Every paper, by date: page 161

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 161 of 200: 2 June 2023 to 25 May 2023.

Friday, 2 June 2023 (33 papers, 25 on this page)

[35841] doi:10.1038/s41598-023-34967-2 [paper, data]

Stimulus specific cortical activity associated with ignoring distraction during working memory encoding and maintenance.

Journal: Scientific reports

Status: data only, 1 dataset cited

[35842] doi:10.1038/s42003-023-04961-5 [paper, data]

Targeting the post-synaptic proteome has therapeutic potential for psychosis in Alzheimer Disease.

Journal: Communications biology

Status: data only, 1 dataset cited

[35843] doi:10.1083/jcb.202209111 [paper, repository]

Design principles for selective polarization of PAR proteins by cortical flows.

Journal: The Journal of cell biology

Authors' code: lhcgeneva/SPT (no license), goehringlab (no license)

Status: code verified, 44 files readable, 5 matches

[35844] doi:10.1111/cns.14278 [paper, data]

Single-cell RNA-sequencing analysis reveals enhanced non-canonical neurotrophic factor signaling in the subacute phase of traumatic brain injury.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[35845] doi:10.1111/cns.14280 [paper]

Comprehensive analyses of brain cell communications based on multiple scRNA-seq and snRNA-seq datasets for revealing novel mechanism in neurodegenerative diseases.

Journal: CNS neuroscience & therapeutics

Status: data only

[35846] doi:10.1111/jon.13129 [paper, repository]

Cerebral blood flow in patients recovered from mild COVID-19.

Journal: Journal of neuroimaging : official journal of the American Society of Neuroimaging

Authors' code: neurolabusc/niistat (GPL-2.0), neurolabusc/nii_preprocess (no license), nitrc.org/projects/niistat (no license)

Status: code verified, 152 files readable, 3 matches

[35847] doi:10.1126/sciadv.adg9836 [paper, data]

Widespread posttranscriptional regulation of cotransmission.

Journal: Science advances

Status: data only, 1 dataset cited

[35848] doi:10.1159/000528744 [paper, data]

Extensive, 3.8 Mb-Sized Deletion of 22q12 in a Patient with Bilateral Schwannoma, Intellectual Disability, Sensorineural Hearing Loss, and Epilepsy.

Journal: Molecular syndromology

Status: data only, 1 dataset cited

[35849] doi:10.1186/s12864-023-09408-z [paper, data]

Bioinformatics and experimental analyses of glutamate receptor and its targets genes in myocardial and cerebral ischemia.

Journal: BMC genomics

Status: data only, 2 datasets cited

[35850] doi:10.1186/s40478-023-01576-z [paper, data]

Neurodegenerative pathologies associated with behavioral and psychological symptoms of dementia in a community-based autopsy cohort.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[35851] doi:10.1242/dmm.049868 [paper, data]

Facial analytics based on a coordinate extrapolation system (zFACE) for morphometric phenotyping of developing zebrafish.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[35852] doi:10.1371/journal.pone.0286209 [paper, data]

Selective ablation of VIP interneurons in the rodent prefrontal cortex results in increased impulsivity.

Journal: PloS one

Status: data only, 2 datasets cited

[35853] doi:10.1371/journal.pone.0286632 [paper, repository]

Causal role of the dorsolateral prefrontal cortex in modulating the balance between Pavlovian and instrumental systems in the punishment domain.

Journal: PloS one

Authors' code: CCS-Lab/project_tDCS_public (no license)

Status: code verified, 7 files readable

[35854] doi:10.1523/eneuro.0033-23.2023 [paper, repository]

Brain Activation and Functional Connectivity of Reappraisal and Acceptance for Anxious Events.

Journal: eNeuro

Authors' code: OSF nyrws (no license)

Status: code found, still to be checked

[35855] doi:10.3389/fendo.2023.1145722 [paper, data]

Construction of a telomere-related gene signature to predict prognosis and immune landscape for glioma.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[35856] doi:10.3389/fnagi.2023.1161405 [paper, data]

Uncovering neuroinflammation-related modules and potential repurposing drugs for Alzheimer's disease through multi-omics data integrative analysis.

Journal: Frontiers in aging neuroscience

Status: data only, 2 datasets cited

[35857] doi:10.3389/fncir.2023.1138358 [paper, data]

Bimodal modulation of L1 interneuron activity in anterior cingulate cortex during fear conditioning.

Journal: Frontiers in neural circuits

Status: data only, 1 dataset cited

[35858] doi:10.3389/fneur.2023.1161527 [paper, data]

Impact of sex and APOE-<i>ε</i>4 genotype on patterns of regional brain atrophy in Alzheimer's disease and healthy aging.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[35859] doi:10.3389/fnhum.2023.1134599 [paper, repository]

The potential of convolutional neural networks for identifying neural states based on electrophysiological signals: experiments on synthetic and real patient data.

Journal: Frontiers in human neuroscience

Authors' code: fer-rplazas/feature-extraction-methods (CC-BY-SA-4.0), neuromodulation/py_neuromodulation (MIT)

Status: code verified, 154 files readable, 9 matches

[35860] doi:10.3389/fnins.2023.1124089 [paper, data]

Subject-independent EEG classification based on a hybrid neural network.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[35861] doi:10.3389/fnins.2023.1143422 [paper, repository]

GABNet: global attention block for retinal OCT disease classification.

Journal: Frontiers in neuroscience

Authors' code: kaggle.com/c/diabetic-retinopathy-detection (no license), YHHAZ/GABNet (no license)

Status: empty repository, 1 file readable

[35862] doi:10.3389/fnins.2023.1151309 [paper, repository]

Post-ischemic reorganization of sensory responses in cerebral cortex.

Journal: Frontiers in neuroscience

Authors' code: Cortical-Plasticity-Lab/Solenoid-Ephys-Analyses (no license)

Status: code verified, 155 files readable, 8 matches

[35863] doi:10.3389/fnins.2023.1172830 [paper, repository]

Evaluation of kernel low-rank compressed sensing in preclinical diffusion magnetic resonance imaging.

Journal: Frontiers in neuroscience

Authors' code: nifm-gin/compressedSensing (no license)

Status: code verified, 111 files readable, 6 matches

[35864] doi:10.3389/fnins.2023.1174165 [paper, data]

Arcuate fasciculus and pre-reading language development in children with prenatal alcohol exposure.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[35865] doi:10.3390/brainsci13060904 [paper, data]

Short-Term Effects of Competitive Video Games on Aggression: An Event-Related Potential Study.

Journal: Brain sciences

Status: data only, 1 dataset cited

Thursday, 1 June 2023 (61 papers)

[35866] doi:10.1001/jamanetworkopen.2023.19420 [paper, data]

Development of a Deep Learning Model for Retinal Hemorrhage Detection on Head Computed Tomography in Young Children.

Journal: JAMA network open

Status: data only, 1 dataset cited

[35867] doi:10.1016/j.celrep.2023.112563 [paper, repository]

Scanning mutagenesis of the voltage-gated sodium channel Na_V1.2 using base editing.

Journal: Cell reports

Authors' code: Zenodo 7901798 (other-open), broadinstitute/scn2a_base_editing (no license)

Status: code verified, 8 files readable, 1 match

[35868] doi:10.1016/j.heliyon.2023.e16905 [paper, data]

M6A modification promotes blood-brain barrier breakdown during cerebral ischemia/reperfusion injury through increasing matrix metalloproteinase 3 expression.

Journal: Heliyon

Status: data only, 1 dataset cited

[35869] doi:10.1038/s41593-023-01324-5 [paper, repository]

Augmenting hippocampal-prefrontal neuronal synchrony during sleep enhances memory consolidation in humans.

Journal: Nature neuroscience

Authors' code: mgevasagiv/sleepScoringIEEG (no license), mgevasagiv/rippleDetection_IEEG (no license), mgevasagiv/epilepticActivity_IEEG (no license), mgevasagiv/sleepOscillations_IEEG (no license)

Status: code verified, 20 files readable, 7 matches

[35870] doi:10.1038/s42003-023-04953-5 [paper, repository]

Sulcal morphology of posteromedial cortex substantially differs between humans and chimpanzees.

Journal: Communications biology

Authors' code: cnl-berkeley/stable_projects (no license), Zenodo 7938953 (CC-BY-4.0)

Status: code verified, 133 files readable, 13 matches

[35871] doi:10.1093/bioinformatics/btad249 [paper, repository]

PPAD: a deep learning architecture to predict progression of Alzheimer's disease.

Journal: Bioinformatics (Oxford, England)

Authors' code: bozdaglab/PPAD (CC-BY-NC-4.0)

Status: code verified, 5 files readable, 6 matches

[35872] doi:10.1093/brain/awac422 [paper, repository]

Pre-ataxic loss of intrinsic plasticity and motor learning in a mouse model of SCA1.

Journal: Brain : a journal of neurology

Authors' code: MSchonewille/iMove (no license)

Status: code verified, 9 files readable, 1 match

[35873] doi:10.1093/brain/awac471 [paper, repository]

Neurophysiological consequences of synapse loss in progressive supranuclear palsy.

Journal: Brain : a journal of neurology

Authors' code: AlistairPerry/FTLDMEGMEM (no license), tallie/edcm (no license)

Status: code verified, 41 files readable, 8 matches

[35874] doi:10.1093/brain/awad008 [paper, data]

Neuropsychiatric disorders following SARS-CoV-2 infection.

Journal: Brain : a journal of neurology

Status: data only, 4 datasets cited

[35875] doi:10.1093/brain/awad085 [paper, repository]

Thalamostriatal disconnection underpins long-term seizure freedom in frontal lobe epilepsy surgery.

Journal: Brain : a journal of neurology

Authors' code: lassoan/SlicerElastix (MIT)

Status: code verified, 12 files readable

[35876] doi:10.1093/cercor/bhad045 [paper, repository]

Coherent mapping of position and head direction across auditory and visual cortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 1313201 (other-open), mwaskom/seaborn (BSD-3-Clause)

Status: code verified, 337 files readable

[35877] doi:10.1093/cercor/bhad054 [paper, repository]

Investigating predictive coding in younger and older children using MEG and a multi-feature auditory oddball paradigm.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF 35q8n (no license), Zenodo 1451031 (other-open)

Status: code verified, 16 files readable, 3 matches

[35878] doi:10.1093/cercor/bhad075 [paper]

Altered structural connectome of children with auditory processing disorder: a diffusion MRI study.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[35879] doi:10.1093/cercor/bhad079 [paper, repository]

Modality-specific and modality-independent neural representations work in concert in predictive processes during sequence learning.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF 5s34c (no license)

Status: code verified, 2 files readable

[35880] doi:10.1093/cercor/bhad090 [paper]

Brightness illusions evoke pupil constriction preceded by a primary visual cortex response in rats.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[35881] doi:10.1093/cercor/bhad093 [paper]

Brain networks subserving functional core processes of emotions identified with componential modeling.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[35882] doi:10.1093/cercor/bhad106 [paper, repository]

Individual differences in neural event segmentation of continuous experiences.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: thefinnlab/individual_event_seg (no license)

Status: code verified, 32 files readable, 8 matches

[35883] doi:10.1093/cercor/bhad132 [paper]

Why people engage in corrupt collaboration: an observation at the multi-brain level.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[35884] doi:10.1093/cercor/bhad136 [paper, repository]

Distributed and hierarchical neural encoding of multidimensional biological motion attributes in the human brain.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: ir.psych.ac.cn/handle/311026 (no license)

Status: code verified

[35885] doi:10.1093/cercor/bhad142 [paper, repository]

Multi-scale systems genomics analysis predicts pathways, cell types, and drug targets involved in normative variation in peri-adolescent human cognition.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: BaderLab/PNC_GeneticsofCognition (no license)

Status: dead link

[35886] doi:10.1093/cercor/bhad150 [paper, repository]

Dynamic signatures of the Eureka effect: an EEG study.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: y-q-l/Mooney_EEG (no license)

Status: code verified, 10 files readable, 4 matches

[35887] doi:10.1093/cercor/bhad151 [paper, repository]

Imaging the columnar functional organization of human area MT+ to axis-of-motion stimuli using VASO at 7 Tesla.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: 27-apizzuti/aom-vaso_project (no license)

Status: code verified, 217 files readable, 17 matches

[35888] doi:10.1093/cercor/bhad162 [paper, repository]

Hippocampal theta activity during encoding promotes subsequent associative memory in humans.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF 5afsb (no license)

Status: code verified, 10 files readable, 1 match

[35889] doi:10.1093/g3journal/jkad072 [paper, repository]

Social experience and pheromone receptor activity reprogram gene expression in sensory neurons.

Journal: G3 (Bethesda, Md.)

Authors' code: csoeder/volkanlab_behaviorgenetics (no license)

Status: code verified, 25 files readable, 2 matches

[35890] doi:10.1093/hmg/ddad048 [paper, repository]

Pathogenic SCN2A variants cause early-stage dysfunction in patient-derived neurons.

Journal: Human molecular genetics

Authors' code: delvendahl/SCN2A_simulations (MIT)

Status: code verified, 35 files readable

[35891] doi:10.1093/ijnp/pyad023 [paper, repository]

Chronic 3,4-Methylenedioxymethamphetamine (MDMA) Use Is Related to Glutamate and GABA Concentrations in the Striatum But Not the Anterior Cingulate Cortex.

Journal: The international journal of neuropsychopharmacology

Authors' code: jziNeuro/MRS_MDMA_publication (no license)

Status: code verified, 3 files readable, 4 matches

[35892] doi:10.1093/ijnp/pyad024 [paper]

Key Risk Genes Identified From the Postmortem Brain of Patients With Major Depressive Disorder and Their Potential Clinical Applications.

Journal: The international journal of neuropsychopharmacology

Status: data only

[35893] doi:10.1093/nar/gkad231 [paper]

Dual functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation.

Journal: Nucleic acids research

Status: data only

[35894] doi:10.1093/scan/nsad022 [paper, data]

Affective evaluation of errors and neural error processing in obsessive-compulsive disorder.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[35895] doi:10.1093/scan/nsad023 [paper, repository]

Mentalizing in an economic games context is associated with enhanced activation and connectivity in the left temporoparietal junction.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 3eg56 (no license)

Status: code verified

[35896] doi:10.1093/scan/nsad028 [paper]

Default egocentrism: an MVPA approach to overlap in own and others' socio-political attitudes.

Journal: Social cognitive and affective neuroscience

Status: code on request

[35897] doi:10.1093/scan/nsad030 [paper, data]

Close to me but unreachable: spotting the link between peripersonal space and empathy.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[35898] doi:10.1093/scan/nsad033 [paper, repository]

You are fired! Exclusion words induce corticospinal modulations associated with vicarious pain.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF xs93f (no license)

Status: code verified, 1 file readable, 3 matches

[35899] doi:10.1093/stmcls/sxad028 [paper, data]

Neuroprotective Effects of Genome-Edited Human iPS Cell-Derived Neural Stem/Progenitor Cells on Traumatic Brain Injury.

Journal: Stem cells (Dayton, Ohio)

Status: data only, 1 dataset cited

[35900] doi:10.1093/sysbio/syac075 [paper, repository]

Both Diet and Sociality Affect Primate Brain-Size Evolution.

Journal: Systematic biology

Authors' code: mark-grabowski/brain_ms (MIT)

Status: code verified, 35 files readable, 3 matches

[35901] doi:10.1093/toxsci/kfad049 [paper, data]

Use of the dTAG system in vivo to degrade CDK2 and CDK5 in adult mice and explore potential safety liabilities.

Journal: Toxicological sciences : an official journal of the Society of Toxicology

Status: data only, 1 dataset cited

[35902] doi:10.1109/tmi.2022.3231730 [paper, repository]

A Skewed Loss Function for Correcting Predictive Bias in Brain Age Prediction.

Journal: IEEE transactions on medical imaging

Authors' code: ageitgey/face_recognition (MIT)

Status: code verified, 34 files readable

[35903] doi:10.1111/jcpe.13828 [paper, repository]

Association between periodontal disease and microstructural brain alterations in the Hamburg City Health Study.

Journal: Journal of clinical periodontology

Authors' code: csi-hamburg/csiframe (MIT)

Status: code verified, 80 files readable

[35904] doi:10.1126/sciadv.adc9507 [paper, data]

Lineage-specific accelerated sequences underlying primate evolution.

Journal: Science advances

Status: data only, 1 dataset cited

[35905] doi:10.1155/2023/9995292 [paper, data]

IoMT Meets Machine Learning: From Edge to Cloud Chronic Diseases Diagnosis System.

Journal: Journal of healthcare engineering

Status: data only, 2 datasets cited

[35906] doi:10.1159/000530269 [paper, data]

The Role of Intermittent Fasting and Dieting on Cognition in Adult Population: A Systematic Review of the Randomized Controlled Trials.

Journal: Medical principles and practice : international journal of the Kuwait University, Health Science Centre

Status: data only, 1 dataset cited

[35907] doi:10.1172/jci164472 [paper, data]

Silencing miR-21-5p in sensory neurons reverses neuropathic allodynia via activation of TGF-β-related pathway in macrophages.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[35908] doi:10.1186/s12868-023-00800-9 [paper, repository]

The glycine receptor alpha 3 subunit mRNA expression shows sex-dependent differences in the adult mouse brain.

Journal: BMC neuroscience

Authors' code: HannahMWeman/glra3-expression-analysis-in-the-nervous-system (no license)

Status: code verified, 2 files readable, 3 matches

[35909] doi:10.1186/s13229-023-00550-9 [paper, data]

SETD5 haploinsufficiency affects mitochondrial compartment in neural cells.

Journal: Molecular autism

Status: data only, 1 dataset cited

[35910] doi:10.1210/endocr/bqad109 [paper, repository]

Vasopressin Expressed in Hypothalamic CRF Neurons Causes Impaired Water Diuresis in Secondary Adrenal Insufficiency.

Journal: Endocrinology

Authors' code: figshare 23504412 (CC-BY-4.0)

Status: empty repository

[35911] doi:10.1371/journal.pbio.3002140 [paper, repository]

Dynamic modulation of subthalamic nucleus activity facilitates adaptive behavior.

Journal: PLoS biology

Authors' code: data.mrc.ox.ac.uk (no license), data.mrc.ox.ac.uk/data-set/subthalamic-nucleus-correlates-force-adaptation (no license)

Status: code verified

[35912] doi:10.1538/expanim.23-0019 [paper, data]

Phosphoglycerate kinase (PGK) 1 succinylation modulates epileptic seizures and the blood-brain barrier.

Journal: Experimental animals

Status: data only, 1 dataset cited

[35913] doi:10.31557/apjcp.2023.24.6.2141 [paper, data]

Brain Tumor Classification based on Improved Stacked Ensemble Deep Learning Methods.

Journal: Asian Pacific journal of cancer prevention : APJCP

Status: data only, 1 dataset cited

[35914] doi:10.3389/fmolb.2023.1148501 [paper, repository]

Q1291H-CFTR molecular dynamics simulations and <i>ex vivo</i> theratyping in nasal epithelial models and clinical response to elexacaftor/tezacaftor/ivacaftor in a Q1291H/F508del patient.

Journal: Frontiers in molecular biosciences

Authors' code: miro-astore/gromacs_scripts (MIT)

Status: code verified, 24 files readable

[35915] doi:10.3389/fnbeh.2023.1151877 [paper, repository]

Behavioral pattern separation and cognitive flexibility are enhanced in a mouse model of increased lateral entorhinal cortex-dentate gyrus circuit activity.

Journal: Frontiers in behavioral neuroscience

Authors' code: EischLab/ts-data-analysis-app (MIT)

Status: code verified, 10 files readable, 6 matches

[35916] doi:10.3389/fnhum.2023.1147515 [paper, data]

Examining the relation between oral contraceptive use and attentional engagement in everyday life.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[35917] doi:10.3389/fnhum.2023.1202103 [paper, repository]

Multivariate prediction of long COVID headache in adolescents using gray matter structural MRI features.

Journal: Frontiers in human neuroscience

Authors' code: raamana/graynet (MIT)

Status: code verified, 37 files readable

[35918] doi:10.3389/fphys.2023.1165379 [paper]

PRDM16 regulates arterial development and vascular integrity.

Journal: Frontiers in physiology

Status: data only

[35919] doi:10.3389/fpsyg.2023.1141801 [paper, data]

Multi-Input CNN-LSTM deep learning model for fear level classification based on EEG and peripheral physiological signals.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[35920] doi:10.3748/wjg.v29.i22.3440 [paper]

Study of the roles of caspase-3 and nuclear factor kappa B in myenteric neurons in a P2X7 receptor knockout mouse model of ulcerative colitis.

Journal: World journal of gastroenterology

Status: code on request

[35921] doi:10.3748/wjg.v29.i24.3855 [paper]

Comparison and development of machine learning for thalidomide-induced peripheral neuropathy prediction of refractory Crohn's disease in Chinese population.

Journal: World journal of gastroenterology

Status: code on request

[35922] doi:10.4103/1673-5374.358621 [paper, data]

Neural regeneration research model to be explored: SH-SY5Y human neuroblastoma cells.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[35923] doi:10.5607/en23001 [paper, repository]

An Automated Cell Detection Method for TH-positive Dopaminergic Neurons in a Mouse Model of Parkinson's Disease Using Convolutional Neural Networks.

Journal: Experimental neurobiology

Authors' code: OSF js8nd (no license), KHUSKlab/pd_mouse_cell_detection (no license)

Status: code verified, 9 files readable

[35924] doi:10.5607/en23016 [paper, repository]

Machine Learning-assisted Quantitative Mapping of Intracortical Axonal Plasticity Following a Focal Cortical Stroke in Rodents.

Journal: Experimental neurobiology

Authors' code: Yaoyao-Hao/BrainMesh (GPL-3.0)

Status: code verified, 6 files readable

[35925] doi:10.7554/elife.82426 [paper, repository]

Flexible control of representational dynamics in a disinhibition-based model of decision-making.

Journal: eLife

Authors' code: OSF ygr57 (no license)

Status: code verified, 64 files readable, 6 matches

[35926] doi:10.7554/elife.84693 [paper, repository]

Instantaneous antidepressant effect of lateral habenula deep brain stimulation in rats studied with functional MRI.

Journal: eLife

Authors' code: OSF 48f5m (no license)

Status: code verified, 4 files readable, 1 match

Wednesday, 31 May 2023 (28 papers)

[35927] doi:10.1002/cncr.34888 [paper, data]

Proteome profiling of salivary small extracellular vesicles in glioblastoma patients.

Journal: Cancer

Status: data only, 2 datasets cited

[35928] doi:10.1002/hbm.26386 [paper, repository]

Whole-brain analyses indicate the impairment of posterior integration and thalamo-frontotemporal broadcasting in disorders of consciousness.

Journal: Human brain mapping

Authors' code: RajanikantPanda/Ignition_and_Information_flow_for_DOC (no license)

Status: code verified, 4 files readable, 1 match

[35929] doi:10.1007/s11571-023-09977-5 [paper, repository]

Invariants for neural automata.

Journal: Cognitive neurodynamics

Authors' code: TuringMachinegun/Turing_Neural_Networks (MIT)

Status: code verified, 18 files readable, 1 match

[35930] doi:10.1016/j.crneur.2023.100091 [paper, data]

Efficient viral expression of a chemogenetic receptor in the old-world monkey amygdala.

Journal: Current research in neurobiology

Status: data only, 1 dataset cited

[35931] doi:10.1016/j.xcrm.2023.101057 [paper, repository]

Integrated spatial transcriptome and metabolism study reveals metabolic heterogeneity in human injured brain.

Journal: Cell reports. Medicine

Authors' code: SpatialTranscriptomicsResearch/st_pipeline (MIT), SpatialTranscriptomicsResearch/st_spot_detector (MIT)

Status: code verified, 90 files readable, 1 match

[35932] doi:10.1016/j.xcrm.2023.101060 [paper, repository]

Orbitofrontal cortex-hippocampus potentiation mediates relief for depression: A randomized double-blind trial and TMS-EEG study.

Journal: Cell reports. Medicine

Authors' code: SizhuHan/TMS-EEG-processing (GPL-3.0)

Status: code verified, 8 files readable, 9 matches

[35933] doi:10.1016/j.xgen.2023.100340 [paper, repository]

OpenPBTA: The Open Pediatric Brain Tumor Atlas.

Journal: Cell genomics

Authors' code: AlexsLemonade/OpenPBTA-analysis (CC-BY-4.0), AlexsLemonade/OpenPBTA-manuscript (CC-BY-4.0), PediatricOpenTargets/OpenPedCan-analysis (CC0-1.0), Zenodo 7877755 (other-open), Zenodo 7877739 (CC-BY-4.0), Zenodo 6968175 (other-open), cavatica.sbgenomics.com/u/cavatica (no license)

Status: code verified, 722 files readable, 40 matches

[35934] doi:10.1038/s41467-023-38709-w [paper, repository]

Task state representations in vmPFC mediate relevant and irrelevant value signals and their behavioral influence.

Journal: Nature communications

Authors' code: translationalneuromodeling.org/tapas (no license), fmriprep.readthedocs.io (no license), sjgershm/ccnl-fmri (no license), git.mpib-berlin.mpg.de/moneta/parallelrepresentation (no license)

Status: code verified, 44 files readable, 8 matches

[35935] doi:10.1038/s41531-023-00527-8 [paper, data]

Identification of PLOD3 and LRRN3 as potential biomarkers for Parkinson's disease based on integrative analysis.

Journal: NPJ Parkinson's disease

Status: code on request, 1 dataset cited

[35936] doi:10.1038/s41586-023-06098-1 [paper, repository]

Geometric constraints on human brain function.

Journal: Nature

Authors' code: NSBLab/BrainEigenmodes (Apache-2.0)

Status: code verified, 297 files readable, 22 matches

[35937] doi:10.1038/s41586-023-06120-6 [paper, repository]

Myelin dysfunction drives amyloid-β deposition in models of Alzheimer's disease.

Journal: Nature

Authors' code: TSun-tech/AD_MyelinMutant (no license)

Status: code verified, 17 files readable, 13 matches

[35938] doi:10.1038/s41598-023-35808-y [paper, repository]

Effects of acute psychosocial stress on source level EEG power and functional connectivity measures.

Journal: Scientific reports

Authors' code: OSF tywxp (no license), OSF u8zyv (no license), OSF vgz3x (no license), OSF 389r4 (no license), OSF 5qew6 (no license), dx2r/PhD_EEG_Pipeline (no license)

Status: code verified, 64 files readable, 12 matches

[35939] doi:10.1038/s42003-023-04952-6 [paper, repository]

Individual-specific functional connectivity improves prediction of Alzheimer's disease's symptoms in elderly people regardless of APOE ε4 genotype.

Journal: Communications biology

Authors' code: LinHuaUM/IndivCode (no license)

Status: code verified, 4 files readable, 2 matches

[35940] doi:10.1038/s42003-023-04958-0 [paper]

Rat hippocampal CA1 region represents learning-related action and reward events with shorter latency than the lateral entorhinal cortex.

Journal: Communications biology

Status: code on request

[35941] doi:10.1098/rsos.221239 [paper, repository]

Walk the plank! Using mobile electroencephalography to investigate emotional lateralization of immersive fear in virtual reality.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6662629 (no license)

Status: code found, still to be checked

[35942] doi:10.1126/sciadv.adf4950 [paper, repository]

An AAV-CRISPR/Cas9 strategy for gene editing across divergent rodent species: Targeting neural oxytocin receptors as a proof of concept.

Journal: Science advances

Authors' code: doi:10.5061/dryad.9zw3r22jn (no license), Zenodo 7706422 (MIT)

Status: code verified, 1 file readable, 2 matches

[35943] doi:10.1126/sciadv.adg4881 [paper, data]

Fear extinction relies on ventral hippocampal safety codes shaped by the amygdala.

Journal: Science advances

Status: data only, 1 dataset cited

[35944] doi:10.1186/s12974-023-02774-1 [paper, data]

Minocycline protects against microgliopathy in a Csf1r haplo-insufficient mouse model of adult-onset leukoencephalopathy with axonal spheroids and pigmented glia (ALSP).

Journal: Journal of neuroinflammation

Status: data only, 3 datasets cited

[35945] doi:10.1371/journal.pntd.0011350 [paper, data]

Dimethyl itaconate ameliorates the deficits of goal-directed behavior in Toxoplasma gondii infected mice.

Journal: PLoS neglected tropical diseases

Status: data only, 1 dataset cited

[35946] doi:10.15252/embj.2022112987 [paper, data]

Nucleoporin foci are stress-sensitive condensates dispensable for C. elegans nuclear pore assembly.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[35947] doi:10.3389/fnana.2023.1097247 [paper, data]

Topological arrangement of coronal segments in human callosal fibers <i>in vivo</i> tractography.

Journal: Frontiers in neuroanatomy

Status: data only, 1 dataset cited

[35948] doi:10.3389/fnetp.2023.1085347 [paper, repository]

Information theoretic measures of causal influences during transient neural events.

Journal: Frontiers in network physiology

Authors' code: KaidiShao/event_causality_frontiers (no license)

Status: code verified, 33 files readable, 3 matches

[35949] doi:10.3389/fnins.2023.1205928 [paper, repository]

Editorial: Demonstrating quality control (QC) procedures in fMRI.

Journal: Frontiers in neuroscience

Authors' code: OSF qaesm (no license)

Status: code verified

[35950] doi:10.3390/cancers15113010 [paper, repository]

The Association of Gross Tumor Volume and Its Radiomics Features with Brain Metastases Development in Patients with Radically Treated Stage III Non-Small Cell Lung Cancer.

Journal: Cancers

Authors' code: Maastro-CDS-Imaging-Group/GTVNSCLC (no license)

Status: code verified, 5 files readable

[35951] doi:10.3390/diagnostics13111924 [paper, data]

Automatic and Early Detection of Parkinson's Disease by Analyzing Acoustic Signals Using Classification Algorithms Based on Recursive Feature Elimination Method.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[35952] doi:10.3390/jcm12113771 [paper, repository]

Assessment of Self-Reported Executive Function in Patients with Irritable Bowel Syndrome Using a Machine-Learning Framework.

Journal: Journal of clinical medicine

Authors' code: ydataai/ydata-profiling (MIT), AutoViML/AutoViz (Apache-2.0)

Status: code verified, 317 files readable, 2 matches

[35953] doi:10.3390/v15061298 [paper, data]

ERVW-1 Activates ATF6-Mediated Unfolded Protein Response by Decreasing GANAB in Recent-Onset Schizophrenia.

Journal: Viruses

Status: data only, 1 dataset cited

[35954] doi:10.7554/elife.81499 [paper, repository]

Contrasting action and posture coding with hierarchical deep neural network models of proprioception.

Journal: eLife

Authors' code: amathislab/DeepDraw (MIT)

Status: code verified, 66 files readable, 24 matches

Tuesday, 30 May 2023 (29 papers)

[35955] doi:10.1007/s10548-023-00971-y [paper]

Frequency Analysis of EEG Microstate Sequences in Wakefulness and NREM Sleep.

Journal: Brain topography

Status: code on request

[35956] doi:10.1007/s11011-023-01234-2 [paper, data]

Novel sights on therapeutic, prognostic, and diagnostics aspects of non-coding RNAs in glioblastoma multiforme.

Journal: Metabolic brain disease

Status: data only, 14 datasets cited

[35957] doi:10.1016/j.isci.2023.106995 [paper, repository]

Robust induction of functional astrocytes using NGN2 expression in human pluripotent stem cells.

Journal: iScience

Authors' code: lbinan/astrocyteInduction (no license)

Status: code verified, 6 files readable, 2 matches

[35958] doi:10.1038/s41467-023-38480-y [paper, data]

The contributions of mitochondrial and nuclear mitochondrial genetic variation to neuroticism.

Journal: Nature communications

Status: data only, 2 datasets cited

[35959] doi:10.1038/s41467-023-38854-2 [paper, repository]

Afferent convergence to a shared population of interneuron AMPA receptors.

Journal: Nature communications

Authors' code: rpennock/Spill-in-Manuscript-MATLAB (no license)

Status: code verified, 7 files readable, 4 matches

[35960] doi:10.1038/s43856-023-00305-w [paper]

Rapid digital pathology of H&E-stained fresh human brain specimens as an alternative to frozen biopsy.

Journal: Communications medicine

Status: code on request

[35961] doi:10.1073/pnas.2212394120 [paper, repository]

Principles of nociceptive coding in the anterior cingulate cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: nevian_group_unibe/ca_imaging_data_analysis (no license)

Status: code verified, 2,000 files readable, 2 matches

[35962] doi:10.1073/pnas.2216932120 [paper, repository]

Dietary flavanols restore hippocampal-dependent memory in older adults with lower diet quality and lower habitual flavanol consumption.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.5061/dryad.m905qfv69 (no license), Zenodo 7922492 (MIT)

Status: code verified, 9 files readable, 4 matches

[35963] doi:10.1073/pnas.2219310120 [paper, repository]

Neural representations of the content and production of human vocalization.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 5c43h (no license)

Status: code verified, 16 files readable, 2 matches

[35964] doi:10.1073/pnas.2300722120 [paper, data]

Sex-specific and opposed effects of FKBP51 in glutamatergic and GABAergic neurons: Implications for stress susceptibility and resilience.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[35965] doi:10.1093/braincomms/fcad172 [paper, repository]

Large-scale activation likelihood estimation meta-analysis of parkinsonian disorders.

Journal: Brain communications

Authors' code: brainmap.org (no license)

Status: code verified

[35966] doi:10.1101/2023.05.29.542742 [paper, data]

Study design features increase replicability in cross-sectional and longitudinal brain-wide association studies

Journal: bioRxiv (preprint)

Status: data only, 5 datasets cited

[35967] doi:10.1186/s12915-023-01592-4 [paper, data]

Omission responses in local field potentials in rat auditory cortex.

Journal: BMC biology

Status: data only, 1 dataset cited

[35968] doi:10.1186/s12974-023-02809-7 [paper, data]

Analysis of the microglia transcriptome across the human lifespan using single cell RNA sequencing.

Journal: Journal of neuroinflammation

Status: data only, 4 datasets cited

[35969] doi:10.1186/s13059-023-02959-0 [paper, repository]

Inferring cell-type-specific causal gene regulatory networks during human neurogenesis.

Journal: Genome biology

Authors' code: steinlabunc/pathqtl (no license), Zenodo 7819209 (CC-BY-4.0)

Status: code verified, 114 files readable, 11 matches

[35970] doi:10.1371/journal.pone.0286344 [paper, data]

Retinal transcriptome of neonatal mice after optic nerve injury.

Journal: PloS one

Status: data only, 1 dataset cited

[35971] doi:10.15252/embj.2022113168 [paper, data]

HNRNPH1 regulates the neuroprotective cold-shock protein RBM3 expression through poison exon exclusion.

Journal: The EMBO journal

Status: data only, 2 datasets cited

[35972] doi:10.3389/fncel.2023.1146647 [paper, data]

Investigating cell-specific effects of FMRP deficiency on spiny projection neurons in a mouse model of Fragile X syndrome.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[35973] doi:10.3389/fnhum.2023.1182319 [paper, repository]

Mind wandering state detection during video-based learning via EEG.

Journal: Frontiers in human neuroscience

Authors' code: OSF 7mj5e (no license)

Status: code verified

[35974] doi:10.3389/fpain.2023.1183553 [paper, data]

Developing a 3-D computational model of neurons in the central amygdala to understand pharmacological targets for pain.

Journal: Frontiers in pain research (Lausanne, Switzerland)

Status: data only, 1 dataset cited

[35975] doi:10.3389/fphys.2023.1196919 [paper, repository]

A regression method for EEG-based cross-dataset fatigue detection.

Journal: Frontiers in physiology

Authors' code: yangyangyang-github/RMCDFD (no license)

Status: code verified, 12 files readable, 2 matches

[35976] doi:10.3390/cells12111517 [paper, data]

Hepatic Oxi-Inflammation and Neophobia as Potential Liver-Brain Axis Targets for Alzheimer's Disease and Aging, with Strong Sensitivity to Sex, Isolation, and Obesity.

Journal: Cells

Status: data only, 9 datasets cited

[35977] doi:10.3390/ijms24119496 [paper, data]

Gut Microbiota and Brain Alterations after Refeeding in a Translational Anorexia Nervosa Rat Model.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[35978] doi:10.3390/jox13020018 [paper, data]

Transcriptional Alterations Induced by Delta-9 Tetrahydrocannabinol in the Brain and Gonads of Adult Medaka.

Journal: Journal of xenobiotics

Status: data only, 1 dataset cited

[35979] doi:10.7554/elife.77262 [paper, data]

Self-organization of songbird neural sequences during social isolation.

Journal: eLife

Status: data only, 1 dataset cited

[35980] doi:10.7554/elife.81863 [paper, repository]

Target cell-specific synaptic dynamics of excitatory to inhibitory neuron connections in supragranular layers of human neocortex.

Journal: eLife

Authors' code: AllenInstitute/MIES (BSD-2-Clause), AllenInstitute/ipfx (BSD-2-Clause), Zenodo 8122646 (MIT), Zenodo 8122647 (MIT)

Status: code verified, 197 files readable, 4 matches

[35981] doi:10.7554/elife.84135 [paper, repository]

Concurrent decoding of distinct neurophysiological fingerprints of tremor and bradykinesia in Parkinson's disease.

Journal: eLife

Authors' code: doi:10.5061/dryad.h9w0vt4n4 (no license)

Status: dead link

[35982] doi:10.7554/elife.84911 [paper, repository]

Increased cortical plasticity leads to memory interference and enhanced hippocampal-cortical interactions.

Journal: eLife

Authors' code: MehdiKhamassi/ObjectSpaceExplorationModel (BSD-2-Clause), genzellab/rgs14 (GPL-3.0)

Status: code verified, 67 files readable, 13 matches

[35983] doi:10.7554/elife.85443 [paper, repository]

Chronic exposure to odors at naturally occurring concentrations triggers limited plasticity in early stages of <i>Drosophila</i> olfactory processing.

Journal: eLife

Authors' code: doi:10.5061/dryad.v15dv420q (no license), Zenodo 7946799 (MIT)

Status: code verified, 1 file readable

Monday, 29 May 2023 (29 papers)

[35984] doi:10.1002/hbm.26387 [paper, data]

The neural signature of reality-monitoring: A meta-analysis of functional neuroimaging studies.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[35985] doi:10.1007/s11548-023-02965-4 [paper, repository]

Automated screening of computed tomography using weakly supervised anomaly detection.

Journal: International journal of computer assisted radiology and surgery

Authors' code: hibiat/wsad (no license)

Status: code verified, 21 files readable, 2 matches

[35986] doi:10.1007/s12035-023-03382-z [paper, data]

Identifying Novel Drug Targets for Epilepsy Through a Brain Transcriptome-Wide Association Study and Protein-Wide Association Study with Chemical-Gene-Interaction Analysis.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[35987] doi:10.1016/j.ejro.2023.100491 [paper, repository]

Automatic localisation and per-region quantification of traumatic brain injury on head CT using atlas mapping.

Journal: European journal of radiology open

Authors' code: biomedia-mira/blast-ct (Apache-2.0)

Status: code verified, 27 files readable, 2 matches

[35988] doi:10.1016/j.isci.2023.106931 [paper]

Memory rescue and learning in synaptic impaired neuronal circuits.

Journal: iScience

Status: code on request

[35989] doi:10.1016/j.isci.2023.106993 [paper, repository]

Convergence of location, direction, and theta in the rat anteroventral thalamic nucleus.

Journal: iScience

Authors' code: sardid/waveformAnalysis (no license)

Status: code verified, 14 files readable, 3 matches

[35990] doi:10.1016/j.isci.2023.106996 [paper, data]

Acute exposure to artificial light at night alters hippocampal vascular structure in mice.

Journal: iScience

Status: data only, 2 datasets cited

[35991] doi:10.1016/j.isci.2023.106997 [paper, data]

A <i>Drosophila</i> model of diabetic neuropathy reveals a role of proteasome activity in the glia.

Journal: iScience

Status: code on request, 1 dataset cited

[35992] doi:10.1016/j.nbas.2023.100076 [paper, repository]

Longitudinal grip strength is associated with susceptibility to the Sound Induced Flash Illusion in older adults.

Journal: Aging brain

Authors' code: OSF n3hdq (no license)

Status: code verified, 1 file readable, 4 matches

[35993] doi:10.1016/j.nbd.2023.106171 [paper, data]

Social and non-social working memory in neurodegeneration.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[35994] doi:10.1038/s41467-023-38618-y [paper, data]

Dax1 modulates ERα-dependent hypothalamic estrogen sensing in female mice.

Journal: Nature communications

Status: data only, 2 datasets cited

[35995] doi:10.1038/s41467-023-38755-4 [paper, data]

LC3-associated phagocytosis promotes glial degradation of axon debris after injury in Drosophila models.

Journal: Nature communications

Status: data only, 1 dataset cited

[35996] doi:10.1038/s41467-023-38899-3 [paper, data]

Natural killer cells and innate lymphoid cells 1 tune anxiety-like behavior and memory in mice via interferon-γ and acetylcholine.

Journal: Nature communications

Status: data only, 1 dataset cited

[35997] doi:10.1038/s41467-023-38961-0 [paper, data]

Sensory ataxia and cardiac hypertrophy caused by neurovascular oxidative stress in chemogenetic transgenic mouse lines.

Journal: Nature communications

Status: data only, 2 datasets cited

[35998] doi:10.1038/s41539-023-00166-x [paper, repository]

The effect of prediction error on episodic memory encoding is modulated by the outcome of the predictions.

Journal: NPJ science of learning

Authors' code: ortiztud/premup (no license), OSF 97pu8 (no license)

Status: code verified, 65 files readable, 9 matches

[35999] doi:10.1038/s41593-023-01331-6 [paper, repository]

The human brain reactivates context-specific past information at event boundaries of naturalistic experiences.

Journal: Nature neuroscience

Authors' code: OSF crmdb (no license)

Status: code verified, 15 files readable, 9 matches

[36000] doi:10.1038/s41593-023-01341-4 [paper, data]

Seeding the aggregation of TDP-43 requires post-fibrillization proteolytic cleavage.

Journal: Nature neuroscience

Status: data only, 3 datasets cited

[36001] doi:10.1038/s41593-023-01345-0 [paper, repository]

Postsynaptic synucleins mediate endocannabinoid signaling.

Journal: Nature neuroscience

Authors' code: Zenodo 7761178 (CC-BY-4.0)

Status: code verified, 11 files readable, 4 matches

[36002] doi:10.1038/s42003-023-04896-x [paper, repository]

High-resolution structural and functional retinal imaging in the awake behaving mouse.

Journal: Communications biology

Authors' code: GP-Feng/Awake_Mouse_Imaging_CommBio (no license)

Status: code verified, 27 files readable, 2 matches

[36003] doi:10.1038/s43018-023-00563-6 [paper, data]

Limiting mitochondrial plasticity by targeting DRP1 induces metabolic reprogramming and reduces breast cancer brain metastases.

Journal: Nature cancer

Status: data only, 1 dataset cited

[36004] doi:10.1038/s43587-023-00424-y [paper, repository]

Human microglia show unique transcriptional changes in Alzheimer's disease.

Journal: Nature aging

Authors' code: keprater/jayadevlab_pu.1_project (no license), hub.docker.com/r/keprater (no license)

Status: code verified, 41 files readable, 8 matches

[36005] doi:10.1109/jtehm.2023.3280974 [paper, repository]

Complex Brain-Heart Mapping in Mental and Physical Stress.

Journal: IEEE journal of translational engineering in health and medicine

Authors' code: it.mathworks.com/matlabcentral/fileexchange (no license)

Status: code found, still to be checked

[36006] doi:10.1111/cns.14259 [paper, repository]

Gm527 deficiency in dentate gyrus improves memory through upregulating dopamine D1 receptor pathway.

Journal: CNS neuroscience & therapeutics

Authors' code: GradinaruLab/HCRprobe (no license)

Status: code verified, 4 files readable, 1 match

[36007] doi:10.1155/2023/8135592 [paper, data]

Cognitive Rehabilitation: Mild Traumatic Brain Injury and Relevance of OTPF.

Journal: Occupational therapy international

Status: data only, 1 dataset cited

[36008] doi:10.1186/s12974-023-02814-w [paper, data]

Experimental hepatic encephalopathy causes early but sustained glial transcriptional changes.

Journal: Journal of neuroinflammation

Status: data only, 6 datasets cited

[36009] doi:10.31744/einstein_journal/2023ao0160 [paper, data]

Replication of Rocio virus in primary cultures of mouse neural cells.

Journal: Einstein (Sao Paulo, Brazil)

Status: data only, 1 dataset cited

[36010] doi:10.3389/fimmu.2023.1168292 [paper, data]

Blocking autofluorescence in brain tissues affected by ischemic stroke, hemorrhagic stroke, or traumatic brain injury.

Journal: Frontiers in immunology

Status: data only, 2 datasets cited

[36011] doi:10.3390/biom13060904 [paper, data]

Gasdermin D Plays an Oncogenic Role in Glioma and Correlates to an Immunosuppressive Microenvironment.

Journal: Biomolecules

Status: data only, 1 dataset cited

[36012] doi:10.3390/ijms24119439 [paper, data]

Altered Tau Kinase Activity in rTg4510 Mice after a Single Interfaced CHIMERA Traumatic Brain Injury.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Sunday, 28 May 2023 (5 papers)

[36013] doi:10.1007/s00439-023-02568-8 [paper, repository]

Integrating eQTL and GWAS data characterises established and identifies novel migraine risk loci.

Journal: Human genetics

Authors' code: drive.google.com/open (no license)

Status: code verified

[36014] doi:10.1016/j.ebiom.2023.104631 [paper, repository]

Dilated Virchow-Robin spaces are a marker for arterial disease in multiple sclerosis.

Journal: EBioMedicine

Authors' code: Ineichen-Group/EPVSinMS (no license)

Status: code verified, 2 files readable, 4 matches

[36015] doi:10.1016/j.isci.2023.106983 [paper, repository]

Dissecting molecular, pathological, and clinical features associated with tumor neural/neuroendocrine heterogeneity.

Journal: iScience

Authors' code: cailing20/NEcalc (MIT)

Status: code verified, 6 files readable

[36016] doi:10.1016/j.isci.2023.106989 [paper]

A novel co-target of ACY1 governing plasma membrane translocation of SphK1 contributes to inflammatory and neuropathic pain.

Journal: iScience

Status: code on request

[36017] doi:10.3390/ijms24119393 [paper, data]

Impact of Solute Carrier Transporters in Glioma Pathology: A Comprehensive Review.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 27 May 2023 (9 papers)

[36018] doi:10.1016/j.ynirp.2023.100169 [paper, repository]

Successful reproduction of a large EEG study across software packages.

Journal: Neuroimage. Reports

Authors' code: OSF 65x4v (no license), Inria-Empenn/EEG_preprocessing (no license), Zenodo 6918329 (other-open)

Status: code verified, 48 files readable, 9 matches

[36019] doi:10.1038/s41467-023-38667-3 [paper]

Multi-neuron connection using multi-terminal floating-gate memristor for unsupervised learning.

Journal: Nature communications

Status: code on request

[36020] doi:10.1038/s41598-023-35721-4 [paper]

The brain regulatory program predates central nervous system evolution.

Journal: Scientific reports

Status: data only

[36021] doi:10.1038/s41598-023-35801-5 [paper, repository]

A novel framework for the evaluation of coastal protection schemes through integration of numerical modelling and artificial intelligence into the Sand Engine App.

Journal: Scientific reports

Authors' code: pavitra979/SandEngine (no license)

Status: empty repository, 1 file readable

[36022] doi:10.1038/s41598-023-35809-x [paper, data]

VEGF overexpressed mesoangioblasts enhance urethral and vaginal recovery following simulated vaginal birth in rats.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36023] doi:10.1038/s42003-023-04951-7 [paper, repository]

Stimulus-independent and stimulus-dependent neural networks underpin placebo analgesia responsiveness in humans.

Journal: Communications biology

Authors' code: canlab/MediationToolbox (no license)

Status: code verified, 202 files readable

[36024] doi:10.3390/brainsci13060866 [paper]

Machine Learning-Based Classification to Disentangle EEG Responses to TMS and Auditory Input.

Journal: Brain sciences

Status: code on request

[36025] doi:10.3390/cells12111489 [paper, repository]

scViewer: An Interactive Single-Cell Gene Expression Visualization Tool.

Journal: Cells

Authors' code: arpatil01/scViewer (no license)

Status: code verified, 2,000 files readable, 1 match

[36026] doi:10.47626/1516-4446-2023-3037 [paper, repository]

A magnetic resonance imaging-based morphometric and structural covariance network study of Brazilian adolescents stratified by depression risk.

Journal: Revista brasileira de psiquiatria (Sao Paulo, Brazil : 1999)

Authors' code: WhitakerLab/scona (MIT)

Status: code verified, 39 files readable

Friday, 26 May 2023 (19 papers)

[36027] doi:10.1002/advs.202300876 [paper]

Integrative Transcriptomic Analyses of Hippocampal-Entorhinal System Subfields Identify Key Regulators in Alzheimer's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[36028] doi:10.1016/j.celrep.2023.112527 [paper, repository]

Cortex-wide neural dynamics predict behavioral states and provide a neural basis for resting-state dynamic functional connectivity.

Journal: Cell reports

Authors' code: Zenodo 7860561 (other-open), hillmanlab/shahsavarani_et_al (no license)

Status: code verified, 16 files readable, 6 matches

[36029] doi:10.1016/j.celrep.2023.112561 [paper, data]

Elevated FOXG1 in glioblastoma stem cells cooperates with Wnt/β-catenin to induce exit from quiescence.

Journal: Cell reports

Status: code on request, 1 dataset cited

[36030] doi:10.1016/j.isci.2023.106965 [paper, repository]

Diameter-dependent assessment of microvascular leakage following ultrasound-mediated blood-brain barrier opening.

Journal: iScience

Authors' code: uva-peirce-cottler-lab/public_REAVER (BSD-3-Clause), TheIlovitshLab/BBBD-REAVER (no license)

Status: code verified, 142 files readable, 5 matches

[36031] doi:10.1016/j.isci.2023.106973 [paper, repository]

The computational rules of cross-modality suppression in the visual posterior sylvian area.

Journal: iScience

Authors' code: RongWang58/VPS (no license)

Status: code verified, 1 file readable

[36032] doi:10.1016/j.isci.2023.106985 [paper]

Dissection of insular cortex layer 5 reveals two sublayers with opposing modulatory roles in appetitive drinking behavior.

Journal: iScience

Status: code on request

[36033] doi:10.1016/j.isci.2023.106987 [paper, data]

Baseline EEG in the first year of life: Preliminary insights into the development of autism spectrum disorder and language impairments.

Journal: iScience

Status: code on request, 1 dataset cited

[36034] doi:10.1038/s41398-023-02475-6 [paper, repository]

The genetic architecture of fornix white matter microstructure and their involvement in neuropsychiatric disorders.

Journal: Translational psychiatry

Authors' code: cog-genomics.org/plink (no license), imputationserver.sph.umich.edu (no license), biit.cs.ut.ee/gprofiler/gost (no license), bulik/ldsc (GPL-3.0), precimed/pleiofdr (GPL-3.0)

Status: code verified, 77 files readable, 4 matches

[36035] doi:10.1038/s41467-023-38537-y [paper, data]

Stacked binding of a PET ligand to Alzheimer's tau paired helical filaments.

Journal: Nature communications

Status: data only, 2 datasets cited

[36036] doi:10.1038/s41531-023-00516-x [paper, repository]

Altered parabrachial nucleus nociceptive processing may underlie central pain in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: f-tract.eu/software/imagin (no license), elifesciences-publications/ImaGIN2_source_code (GPL-3.0)

Status: code verified, 201 files readable

[36037] doi:10.1038/s41598-023-35516-7 [paper, repository]

Respiration organizes gamma synchrony in the prefronto-thalamic network.

Journal: Scientific reports

Authors' code: DiellorBasha/MATLAB_for_Electrophysiology (gpl)

Status: code verified, 2 files readable

[36038] doi:10.1126/sciadv.abq7806 [paper, data]

Microglia mediate neurocognitive deficits by eliminating C1q-tagged synapses in sepsis-associated encephalopathy.

Journal: Science advances

Status: data only, 1 dataset cited

[36039] doi:10.1161/jaha.123.029527 [paper, repository]

Neurovascular Uncoupling Is Linked to Microcirculatory Dysfunction in Regions Outside the Ischemic Core Following Ischemic Stroke.

Journal: Journal of the American Heart Association

Authors' code: BUNPC/OCTA (no license), BUNPC/laserSpeckleImaging (GPL-3.0)

Status: code verified, 24 files readable

[36040] doi:10.1186/s12915-023-01627-w [paper, repository]

Circular RNAs arising from synaptic host genes during human neuronal differentiation are modulated by SFPQ RNA-binding protein.

Journal: BMC biology

Authors' code: Tammimies-Lab/circRNA_neuro (CC0-1.0), Zenodo 7928949 (CC-BY-4.0)

Status: code verified, 8 files readable, 13 matches

[36041] doi:10.1186/s12987-023-00446-z [paper]

Non-invasive flow mapping of parasagittal meningeal lymphatics using 2D interslice flow saturation MRI.

Journal: Fluids and barriers of the CNS

Status: code on request

[36042] doi:10.3389/fbioe.2023.917328 [paper, data]

Dynamic pruning group equivariant network for motor imagery EEG recognition.

Journal: Frontiers in bioengineering and biotechnology

Status: data only, 1 dataset cited

[36043] doi:10.3389/fmed.2023.1157773 [paper, data]

Biochemical-molecular-genetic biomarkers in the tear film, aqueous humor, and blood of primary open-angle glaucoma patients.

Journal: Frontiers in medicine

Status: data only, 2 datasets cited

[36044] doi:10.3389/fneur.2023.1189746 [paper, data]

Predictive model, miRNA-TF network, related subgroup identification and drug prediction of ischemic stroke complicated with mental disorders based on genes related to gut microbiome.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[36045] doi:10.3389/fnmol.2023.1185243 [paper, data]

Differences in the neural basis and transcriptomic patterns in acute and persistent pain-related anxiety-like behaviors.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

Thursday, 25 May 2023 (32 papers, 19 on this page)

[36046] doi:10.1002/hbm.26317 [paper, repository]

Neural similarity in nucleus accumbens during decision-making for the self and a best friend: Links to adolescents' self-reported susceptibility to peer influence and risk taking.

Journal: Human brain mapping

Authors' code: poldrack/slicetimingcorrection (MIT)

Status: code verified, 4 files readable, 2 matches

[36047] doi:10.1002/mds.29455 [paper]

Subthalamic Nucleus Activity during Cognitive Load and Gait Dysfunction in Parkinson's Disease.

Journal: Movement disorders : official journal of the Movement Disorder Society

Status: code on request

[36048] doi:10.1007/s00210-023-02538-x [paper]

Tiagabine and zonisamide differentially regulate the glial properties in an astrocyte-microglia co-culture model of inflammation.

Journal: Naunyn-Schmiedeberg's archives of pharmacology

Status: code on request

[36049] doi:10.1016/j.cell.2023.04.038 [paper, repository]

Generating parallel representations of position and identity in the olfactory system.

Journal: Cell

Authors' code: rjdmoore/fictrac (CC-BY-NC-SA-4.0), jefferislab/2023_cVA_Taisz_Galili (GPL-3.0), Zenodo 7853021 (other-open), jefferislab/skeleton-to-MIP (GPL-3.0), jefferis/scanimage (no license)

Status: code verified, 84 files readable, 5 matches

[36050] doi:10.1016/j.isci.2023.106948 [paper]

The modulatory role of cannabis use in subconcussive neural injury.

Journal: iScience

Status: code on request

[36051] doi:10.1016/j.neuropsychologia.2023.108588 [paper, data]

Does the right temporo-parietal junction play a role in processing indirect speech acts? A transcranial magnetic stimulation study.

Journal: Neuropsychologia

Status: data only, 1 dataset cited

[36052] doi:10.1016/j.stemcr.2023.04.010 [paper]

Oligodendrocytes in human induced pluripotent stem cell-derived cortical grafts remyelinate adult rat and human cortical neurons.

Journal: Stem cell reports

Status: code on request

[36053] doi:10.1038/s41467-023-38851-5 [paper, repository]

Retrosynthesis prediction using an end-to-end graph generative architecture for molecular graph editing.

Journal: Nature communications

Authors' code: Jamson-Zhong/Graph2Edits (MIT), Zenodo 7837349 (other-open), figshare 22649758 (CC-BY-4.0)

Status: code verified, 41 files readable, 6 matches

[36054] doi:10.1038/s41598-023-34604-y [paper]

Distinguishing intentional from nonintentional actions through eeg and kinematic markers.

Journal: Scientific reports

Status: code on request

[36055] doi:10.1038/s41598-023-35270-w [paper, repository]

Automated screening of potential organ donors using a temporal machine learning model.

Journal: Scientific reports

Authors' code: compass-network/clinical (GPL-3.0)

Status: code verified, 11 files readable, 4 matches

[36056] doi:10.1038/s41598-023-35341-y [paper, data]

Transcriptomics-based investigation of manganese dioxide nanoparticle toxicity in rats' choroid plexus.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36057] doi:10.1038/s42255-023-00804-z [paper, data]

Induction of a torpor-like hypothermic and hypometabolic state in rodents by ultrasound.

Journal: Nature metabolism

Status: data only, 1 dataset cited

[36058] doi:10.1038/s44220-023-00067-3 [paper, repository]

Oxytocin normalizes the implicit processing of fearful faces in psychopathy: a randomized crossover study using fMRI.

Journal: Nature. Mental health

Authors' code: afni.nimh.nih.gov/download (no license)

Status: dead link

[36059] doi:10.1088/1741-2552/acd3b1 [paper, data]

Decoding and geometry of ten finger movements in human posterior parietal cortex and motor cortex.

Journal: Journal of neural engineering

Status: data only, 1 dataset cited

[36060] doi:10.1093/braincomms/fcad168 [paper]

An individual data-driven virtual resection model based on epileptic network dynamics in children with intractable epilepsy: a magnetoencephalography interictal activity application.

Journal: Brain communications

Status: code on request

[36061] doi:10.1371/journal.pcbi.1011105 [paper, repository]

Canonical Response Parameterization: Quantifying the structure of responses to single-pulse intracranial electrical brain stimulation.

Journal: PLoS computational biology

Authors' code: OSF tx3yq (no license), kaijmiller/crp_scripts (GPL-3.0), MultimodalNeuroimagingLab/mnl_seegview (GPL-3.0)

Status: code verified, 33 files readable, 8 matches

[36062] doi:10.1371/journal.pcbi.1011184 [paper, repository]

Design of an adaptable intrafascicular electrode (AIR) for selective nerve stimulation by model-based optimization.

Journal: PLoS computational biology

Authors' code: Zenodo 7805759 (CC-BY-4.0)

Status: code verified, 254 files readable, 4 matches

[36063] doi:10.1371/journal.pone.0285086 [paper, data]

Abnormal functional asymmetry and its behavioural correlates in adults with ADHD: A TMS-EEG study.

Journal: PloS one

Status: data only, 1 dataset cited

[36064] doi:10.1523/eneuro.0028-23.2023 [paper, repository]

Ratphones: An Affordable Tool for Highly Controlled Sound Presentation in Freely Moving Rats.

Journal: eNeuro

Authors' code: JosePardoVazquez/RatHeadphones (no license)

Status: empty repository, 1 file readable

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