [paper, repository]

Tracing the development and lifespan change of population-level structural asymmetry in the cerebral cortex.

Journal: eLife

Authors' code: jamesmroe/PopAsym (no license), OSF dv9um (no license)

Status: code verified, 17 files readable, 17 matches

[35512] doi:10.7554/elife.85006 [paper, repository]

Brain structure and function link to variation in biobehavioral dimensions across the psychopathological continuum.

Journal: eLife

Authors' code: allera/llera_elife_2019_1 (GPL-2.0)

Status: code verified, 70 files readable

Sunday, 18 June 2023 (1 paper)

[35513] doi:10.1111/bpa.13180 [paper, repository]

Human amygdala involvement in Alzheimer's disease revealed by stereological and dia-PASEF analysis.

Journal: Brain pathology (Zurich, Switzerland)

Authors' code: vdemichev/diann (other)

Status: code verified, 441 files readable

Saturday, 17 June 2023 (9 papers)

[35514] doi:10.1002/advs.202301505 [paper, data]

Disruption of the Clock Component Bmal1 in Mice Promotes Cancer Metastasis through the PAI-1-TGF-β-myoCAF-Dependent Mechanism.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[35515] doi:10.1007/s00285-023-01938-0 [paper]

A modification to the Kuramoto model to simulate epileptic seizures as synchronization.

Journal: Journal of mathematical biology

Status: code on request

[35516] doi:10.1016/j.isci.2023.107137 [paper]

Glucocorticoid receptor-mediated <i>Nr1d1</i> chromatin circadian misalignment in stress-induced irritable bowel syndrome.

Journal: iScience

Status: data only

[35517] doi:10.1038/s41467-023-39152-7 [paper, repository]

Direct laser writing of 3D electrodes on flexible substrates.

Journal: Nature communications

Authors' code: gardner-lab/printimage (no license)

Status: code verified, 48 files readable

[35518] doi:10.1038/s41467-023-39307-6 [paper, data]

Cannabidiol inhibits Na_v channels through two distinct binding sites.

Journal: Nature communications

Status: data only, 4 datasets cited

[35519] doi:10.3390/biomedicines11061746 [paper]

Rhythmic TMS as a Feasible Tool to Uncover the Oscillatory Signatures of Audiovisual Integration.

Journal: Biomedicines

Status: code on request

[35520] doi:10.3390/brainsci13060963 [paper, repository]

Cortical Structure Differences in Relation to Age, Sexual Attractions, and Gender Dysphoria in Adolescents: An Examination of Mean Diffusivity and T1 Relaxation Time.

Journal: Brain sciences

Authors' code: borealisdata.ca/dataset.xhtml (no license)

Status: code verified

[35521] doi:10.3390/genes14061285 [paper, repository]

Metabolic Pathway Pairwise-Based Signature as a Potential Non-Invasive Diagnostic Marker in Alzheimer's Disease Patients.

Journal: Genes

Authors' code: mbq/Boruta (no license), ChenHuangMUST/MPP-signature-for-AD-diagnosis (no license)

Status: code verified, 23 files readable, 5 matches

[35522] doi:10.3390/s23125680 [paper, data]

FCAN-XGBoost: A Novel Hybrid Model for EEG Emotion Recognition.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 16 June 2023 (23 papers)

[35523] doi:10.1002/advs.202301110 [paper, data]

PDGF-BB-Dependent Neurogenesis Buffers Depressive-Like Behaviors by Inhibition of GABAergic Projection from Medial Septum to Dentate Gyrus.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[35524] doi:10.1002/hbm.26395 [paper]

Using cortico-cerebellar structural patterns to classify early- and late-trained musicians.

Journal: Human brain mapping

Status: code on request

[35525] doi:10.1016/j.bjao.2023.100145 [paper, repository]

Repurposing electroencephalogram monitoring of general anaesthesia for building biomarkers of brain ageing: an exploratory study.

Journal: BJA open

Authors' code: coffeine-labs/coffeine (MIT)

Status: code verified, 17 files readable, 3 matches

[35526] doi:10.1016/j.crmeth.2023.100504 [paper, data]

A comprehensive assay of social motivation reveals sex-specific roles of autism-associated genes and oxytocin.

Journal: Cell reports methods

Status: code on request, 1 dataset cited

[35527] doi:10.1016/j.crmeth.2023.100506 [paper, data]

Directed stepwise tracing of polysynaptic neuronal circuits with replication-deficient pseudorabies virus.

Journal: Cell reports methods

Status: code on request, 1 dataset cited

[35528] doi:10.1016/j.dcn.2023.101269 [paper, repository]

Neurocognitive basis of model-based decision making and its metacontrol in childhood.

Journal: Developmental cognitive neuroscience

Authors' code: ClaireSmid/Neurocognitive_Basis_Metacontrol (no license), ClaireSmid/Neurocognitive_Underpinnings_Metacontrol (no license)

Status: code verified, 60 files readable, 4 matches

[35529] doi:10.1016/j.isci.2023.107156 [paper, repository]

Systematic analysis and optimization of early warning signals for critical transitions using distribution data.

Journal: iScience

Authors' code: Zenodo 7844650 (other-open), daniele-proverbio/ews_optimise (Apache-2.0)

Status: code verified, 48 files readable, 1 match

[35530] doi:10.1038/s41467-023-38943-2 [paper, repository]

Mechanisms of simultaneous linear and nonlinear computations at the mammalian cone photoreceptor synapse.

Journal: Nature communications

Authors' code: Zenodo 8008367 (MIT)

Status: code verified

[35531] doi:10.1038/s41467-023-39069-1 [paper]

Deep optoacoustic localization microangiography of ischemic stroke in mice.

Journal: Nature communications

Status: code on request

[35532] doi:10.1038/s41598-023-36639-7 [paper, repository]

Do radiomics or diffusion-tensor images provide additional information to predict brain amyloid-beta positivity?

Journal: Scientific reports

Authors' code: HyunnaLee/StrokeOnset (no license)

Status: code verified, 62 files readable, 3 matches

[35533] doi:10.1038/s43856-023-00318-5 [paper, repository]

Multimodal MRI improves diagnostic accuracy and sensitivity to longitudinal change in amyotrophic lateral sclerosis.

Journal: Communications medicine

Authors' code: cmrr.umn.edu/downloads/alsmultimodal (no license)

Status: code verified

[35534] doi:10.1088/1741-2552/acd9ee [paper, repository]

Infection diagnosis in hydrocephalus CT images: a domain enriched attention learning approach.

Journal: Journal of neural engineering

Authors' code: Schiff-Lab/Brain-CT-Image-Infection-Machine-Learning (no license)

Status: dead link

[35535] doi:10.1186/s11689-023-09487-9 [paper, repository]

Event-related potential (ERP) markers of 22q11.2 deletion syndrome and associated psychosis.

Journal: Journal of neurodevelopmental disorders

Authors' code: DouweHorsthuis (no license)

Status: code verified

[35536] doi:10.1186/s12859-023-05230-2 [paper, repository]

WormTensor: a clustering method for time-series whole-brain activity data from C. elegans.

Journal: BMC bioinformatics

Authors' code: hub.docker.com/r/yamaken37 (no license), rikenbit/WormTimeSeries (no license)

Status: code verified, 255 files readable, 5 matches

[35537] doi:10.1371/journal.pcbi.1011188 [paper, repository]

Distinguishing between different percolation regimes in noisy dynamic networks with an application to epileptic seizures.

Journal: PLoS computational biology

Authors' code: KolaczykResearch/RG-HMM (no license)

Status: code verified, 59 files readable, 10 matches

[35538] doi:10.1523/eneuro.0177-22.2023 [paper, repository]

Modulation of Visual Contrast Sensitivity with tRNS across the Visual System, Evidence from Stimulation and Simulation.

Journal: eNeuro

Authors' code: vabelyaeva/modeling_visual_system (no license)

Status: code verified, 8 files readable, 5 matches

[35539] doi:10.3389/fnagi.2023.1161068 [paper, data]

Identification and prediction of m7G-related Alzheimer's disease subtypes: insights from immune infiltration and machine learning models.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[35540] doi:10.3389/fnbot.2023.1166911 [paper, data]

Bidirectional recurrent learning of inverse dynamic models for robots with elastic joints: a real-time real-world implementation.

Journal: Frontiers in neurorobotics

Status: data only, 1 dataset cited

[35541] doi:10.3390/diagnostics13122094 [paper, data]

Exploring the Power of Deep Learning: Fine-Tuned Vision Transformer for Accurate and Efficient Brain Tumor Detection in MRI Scans.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[35542] doi:10.3390/ijms241210239 [paper, data]

Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[35543] doi:10.3892/ijo.2023.5536 [paper, data]

Activated <i>KRAS</i> reprograms neural progenitor cells to glioma stem cell‑like phenotype.

Journal: International journal of oncology

Status: data only, 1 dataset cited

[35544] doi:10.3892/mmr.2023.13032 [paper, data]

Age‑related brainstem degeneration through microRNA modulation in mice.

Journal: Molecular medicine reports

Status: data only, 1 dataset cited

[35545] doi:10.7554/elife.84537 [paper, repository]

Behavioral dissection of hunger states in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: eLife

Authors' code: PletcherLab/FLIC_R_Code (MIT)

Status: code verified, 19 files readable

Thursday, 15 June 2023 (41 papers)

[35546] doi:10.1002/hbm.26390 [paper, repository]

Programming of subthalamic nucleus deep brain stimulation with hyperdirect pathway and corticospinal tract-guided parameter suggestions.

Journal: Human brain mapping

Authors' code: gitlab.switch.ch/brain-stimulation-mapping/2023_dbsprogramming-hdp-cst (no license)

Status: code verified, 100 files readable, 10 matches

[35547] doi:10.1002/hbm.26393 [paper, repository]

Improved prediction of glioma-related aphasia by diffusion MRI metrics, machine learning, and automated fiber bundle segmentation.

Journal: Human brain mapping

Authors' code: CUBIGL/Predicting_aphasia_based_on_diffusion_MRI_metrics_using_ML_with_automatic_fiber_bundle_segmentation (no license), CUB-IGL/Predicting_aphasia_based_on_diffusion_MRI_metrics_using_ML_with_automatic_fiber_bundle_segmentation (no license)

Status: dead link

[35548] doi:10.1002/hbm.26396 [paper, repository]

Sparsity-guided multiple functional connectivity patterns for classification of schizophrenia via convolutional network.

Journal: Human brain mapping

Authors' code: pancccool/SMFC-Net (no license)

Status: code verified, 7 files readable

[35549] doi:10.1002/mrm.29741 [paper, repository]

Sampling strategies and integrated reconstruction for reducing distortion and boundary slice aliasing in high-resolution 3D diffusion MRI.

Journal: Magnetic resonance in medicine

Authors' code: liziyu0929/distortion-free-3d-diffusion-mri (MIT)

Status: code verified, 52 files readable, 1 match

[35550] doi:10.1007/s00429-023-02654-7 [paper, data]

A new map of the rat isocortex and proisocortex: cytoarchitecture and M₂ receptor distribution patterns.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[35551] doi:10.1007/s11356-023-27916-z [paper, data]

Neuroprotective and nephroprotective effects of Ircinia sponge in polycyclic aromatic hydrocarbons (PAHs) induced toxicity in animal model: a pharmacological and computational approach.

Journal: Environmental science and pollution research international

Status: data only, 1 dataset cited

[35552] doi:10.1016/j.ebiom.2023.104653 [paper, data]

Reprogramming astrocytic NDRG2/NF-κB/C3 signaling restores the diabetes-associated cognitive dysfunction.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[35553] doi:10.1016/j.isci.2023.107129 [paper]

Polarized SCAR and the Arp2/3 complex regulate apical cortical remodeling in asymmetrically dividing neuroblasts.

Journal: iScience

Status: code on request

[35554] doi:10.1016/j.isci.2023.107136 [paper]

Glutamine supplementation reverses manganese neurotoxicity by eliciting the mitochondrial unfolded protein response.

Journal: iScience

Status: code on request

[35555] doi:10.1016/j.isci.2023.107142 [paper]

High-throughput longitudinal electrophysiology screening of mature chamber-specific hiPSC-CMs using optical mapping.

Journal: iScience

Status: code on request

[35556] doi:10.1016/j.isci.2023.107148 [paper]

Fixation-related electrical potentials during a free visual search task reveal the timing of visual awareness.

Journal: iScience

Status: code on request

[35557] doi:10.1016/j.isci.2023.107149 [paper]

Chemogenetic and optogenetic stimulation of zona incerta GABAergic neurons ameliorates motor impairment in Parkinson's disease.

Journal: iScience

Status: code on request

[35558] doi:10.1016/j.isci.2023.107150 [paper]

Gravity-efficient motor control is associated with contraction-dependent intracortical inhibition.

Journal: iScience

Status: code on request

[35559] doi:10.1016/j.jpha.2023.06.006 [paper]

Characterization of natural peptides in Pheretima by integrating proteogenomics and label-free peptidomics.

Journal: Journal of pharmaceutical analysis

Status: data only

[35560] doi:10.1016/j.nbas.2023.100079 [paper, repository]

Dopamine D1-signaling modulates maintenance of functional network segregation in aging.

Journal: Aging brain

Authors' code: robinpedersen/D1DR_FC_PLS (no license)

Status: empty repository, 1 file readable

[35561] doi:10.1038/s41467-023-38671-7 [paper, repository]

Human orbitofrontal cortex signals decision outcomes to sensory cortex during behavioral adaptations.

Journal: Nature communications

Authors' code: Zenodo 7805722 (other-open), bin-a-wang/reversallearning_lofc_s1 (no license)

Status: code verified, 58 files readable, 9 matches

[35562] doi:10.1038/s41467-023-39142-9 [paper, repository]

A dorsomedial prefrontal cortex-based dynamic functional connectivity model of rumination.

Journal: Nature communications

Authors' code: cocoanlab/rumination (no license), Zenodo 7923949 (other-open), canlab/CanlabCore (GPL-2.0), cocoanlab/cocoanCORE (GPL-3.0), didch1789/rumination (no license)

Status: code verified, 2,151 files readable, 9 matches

[35563] doi:10.1038/s41467-023-39303-w [paper, repository]

Combinatorial encoding of odors in the mosquito antennal lobe.

Journal: Nature communications

Authors' code: neuralsystems/temporal_classification (no license), neuralsystems/NatComm2023 (no license), Zenodo 7969005 (other-open)

Status: code verified, 3 files readable

[35564] doi:10.1038/s41531-023-00543-8 [paper, repository]

Focused ultrasound thalamotomy for tremor treatment impacts the cerebello-thalamo-cortical network.

Journal: NPJ Parkinson's disease

Authors' code: nmr.mgh.harvard.edu/bid/download.html (no license)

Status: dead link

[35565] doi:10.1038/s41591-023-02365-w [paper, repository]

Effects of urban living environments on mental health in adults.

Journal: Nature medicine

Authors' code: jiayuanqqxu/scca-regression (no license)

Status: code verified, 2 files readable

[35566] doi:10.1038/s41591-023-02397-2 [paper, repository]

Clonal hematopoiesis is associated with protection from Alzheimer's disease.

Journal: Nature medicine

Authors' code: juliabelk/CHIP_and_AD (no license), Zenodo 7809346 (other-open)

Status: code verified, 4 files readable

[35567] doi:10.1038/s41597-023-02260-6 [paper, repository]

High-density scalp electroencephalogram dataset during sensorimotor rhythm-based brain-computer interfacing.

Journal: Scientific data

Authors' code: Junichi-Ushiba-Laboratory/pj-hd-smrbmi (no license)

Status: code verified, 44 files readable

[35568] doi:10.1038/s41597-023-02287-9 [paper, repository]

EEG-based BCI Dataset of Semantic Concepts for Imagination and Perception Tasks.

Journal: Scientific data

Authors' code: hWils/Semantics-EEG-Perception-and-Imagination (no license)

Status: code verified, 9 files readable, 9 matches

[35569] doi:10.1038/s41598-023-36775-0 [paper, data]

Microgravity induces overconfidence in perceptual decision-making.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35570] doi:10.1038/s41598-023-36823-9 [paper, data]

Differences in engineers' brain activity when CAD modelling from isometric and orthographic projections.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35571] doi:10.1159/000530312 [paper, data]

Effects of Psychotherapy on Glutamatergic Neurotransmission.

Journal: Neuropsychobiology

Status: data only, 1 dataset cited

[35572] doi:10.1172/jci164118 [paper, data]

Deficiency in the omega-3 lysolipid transporter Mfsd2a leads to aberrant oligodendrocyte lineage development and hypomyelination.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[35573] doi:10.1172/jci167501 [paper, data]

Complement C3aR depletion reverses HIF-1α-induced metabolic impairment and enhances microglial response to Aβ pathology.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[35574] doi:10.1177/17562864231180715 [paper, repository]

Arterial stiffness and its influence on cerebral morphology and cognitive function.

Journal: Therapeutic advances in neurological disorders

Authors' code: psmd-marker.com (no license)

Status: code verified

[35575] doi:10.1186/s13195-023-01250-5 [paper, repository]

Immediate word recall in cognitive assessment can predict dementia using machine learning techniques.

Journal: Alzheimer's research & therapy

Authors' code: figshare 16817506 (CC-BY-4.0), figshare 16964662 (CC-BY-4.0)

Status: code verified, 24 files readable, 6 matches

[35576] doi:10.1371/journal.pone.0287121 [paper, data]

Global metabolomics study on the pathogenesis of pediatric medulloblastoma via UPLC- Q/E-MS/MS.

Journal: PloS one

Status: data only, 1 dataset cited

[35577] doi:10.3389/fmicb.2023.1182695 [paper, data]

The genetic variability and evolution of red-spotted grouper nervous necrosis virus quasispecies can be associated with its virulence.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[35578] doi:10.3389/fncir.2023.952921 [paper, repository]

mEMbrain: an interactive deep learning MATLAB tool for connectomic segmentation on commodity desktops.

Journal: Frontiers in neural circuits

Authors' code: lichtman.rc.fas.harvard.edu/membrain/code (no license), lichtman.rc.fas.harvard.edu/membrain (no license)

Status: code found, still to be checked

[35579] doi:10.3389/fncom.2023.1164595 [paper, repository]

Robust and efficient representations of dynamic stimuli in hierarchical neural networks via temporal smoothing.

Journal: Frontiers in computational neuroscience

Authors' code: DuhoSihn/STEC_dynamic (no license)

Status: code verified, 13 files readable, 4 matches

[35580] doi:10.3389/fnhum.2023.1158483 [paper, data]

Prevalence of comorbidities post mild traumatic brain injuries: a traumatic brain injury model systems study.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[35581] doi:10.3389/fninf.2023.1130845 [paper, repository]

A fast and robust hippocampal subfields segmentation: HSF revealing lifespan volumetric dynamics.

Journal: Frontiers in neuroinformatics

Authors' code: clementpoiret/ROILoc (MIT)

Status: code verified, 12 files readable, 1 match

[35582] doi:10.3389/fnint.2023.935177 [paper, repository]

Toward reproducible models of sequence learning: replication and analysis of a modular spiking network with reward-based learning.

Journal: Frontiers in integrative neuroscience

Authors' code: Zenodo 6418714 (no license), modeldb:266774 (no license), Zenodo 5752597 (other-at)

Status: code verified, 113 files readable, 2 matches

[35583] doi:10.3389/fnmol.2023.1137123 [paper, data]

Single-cell RNA sequencing of neural stem cells derived from human trisomic iPSCs reveals the abnormalities during neural differentiation of Down syndrome.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[35584] doi:10.3389/fnmol.2023.1140785 [paper, repository]

Visualizing Arc protein dynamics and localization in the mammalian brain using AAV-mediated <i>in situ</i> gene labeling.

Journal: Frontiers in molecular neuroscience

Authors' code: MNM-LU/Arc-HITI (no license)

Status: code verified, 8 files readable, 1 match

[35585] doi:10.3390/jimaging9060120 [paper, repository]

A Computational Approach to Hand Pose Recognition in Early Modern Paintings.

Journal: Journal of imaging

Authors' code: VBernasconi/GAB_project (no license)

Status: code verified, 3 files readable, 1 match

[35586] doi:10.7554/elife.80923 [paper, repository]

Flexible specificity of memory in <i>Drosophila</i> depends on a comparison between choices.

Journal: eLife

Authors' code: mehrabmodi1/Drosophila_flexible_recall (MIT)

Status: code verified, 10 files readable, 16 matches

Wednesday, 14 June 2023 (33 papers, 30 on this page)

[35587] doi:10.1007/s12021-023-09634-6 [paper, repository]

Applying Joint Graph Embedding to Study Alzheimer's Neurodegeneration Patterns in Volumetric Data.

Journal: Neuroinformatics

Authors' code: twardlab/joint_graph_embedding_AD (no license)

Status: code verified, 18 files readable, 3 matches

[35588] doi:10.1016/j.dcn.2023.101268 [paper, repository]

Functional MRI responses to naturalistic stimuli are increasingly typical across early childhood.

Journal: Developmental cognitive neuroscience

Authors' code: BrayNeuroimagingLab/BNL_open (no license)

Status: code verified, 160 files readable, 5 matches

[35589] doi:10.1016/j.isci.2023.107099 [paper]

Behavioral analysis through the lifespan of <i>disc1</i> mutant zebrafish identifies defects in sensorimotor transformation.

Journal: iScience

Status: code on request

[35590] doi:10.1016/j.isci.2023.107117 [paper]

A proton-inhibited DEG/ENaC ion channel maintains neuronal ionstasis and promotes neuronal survival under stress.

Journal: iScience

Status: code on request

[35591] doi:10.1016/j.isci.2023.107123 [paper, repository]

Probabilistic integration of preceding responses explains response bias in perceptual decision making.

Journal: iScience

Authors' code: Zenodo 8007314 (other-open), schluneggerdaniel/iscience-2023 (MIT)

Status: code verified, 102 files readable, 4 matches

[35592] doi:10.1016/j.jare.2023.06.001 [paper, data]

CRISPR/Cas9 based gene editing of Frizzled class receptor 6 (FZD6) reveals its role in depressive symptoms through disrupting Wnt/β-catenin signaling pathway.

Journal: Journal of advanced research

Status: data only, 1 dataset cited

[35593] doi:10.1016/j.neuron.2023.05.016 [paper]

Early molecular layer interneuron hyperactivity triggers Purkinje neuron degeneration in SCA1.

Journal: Neuron

Status: code on request

[35594] doi:10.1038/s41467-023-38932-5 [paper, repository]

The structure of phosphatidylinositol remodeling MBOAT7 reveals its catalytic mechanism and enables inhibitor identification.

Journal: Nature communications

Authors' code: VirtualFlow/VFVS (GPL-2.0)

Status: code verified, 33 files readable

[35595] doi:10.1038/s41540-023-00288-3 [paper, repository]

Efficient, cell-based simulations of cardiac electrophysiology; The Kirchhoff Network Model (KNM).

Journal: NPJ systems biology and applications

Authors' code: Zenodo 7848664 (CC-BY-4.0), mfem.org/download (no license)

Status: code verified, 7 files readable, 2 matches

[35596] doi:10.1038/s41598-022-22497-2 [paper]

The role of superficial and deep layers in the generation of high frequency oscillations and interictal epileptiform discharges in the human cortex.

Journal: Scientific reports

Status: code on request

[35597] doi:10.1038/s41598-023-35939-2 [paper, repository]

Reduced vmPFC-insula functional connectivity in generalized anxiety disorder: a Bayesian confirmation study.

Journal: Scientific reports

Authors' code: OSF vf7s4 (no license), OSF j29qv (no license)

Status: code verified, 11 files readable, 6 matches

[35598] doi:10.1038/s41598-023-36727-8 [paper, repository]

Single neonatal estrogen implant sterilizes female animals by decreasing hypothalamic KISS1 expression.

Journal: Scientific reports

Authors' code: cjpark85/Rat_Hypothalamus_scRNAseq (MIT)

Status: code verified, 3 files readable, 3 matches

[35599] doi:10.1098/rsob.220353 [paper, repository]

Neuroanatomical characterization of the Nmu-Cre knock-in mice reveals an interconnected network of unique neuropeptidergic cells.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.6662875 (no license)

Status: code found, still to be checked

[35600] doi:10.1098/rspb.2023.0378 [paper, repository]

Association between arginine vasopressin receptor 1A (<i>AVPR1A</i>) polymorphism and inequity aversion.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.6672285 (no license)

Status: code found, still to be checked

[35601] doi:10.1111/jne.13303 [paper, repository]

Measuring oxytocin release in response to gavage: Computational modelling and assay validation.

Journal: Journal of neuroendocrinology

Authors' code: HypoModel/MagNet (MIT)

Status: code verified, 10 files readable

[35602] doi:10.1111/psyp.14365 [paper, data]

Managing EEG studies: How to prepare and what to do once data collection has begun.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[35603] doi:10.1126/sciadv.adf8332 [paper, repository]

In vivo mapping of pharmacologically induced functional reorganization onto the human brain's neurotransmitter landscape.

Journal: Science advances

Authors' code: rotman-baycrest.on.ca (no license)

Status: code verified

[35604] doi:10.1186/s10194-023-01608-y [paper, data]

Repeat mild traumatic brain injuries (RmTBI) modify nociception and disrupt orexinergic connectivity within the descending pain pathway.

Journal: The journal of headache and pain

Status: data only, 1 dataset cited

[35605] doi:10.21037/qims-22-1367 [paper, repository]

Modality preserving U-Net for segmentation of multimodal medical images.

Journal: Quantitative imaging in medicine and surgery

Authors' code: BinsonW/MPU-Net (no license)

Status: code verified, 5 files readable

[35606] doi:10.3389/fendo.2023.1166076 [paper, repository]

Germline loss-of-function &lt;i&gt;PAM&lt;/i&gt; variants are enriched in subjects with pituitary hypersecretion.

Journal: Frontiers in endocrinology

Authors' code: WenchaoLin/targeted-phasing-consensus (no license), NICHD-BSPC/spatial_clustering (MIT), lh3/bwa (GPL-3.0), HAShihab/HIPred (GPL-3.0), brentp/slivar (MIT)

Status: code verified, 121 files readable, 4 matches

[35607] doi:10.3389/fgene.2023.1175864 [paper, data]

Altered DNA methylome profiles of blood leukocytes in Chinese patients with mild cognitive impairment and Alzheimer's disease.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[35608] doi:10.3389/fmolb.2023.1196328 [paper]

COVID-19 and brain-heart-lung microbial fingerprints in Italian cadavers.

Journal: Frontiers in molecular biosciences

Status: data only

[35609] doi:10.3389/fninf.2023.1174049 [paper, repository]

SNAP: a structure-based neuron morphology reconstruction automatic pruning pipeline.

Journal: Frontiers in neuroinformatics

Authors' code: Vaa3D (no license), vaa3d/vaa3d_tools (MIT)

Status: code verified, 2,000 files readable

[35610] doi:10.3389/fnins.2023.1167134 [paper, repository]

Spiking neural network with working memory can integrate and rectify spatiotemporal features.

Journal: Frontiers in neuroscience

Authors' code: fangwei123456/spikingjelly (Apache-2.0)

Status: code verified, 513 files readable, 3 matches

[35611] doi:10.3389/fnins.2023.1173778 [paper, data]

MSATNet: multi-scale adaptive transformer network for motor imagery classification.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[35612] doi:10.3389/fnut.2023.1210726 [paper, data]

The body mass index is associated with increased temporal variability of functional connectivity in brain reward system.

Journal: Frontiers in nutrition

Status: data only, 1 dataset cited

[35613] doi:10.3389/fphar.2023.1206104 [paper, repository]

Morphine pharmacokinetics and opioid transporter expression at the blood-retina barrier of male and female mice.

Journal: Frontiers in pharmacology

Authors' code: thebergular/morphine_sex_differences_brb_bbb (no license)

Status: code verified, 8 files readable

[35614] doi:10.3389/ftox.2023.1162749 [paper, data]

Epigenetic analysis in a murine genetic model of Gulf War illness.

Journal: Frontiers in toxicology

Status: data only, 1 dataset cited

[35615] doi:10.3390/brainsci13060951 [paper, data]

A Potential Biomarker of Brain Activity in Autism Spectrum Disorders: A Pilot fNIRS Study in Female Preschoolers.

Journal: Brain sciences

Status: data only, 1 dataset cited

[35616] doi:10.3390/ijms241210111 [paper, data]

An Exploration of the Coherent Effects between METTL3 and NDUFA10 on Alzheimer's Disease.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

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