Every paper, by date: page 162

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 162 of 200: 25 May 2023 to 15 May 2023.

Thursday, 25 May 2023 (32 papers, 13 on this page)

[36065] doi:10.3389/fimmu.2023.1203929 [paper, data]

Harnessing type I interferon-mediated immunity to target malignant brain tumors.

Journal: Frontiers in immunology

Status: data only, 5 datasets cited

[36066] doi:10.3389/fnagi.2023.1162057 [paper]

Altered gut microbiota in older adults with mild cognitive impairment: a case-control study.

Journal: Frontiers in aging neuroscience

Status: data only

[36067] doi:10.3389/fnbeh.2023.1189489 [paper, data]

Characterization of pain-related behaviors and gene expression profiling of peripheral sensory ganglia in a mouse model of acute ankle sprain.

Journal: Frontiers in behavioral neuroscience

Status: data only, 1 dataset cited

[36068] doi:10.3389/fneur.2023.1165020 [paper, data]

The establishment and validation of a prediction model for traumatic intracranial injury patients: a reliable nomogram.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[36069] doi:10.3389/fnmol.2023.1147597 [paper, data]

Excess cerebellar granule neurons induced by the absence of p75NTR during development elicit social behavior deficits in mice.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[36070] doi:10.3389/fpsyg.2023.1173486 [paper, data]

The impact of bilingualism in within-language conflict resolution: an ERP study.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[36071] doi:10.3389/fpsyt.2023.1145375 [paper, repository]

Large epigenome-wide association study identifies multiple novel differentially methylated CpG sites associated with suicidal thoughts and behaviors in veterans.

Journal: Frontiers in psychiatry

Authors' code: StoreyLab/qvalue (no license)

Status: code verified, 12 files readable

[36072] doi:10.3390/ijms24119256 [paper, data]

Exploring the Functional Roles of Telomere Maintenance 2 in the Tumorigenesis of Glioblastoma Multiforme and Drug Responsiveness to Temozolomide.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[36073] doi:10.3390/jdb11020023 [paper, data]

Transcription of <i>HOX</i> Genes Is Significantly Increased during Neuronal Differentiation of iPSCs Derived from Patients with Parkinson's Disease.

Journal: Journal of developmental biology

Status: data only, 1 dataset cited

[36074] doi:10.3390/s23115051 [paper, data]

Decoding Multi-Class Motor Imagery and Motor Execution Tasks Using Riemannian Geometry Algorithms on Large EEG Datasets.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[36075] doi:10.3390/s23115064 [paper, data]

Motor Imagery Classification Based on EEG Sensing with Visual and Vibrotactile Guidance.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[36076] doi:10.7554/elife.84683 [paper, repository]

Task-evoked metabolic demands of the posteromedial default mode network are shaped by dorsal attention and frontoparietal control networks.

Journal: eLife

Authors' code: NeuroimagingLabsMUV/Godbersen2023_eLife (CC0-1.0)

Status: code verified, 4 files readable

[36077] doi:10.7554/elife.85594 [paper, data]

Mutation of <i>vsx</i> genes in zebrafish highlights the robustness of the retinal specification network.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 24 May 2023 (36 papers)

[36078] doi:10.1007/s13311-023-01387-z [paper, data]

Peripheral Administration of the Kv1.3-Blocking Peptide HsTX1[R14A] Improves Cognitive Performance in Senescence Accelerated SAMP8 Mice.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[36079] doi:10.1016/j.crmeth.2023.100486 [paper, repository]

DiI-CT-A bimodal neural tracer for X-ray and fluorescence imaging.

Journal: Cell reports methods

Authors' code: gin.g-node.org/elephant/diict (CC0-1.0)

Status: empty repository, 2 files readable

[36080] doi:10.1016/j.isci.2023.106954 [paper, data]

SARS-CoV-2 S1 protein causes brain inflammation by reducing intracerebral acetylcholine production.

Journal: iScience

Status: code on request, 1 dataset cited

[36081] doi:10.1016/j.isci.2023.106959 [paper]

Differential response of C9orf72 transcripts following neuronal depolarization.

Journal: iScience

Status: code on request

[36082] doi:10.1016/j.neuroimage.2023.120182 [paper, repository]

An automated, geometry-based method for hippocampal shape and thickness analysis.

Journal: NeuroImage

Authors' code: khanlab/hippunfold (MIT), Deep-MI/LaPy (MIT), Deep-MI/hippocampal-shape-tools (no license)

Status: code verified, 123 files readable, 1 match

[36083] doi:10.1016/j.nicl.2023.103439 [paper, data]

7T amygdala and hippocampus subfields in volumetry-based associations with memory: A 3-year follow-up study of early Alzheimer's disease.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[36084] doi:10.1016/j.nicl.2023.103442 [paper, repository]

Reward responsiveness in autism and autistic traits - Evidence from neuronal, autonomic, and behavioural levels.

Journal: NeuroImage. Clinical

Authors' code: OSF vse38 (no license)

Status: code verified, 52 files readable, 10 matches

[36085] doi:10.1016/j.ohx.2023.e00431 [paper, repository]

Synchronization of scanning probe and pixelated sensor for image-guided diffraction microscopy.

Journal: HardwareX

Authors' code: Zenodo 7673922 (CC-BY-4.0), Zenodo 7673921 (CC-BY-4.0)

Status: code verified, 158 files readable, 5 matches

[36086] doi:10.1038/s41467-023-38575-6 [paper, repository]

Homeostatic synaptic plasticity rescues neural coding reliability.

Journal: Nature communications

Authors' code: hhentschke/measures-of-effect-size-toolbox (BSD-2-Clause), ParnasLab/Rozenfeld-et-al-2023 (MIT)

Status: code verified, 37 files readable, 1 match

[36087] doi:10.1038/s41467-023-38586-3 [paper, repository]

Robust cortical encoding of 3D tongue shape during feeding in macaques.

Journal: Nature communications

Authors' code: Zenodo 7734803 (other-open), jdlaurence/xromm-tools (GPL-3.0)

Status: code verified, 28 files readable, 4 matches

[36088] doi:10.1038/s41467-023-38609-z [paper, repository]

Near-lifespan longitudinal tracking of brain microvascular morphology, topology, and flow in male mice.

Journal: Nature communications

Authors' code: optobrain/adp-1-3xtg-cortex (MIT), Zenodo 7834685 (other-open)

Status: code verified, 378 files readable, 4 matches

[36089] doi:10.1038/s41467-023-38712-1 [paper]

A pilot study of closed-loop neuromodulation for treatment-resistant post-traumatic stress disorder.

Journal: Nature communications

Status: code on request

[36090] doi:10.1038/s41467-023-38798-7 [paper, repository]

Primary somatosensory cortex bidirectionally modulates sensory gain and nociceptive behavior in a layer-specific manner.

Journal: Nature communications

Authors' code: iandol/spikes (no license), rebecca-mease/Ziegler_et_al_2023 (no license), Zenodo 7920058 (other-open)

Status: code verified, 714 files readable, 2 matches

[36091] doi:10.1038/s41586-023-06094-5 [paper, repository]

Walking naturally after spinal cord injury using a brain-spine interface.

Journal: Nature

Authors' code: Zenodo 7680471 (CC-BY-4.0)

Status: code verified, 267 files readable, 11 matches

[36092] doi:10.1038/s41586-023-06099-0 [paper, repository]

Gap junctions desynchronize a neural circuit to stabilize insect flight.

Journal: Nature

Authors' code: Zenodo 7740678 (CC-BY-NC-4.0), Zenodo 7740677 (CC-BY-NC-4.0)

Status: code verified, 56 files readable, 3 matches

[36093] doi:10.1038/s42003-023-04891-2 [paper, data]

16p11.2 deletion mice exhibit compromised fronto-temporal connectivity, GABAergic dysfunction, and enhanced attentional ability.

Journal: Communications biology

Status: data only, 1 dataset cited

[36094] doi:10.1098/rsos.221645 [paper, repository]

Interaction of the mechanosensitive microswimmer <i>Paramecium</i> with obstacles.

Journal: Royal Society open science

Authors' code: doi:10.5061/dryad.m63xsj467 (no license), doi:10.6084/m9.figshare.c.6631190 (no license)

Status: code found, still to be checked

[36095] doi:10.1101/2023.05.22.541797 [paper, data]

Wired together, change together: Spike timing modifies transmission in converging assemblies

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[36096] doi:10.1111/ejn.16045 [paper, repository]

A machine learning approach towards the differentiation between interoceptive and exteroceptive attention.

Journal: The European journal of neuroscience

Authors' code: OSF ctqrh (no license)

Status: code verified, 25 files readable, 5 matches

[36097] doi:10.1126/sciadv.ade8259 [paper, data]

Phylogenetic tracing of midbrain-specific regulatory sequences suggests single origin of eubilaterian brains.

Journal: Science advances

Status: data only, 2 datasets cited

[36098] doi:10.1126/sciadv.adf6521 [paper, data]

Transcriptomics reveals amygdala neuron regulation by fasting and ghrelin thereby promoting feeding.

Journal: Science advances

Status: data only, 1 dataset cited

[36099] doi:10.1186/s12873-023-00825-7 [paper, data]

The Rapid Arterial oCclusion Evaluation (RACE) scale accuracy for diagnosis of acute ischemic stroke in emergency department - A multicenter study.

Journal: BMC emergency medicine

Status: data only, 1 dataset cited

[36100] doi:10.1186/s12915-023-01612-3 [paper, data]

Epigenetic regulation of human-specific gene expression in the prefrontal cortex.

Journal: BMC biology

Status: data only, 2 datasets cited

[36101] doi:10.1186/s13293-023-00515-w [paper, repository]

Integrated analysis of robust sex-biased gene signatures in human brain.

Journal: Biology of sex differences

Authors' code: PattaWapee/SexRankBrain (MIT)

Status: code verified, 16 files readable, 3 matches

[36102] doi:10.1186/s13550-023-01001-5 [paper]

Effect of the identification group size and image resolution on the diagnostic performance of metabolic Alzheimer's disease-related pattern.

Journal: EJNMMI research

Status: code on request

[36103] doi:10.1186/s40478-023-01580-3 [paper, data]

Immune stimulation recruits a subset of pro-regenerative macrophages to the retina that promotes axonal regrowth of injured neurons.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[36104] doi:10.1212/wnl.0000000000207423 [paper]

Alzheimer Disease and Epilepsy: A Mendelian Randomization Study.

Journal: Neurology

Status: code on request

[36105] doi:10.1242/dev.201259 [paper, repository]

Shared retinoic acid responsive enhancers coordinately regulate nascent transcription of Hoxb coding and non-coding RNAs in the developing mouse neural tube.

Journal: Development (Cambridge, England)

Authors' code: jouyun/smc-macros (no license), cwood1967/afzal_z_dev2023 (MIT)

Status: code verified, 9 files readable

[36106] doi:10.3389/fcimb.2023.1189008 [paper, data]

Gut microbiota decreased inflammation induced by chronic unpredictable mild stress through affecting NLRP3 inflammasome.

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

[36107] doi:10.3389/fnagi.2023.1120846 [paper, repository]

Discrete Ricci curvatures capture age-related changes in human brain functional connectivity networks.

Journal: Frontiers in aging neuroscience

Authors' code: asamallab/Curvature-FCN-Aging (MIT)

Status: code verified, 6 files readable

[36108] doi:10.3389/fncel.2023.1207350 [paper]

Cell-specific transcriptome changes in the hypothalamic arcuate nucleus in a mouse deoxycorticosterone acetate-salt model of hypertension.

Journal: Frontiers in cellular neuroscience

Status: data only

[36109] doi:10.3389/fncom.2023.1136010 [paper, repository]

Learning cortical hierarchies with temporal Hebbian updates.

Journal: Frontiers in computational neuroscience

Authors' code: MatildeTristany/Learning-Cortical-Hierarchies-with-Temporal-Hebbian-Updates (Apache-2.0)

Status: code verified, 32 files readable

[36110] doi:10.3389/fneur.2023.1194811 [paper, repository]

Loss or gain of function? Effects of ion channel mutations on neuronal firing depend on the neuron type.

Journal: Frontiers in neurology

Authors' code: nkoch1/LOFGOF2023 (MIT)

Status: code verified, 54 files readable, 2 matches

[36111] doi:10.3389/fnmol.2023.1148840 [paper, data]

Comparative analysis of transcriptional changes in zebrafish <i>cep290</i> and <i>bbs2</i> mutants by RNA-seq reveals upregulation of inflammatory and stress-related pathways.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[36112] doi:10.3390/brainsci13060850 [paper]

Excellent Interrater Reliability for Manual Segmentation of the Medial Perirhinal Cortex.

Journal: Brain sciences

Status: code on request

[36113] doi:10.7554/elife.82533 [paper, repository]

Dynamics of pulsatile activities of arcuate kisspeptin neurons in aging female mice.

Journal: eLife

Authors' code: supp:PMC10208635/elife-82533-code1.zip (no license)

Status: code verified, 1 file readable

Tuesday, 23 May 2023 (19 papers)

[36114] doi:10.1007/s10571-023-01361-5 [paper, data]

A Carboxy-terminal Smarcb1 Point Mutation Induces Hydrocephalus Formation and Affects AP-1 and Neuronal Signalling Pathways in Mice.

Journal: Cellular and molecular neurobiology

Status: data only, 1 dataset cited

[36115] doi:10.1016/j.celrep.2023.112545 [paper]

Transcriptional dynamics of delaminating neuroblasts in the mouse otic vesicle.

Journal: Cell reports

Status: code on request

[36116] doi:10.1016/j.celrep.2023.112552 [paper]

The adhesion GPCRs CELSR1-3 and LPHN3 engage G proteins via distinct activation mechanisms.

Journal: Cell reports

Status: code on request

[36117] doi:10.1016/j.celrep.2023.112555 [paper, data]

Frontopolar cortex represents complex features and decision value during choice between environments.

Journal: Cell reports

Status: data only, 2 datasets cited

[36118] doi:10.1016/j.dib.2023.109261 [paper, repository]

Coregistered histology sections with diffusion tensor imaging data at 200 µm resolution in meningioma tumors.

Journal: Data in brief

Authors' code: jan-brabec/microimaging_histology_DIB (CC-BY-4.0), jan-brabec/microimaging_vs_histology_in_meningeomas (CC-BY-4.0), markus-nilsson/md-dmri (other)

Status: code verified, 802 files readable, 14 matches

[36119] doi:10.1016/j.neuroimage.2023.120184 [paper, repository]

Rapid estimation of cortical neuron activation thresholds by transcranial magnetic stimulation using convolutional neural networks.

Journal: NeuroImage

Authors' code: Aman-A/TMSsimCNN_Aberra2023 (GPL-2.0), Zenodo 7326454 (CC-BY-4.0), Zenodo 7326394 (CC-BY-4.0)

Status: code verified, 73 files readable, 13 matches

[36120] doi:10.1016/j.xops.2023.100335 [paper, repository]

Comparative Analysis of Single-cell and Single-nucleus RNA-sequencing in a Rabbit Model of Retinal Detachment-related Proliferative Vitreoretinopathy.

Journal: Ophthalmology science

Authors' code: csanti88/pvr_singlecell_vs_singlenucleiRNAseq_2022 (no license)

Status: code verified, 8 files readable, 5 matches

[36121] doi:10.1038/s41467-023-35967-6 [paper, repository]

Goal-oriented representations in the human hippocampus during planning and navigation.

Journal: Nature communications

Authors' code: jecd/Hippocampgoal (no license), Zenodo 7264243 (other-open)

Status: code verified, 36 files readable, 4 matches

[36122] doi:10.1038/s41467-023-38626-y [paper, repository]

Learning how network structure shapes decision-making for bio-inspired computing.

Journal: Nature communications

Authors' code: BrainModes/fast-slow (EUPL-1.2), Zenodo 7875027 (other-open)

Status: code verified, 38 files readable, 15 matches

[36123] doi:10.1038/s41467-023-38799-6 [paper, data]

Adolescent stress impairs postpartum social behavior via anterior insula-prelimbic pathway in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[36124] doi:10.1038/s41598-023-35533-6 [paper]

Sting and p53 DNA repair pathways are compromised in Alzheimer's disease.

Journal: Scientific reports

Status: code on request

[36125] doi:10.1073/pnas.2217232120 [paper, repository]

Brain imaging and neuropsychological assessment of individuals recovered from a mild to moderate SARS-CoV-2 infection.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: csi-hamburg/2022_petersen_naegele_postcovid_imaging (no license)

Status: code verified, 7 files readable, 1 match

[36126] doi:10.1101/2023.05.23.540979 [paper, repository]

Integrating stereotypes and factual evidence in interpersonal communication

Journal: bioRxiv (preprint)

Authors' code: OSF 3fre2 (no license)

Status: empty repository

[36127] doi:10.1136/jnnp-2022-330790 [paper]

Longitudinal decline in striatal dopamine transporter binding in Parkinson's disease: associations with apathy and anhedonia.

Journal: Journal of neurology, neurosurgery, and psychiatry

Status: code on request

[36128] doi:10.1186/s13229-023-00549-2 [paper, repository]

Identifying the neurodevelopmental and psychiatric signatures of genomic disorders associated with intellectual disability: a machine learning approach.

Journal: Molecular autism

Authors' code: NADonnelly/nd_cnv_ml (no license), nadonnelly.shinyapps.io/cnv_ml_app (no license)

Status: code verified, 17 files readable, 15 matches

[36129] doi:10.1242/dev.201186 [paper, data]

Female reproductive dormancy in Drosophila is regulated by DH31-producing neurons projecting into the corpus allatum.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[36130] doi:10.3389/fcell.2023.1190386 [paper, repository]

Identifying fibrogenic cells following salivary gland obstructive injury.

Journal: Frontiers in cell and developmental biology

Authors' code: MLarsenLab (no license)

Status: code verified

[36131] doi:10.3389/fninf.2023.1128866 [paper, repository]

Quantifying evoked responses through information-theoretical measures.

Journal: Frontiers in neuroinformatics

Authors' code: OSF tnvc4 (no license)

Status: code verified, 10 files readable

[36132] doi:10.7554/elife.85251 [paper, data]

Tau polarizes an aging transcriptional signature to excitatory neurons and glia.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 22 May 2023 (45 papers)

[36133] doi:10.1002/cam4.6071 [paper, data]

Insulin-like growth factor binding protein-2 and glucose-regulated protein 78 kDa: Potential biomarkers affect prognosis in IDH-wildtype glioblastoma patients.

Journal: Cancer medicine

Status: data only, 1 dataset cited

[36134] doi:10.1016/j.isci.2023.106939 [paper, data]

The neurophysiology of continuous action monitoring.

Journal: iScience

Status: data only, 1 dataset cited

[36135] doi:10.1016/j.neuroimage.2023.120183 [paper]

Development and validation of an fMRI-informed EEG model of reward-related ventral striatum activation.

Journal: NeuroImage

Status: code on request

[36136] doi:10.1016/j.xpro.2023.102320 [paper, repository]

WaveMAP for identifying putative cell types from in vivo electrophysiology.

Journal: STAR protocols

Authors' code: EricKenjiLee/WaveMAP_Paper (MIT), slundberg/shap (MIT), AllenInstitute/ecephys_spike_sorting (BSD-2-Clause), doi:10.5061/dryad.z612jm6cf (no license), Zenodo 5123314 (MIT)

Status: code verified, 219 files readable, 13 matches

[36137] doi:10.1021/acs.jmedchem.2c01824 [paper, repository]

Explaining Blood-Brain Barrier Permeability of Small Molecules by Integrated Analysis of Different Transport Mechanisms.

Journal: Journal of medicinal chemistry

Authors' code: bartwesterman/Cornelissen-et-al (MIT)

Status: empty repository, 2 files readable

[36138] doi:10.1038/s41467-023-38485-7 [paper, repository]

Allnighter pseudokinase-mediated feedback links proteostasis and sleep in Drosophila.

Journal: Nature communications

Authors' code: mz27ethio/Ethoscope-Kramerlab (no license), rethomics.github.io (no license)

Status: code verified, 1 file readable

[36139] doi:10.1038/s41467-023-38530-5 [paper, repository]

Cell type specific transcriptomic differences in depression show similar patterns between males and females but implicate distinct cell types and genes.

Journal: Nature communications

Authors' code: LieberInstitute/spatialLIBD (Artistic-2.0), MgssGroup/snRNASeq_public (no license)

Status: code verified, 211 files readable, 34 matches

[36140] doi:10.1038/s41467-023-38571-w [paper, repository]

Functional specialization and interaction in the amygdala-hippocampus circuit during working memory processing.

Journal: Nature communications

Authors' code: Zenodo 7804834 (other-open), ccdan215/working-memory-ieeg (no license)

Status: code verified, 18 files readable, 3 matches

[36141] doi:10.1038/s41467-023-38576-5 [paper, repository]

Semantic novelty modulates neural responses to visual change across the human brain.

Journal: Nature communications

Authors' code: Zenodo 4362645 (other-open), surfer.nmr.mgh.harvard.edu/fswiki/downloadandinstall (no license), medicine.yale.edu/bioimaging/suite (no license), wkentaro/labelme (GPL-3.0), facebookresearch/detectron2 (Apache-2.0), google-research/simclr (Apache-2.0), Zenodo 7811028 (other-open), Zenodo 7154329 (CC-BY-NC-SA-4.0), rdgao/field-echos (no license), netneurolab/neuromaps (CC-BY-NC-SA-4.0), maxnentwich/semantic-novelty (no license)

Status: code verified, 1,228 files readable, 13 matches

[36142] doi:10.1038/s41467-023-38583-6 [paper, data]

Upregulation of breathing rate during running exercise by central locomotor circuits in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[36143] doi:10.1038/s41467-023-38675-3 [paper, repository]

Distinct beta frequencies reflect categorical decisions.

Journal: Nature communications

Authors' code: OSF pza56 (no license)

Status: code verified, 2 files readable, 1 match

[36144] doi:10.1038/s41593-023-01332-5 [paper, repository]

Flexible neural control of transition points within the egg-laying behavioral sequence in Drosophila.

Journal: Nature neuroscience

Authors' code: axellaboratory/Cury_and_Axel_2023 (no license)

Status: code verified, 13 files readable, 2 matches

[36145] doi:10.1038/s41594-023-01004-9 [paper, repository]

Phosphatidylserine-dependent structure of synaptogyrin remodels the synaptic vesicle membrane.

Journal: Nature structural & molecular biology

Authors' code: sokrypton/colabfold (MIT), colab.research.google.com/drive/1lvpsof4l502f21rwbmyjjyyldlou2ntl (no license)

Status: code verified, 74 files readable, 2 matches

[36146] doi:10.1038/s41598-023-34232-6 [paper, repository]

Seg2Link: an efficient and versatile solution for semi-automatic cell segmentation in 3D image stacks.

Journal: Scientific reports

Authors' code: WenChentao/Seg2Link (MIT), WenChentao/seg2link_unet2d (MIT)

Status: code verified, 23 files readable, 1 match

[36147] doi:10.1038/s41598-023-34801-9 [paper, repository]

DELMEP: a deep learning algorithm for automated annotation of motor evoked potential latencies.

Journal: Scientific reports

Authors' code: connect2brain/delmep (GPL-3.0), Zenodo 7920467 (other-open), Zenodo 1326308 (other-open), vhosouza/signalhunter (GPL-3.0)

Status: code verified, 121 files readable, 4 matches

[36148] doi:10.1038/s41598-023-34861-x [paper, repository]

The effect of the preferred hand on drawing movement.

Journal: Scientific reports

Authors' code: lucaoneto/cogn2021_elipses (no license)

Status: code verified, 17 files readable

[36149] doi:10.1038/s41598-023-34943-w [paper, repository]

ACCT is a fast and accessible automatic cell counting tool using machine learning for 2D image segmentation.

Journal: Scientific reports

Authors' code: tkataras/Automatic-Cell-counting-with-TWS (GPL-3.0)

Status: code verified, 9 files readable

[36150] doi:10.1038/s41598-023-35209-1 [paper, repository]

Spatiotemporal characteristics of cortical activities of REM sleep behavior disorder revealed by explainable machine learning using 3D convolutional neural network.

Journal: Scientific reports

Authors' code: heatmapping.org (no license), dosteps/iRBD_XML_3dCNN (GPL-3.0)

Status: code verified, 11 files readable, 6 matches

[36151] doi:10.1038/s41598-023-35294-2 [paper, data]

Pain and the emotional brain: pain-related cortical processes are better reflected by affective evaluation than by cognitive evaluation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36152] doi:10.1038/s42003-023-04926-8 [paper, data]

Mouse microglia express unique miRNA-mRNA networks to facilitate age-specific functions in the developing central nervous system.

Journal: Communications biology

Status: code on request, 1 dataset cited

[36153] doi:10.1038/s42003-023-04942-8 [paper, repository]

Ultra-high field fMRI identifies an action-observation network in the common marmoset.

Journal: Communications biology

Authors' code: OSF hvbmy (no license), Zenodo 7877614 (CC-BY-4.0)

Status: code verified, 7 files readable, 7 matches

[36154] doi:10.1038/s43018-023-00566-3 [paper]

Phenotypic diversity of T cells in human primary and metastatic brain tumors revealed by multiomic interrogation.

Journal: Nature cancer

Status: code on request

[36155] doi:10.1038/s43856-023-00300-1 [paper]

Imaging immunomodulatory treatment responses in a multiple sclerosis mouse model using hyperpolarized ¹³C metabolic MRI.

Journal: Communications medicine

Status: code on request

[36156] doi:10.1073/pnas.2208654120 [paper, repository]

Cortical activity emerges in region-specific patterns during early brain development.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: mhmcc/dunnart-neural-activity (MIT)

Status: code verified, 16 files readable, 24 matches

[36157] doi:10.1073/pnas.2215015120 [paper, repository]

Teachers recruit mentalizing regions to represent learners' beliefs.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF sp5tc (no license)

Status: empty repository

[36158] doi:10.1073/pnas.2217595120 [paper, data]

EGR4 is critical for cell-fate determination and phenotypic maintenance of geniculate ganglion neurons underlying sweet and umami taste.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36159] doi:10.1073/pnas.2218565120 [paper, repository]

Human and chimpanzee shared and divergent neurobiological systems for general and specific cognitive brain functions.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 5346593 (MIT), dutchconnectomelab/simple-brain-plot (no license)

Status: code verified, 6 files readable

[36160] doi:10.1073/pnas.2220575120 [paper, data]

Modulation of deep neural circuits with sonogenetics.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36161] doi:10.1093/jrsssc/qlad035 [paper, repository]

Estimating a brain network predictive of stress and genotype with supervised autoencoders.

Journal: Journal of the Royal Statistical Society. Series C, Applied statistics

Authors' code: carlson-lab (no license), neil-gallagher/CSFA (no license)

Status: code verified, 35 files readable

[36162] doi:10.1128/spectrum.00302-23 [paper, data]

Gut Microbiota Taxon-Dependent Transformation of Microglial M1/M2 Phenotypes Underlying Mechanisms of Spatial Learning and Memory Impairment after Chronic Methamphetamine Exposure.

Journal: Microbiology spectrum

Status: data only, 1 dataset cited

[36163] doi:10.1172/jci.insight.164921 [paper, data]

Hypothalamic and brainstem glucose-dependent insulinotropic polypeptide receptor neurons employ distinct mechanisms to affect feeding.

Journal: JCI insight

Status: data only, 1 dataset cited

[36164] doi:10.1186/s12864-023-09385-3 [paper, data]

Transcriptome profile changes in the jejunum of nonhuman primates exposed to supralethal dose of total- or partial-body radiation.

Journal: BMC genomics

Status: data only, 1 dataset cited

[36165] doi:10.1186/s12911-023-02180-w [paper, data]

An automated detection of epileptic seizures EEG using CNN classifier based on feature fusion with high accuracy.

Journal: BMC medical informatics and decision making

Status: data only, 1 dataset cited

[36166] doi:10.1186/s12974-023-02806-w [paper, data]

Circular RNA Tmcc1 improves astrocytic glutamate metabolism and spatial memory via NF-κB and CREB signaling in a bile duct ligation mouse model: transcriptional and cellular analyses.

Journal: Journal of neuroinflammation

Status: data only, 3 datasets cited

[36167] doi:10.1186/s40035-023-00356-y [paper]

Longitudinal evolution of cortical thickness signature reflecting Lewy body dementia in isolated REM sleep behavior disorder: a prospective cohort study.

Journal: Translational neurodegeneration

Status: code on request

[36168] doi:10.1186/s40478-023-01568-z [paper, repository]

Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function.

Journal: Acta neuropathologica communications

Authors' code: Anna-Williams/Luise_Seeker_Human_WM_Glia (no license)

Status: code verified, 64 files readable, 20 matches

[36169] doi:10.1371/journal.pgen.1010753 [paper, repository]

Taste and pheromonal inputs govern the regulation of time investment for mating by sexual experience in male Drosophila melanogaster.

Journal: PLoS genetics

Authors' code: vib-singlecell-nf (no license)

Status: code verified

[36170] doi:10.1590/1678-9199-jvatitd-2022-0085 [paper, data]

O1-conotoxin Tx6.7 cloned from the genomic DNA of <i>Conus textile</i> that inhibits calcium currents.

Journal: The journal of venomous animals and toxins including tropical diseases

Status: data only, 1 dataset cited

[36171] doi:10.3389/fnagi.2023.1173221 [paper, data]

Age- and time-of-day dependence of glymphatic function in the human brain measured via two diffusion MRI methods.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[36172] doi:10.3389/fnins.2023.1097293 [paper, data]

Identification of necroptosis-related genes in Parkinson's disease by integrated bioinformatics analysis and experimental validation.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[36173] doi:10.3389/fnins.2023.1154549 [paper, repository]

Temporal dynamics of Na/K pump mediated memory traces: insights from conductance-based models of <i>Drosophila</i> neurons.

Journal: Frontiers in neuroscience

Authors' code: modeldb:267620 (no license)

Status: code found, still to be checked

[36174] doi:10.3389/fonc.2023.1007198 [paper]

Exploring the relationship between abnormally high expression of <i>NUP205</i> and the clinicopathological characteristics, immune microenvironment, and prognostic value of lower-grade glioma.

Journal: Frontiers in oncology

Status: data only

[36175] doi:10.3390/bioengineering10050623 [paper, repository]

Automatic Multiple Articulator Segmentation in Dynamic Speech MRI Using a Protocol Adaptive Stacked Transfer Learning U-NET Model.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: eksubin/Protocol-adaptive-STL (no license)

Status: dead link

[36176] doi:10.7554/elife.84333 [paper, repository]

Synaptic and circuit mechanisms prevent detrimentally precise correlation in the developing mammalian visual system.

Journal: eLife

Authors' code: Zenodo 7312024 (other-open), sje30/waverepo (GPL-2.0), aarongarrett/inspyred (MIT), rat-h/pyneuronautofit (no license), modeldb:3815 (no license), modeldb:267589 (no license), rat-h/developmentofthalamocorticalneurons (no license)

Status: code verified, 102 files readable, 5 matches

[36177] doi:10.7554/elife.84566 [paper, repository]

Multi-centre analysis of networks and genes modulated by hypothalamic stimulation in patients with aggressive behaviours.

Journal: eLife

Authors' code: lead-dbs.org (no license)

Status: code verified

Sunday, 21 May 2023 (2 papers)

[36178] doi:10.1002/advs.202300455 [paper]

YBX1-Mediated DNA Methylation-Dependent SHANK3 Expression in PBMCs and Developing Cortical Interneurons in Schizophrenia.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[36179] doi:10.3390/biology12050752 [paper, data]

Cocaine Destroys Gray Matter Brain Cells and Accelerates Brain Aging.

Journal: Biology

Status: data only, 1 dataset cited

Saturday, 20 May 2023 (11 papers)

[36180] doi:10.1002/hbm.26331 [paper, repository]

The arrow-of-time in neuroimaging time series identifies causal triggers of brain function.

Journal: Human brain mapping

Authors' code: TiBiUan/AoT_Benchmarking (no license)

Status: code verified, 34 files readable, 3 matches

[36181] doi:10.1002/hbm.26340 [paper, data]

Hippocampus long-axis specialization throughout development: A meta-analysis.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[36182] doi:10.1007/s10334-023-01093-z [paper]

An integrated target field framework for point-of-care halbach array low-field MRI system design.

Journal: Magma (New York, N.Y.)

Status: code on request

[36183] doi:10.1016/j.heliyon.2023.e16433 [paper, data]

Multimodal assessment of effects of urban environments on psychological wellbeing.

Journal: Heliyon

Status: data only, 1 dataset cited

[36184] doi:10.1038/s41467-023-38595-2 [paper, repository]

Membrane compression by synaptic vesicle exocytosis triggers ultrafast endocytosis.

Journal: Nature communications

Authors' code: shigekiwatanabe/SynapsEM (no license), jliu187/membrane-compression-model (no license)

Status: code verified, 54 files readable, 2 matches

[36185] doi:10.1038/s41598-023-32664-8 [paper, data]

Computational methods of EEG signals analysis for Alzheimer's disease classification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36186] doi:10.1038/s41598-023-35013-x [paper, data]

Autistic traits shape neuronal oscillations during emotion perception under attentional load modulation.

Journal: Scientific reports

Status: data only, 3 datasets cited

[36187] doi:10.1093/ve/vead033 [paper, repository]

Mutation rate, selection, and epistasis inferred from RNA virus haplotypes via neural posterior estimation.

Journal: Virus evolution

Authors' code: Stern-Lab/ms2-mutation-rate (no license)

Status: code verified, 18 files readable, 3 matches

[36188] doi:10.1186/s12974-023-02787-w [paper, data]

Pathological hemodynamic changes and leukocyte transmigration disrupt the blood-spinal cord barrier after spinal cord injury.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[36189] doi:10.21769/bioprotoc.4675 [paper, repository]

Quantifying Single and Dual Channel Live Imaging Data: Kymograph Analysis of Organelle Motility in Neurons.

Journal: Bio-protocol

Authors' code: alduston/kymomerge (no license)

Status: code verified, 1 file readable

[36190] doi:10.3390/antiox12051134 [paper, data]

JAC4 Alleviates Rotenone-Induced Parkinson's Disease through the Inactivation of the NLRP3 Signal Pathway.

Journal: Antioxidants (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 19 May 2023 (26 papers)

[36191] doi:10.1016/j.gpb.2023.03.003 [paper, data]

Morphine Re-arranges Chromatin Spatial Architecture of Primate Cortical Neurons.

Journal: Genomics, proteomics & bioinformatics

Status: data only, 1 dataset cited

[36192] doi:10.1016/j.isci.2023.106905 [paper]

Activity-dependent tau cleavage by caspase-3 promotes neuronal dysfunction and synaptotoxicity.

Journal: iScience

Status: code on request

[36193] doi:10.1016/j.isci.2023.106909 [paper, repository]

Integrative systems biology characterizes immune-mediated neurodevelopmental changes in murine Zika virus microcephaly.

Journal: iScience

Authors' code: ncbi.nlm.nih.gov/geo (no license), cole-trapnell-lab/cufflinks (BSL-1.0)

Status: code verified, 182 files readable, 1 match

[36194] doi:10.1016/j.isci.2023.106919 [paper]

Sox9 regulates melanocytic fate decision of adult hair follicle stem cells.

Journal: iScience

Status: code on request

[36195] doi:10.1016/j.isci.2023.106920 [paper, repository]

Lipopolysaccharide increases bitter taste sensitivity via epigenetic changes in <i>Tas2r</i> gene clusters.

Journal: iScience

Authors' code: Cailu086Lin/scATACseq_mouse_taste (no license)

Status: empty repository, 1 file readable

[36196] doi:10.1016/j.nicl.2023.103441 [paper, repository]

DGA3-Net: A parameter-efficient deep learning model for ASPECTS assessment for acute ischemic stroke using non-contrast computed tomography.

Journal: NeuroImage. Clinical

Authors' code: Shih-Yen/DGA3Net (no license)

Status: code verified, 34 files readable, 7 matches

[36197] doi:10.1016/j.xcrm.2023.101054 [paper, repository]

Immune microenvironment remodeling after radiation of a progressing brain metastasis.

Journal: Cell reports. Medicine

Authors' code: lh3/bwa (GPL-3.0), alexdobin/STAR (MIT)

Status: code verified, 399 files readable

[36198] doi:10.1038/s41467-023-38574-7 [paper, repository]

A rapid theta network mechanism for flexible information encoding.

Journal: Nature communications

Authors' code: OSF rx2zd (no license)

Status: code verified, 20 files readable, 1 match

[36199] doi:10.1038/s41597-023-02195-y [paper, repository]

iOBPdb A Database for Experimentally Determined Functional Characterization of Insect Odorant Binding Proteins.

Journal: Scientific data

Authors' code: sshuklz/iobpdb_app (MIT)

Status: code verified, 2 files readable, 8 matches

[36200] doi:10.1038/s41597-023-02218-8 [paper, data]

The chromosome-level genome assembly and genes involved in biosynthesis of nervonic acid of Malania oleifera.

Journal: Scientific data

Status: data only, 3 datasets cited

[36201] doi:10.1038/s41598-023-34998-9 [paper]

Information load dynamically modulates functional brain connectivity during narrative listening.

Journal: Scientific reports

Status: code on request

[36202] doi:10.1038/s41598-023-35232-2 [paper, repository]

Community detection in multi-frequency EEG networks.

Journal: Scientific reports

Authors' code: SPLab-aviyente/MLModularityForEEG (GPL-3.0)

Status: code verified, 18 files readable, 4 matches

[36203] doi:10.1038/s41598-023-35322-1 [paper, repository]

An 8-cage imaging system for automated analyses of mouse behavior.

Journal: Scientific reports

Authors' code: Creton-Lab (no license)

Status: code verified

[36204] doi:10.1111/cns.14268 [paper, data]

Delayed CO₂ postconditioning promotes neurological recovery after cryogenic traumatic brain injury by downregulating IRF7 expression.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[36205] doi:10.1111/cns.14270 [paper, repository]

Corticospinal fibers with different origins impair in amyotrophic lateral sclerosis: A neurite orientation dispersion and density imaging study.

Journal: CNS neuroscience & therapeutics

Authors' code: robbert-harms/MDT (LGPL-3.0)

Status: code verified, 189 files readable, 4 matches

[36206] doi:10.1126/sciadv.add8164 [paper, data]

Non-cell-autonomous regulation of interneuron specification mediated by extracellular vesicles.

Journal: Science advances

Status: data only, 2 datasets cited

[36207] doi:10.1126/sciadv.adf9445 [paper, data]

A revised perspective on the evolution of the lateral frontal cortex in primates.

Journal: Science advances

Status: data only, 1 dataset cited

[36208] doi:10.1186/s12920-023-01538-3 [paper, data]

Analysis and validation of aging-related genes in prognosis and immune function of glioblastoma.

Journal: BMC medical genomics

Status: code on request, 1 dataset cited

[36209] doi:10.1371/journal.pone.0285581 [paper, repository]

Acute effects of nitrate and breakfast on working memory, cerebral blood flow, arterial stiffness, and psychological factors in adolescents: Study protocol for a randomised crossover trial.

Journal: PloS one

Authors' code: huppertt/nirs-toolbox (no license)

Status: code verified, 2,000 files readable, 4 matches

[36210] doi:10.1371/journal.pone.0285740 [paper, data]

Changes in the cochlear and retrocochlear parts of the auditory system in 19-39 and 40-60 years old patients with type 1 diabetes mellitus.

Journal: PloS one

Status: data only, 1 dataset cited

[36211] doi:10.1503/jpn.220206 [paper, repository]

Genomic variants and inferred biological processes in multiplex families with Tourette syndrome.

Journal: Journal of psychiatry & neuroscience : JPN

Authors' code: ippas/imdik-zekanowski-gts (no license)

Status: code verified, 23 files readable, 2 matches

[36212] doi:10.23736/s1973-9087.23.07754-7 [paper, data]

When the practice does not meet the theory: results from an Italian survey on the clinical and pathway management of inpatients with decompressive craniectomy or cranioplasty admitted to rehabilitation.

Journal: European journal of physical and rehabilitation medicine

Status: data only, 1 dataset cited

[36213] doi:10.3390/cancers15102837 [paper, data]

Efficient Brain Tumor Detection with Lightweight End-to-End Deep Learning Model.

Journal: Cancers

Status: data only, 2 datasets cited

[36214] doi:10.3390/cancers15102842 [paper, data]

Mass Spectrometry Imaging Reveals Abnormalities in Cardiolipin Composition and Distribution in Astrocytoma Tumor Tissues.

Journal: Cancers

Status: data only, 1 dataset cited

[36215] doi:10.7554/elife.75586 [paper, data]

Making memories last using the peripheral effect of direct current stimulation.

Journal: eLife

Status: data only, 1 dataset cited

[36216] doi:10.7554/elife.83971 [paper, data]

Neural dynamics underlying self-control in the primate subthalamic nucleus.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 18 May 2023 (25 papers)

[36217] doi:10.1002/brb3.3028 [paper, data]

Deep convolutional architecture-based hybrid learning for sleep arousal events detection through single-lead EEG signals.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[36218] doi:10.1007/s00401-023-02585-x [paper, data]

Galectin-3 shapes toxic alpha-synuclein strains in Parkinson's disease.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[36219] doi:10.1007/s11227-023-05327-8 [paper, data]

Time-aware neural ordinary differential equations for incomplete time series modeling.

Journal: The Journal of supercomputing

Status: data only, 1 dataset cited

[36220] doi:10.1016/j.dcn.2023.101256 [paper, repository]

Characterizing the dimensional structure of early-life adversity in the Adolescent Brain Cognitive Development (ABCD) Study.

Journal: Developmental cognitive neuroscience

Authors' code: OSF 28cb7 (no license)

Status: code verified, 13 files readable, 10 matches

[36221] doi:10.1038/s41419-023-05823-y [paper, data]

Identification of RAC1 in promoting brain metastasis of lung adenocarcinoma using single-cell transcriptome sequencing.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[36222] doi:10.1038/s41467-023-37833-x [paper, data]

Identification of age-specific gene regulators of La Crosse virus neuroinvasion and pathogenesis.

Journal: Nature communications

Status: data only, 1 dataset cited

[36223] doi:10.1038/s41467-023-38529-y [paper, repository]

Distributing task-related neural activity across a cortical network through task-independent connections.

Journal: Nature communications

Authors' code: SpikingNetwork/distributedActivity (BSD-3-Clause), Zenodo 7684907 (other-open)

Status: code verified, 38 files readable

[36224] doi:10.1038/s41467-023-38585-4 [paper, repository]

Assortative mixing in micro-architecturally annotated brain connectomes.

Journal: Nature communications

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), netneurolab/netneurotools (BSD-3-Clause), netneurolab/bazinet_assortativity (no license)

Status: code verified, 141 files readable, 25 matches

[36225] doi:10.1038/s41467-023-38602-6 [paper, repository]

Association of gout with brain reserve and vulnerability to neurodegenerative disease.

Journal: Nature communications

Authors' code: NightingaleHealth/ggforestplot (MIT), TomMaullin/BLMM (no license)

Status: code verified, 60 files readable, 1 match

[36226] doi:10.1038/s41593-023-01321-8 [paper, repository]

Genetic patterning for child psychopathology is distinct from that for adults and implicates fetal cerebellar development.

Journal: Nature neuroscience

Authors' code: hughesdy/ABCD-NDV-CBC (no license)

Status: code verified, 7 files readable, 7 matches

[36227] doi:10.1038/s41593-023-01346-z [paper, repository]

A motor association area in the depths of the central sulcus.

Journal: Nature neuroscience

Authors' code: OSF p5n2k (no license)

Status: code verified

[36228] doi:10.1038/s41598-023-34650-6 [paper, repository]

Diagnosis of autism spectrum disorder based on functional brain networks and machine learning.

Journal: Scientific reports

Authors' code: Carol180619/Paper-autism (no license)

Status: dead link

[36229] doi:10.1038/s42003-023-04898-9 [paper]

Nanoparticle-based targeting of microglia improves the neural regeneration enhancing effects of immunosuppression in the zebrafish retina.

Journal: Communications biology

Status: code on request

[36230] doi:10.1038/s42003-023-04912-0 [paper, repository]

Correlated variability in primate superior colliculus depends on functional class.

Journal: Communications biology

Authors' code: doi:10.5061/dryad.12jm63z0r (no license)

Status: code verified

[36231] doi:10.1088/1741-2552/acd0d5 [paper, repository]

&lt;i&gt;In silico&lt;/i&gt;development and validation of Bayesian methods for optimizing deep brain stimulation to enhance cognitive control.

Journal: Journal of neural engineering

Authors' code: tne-lab/DBSParameterOptimization2022 (no license)

Status: code verified, 79 files readable, 4 matches

[36232] doi:10.1186/s13578-023-01050-2 [paper, data]

Circuit- and laminar-specific regulation of medial prefrontal neurons by chronic stress.

Journal: Cell & bioscience

Status: data only, 1 dataset cited

[36233] doi:10.1371/journal.pone.0285286 [paper, data]

Early neuro-electric indication of lexical match in English spoken-word recognition.

Journal: PloS one

Status: data only, 1 dataset cited

[36234] doi:10.3389/fcell.2023.1138392 [paper, data]

Metabolic decline in an insect ear: correlative or causative for age-related auditory decline?

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[36235] doi:10.3389/fninf.2023.1175886 [paper, data]

Brain subnetworks most sensitive to alterations of functional connectivity in Schizophrenia: a data-driven approach.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[36236] doi:10.3389/fnins.2023.1142892 [paper, data]

SSVEP detection assessment by combining visual stimuli paradigms and no-training detection methods.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[36237] doi:10.3389/fnins.2023.1151544 [paper, repository]

Cortical depth-dependent human fMRI of resting-state networks using EPIK.

Journal: Frontiers in neuroscience

Authors' code: layerfMRI/LAYNII (BSD-3-Clause)

Status: code verified, 117 files readable, 1 match

[36238] doi:10.3389/fnins.2023.1198154 [paper]

Protecting RNA quality for spatial transcriptomics while improving immunofluorescent staining quality.

Journal: Frontiers in neuroscience

Status: data only

[36239] doi:10.3390/bioengineering10050609 [paper, data]

Transformer-Based Network with Optimization for Cross-Subject Motor Imagery Identification.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[36240] doi:10.3390/brainsci13050820 [paper, data]

Automatic Seizure Detection and Prediction Based on Brain Connectivity Features and a CNNs Meet Transformers Classifier.

Journal: Brain sciences

Status: data only, 1 dataset cited

[36241] doi:10.3390/bs13050427 [paper, data]

Predicting Alcohol-Related Memory Problems in Older Adults: A Machine Learning Study with Multi-Domain Features.

Journal: Behavioral sciences (Basel, Switzerland)

Status: data only, 1 dataset cited

Wednesday, 17 May 2023 (26 papers)

[36242] doi:10.1002/hbm.26333 [paper, repository]

Brain-wide associations between white matter and age highlight the role of fornix microstructure in brain ageing.

Journal: Human brain mapping

Authors' code: NYU-DiffusionMRI/DESIGNER (MIT), reisert/baydiff (BSD-2-Clause), ekaden/smt (BSD-2-Clause), OSF nv8ea (no license)

Status: code verified, 108 files readable, 14 matches

[36243] doi:10.1002/hbm.26334 [paper, repository]

Cortical plasticity in central vision loss: Cortical thickness and neurite structure.

Journal: Human brain mapping

Authors' code: Visscher-Lab/Defenderfer_2022_HBM (GPL-3.0)

Status: code verified, 32 files readable, 7 matches

[36244] doi:10.1002/hbm.26337 [paper, repository]

Significant heterogeneity in structural asymmetry of the habenula in the human brain: A systematic review and meta-analysis.

Journal: Human brain mapping

Authors' code: OSF f7tpz (no license)

Status: code verified, 2 files readable, 2 matches

[36245] doi:10.1016/j.celrep.2023.112521 [paper, repository]

Resting-state cortical hubs in youth organize into four categories.

Journal: Cell reports

Authors' code: iamdamion (no license), Zenodo 7814714 (other-open), iamdamion/demeter_etal_2023 (no license)

Status: code verified, 4 files readable, 3 matches

[36246] doi:10.1016/j.crmeth.2023.100482 [paper, repository]

Extracting electromyographic signals from multi-channel LFPs using independent component analysis without direct muscular recording.

Journal: Cell reports methods

Authors' code: Zenodo 7859753 (CC-BY-4.0), HisayukiOsanai/IC-EMG (no license)

Status: code verified, 4 files readable, 2 matches

[36247] doi:10.1038/s41467-023-38495-5 [paper, data]

The in-tissue molecular architecture of β-amyloid pathology in the mammalian brain.

Journal: Nature communications

Status: data only, 4 datasets cited

[36248] doi:10.1038/s41586-023-05936-6 [paper, repository]

Ancient gene linkages support ctenophores as sister to other animals.

Journal: Nature

Authors' code: rambaut/figtree (no license), doi:10.5061/dryad.dncjsxm47 (no license), conchoecia/odp (MIT), Zenodo 7857390 (other-open), Zenodo 7707938 (other-open)

Status: code verified, 275 files readable, 4 matches

[36249] doi:10.1038/s41597-023-02214-y [paper, repository]

Responses of pyramidal cell somata and apical dendrites in mouse visual cortex over multiple days.

Journal: Scientific data

Authors' code: schnitzer-lab/EXTRACT-public (MIT), jeromelecoq/qc_2p (BSD-2-Clause), colleenjg/OpenScope_CA_Analysis (MIT), AllenInstitute/AllenSDK (BSD-2-Clause), colleenjg/cred_assign_stimuli (GPL-3.0), AllenInstitute/ophys_nway_matching (BSD-2-Clause), doi:10.6084/m9.figshare.c.6567103.v1 (no license)

Status: code verified, 1,341 files readable, 11 matches

[36250] doi:10.1038/s41598-023-33482-8 [paper, repository]

Mean amplitude of low frequency fluctuations measured by fMRI at 11.7 T in the aging brain of mouse lemur primate.

Journal: Scientific reports

Authors' code: sammba-mri.github.io (no license)

Status: code verified

[36251] doi:10.1038/s41598-023-34310-9 [paper, repository]

Blink-To-Live eye-based communication system for users with speech impairments.

Journal: Scientific reports

Authors' code: ZW01f/Blink-To-Live (no license)

Status: code verified, 4 files readable, 5 matches

[36252] doi:10.1038/s41598-023-34772-x [paper, data]

Tfap2b acts in GABAergic neurons to control sleep in mice.

Journal: Scientific reports

Status: data only, 3 datasets cited

[36253] doi:10.1098/rspb.2023.0460 [paper, repository]

Walking bumblebees see faster.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.5061/dryad.zs7h44jf6 (no license), doi:10.6084/m9.figshare.c.6626112 (no license), Zenodo 7825638 (CC-BY-NC-4.0)

Status: code verified, 5 files readable, 2 matches

[36254] doi:10.1117/1.nph.10.4.044402 [paper]

Imaging dendritic spines in the hippocampus of a living mouse by 3D-stimulated emission depletion microscopy.

Journal: Neurophotonics

Status: code on request

[36255] doi:10.1159/000530993 [paper, data]

Intrauterine Blood Transfusion for Parvo B19-Induced Fetal Anemia: Neuroimaging Findings and Long-Term Neurological Outcomes.

Journal: Fetal diagnosis and therapy

Status: data only, 10 datasets cited

[36256] doi:10.1186/s12886-023-02944-y [paper, repository]

Stereoptic serious games as a visual rehabilitation tool for individuals with a residual amblyopia (AMBER trial): a protocol for a crossover randomized controlled trial.

Journal: BMC ophthalmology

Authors' code: lorafanda/regrad (no license), Zenodo 8413090 (CC-BY-4.0), Zenodo 8413228 (CC-BY-4.0), Zenodo 8413091 (CC-BY-4.0)

Status: code verified, 12 files readable

[36257] doi:10.1186/s13059-023-02951-8 [paper, repository]

Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data.

Journal: Genome biology

Authors' code: szczurek-lab/qupath-spot-utils (GPL-3.0), szczurek-lab/Celloscope (GPL-3.0), Zenodo 7817712 (GPL-2.0)

Status: code verified, 34 files readable, 2 matches

[36258] doi:10.1371/journal.pone.0276307 [paper, data]

Extravascular optical coherence tomography of cerebral vessel walls in vivo.

Journal: PloS one

Status: data only, 1 dataset cited

[36259] doi:10.1371/journal.pone.0283682 [paper, data]

Selecting police super-recognisers.

Journal: PloS one

Status: data only, 1 dataset cited

[36260] doi:10.3389/fnmol.2023.1155175 [paper, data]

AGE-RAGE axis culminates into multiple pathogenic processes: a central road to neurodegeneration.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[36261] doi:10.3389/fonc.2023.1163289 [paper, data]

Pre-diagnostic blood biomarkers for adult glioma.

Journal: Frontiers in oncology

Status: data only, 12 datasets cited

[36262] doi:10.3389/fvets.2023.1169617 [paper, data]

Multiplex analysis of cytokines in the cerebrospinal fluid of dogs after ischemic stroke reveals elevations in chemokines CXCL1 and MCP-1.

Journal: Frontiers in veterinary science

Status: data only, 1 dataset cited

[36263] doi:10.3390/cells12101418 [paper, repository]

LPS-Induced Systemic Inflammation Affects the Dynamic Interactions of Astrocytes and Microglia with the Vasculature of the Mouse Brain Cortex.

Journal: Cells

Authors' code: gitlab.pasteur.fr/iah-public/ptrmiad-thomaidou (BSD-3-Clause)

Status: code verified, 3 files readable

[36264] doi:10.3390/diagnostics13101769 [paper, data]

Distinguishing Parkinson's Disease with GLCM Features from the Hankelization of EEG Signals.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[36265] doi:10.3390/diagnostics13101771 [paper, data]

Identifying Effective Feature Selection Methods for Alzheimer's Disease Biomarker Gene Detection Using Machine Learning.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[36266] doi:10.3758/s13415-023-01097-1 [paper, repository]

Slip or fallacy? Effects of error severity on own and observed pitch error processing in pianists.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF 8e2ja (no license)

Status: code verified, 42 files readable, 1 match

[36267] doi:10.7554/elife.81774 [paper, repository]

Response outcome gates the effect of spontaneous cortical state fluctuations on perceptual decisions.

Journal: eLife

Authors' code: doi:10.5061/dryad.w0vt4b8vf (no license)

Status: code verified

Tuesday, 16 May 2023 (16 papers)

[36268] doi:10.1016/j.celrep.2023.112492 [paper, repository]

Cell-type-specific propagation of visual flicker.

Journal: Cell reports

Authors' code: buzsakilab/buzcode (GPL-3.0), SchneiderMarius/FlickerModel (no license)

Status: code verified, 2,203 files readable, 15 matches

[36269] doi:10.1016/j.cortex.2022.12.016 [paper, repository]

A network-level test of the role of the co-activated default mode network in episodic recall and social cognition.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Authors' code: JacksonBecky/ICA (no license)

Status: code verified, 2 files readable

[36270] doi:10.1016/j.crmeth.2023.100481 [paper, data]

Longitudinal &lt;i&gt;in vivo&lt;/i&gt; monitoring of axonal degeneration after brain injury.

Journal: Cell reports methods

Status: code on request, 3 datasets cited

[36271] doi:10.1016/j.ohx.2023.e00429 [paper, repository]

Open-MAC: A low-cost open-source motorized commutator for electro- and opto-physiological recordings in freely moving rodents.

Journal: HardwareX

Authors' code: KaetzelLab/Open-MAC (GPL-3.0)

Status: code verified, 2 files readable

[36272] doi:10.1038/s41467-023-38215-z [paper, repository]

A pesticide and iPSC dopaminergic neuron screen identifies and classifies Parkinson-relevant pesticides.

Journal: Nature communications

Authors' code: KCPaul-lab/NatComms_PWAS (no license)

Status: code verified, 1 file readable, 11 matches

[36273] doi:10.1038/s41598-023-35127-2 [paper, data]

Posterior hippocampal CA2/3 volume is associated with autobiographical memory recall ability in lower performing individuals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36274] doi:10.1073/pnas.2218478120 [paper, repository]

Aneuploidy effects on human gene expression across three cell types.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Ilarius/DS_meta_analysis (no license)

Status: code verified, 18 files readable

[36275] doi:10.1073/pnas.2218506120 [paper, data]

<i>oskar</i> acts with the transcription factor Creb to regulate long-term memory in crickets.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36276] doi:10.1186/s12974-023-02802-0 [paper, data]

Inhibition of discoidin domain receptor (DDR)-1 with nilotinib alters CSF miRNAs and is associated with reduced inflammation and vascular fibrosis in Alzheimer's disease.

Journal: Journal of neuroinflammation

Status: data only, 4 datasets cited

[36277] doi:10.1523/eneuro.0087-23.2023 [paper, repository]

A History of Low-Dose Ethanol Shifts the Role of Ventral Hippocampus during Reward Seeking in Male Mice.

Journal: eNeuro

Authors' code: bsingh0110/Progressive-Ratio-Analysis- (no license)

Status: code verified, 3 files readable, 2 matches

[36278] doi:10.3389/fncel.2023.1193485 [paper, data]

PLC regulates spontaneous glutamate release triggered by extracellular calcium and readily releasable pool size in neocortical neurons.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[36279] doi:10.3389/fncom.2023.1189853 [paper, repository]

Predicting the distribution of serotonergic axons: a supercomputing simulation of reflected fractional Brownian motion in a 3D-mouse brain model.

Journal: Frontiers in computational neuroscience

Authors' code: Zenodo 7753852 (MIT), Zenodo 7753853 (MIT)

Status: code verified, 2 files readable

[36280] doi:10.3389/fnins.2023.1191683 [paper, data]

Epileptic seizures detection and the analysis of optimal seizure prediction horizon based on frequency and phase analysis.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[36281] doi:10.3390/jcm12103485 [paper, data]

Potential Ototoxicity of Insulin-like Growth Factor 1 Receptor Signaling Inhibitors: An In Silico Drug Repurposing Study of the Regenerating Cochlear Neuron Transcriptome.

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

[36282] doi:10.7554/elife.82249 [paper, repository]

<i>linc-mipep</i> and <i>linc-wrb</i> encode micropeptides that regulate chromatin accessibility in vertebrate-specific neural cells.

Journal: eLife

Authors' code: vejnar/notebooks (MIT), giraldezlab.org/data/ribosome_profiling (no license), Zenodo 7644073 (other-open), katherinecdu/zebrafish (MIT), francoiskroll/micropeptides_fingerprints (MIT), lee1701/tornini2023a (MIT), jrihel/sleep-analysis (CC0-1.0), vejnar/labxpipe (MPL-2.0), vejnar/geneabacus (MPL-2.0), vejnar/ReadKnead (MPL-2.0)

Status: code verified, 129 files readable, 13 matches

[36283] doi:10.7554/elife.84531 [paper, repository]

Are single-peaked tuning curves tuned for speed rather than accuracy?

Journal: eLife

Authors' code: movitzle/Short_Decoding_Time (MIT)

Status: code verified, 58 files readable, 8 matches

Monday, 15 May 2023 (41 papers, 5 on this page)

[36284] doi:10.1002/mrm.29705 [paper, repository]

Robust retrospective motion correction of head motion using navigator-based and markerless motion tracking techniques.

Journal: Magnetic resonance in medicine

Authors' code: dgallichan/retroMoCoBox (GPL-3.0)

Status: code verified, 345 files readable, 5 matches

[36285] doi:10.1007/s11060-023-04319-1 [paper, data]

Class I HDAC inhibitor entinostat synergizes with PLK1 inhibitors in MYC-amplified medulloblastoma cells.

Journal: Journal of neuro-oncology

Status: data only, 1 dataset cited

[36286] doi:10.1007/s12035-023-03366-z [paper, repository]

Palmitic Acid Upregulates Type I Interferon-Mediated Antiviral Response and Cholesterol Biosynthesis in Human Astrocytes.

Journal: Molecular neurobiology

Authors' code: alrojascr/Astrocyte-RNAseq-Analysis (no license)

Status: code verified, 5 files readable, 4 matches

[36287] doi:10.1016/j.patter.2023.100756 [paper, repository]

Connectome-based machine learning models are vulnerable to subtle data manipulations.

Journal: Patterns (New York, N.Y.)

Authors' code: Zenodo 7750583 (other-open), mattrosenblatt7/trust_connectomes (no license)

Status: code verified, 40 files readable, 9 matches

[36288] doi:10.1016/j.stem.2023.04.016 [paper, repository]

The single-cell and spatial transcriptional landscape of human gastrulation and early brain development.

Journal: Cell stem cell

Authors' code: aertslab/pySCENIC (GPL-3.0)

Status: code verified, 48 files readable, 2 matches

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