Every paper, by date: page 163

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 163 of 200: 15 May 2023 to 6 May 2023.

Monday, 15 May 2023 (41 papers, 36 on this page)

[36289] doi:10.1016/j.xcrm.2023.101042 [paper]

A living ex vivo platform for functional, personalized brain cancer diagnosis.

Journal: Cell reports. Medicine

Status: code on request

[36290] doi:10.1038/s41467-023-38140-1 [paper, data]

Prioritization of potential causative genes for schizophrenia in placenta.

Journal: Nature communications

Status: code on request, 2 datasets cited

[36291] doi:10.1038/s41467-023-38410-y [paper, data]

Peripheral modulation of antidepressant targets MAO-B and GABAAR by harmol induces mitohormesis and delays aging in preclinical models.

Journal: Nature communications

Status: data only, 1 dataset cited

[36292] doi:10.1038/s41467-023-38475-9 [paper]

Glutamatergic cerebellar neurons differentially contribute to the acquisition of motor and social behaviors.

Journal: Nature communications

Status: code on request

[36293] doi:10.1038/s41593-023-01325-4 [paper, data]

Early alterations in the MCH system link aberrant neuronal activity and sleep disturbances in a mouse model of Alzheimer's disease.

Journal: Nature neuroscience

Status: data only, 2 datasets cited

[36294] doi:10.1038/s41598-023-34787-4 [paper, data]

Transcriptomic and glycomic analyses highlight pathway-specific glycosylation alterations unique to Alzheimer's disease.

Journal: Scientific reports

Status: data only, 3 datasets cited

[36295] doi:10.1038/s42003-023-04791-5 [paper, repository]

Predictive network analysis identifies JMJD6 and other potential key drivers in Alzheimer's disease.

Journal: Communications biology

Authors' code: labs.icahn.mssm.edu/zhulab/software (no license), multiscale/coexpp (no license)

Status: code verified, 19 files readable

[36296] doi:10.1038/s42003-023-04884-1 [paper]

α-Synuclein fibril and synaptic vesicle interactions lead to vesicle destruction and increased lipid-associated fibril uptake into iPSC-derived neurons.

Journal: Communications biology

Status: code on request

[36297] doi:10.1038/s42003-023-04894-z [paper, repository]

Hemispheric asymmetries and brain size in mammals.

Journal: Communications biology

Authors' code: OSF kq596 (no license)

Status: empty repository

[36298] doi:10.1073/pnas.2218958120 [paper, repository]

Targeted neurostimulation reverses a spatiotemporal biomarker of treatment-resistant depression.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ryraut/lag-code (other)

Status: code verified, 10 files readable

[36299] doi:10.1073/pnas.2301330120 [paper, data]

Astrocytic control of extracellular GABA drives circadian timekeeping in the suprachiasmatic nucleus.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36300] doi:10.1093/pnasnexus/pgad161 [paper, repository]

Competition on presynaptic resources enhances the discrimination of interfering memories.

Journal: PNAS nexus

Authors' code: fccaa/Synaptic_Competition (no license)

Status: code verified, 12 files readable

[36301] doi:10.1093/texcom/tgad008 [paper, repository]

Multivariate associations between dopamine receptor availability and risky investment decision-making across adulthood.

Journal: Cerebral cortex communications

Authors' code: OSF yjqpb (no license)

Status: code verified, 20 files readable, 3 matches

[36302] doi:10.1098/rstb.2022.0083 [paper, repository]

Developmental origin underlies evolutionary rate variation across the placental skull.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: anjgoswami/Goswami_et_al_Placental_evolution_2022 (GPL-3.0), rnfelice/SURGE (GPL-3.0), doi:10.6084/m9.figshare.c.6602949 (no license)

Status: code verified, 12 files readable, 3 matches

[36303] doi:10.1172/jci162253 [paper, repository]

Complement C3a treatment accelerates recovery after stroke via modulation of astrocyte reactivity and cortical connectivity.

Journal: The Journal of clinical investigation

Authors' code: aswendt-lab (no license)

Status: code verified

[36304] doi:10.1172/jci166919 [paper, data]

Genetic predisposition to neuroblastoma results from a regulatory polymorphism that promotes the adrenergic cell state.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[36305] doi:10.1186/s12974-023-02799-6 [paper, data]

Novel CH25H⁺ and OASL⁺ microglia subclusters play distinct roles in cerebral ischemic stroke.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[36306] doi:10.1371/journal.pcbi.1009616 [paper, repository]

Modelling novelty detection in the thalamocortical loop.

Journal: PLoS computational biology

Authors' code: ChaoHan-UoS/SomatosensorySSA_Model (MIT)

Status: code verified, 6 files readable, 12 matches

[36307] doi:10.1371/journal.pcbi.1011097 [paper, repository]

Targeting operational regimes of interest in recurrent neural networks.

Journal: PLoS computational biology

Authors' code: gitlab.rlp.net/braincodepublished/neuronal-network-simulations-june-2021 (MIT)

Status: code verified, 72 files readable

[36308] doi:10.21203/rs.3.rs-2915547/v1 [paper, repository]

Two-dimensional population receptive field mapping of human primary somatosensory cortex

Journal: Research Square (preprint)

Authors' code: Zenodo 1299483 (other-open), justingardner/mrtools (other)

Status: code verified, 1,271 files readable

[36309] doi:10.3389/fcell.2023.1140554 [paper]

Developmentally regulated expression of integrin alpha-6 distinguishes neural crest derivatives in the skin.

Journal: Frontiers in cell and developmental biology

Status: data only

[36310] doi:10.3389/fcell.2023.1166808 [paper, data]

A high ratio of linoleic acid (n-6 PUFA) to alpha-linolenic acid (n-3 PUFA) adversely affects early stage of human neuronal differentiation and electrophysiological activity of glutamatergic neurons <i>in vitro</i>.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[36311] doi:10.3389/fnagi.2023.1138336 [paper, data]

The fusiform gyrus exhibits differential gene-gene co-expression in Alzheimer's disease.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[36312] doi:10.3389/fnins.2023.1170862 [paper, repository]

Source localization using recursively applied and projected MUSIC with flexible extent estimation.

Journal: Frontiers in neuroscience

Authors' code: lukethehecker/invert (no license)

Status: dead link

[36313] doi:10.3389/fnut.2023.1146804 [paper, data]

Calorie restriction and pravastatin administration during pregnancy in obese rhesus macaques modulates maternal and infant metabolism and infant brain and behavioral development.

Journal: Frontiers in nutrition

Status: data only, 1 dataset cited

[36314] doi:10.3389/fonc.2023.1156009 [paper, repository]

Development of a machine learning framework for radiation biomarker discovery and absorbed dose prediction.

Journal: Frontiers in oncology

Authors' code: brittalangen/mlradiobiomarkers (no license)

Status: code verified, 1 file readable, 2 matches

[36315] doi:10.3389/fphar.2023.1182803 [paper, data]

Integrated transcriptome and metabolome analysis to investigate the mechanism of intranasal insulin treatment in a rat model of vascular dementia.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[36316] doi:10.3389/fpsyg.2023.1167961 [paper, data]

Effects of neurofeedback on the self-concept of children with learning disorders.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[36317] doi:10.3390/brainsci13050803 [paper, repository]

Aberrant Multimodal Connectivity Pattern Involved in Default Mode Network and Limbic Network in Amyotrophic Lateral Sclerosis.

Journal: Brain sciences

Authors' code: nitrc.org/projects/gretna (no license)

Status: code verified

[36318] doi:10.7150/thno.81826 [paper, data]

Decreased miR-451a in cerebrospinal fluid, a marker for both cognitive impairment and depressive symptoms in Alzheimer's disease.

Journal: Theranostics

Status: data only, 1 dataset cited

[36319] doi:10.7554/elife.78392 [paper, repository]

Gain, not concomitant changes in spatial receptive field properties, improves task performance in a neural network attention model.

Journal: eLife

Authors' code: OSF aghqk (no license), Zenodo 1299497 (other-open), justingardner/mgl (GPL-2.0)

Status: code verified, 729 files readable, 2 matches

[36320] doi:10.7554/elife.80878 [paper, repository]

Toward a more informative representation of the fetal-neonatal brain connectome using variational autoencoder.

Journal: eLife

Authors' code: libilab/rsfMRI-VAE (no license)

Status: code verified, 137 files readable, 4 matches

[36321] doi:10.7554/elife.84797 [paper, repository]

Spatiotemporal neural dynamics of object recognition under uncertainty in humans.

Journal: eLife

Authors' code: BiyuHeLab/eLife_Wu2023 (no license)

Status: code verified, 44 files readable, 18 matches

[36322] doi:10.7554/elife.85117 [paper, repository]

Mating activates neuroendocrine pathways signaling hunger in <i>Drosophila</i> females.

Journal: eLife

Authors' code: mlaturney/FLIC_automated_group_assignment (MIT)

Status: code verified, 4 files readable, 2 matches

[36323] doi:10.7554/elife.85410 [paper, repository]

Neural mechanisms of parasite-induced summiting behavior in 'zombie' <i>Drosophila</i>.

Journal: eLife

Authors' code: de-Bivort-Lab/dblab-schematics (no license), lab.debivort.org/zombie-summiting (no license), Zenodo 7464925 (CC-BY-4.0)

Status: code verified, 1 file readable

[36324] doi:10.7554/elife.86299 [paper, data]

Two conserved vocal central pattern generators broadly tuned for fast and slow rates generate species-specific vocalizations in <i>Xenopus</i> clawed frogs.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 14 May 2023 (3 papers)

[36325] doi:10.1016/j.neuroimage.2023.120170 [paper, repository]

Cognitive and neural bases of visual-context-guided decision-making.

Journal: NeuroImage

Authors' code: OSF ud7yc (no license)

Status: dead link

[36326] doi:10.1186/s10020-023-00652-3 [paper, data]

CRISPR-cas9 screening identified lethal genes enriched in Hippo kinase pathway and of predictive significance in primary low-grade glioma.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 1 dataset cited

[36327] doi:10.3390/diagnostics13101738 [paper, data]

Automatic Diagnosis of Glaucoma from Retinal Images Using Deep Learning Approach.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 3 datasets cited

Saturday, 13 May 2023 (10 papers)

[36328] doi:10.1007/s00415-023-11764-5 [paper]

Presymptomatic grey matter alterations in ALS kindreds: a computational neuroimaging study of asymptomatic C9orf72 and SOD1 mutation carriers.

Journal: Journal of neurology

Status: code on request

[36329] doi:10.1016/j.celrep.2023.112506 [paper]

Pain-induced adaptations in the claustro-cingulate pathway.

Journal: Cell reports

Status: code on request

[36330] doi:10.1016/j.dib.2023.109236 [paper, data]

A dataset of [⁶⁸Ga]Ga-Pentixafor PET/CT images of patients with high-grade Glioma.

Journal: Data in brief

Status: data only, 3 datasets cited

[36331] doi:10.1016/j.isci.2023.106840 [paper]

Beat encoding at mistuned octaves within single electrosensory neurons.

Journal: iScience

Status: code on request

[36332] doi:10.1016/j.isci.2023.106868 [paper]

A Neuroligin-1 mutation associated with Alzheimer's disease produces memory and age-dependent impairments in hippocampal plasticity.

Journal: iScience

Status: code on request

[36333] doi:10.1016/j.isci.2023.106885 [paper, data]

Hippocampal output profoundly impacts the interpretation of tactile input patterns in SI cortical neurons.

Journal: iScience

Status: data only, 1 dataset cited

[36334] doi:10.1016/j.neuroimage.2023.120168 [paper, repository]

High-fidelity mesoscale in-vivo diffusion MRI through gSlider-BUDA and circular EPI with S-LORAKS reconstruction.

Journal: NeuroImage

Authors' code: CongyuLiao/BUDA_SLORAKS (no license)

Status: code verified, 31 files readable

[36335] doi:10.1016/j.nicl.2023.103432 [paper, data]

Parkinson's disease may disrupt overlapping subthalamic nucleus and pallidal motor networks.

Journal: NeuroImage. Clinical

Status: data only, 2 datasets cited

[36336] doi:10.3390/e25050794 [paper, repository]

An Entropy-Based Method with a New Benchmark Dataset for Chinese Textual Affective Structure Analysis.

Journal: Entropy (Basel, Switzerland)

Authors' code: SophonPlus/ChineseNlpCorpus (no license)

Status: code verified, 18 files readable

[36337] doi:10.3390/ijms24108721 [paper]

Somatosensory-Evoked Early Sharp Waves in the Neonatal Rat Hippocampus.

Journal: International journal of molecular sciences

Status: code on request

Friday, 12 May 2023 (28 papers)

[36338] doi:10.1007/s10548-023-00959-8 [paper, repository]

The Development of Cortical Responses to the Integration of Audiovisual Speech in Infancy.

Journal: Brain topography

Authors' code: speechAndBrains/fNIRS_tools (no license)

Status: code verified, 7 files readable, 2 matches

[36339] doi:10.1007/s10639-023-11837-y [paper, data]

A "fractal" expander-compressor-supplier formative research method on array processing.

Journal: Education and information technologies

Status: data only, 1 dataset cited

[36340] doi:10.1007/s11357-023-00811-8 [paper, repository]

Neurophysiological markers of successful learning in healthy aging.

Journal: GeroScience

Authors' code: OSF se8bf (no license)

Status: code verified, 19 files readable, 11 matches

[36341] doi:10.1016/j.dcn.2023.101255 [paper, repository]

Neurodevelopmental trajectories of letter and speech sound processing from preschool to the end of elementary school.

Journal: Developmental cognitive neuroscience

Authors' code: OSF fwm6r (no license)

Status: code verified, 4 files readable, 2 matches

[36342] doi:10.1016/j.isci.2023.106849 [paper, data]

Target enhancement but not distractor suppression in auditory neural tracking during continuous speech.

Journal: iScience

Status: code on request, 1 dataset cited

[36343] doi:10.1016/j.isci.2023.106859 [paper]

Mechanistic impacts of bacterial diet on dopaminergic neurodegeneration in a &lt;i&gt;Caenorhabditis elegans&lt;/i&gt; α-synuclein model of Parkinson's disease.

Journal: iScience

Status: code on request

[36344] doi:10.1016/j.neuroimage.2023.120166 [paper, repository]

Neural responses to reward valence and magnitude from pre- to early adolescence.

Journal: NeuroImage

Authors' code: OSF uzjfw (no license)

Status: code verified, 26 files readable, 2 matches

[36345] doi:10.1016/j.xpro.2023.102306 [paper, repository]

Protocol for precise signal synchronization of electrophysiology, videography, and audio recordings using a custom-made pulse generator.

Journal: STAR protocols

Authors' code: neurogelotology/synchronization_protocol (MIT)

Status: code verified, 14 files readable, 5 matches

[36346] doi:10.1038/s41420-023-01458-2 [paper]

N¹-Methyladenosine modification of mRNA regulates neuronal gene expression and oxygen glucose deprivation/reoxygenation induction.

Journal: Cell death discovery

Status: data only

[36347] doi:10.1038/s41467-023-38376-x [paper, repository]

Brain proteomic analysis implicates actin filament processes and injury response in resilience to Alzheimer's disease.

Journal: Nature communications

Authors' code: huangzhii/RAD (MIT)

Status: code verified, 3 files readable, 4 matches

[36348] doi:10.1038/s41598-023-34115-w [paper, repository]

Prediction of mammalian tissue-specific CLOCK-BMAL1 binding to E-box DNA motifs.

Journal: Scientific reports

Authors' code: BhattacharyaLab (no license)

Status: code verified

[36349] doi:10.1038/s41598-023-34895-1 [paper, repository]

Behavioral and oscillatory signatures of switch costs in highly proficient bilinguals.

Journal: Scientific reports

Authors' code: Polina418/Audio_processing (MIT)

Status: code verified, 3 files readable

[36350] doi:10.1093/braincomms/fcad147 [paper, repository]

Antemortem network analysis of spreading pathology in autopsy-confirmed frontotemporal degeneration.

Journal: Brain communications

Authors' code: dontminchenit/mBIN (BSD-3-Clause)

Status: code verified, 729 files readable, 3 matches

[36351] doi:10.1117/1.jbo.28.9.094803 [paper, data]

Development of a shortwave infrared sinuscope for the detection of cerebrospinal fluid leaks.

Journal: Journal of biomedical optics

Status: data only, 1 dataset cited

[36352] doi:10.1186/s12906-023-03970-5 [paper, data]

Kaixin Jieyu Granule attenuates neuroinflammation-induced depressive-like behavior through TLR4/PI3K/AKT/FOXO1 pathway: a study of network pharmacology and experimental validation.

Journal: BMC complementary medicine and therapies

Status: data only, 1 dataset cited

[36353] doi:10.1210/jendso/bvad061 [paper, repository]

Postprandial Increases in Liver-Gut Hormone LEAP2 Correlate with Attenuated Eating Behavior in Adults Without Obesity.

Journal: Journal of the Endocrine Society

Authors' code: Zenodo 7855555 (CC-BY-4.0)

Status: empty repository

[36354] doi:10.1371/journal.pcbi.1011081 [paper, repository]

Pupillary response is associated with the reset and switching of functional brain networks during salience processing.

Journal: PLoS computational biology

Authors' code: hehengda/EffectiveConnectivity_paper_code (MIT), taotu/VBLDS_Connectivity_EEG_fMRI (no license)

Status: code verified, 24 files readable, 9 matches

[36355] doi:10.1371/journal.pcbi.1011101 [paper, repository]

Learning to predict future locations with internally generated theta sequences.

Journal: PLoS computational biology

Authors' code: EloyPB/theta_sequence_models (no license)

Status: code verified, 28 files readable, 1 match

[36356] doi:10.3389/fimmu.2023.1182307 [paper, data]

Combined analysis of single-cell and bulk RNA sequencing reveals the expression patterns of circadian rhythm disruption in the immune microenvironment of Alzheimer's disease.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[36357] doi:10.3389/fnagi.2023.1090400 [paper, data]

The relationship between protein modified folding molecular network and Alzheimer's disease pathogenesis based on BAG2-HSC70-STUB1-MAPT expression patterns analysis.

Journal: Frontiers in aging neuroscience

Status: data only, 2 datasets cited

[36358] doi:10.3389/fncom.2023.1136985 [paper, repository]

Empirically validated theoretical analysis of visual-spatial perception under change of nervous system arousal.

Journal: Frontiers in computational neuroscience

Authors' code: pratik-purohit/modulation-visual-perception (Apache-2.0)

Status: code verified, 7 files readable, 2 matches

[36359] doi:10.3389/fnhum.2023.1164685 [paper, repository]

A schizophrenia study based on multi-frequency dynamic functional connectivity analysis of fMRI.

Journal: Frontiers in human neuroscience

Authors' code: zuoxinian/ccs (GPL-2.0)

Status: code verified, 732 files readable, 6 matches

[36360] doi:10.3389/fnins.2023.1170996 [paper, data]

Recent progress of the genetics of amyotrophic lateral sclerosis and challenges of gene therapy.

Journal: Frontiers in neuroscience

Status: data only, 6 datasets cited

[36361] doi:10.3389/fnins.2023.1173537 [paper, repository]

Analysis of circadian rhythm components in EEG/EMG data of aged mice.

Journal: Frontiers in neuroscience

Authors' code: tarotez/sleepstages (MIT)

Status: code verified, 119 files readable

[36362] doi:10.3390/ijms24108704 [paper, data]

Differential Functional Contribution of BK Channel Subunits to Aldosterone-Induced Channel Activation in Vascular Smooth Muscle and Eventual Cerebral Artery Dilation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[36363] doi:10.5194/mr-4-115-2023 [paper, repository]

Time-domain proton-detected local-field NMR for molecular structure determination in complex lipid membranes.

Journal: Magnetic resonance (Gottingen, Germany)

Authors' code: tfmFerreira/inhomogeneous-rf-nmr (GPL-2.0), Zenodo 7898743 (CC-BY-4.0)

Status: code verified, 6 files readable

[36364] doi:10.7554/elife.85779 [paper, data]

APOE expression and secretion are modulated by mitochondrial dysfunction.

Journal: eLife

Status: data only, 2 datasets cited

[36365] doi:10.7554/elife.85847 [paper, data]

Oxytocin administration enhances pleasantness and neural responses to gentle stroking but not moderate pressure social touch by increasing peripheral concentrations.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 11 May 2023 (37 papers)

[36366] doi:10.1002/brb3.3008 [paper, repository]

Conflict in a word-based approach-avoidance task is stronger with positive words.

Journal: Brain and behavior

Authors' code: OSF 73pmw (no license)

Status: code found, still to be checked

[36367] doi:10.1016/j.crmeth.2023.100477 [paper]

A conditional strategy for cell-type-specific labeling of endogenous excitatory synapses in <i>Drosophila</i>.

Journal: Cell reports methods

Status: code on request

[36368] doi:10.1016/j.dcn.2023.101254 [paper, repository]

Music impacts brain cortical microstructural maturation in very preterm infants: A longitudinal diffusion MR imaging study.

Journal: Developmental cognitive neuroscience

Authors' code: fsl.fmrib.ox.ac.uk/fsl/fslwiki (no license), git.fmrib.ox.ac.uk/matteob/dhcp_neo_dmri_pipeline_release (no license)

Status: code verified

[36369] doi:10.1016/j.jbc.2023.104811 [paper]

Orthogonal approaches required to measure proteasome composition and activity in mammalian brain tissue.

Journal: The Journal of biological chemistry

Status: code on request

[36370] doi:10.1016/j.stemcr.2023.04.007 [paper]

Regulation of neural stem cell differentiation and brain development by MGAT5-mediated N-glycosylation.

Journal: Stem cell reports

Status: code on request

[36371] doi:10.1021/acsomega.3c01156 [paper, data]

Design and Synthesis of 2-(4-Bromophenyl)Quinoline-4-Carbohydrazide Derivatives <i>via</i> Molecular Hybridization as Novel Microbial DNA-Gyrase Inhibitors.

Journal: ACS omega

Status: data only, 1 dataset cited

[36372] doi:10.1038/s41420-023-01451-9 [paper, data]

BLM helicase overexpressed in human gliomas contributes to diverse responses of human glioma cells to chemotherapy.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[36373] doi:10.1038/s41467-023-38253-7 [paper, repository]

Spectro-spatial features in distributed human intracranial activity proactively encode peripheral metabolic activity.

Journal: Nature communications

Authors' code: dancingdarwin/cgm-decoder (no license)

Status: code verified, 5 files readable, 2 matches

[36374] doi:10.1038/s41467-023-38340-9 [paper, repository]

Vesicular glutamate transporters are H⁺-anion exchangers that operate at variable stoichiometry.

Journal: Nature communications

Authors' code: jugit.fz-juelich.de/computational-neurophysiology/variable-coupling-vglut (no license)

Status: code verified

[36375] doi:10.1038/s41467-023-38373-0 [paper, data]

Neonatal immune challenge poses a sex-specific risk for epigenetic microglial reprogramming and behavioral impairment.

Journal: Nature communications

Status: data only, 1 dataset cited

[36376] doi:10.1038/s41467-023-38418-4 [paper, repository]

Task-specific modulation of corticospinal neuron activity during motor learning in mice.

Journal: Nature communications

Authors' code: doi:10.12751/g-node.sbrmy3 (no license)

Status: code verified

[36377] doi:10.1038/s41592-023-01871-6 [paper, repository]

Cross-modality supervised image restoration enables nanoscale tracking of synaptic plasticity in living mice.

Journal: Nature methods

Authors' code: yxu233/Xu_and_Graves_XTC_syn_tracking (MIT), codeocean:8379773 (no license)

Status: code verified, 18 files readable, 4 matches

[36378] doi:10.1038/s41593-023-01326-3 [paper, data]

ARG1-expressing microglia show a distinct molecular signature and modulate postnatal development and function of the mouse brain.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[36379] doi:10.1038/s41598-023-34325-2 [paper, data]

A CRISPR-engineered isogenic model of the 22q11.2 A-B syndromic deletion.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36380] doi:10.1038/s41598-023-34596-9 [paper, data]

Identification of three elevenin receptors and roles of elevenin disulfide bond and residues in receptor activation in Aplysia californica.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36381] doi:10.1038/s41598-023-34731-6 [paper, repository]

Distinct nonlinear spectrotemporal integration in primary and secondary auditory cortices.

Journal: Scientific reports

Authors' code: cortex-lab/Suite2P (other)

Status: code verified, 217 files readable, 3 matches

[36382] doi:10.1038/s42003-023-04855-6 [paper, data]

Neuronal selectivity for stimulus information determines prefrontal LFP gamma power regardless of task execution.

Journal: Communications biology

Status: data only, 1 dataset cited

[36383] doi:10.1038/s43018-023-00556-5 [paper, data]

GAP43-dependent mitochondria transfer from astrocytes enhances glioblastoma tumorigenicity.

Journal: Nature cancer

Status: data only, 2 datasets cited

[36384] doi:10.1088/1741-2552/acd0d7 [paper, repository]

3D printed guide tube system for acute Neuropixels probe recordings in non-human primates.

Journal: Journal of neural engineering

Authors' code: cortex-lab/spikes (no license)

Status: code verified, 105 files readable

[36385] doi:10.1111/acel.13864 [paper]

GM-CSF and IL-7 fusion cytokine engineered tumor vaccine generates long-term Th-17 memory cells and increases overall survival in aged syngeneic mouse models of glioblastoma.

Journal: Aging cell

Status: code on request

[36386] doi:10.1186/s13073-023-01186-3 [paper, data]

Sex differences in the polygenic architecture of hearing problems in adults.

Journal: Genome medicine

Status: data only, 3 datasets cited

[36387] doi:10.1371/journal.pcbi.1010866 [paper, repository]

Noise improves the association between effects of local stimulation and structural degree of brain networks.

Journal: PLoS computational biology

Authors' code: Yibh22/noise-influences-stimulation-effects (no license)

Status: code verified, 5 files readable, 2 matches

[36388] doi:10.1371/journal.pone.0282967 [paper, data]

EEG signature of breaks in embodiment in VR.

Journal: PloS one

Status: data only, 1 dataset cited

[36389] doi:10.21037/tcr-22-2715 [paper, data]

Identification of key genes in HER2-positive breast cancer with brain metastasis via bioinformatics methods.

Journal: Translational cancer research

Status: data only, 1 dataset cited

[36390] doi:10.3389/fnins.2023.1152926 [paper]

Losses resulting from deliberate exploration trigger beta oscillations in frontal cortex.

Journal: Frontiers in neuroscience

Status: code on request

[36391] doi:10.3389/fnins.2023.1176654 [paper]

Single-nucleus transcriptome analysis reveals transcriptional profiles of circadian clock and pain related genes in human and mouse trigeminal ganglion.

Journal: Frontiers in neuroscience

Status: data only

[36392] doi:10.3390/bioengineering10050581 [paper, repository]

Multimodal Stereotactic Brain Tumor Segmentation Using 3D-Znet.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: SOCR/DL_ZNet_3D_BrainSeg (no license)

Status: code verified, 4 files readable, 1 match

[36393] doi:10.3390/biom13050819 [paper, data]

ASC Transporters Mediate D-Serine Transport into Astrocytes Adjacent to Synapses in the Mouse Brain.

Journal: Biomolecules

Status: data only, 1 dataset cited

[36394] doi:10.3390/cells12101368 [paper, data]

Toll-like Receptor 4 Is Upregulated in Parkinson's Disease Patients and Co-Localizes with pSer129αSyn: A Possible Link with the Pathology.

Journal: Cells

Status: data only, 1 dataset cited

[36395] doi:10.3390/ijms24108585 [paper, repository]

Asymmetric Presynaptic Depletion of Dopamine Neurons in a &lt;i&gt;Drosophila&lt;/i&gt; Model of Parkinson's Disease.

Journal: International journal of molecular sciences

Authors' code: takashi310/VVD_Viewer (MIT)

Status: code verified, 1,333 files readable

[36396] doi:10.3390/s23104680 [paper, repository]

Method for Automatic Estimation of Instantaneous Frequency and Group Delay in Time-Frequency Distributions with Application in EEG Seizure Signals Analysis.

Journal: Sensors (Basel, Switzerland)

Authors' code: nabeelalikhan1/EEG-Classification-IF-and-GD-features (no license)

Status: code verified, 7 files readable, 1 match

[36397] doi:10.34133/cbsystems.0026 [paper, repository]

A Heuristically Accelerated Reinforcement Learning-Based Neurosurgical Path Planner.

Journal: Cyborg and bionic systems (Washington, D.C.)

Authors' code: supp:PMC10204738/cbsystems.0026.f1.zip (no license)

Status: code verified, 1 file readable

[36398] doi:10.7554/elife.77690 [paper, repository]

Interplay between external inputs and recurrent dynamics during movement preparation and execution in a network model of motor cortex.

Journal: eLife

Authors' code: lbachromano/m1_preparatory_movement_representation (CC0-1.0)

Status: code verified, 18 files readable

[36399] doi:10.7554/elife.84024 [paper, repository]

Using light and X-ray scattering to untangle complex neuronal orientations and validate diffusion MRI.

Journal: eLife

Authors' code: 3d-pli/SLIX (MIT), NYU-DiffusionMRI/DESIGNER (MIT)

Status: code verified, 80 files readable, 5 matches

[36400] doi:10.7554/elife.84041 [paper, repository]

Two forms of asynchronous release with distinctive spatiotemporal dynamics in central synapses.

Journal: eLife

Authors' code: gmalagonv/2-forms-of-asynchronous-release (no license)

Status: code verified, 100 files readable

[36401] doi:10.7554/elife.84760 [paper, repository]

Development of frequency tuning shaped by spatial cue reliability in the barn owl's auditory midbrain.

Journal: eLife

Authors' code: doi:10.12751/g-node.p52i4s (no license)

Status: code verified

[36402] doi:10.7554/elife.85041 [paper, repository]

&lt;i&gt;retro&lt;/i&gt;-Tango enables versatile retrograde circuit tracing in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: eLife

Authors' code: anthonycrown/retrotango (no license)

Status: code verified, 1 file readable, 1 match

Wednesday, 10 May 2023 (33 papers)

[36403] doi:10.1002/advs.202300366 [paper, data]

DeDoc2 Identifies and Characterizes the Hierarchy and Dynamics of Chromatin TAD-Like Domains in the Single Cells.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[36404] doi:10.1002/hbm.26305 [paper, repository]

Cortical haemodynamic responses predict individual ability to recognise vocal emotions with uninformative pitch cues but do not distinguish different emotions.

Journal: Human brain mapping

Authors' code: OSF 352qc (no license)

Status: code verified, 11 files readable, 8 matches

[36405] doi:10.1002/hbm.26322 [paper]

Feasibility of diffusion-tensor and correlated diffusion imaging for studying white-matter microstructural abnormalities: Application in COVID-19.

Journal: Human brain mapping

Status: code on request

[36406] doi:10.1016/j.bas.2023.101751 [paper]

Demineralized cortical fibers are associated with a low pseudarthrosis rate in patients undergoing surgery for adult spinal deformity without three-column osteotomy.

Journal: Brain & spine

Status: code on request

[36407] doi:10.1016/j.celrep.2023.112482 [paper, data]

The rich non-coding RNA landscape of the Drosophila antenna.

Journal: Cell reports

Status: code on request, 1 dataset cited

[36408] doi:10.1016/j.nicl.2023.103431 [paper]

Magnetoencephalography to measure the effect of contact point-specific deep brain stimulation in Parkinson's disease: A proof of concept study.

Journal: NeuroImage. Clinical

Status: code on request

[36409] doi:10.1038/s41467-023-38432-6 [paper, data]

Multiplatform molecular profiling uncovers two subgroups of malignant peripheral nerve sheath tumors with distinct therapeutic vulnerabilities.

Journal: Nature communications

Status: code on request, 4 datasets cited

[36410] doi:10.1038/s41531-023-00515-y [paper, repository]

Shared molecular genetic factors influence subcortical brain morphometry and Parkinson's disease risk.

Journal: NPJ Parkinson's disease

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable

[36411] doi:10.1038/s41597-023-02181-4 [paper, repository]

M4Raw: A multi-contrast, multi-repetition, multi-channel MRI k-space dataset for low-field MRI research.

Journal: Scientific data

Authors' code: mylyu/M4Raw (CC-BY-4.0)

Status: code verified, 33 files readable, 7 matches

[36412] doi:10.1038/s43856-023-00295-9 [paper, repository]

Integrated algorithm combining plasma biomarkers and cognitive assessments accurately predicts brain β-amyloid pathology.

Journal: Communications medicine

Authors' code: WXDX-DA/AbetaPrediction (GPL-3.0), Zenodo 7844160 (other-open)

Status: code verified, 14 files readable, 2 matches

[36413] doi:10.1098/rsbl.2023.0099 [paper, repository]

Sparse spike trains and the limitation of rate codes underlying rapid behaviours.

Journal: Biology letters

Authors' code: doi:10.6084/m9.figshare.c.6620278 (no license)

Status: code found, still to be checked

[36414] doi:10.1098/rsob.220121 [paper, repository]

Delay eyeblink conditioning performance and brain-wide c-Fos expression in male and female mice.

Journal: Open biology

Authors' code: BaduraLab/DLC_analysis (no license), BaduraLab/cell-counting (no license), cortex-lab/allenccf (no license), BaduraLab (no license), BaduraLab/Eyeblink (no license), doi:10.6084/m9.figshare.c.6619748 (no license)

Status: code verified, 142 files readable, 5 matches

[36415] doi:10.1098/rsob.230049 [paper, repository]

Low-nutrient diet in <i>Drosophila</i> larvae stage causes enhancement in dopamine modulation in adult brain due epigenetic imprinting.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.6626093 (no license)

Status: code found, still to be checked

[36416] doi:10.1098/rspb.2023.0260 [paper, repository]

The more numerous the longer: how the integration between numerosity and time leads to a common neural response.

Journal: Proceedings. Biological sciences

Authors' code: OSF ud5sm (no license), doi:10.6084/m9.figshare.c.6617706 (no license)

Status: code verified, 6 files readable, 1 match

[36417] doi:10.1126/sciadv.ade4443 [paper]

Functional neuronal circuits promote disease progression in cancer.

Journal: Science advances

Status: data only

[36418] doi:10.1186/s12864-023-09354-w [paper, data]

The landscape of the long non-coding RNAs in developing mouse retinas.

Journal: BMC genomics

Status: data only, 5 datasets cited

[36419] doi:10.1186/s13014-023-02262-z [paper, data]

Linear accelerator-based stereotactic radiotherapy for brain metastases, including multiple and large lesions, carries a low incidence of acute toxicities: a retrospective analysis.

Journal: Radiation oncology (London, England)

Status: data only, 1 dataset cited

[36420] doi:10.1186/s41232-023-00277-3 [paper, data]

Neuroinflammation in Alzheimer's disease: microglial signature and their relevance to disease.

Journal: Inflammation and regeneration

Status: data only, 5 datasets cited

[36421] doi:10.1371/journal.pone.0285488 [paper, repository]

Effective encoder-decoder neural network for segmentation of orbital tissue in computed tomography images of Graves' orbitopathy patients.

Journal: PloS one

Authors' code: tkdgur658/OTSNet (GNU)

Status: empty repository, 1 file readable

[36422] doi:10.1523/eneuro.0447-22.2023 [paper, repository]

Effect of Reverberation on Neural Responses to Natural Speech in Rabbit Auditory Midbrain: No Evidence for a Neural Dereverberation Mechanism.

Journal: eNeuro

Authors' code: odedbarz/RevPublish (no license)

Status: code verified, 446 files readable, 19 matches

[36423] doi:10.18632/aging.204712 [paper, data]

The prognostic significance and immune correlation of SLC10A3 in low-grade gliomas revealed by bioinformatic analysis and multiple immunohistochemistry.

Journal: Aging

Status: data only, 5 datasets cited

[36424] doi:10.3389/fnbeh.2023.1094226 [paper, repository]

Mnemonic representations in human lateral geniculate nucleus.

Journal: Frontiers in behavioral neuroscience

Authors' code: OSF ezn9j (no license), clayspacelab/iEye (no license)

Status: code verified, 117 files readable, 5 matches

[36425] doi:10.3389/fnins.2023.1145092 [paper, repository]

N6-methyladenosine participates in mouse hippocampus neurodegeneration via PD-1/PD-L1 pathway.

Journal: Frontiers in neuroscience

Authors' code: YuLab-SMU/clusterProfiler (no license)

Status: code verified, 91 files readable

[36426] doi:10.3389/fnmol.2023.1152279 [paper]

Identification of biomarkers differentiating Alzheimer's disease from other neurodegenerative diseases by integrated bioinformatic analysis and machine-learning strategies.

Journal: Frontiers in molecular neuroscience

Status: data only

[36427] doi:10.3389/fped.2023.1090084 [paper, data]

Analysis and comparisons of gene expression changes in patient- derived neurons from ROHHAD, CCHS, and PWS.

Journal: Frontiers in pediatrics

Status: data only, 1 dataset cited

[36428] doi:10.3389/fphys.2023.1171467 [paper, data]

DynamicSleepNet: a multi-exit neural network with adaptive inference time for sleep stage classification.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[36429] doi:10.3390/brainsci13050780 [paper, repository]

FB-CCNN: A Filter Bank Complex Spectrum Convolutional Neural Network with Artificial Gradient Descent Optimization.

Journal: Brain sciences

Authors' code: drive.google.com/drive/folders (no license)

Status: code verified

[36430] doi:10.3390/diagnostics13101690 [paper, data]

Fetal Health State Detection Using Interval Type-2 Fuzzy Neural Networks.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[36431] doi:10.3390/jintelligence11050090 [paper, repository]

The Structure of Cognitive Abilities and Associations with Problem Behaviors in Early Adolescence: An Analysis of Baseline Data from the Adolescent Brain Cognitive Development Study.

Journal: Journal of Intelligence

Authors' code: OSF nam56 (no license)

Status: code verified, 2 files readable, 4 matches

[36432] doi:10.3390/jpm13050808 [paper, data]

Development of Predictive Models for the Response of Vestibular Schwannoma Treated with Cyberknife^®: A Feasibility Study Based on Radiomics and Machine Learning.

Journal: Journal of personalized medicine

Status: data only, 2 datasets cited

[36433] doi:10.3390/ph16050726 [paper]

<i>RYK</i> Gene Expression Associated with Drug Response Variation of Temozolomide and Clinical Outcomes in Glioma Patients.

Journal: Pharmaceuticals (Basel, Switzerland)

Status: data only

[36434] doi:10.7554/elife.81681 [paper, data]

Early language exposure affects neural mechanisms of semantic representations.

Journal: eLife

Status: data only, 2 datasets cited

[36435] doi:10.7554/elife.85108 [paper, repository]

Large-scale electrophysiology and deep learning reveal distorted neural signal dynamics after hearing loss.

Journal: eLife

Authors' code: nicklesica/dnn (MIT)

Status: code verified, 26 files readable, 1 match

Tuesday, 9 May 2023 (24 papers)

[36436] doi:10.1016/j.isci.2023.106839 [paper]

Molecular signaling from microglia impacts macroglia autophagy and neurons survival in glaucoma.

Journal: iScience

Status: code on request

[36437] doi:10.1016/j.isci.2023.106845 [paper]

Neural oscillation amplitude in the frontal cortex predicts esport results.

Journal: iScience

Status: code found, still to be checked

[36438] doi:10.1016/j.neuroimage.2023.120116 [paper, repository]

Stability, change, and reliable individual differences in electroencephalography measures: A lifespan perspective on progress and opportunities.

Journal: NeuroImage

Authors' code: Zenodo 998965 (CC-BY-4.0)

Status: code verified

[36439] doi:10.1016/j.neuron.2023.04.013 [paper, repository]

Reinstating olfactory bulb-derived limbic gamma oscillations alleviates depression-like behavioral deficits in rodents.

Journal: Neuron

Authors' code: Zenodo 7814287 (other-open)

Status: code verified, 2 files readable

[36440] doi:10.1021/acscentsci.2c01468 [paper, repository]

Interpretable Machine Learning on Metabolomics Data Reveals Biomarkers for Parkinson's Disease.

Journal: ACS central science

Authors' code: CRANK-MS (no license)

Status: code verified

[36441] doi:10.1038/s41398-023-02450-1 [paper, data]

The association between gut microbiota and postoperative delirium in patients.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[36442] doi:10.1038/s41467-023-38352-5 [paper, data]

Structural mechanism of human oncochannel TRPV6 inhibition by the natural phytoestrogen genistein.

Journal: Nature communications

Status: data only, 2 datasets cited

[36443] doi:10.1038/s41597-023-02158-3 [paper, repository]

Quantitative Mass Spectrometry Analysis of Cerebrospinal Fluid Protein Biomarkers in Alzheimer's Disease.

Journal: Scientific data

Authors' code: edammer/parANOVA (MIT)

Status: code verified, 4 files readable, 3 matches

[36444] doi:10.1155/2023/9020854 [paper, repository]

Characterizing White Matter Changes along Fibers in Treatment-Naive Pediatric Posttraumatic Stress Disorder.

Journal: Depression and anxiety

Authors' code: jyeatman/AFQ (gnu)

Status: code verified, 165 files readable, 3 matches

[36445] doi:10.1186/s12885-023-10883-6 [paper]

ZDHHC15 promotes glioma malignancy and acts as a novel prognostic biomarker for patients with glioma.

Journal: BMC cancer

Status: data only

[36446] doi:10.1186/s12906-023-03983-0 [paper, data]

Deciphering the pharmacological mechanisms of Fraxini Cortex for ulcerative colitis treatment based on network pharmacology and in vivo studies.

Journal: BMC complementary medicine and therapies

Status: data only, 2 datasets cited

[36447] doi:10.1186/s13062-023-00372-y [paper, repository]

Transcriptional diversity in specific synaptic gene sets discriminates cortical neuronal identity.

Journal: Biology direct

Authors' code: Hjerling-Leffler-Lab/SynGO_scRNAseq (no license)

Status: code verified, 12 files readable, 8 matches

[36448] doi:10.1186/s13148-023-01498-6 [paper, repository]

CRISPR-Cas9 knockout screen identifies novel treatment targets in childhood high-grade glioma.

Journal: Clinical epigenetics

Authors' code: sourceforge.net/mageck (no license)

Status: code verified

[36449] doi:10.1186/s13636-023-00286-7 [paper]

Explicit-memory multiresolution adaptive framework for speech and music separation.

Journal: EURASIP journal on audio, speech, and music processing

Status: code on request

[36450] doi:10.3389/fcell.2023.1084245 [paper, data]

Deficiency of <i>Wdr60</i> and <i>Wdr34</i> cause distinct neural tube malformation phenotypes in early embryos.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[36451] doi:10.3389/fnins.2023.1166010 [paper, data]

A comprehensive analysis of the hub genes for oxidative stress in ischemic stroke.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[36452] doi:10.3389/fphar.2023.1123387 [paper, repository]

Modulation of gut microbiota alleviates cerebral ischemia/reperfusion injury in rats by inhibiting M1 polarization of microglia.

Journal: Frontiers in pharmacology

Authors' code: code.google.com/p/ea-utils (no license)

Status: code verified

[36453] doi:10.3389/fphys.2023.1167148 [paper, data]

Correspondence between BOLD fMRI task response and cerebrovascular reactivity across the cerebral cortex.

Journal: Frontiers in physiology

Status: data only, 2 datasets cited

[36454] doi:10.3389/fpsyt.2023.1164208 [paper, data]

Transcranial direct-current stimulation enhances Pavlovian tendencies during intermittent loss of control.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[36455] doi:10.3390/cells12101352 [paper, data]

Live Cell Imaging of ATP Levels Reveals Metabolic Compartmentalization within Motoneurons and Early Metabolic Changes in &lt;i&gt;FUS&lt;/i&gt; ALS Motoneurons.

Journal: Cells

Status: data only, 1 dataset cited

[36456] doi:10.3390/s23104598 [paper, repository]

NeuronAlg: An Innovative Neuronal Computational Model for Immunofluorescence Image Segmentation.

Journal: Sensors (Basel, Switzerland)

Authors' code: zhixuhao/unet (MIT), yijingru/KG_Instance_Segmentation (no license), matterport/Mask_RCNN (MIT)

Status: code verified, 41 files readable, 2 matches

[36457] doi:10.7554/elife.81197 [paper, repository]

Human endogenous oxytocin and its neural correlates show adaptive responses to social touch based on recent social context.

Journal: eLife

Authors' code: doi:10.5061/dryad.zpc866td0 (no license), Zenodo 7805561 (eupl-1.1)

Status: code verified, 1 file readable

[36458] doi:10.7554/elife.81992 [paper, data]

Motor cortex analogue neurons in songbirds utilize Kv3 channels to generate ultranarrow spikes.

Journal: eLife

Status: data only, 1 dataset cited

[36459] doi:10.7554/elife.82412 [paper, repository]

Ultrafast (400 Hz) network oscillations induced in mouse barrel cortex by optogenetic activation of thalamocortical axons.

Journal: eLife

Authors' code: aricagmon/JBSI-codes (MIT)

Status: code verified, 3 files readable

Monday, 8 May 2023 (32 papers)

[36460] doi:10.1016/j.isci.2023.106835 [paper]

The temporal pattern of synaptic activation determines the longevity of structural plasticity at dendritic spines.

Journal: iScience

Status: code on request

[36461] doi:10.1016/j.ynirp.2023.100173 [paper, data]

Perceiving visual negative stimuli in schizophrenia and bipolar disorder: Meta-analytic evidence of a common altered thalamic-parahippocampal-basal ganglia circuit.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

[36462] doi:10.1021/acschemneuro.3c00127 [paper, data]

Gut Microbiome-Brain Alliance: A Landscape View into Mental and Gastrointestinal Health and Disorders.

Journal: ACS chemical neuroscience

Status: data only, 7 datasets cited

[36463] doi:10.1038/s41398-023-02446-x [paper, data]

Glycosylation and behavioral symptoms in neurological disorders.

Journal: Translational psychiatry

Status: data only, 3 datasets cited

[36464] doi:10.1038/s41467-023-37702-7 [paper, data]

Lipid flipping in the omega-3 fatty-acid transporter.

Journal: Nature communications

Status: data only, 1 dataset cited

[36465] doi:10.1038/s41587-023-01747-2 [paper, repository]

Multimodal spatiotemporal phenotyping of human retinal organoid development.

Journal: Nature biotechnology

Authors' code: jvendrow/fnnls (MIT), quadbiolab/spatial_multimodal_retinal_organoid (no license)

Status: code verified, 51 files readable, 40 matches

[36466] doi:10.1038/s41598-023-34298-2 [paper, repository]

Comparing resting state and task-based EEG using machine learning to predict vulnerability to depression in a non-clinical population.

Journal: Scientific reports

Authors' code: kaushik-pallavi/scripts_vulnerabilityToDepression (no license)

Status: empty repository, 1 file readable

[36467] doi:10.1038/s42003-023-04838-7 [paper, repository]

Automatic landmarking identifies new loci associated with face morphology and implicates Neanderthal introgression in human nasal shape.

Journal: Communications biology

Authors' code: faceplusplus.com (no license), figshare 19728916 (CC-BY-4.0)

Status: code verified

[36468] doi:10.1073/pnas.2210991120 [paper, repository]

Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: rr1859/AAmpD (MIT)

Status: code verified, 6 files readable

[36469] doi:10.1073/pnas.2216798120 [paper, repository]

Mapping human brain charts cross-sectionally and longitudinally.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: mdibiase1/Predict_Rate_of_Change (no license)

Status: code verified, 7 files readable

[36470] doi:10.1073/pnas.2217635120 [paper, repository]

MWF of the corpus callosum is a robust measure of remyelination: Results from the ReBUILD trial.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: datadryad.org/stash/share/vyuqw-7m0mq_edxzxs-_cmpneophc4oshvhkfa1sixq (no license)

Status: code verified

[36471] doi:10.1073/pnas.2218782120 [paper, repository]

Country-level gender inequality is associated with structural differences in the brains of women and men.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: zugmana/CLGI (no license), zugmana/CLGI5 (no license)

Status: code verified, 3 files readable, 1 match

[36472] doi:10.1073/pnas.2219341120 [paper, repository]

A proprioceptive feedback circuit drives <i>Caenorhabditis elegans</i> locomotor adaptation through dopamine signaling.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 7084660 (MIT)

Status: code verified

[36473] doi:10.1073/pnas.2220353120 [paper, data]

Anterior cingulate cortex orexin signaling mediates early-life stress-induced social impairment in females.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36474] doi:10.1073/pnas.2220551120 [paper, data]

Circadian clock protein BMAL1 broadly influences autophagy and endolysosomal function in astrocytes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36475] doi:10.1101/gr.277581.122 [paper]

Dynamic modulation of genomic enhancer elements in the suprachiasmatic nucleus, the site of the mammalian circadian clock.

Journal: Genome research

Status: data only

[36476] doi:10.1111/cns.14256 [paper]

LIPUS-SCs-Exo promotes peripheral nerve regeneration in cavernous nerve crush injury-induced ED rats via PI3K/Akt/FoxO signaling pathway.

Journal: CNS neuroscience & therapeutics

Status: data only

[36477] doi:10.1117/1.nph.10.4.044302 [paper, repository]

Pupil engineering for extended depth-of-field imaging in a fluorescence miniscope.

Journal: Neurophotonics

Authors' code: bu-cisl/EDoF-Miniscope (no license)

Status: code verified, 20 files readable, 4 matches

[36478] doi:10.1172/jci.insight.165715 [paper, repository]

Polarized localization of phosphatidylserine in the endothelium regulates Kir2.1.

Journal: JCI insight

Authors' code: claireruddiman/Spatial-Distribution (no license)

Status: code verified, 9 files readable, 3 matches

[36479] doi:10.1172/jci.insight.168448 [paper]

Aging alters mechanisms underlying voluntary movements in spinal motor neurons of mice, primates, and humans.

Journal: JCI insight

Status: data only

[36480] doi:10.1186/s12974-023-02786-x [paper, data]

SARS-CoV-2 envelope protein triggers depression-like behaviors and dysosmia via TLR2-mediated neuroinflammation in mice.

Journal: Journal of neuroinflammation

Status: data only, 3 datasets cited

[36481] doi:10.1186/s40478-023-01550-9 [paper, data]

TSPO acts as an immune resistance gene involved in the T cell mediated immune control of glioblastoma.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[36482] doi:10.1186/s40478-023-01558-1 [paper, data]

ER stress induced immunopathology involving complement in CADASIL: implications for therapeutics.

Journal: Acta neuropathologica communications

Status: data only, 6 datasets cited

[36483] doi:10.1186/s40708-023-00190-y [paper, repository]

Classification of age groups and task conditions provides additional evidence for differences in electrophysiological correlates of inhibitory control across the lifespan.

Journal: Brain informatics

Authors' code: christiangoelz/ML_selective_attention (no license)

Status: code verified, 8 files readable, 2 matches

[36484] doi:10.1186/s40708-023-00191-x [paper, repository]

BOARD-FTD-PACC: a graphical user interface for the synaptic and cross-frequency analysis derived from neural signals.

Journal: Brain informatics

Authors' code: gucecile/BOARD_FTD_PACC (no license)

Status: code verified, 40 files readable

[36485] doi:10.1364/boe.486507 [paper]

DIRECT, a low-cost system for high-speed, low-noise imaging of fluorescent bio-samples.

Journal: Biomedical optics express

Status: code on request

[36486] doi:10.1371/journal.pbio.3002106 [paper, data]

Phosphorylation of PSD-95 at serine 73 in dCA1 is required for extinction of contextual fear.

Journal: PLoS biology

Status: data only, 1 dataset cited

[36487] doi:10.1371/journal.pbio.3002120 [paper, data]

Feedback information transfer in the human brain reflects bistable perception in the absence of report.

Journal: PLoS biology

Status: data only, 1 dataset cited

[36488] doi:10.1523/eneuro.0488-22.2023 [paper]

Correlated Somatosensory Input in Parvalbumin/Pyramidal Cells in Mouse Motor Cortex.

Journal: eNeuro

Status: code on request

[36489] doi:10.15252/embr.202256467 [paper, data]

Reduced binding of apoE4 to complement factor H promotes amyloid-β oligomerization and neuroinflammation.

Journal: EMBO reports

Status: data only, 2 datasets cited

[36490] doi:10.3390/diagnostics13091654 [paper, data]

Automatic Analysis of MRI Images for Early Prediction of Alzheimer's Disease Stages Based on Hybrid Features of CNN and Handcrafted Features.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[36491] doi:10.3390/s23094559 [paper, repository]

A Systematic Comparison of High-End and Low-Cost EEG Amplifiers for Concealed, Around-the-Ear EEG Recordings.

Journal: Sensors (Basel, Switzerland)

Authors' code: MKnierim/openbci-vs-smarting-timing-test (no license), xdf-modules/pyxdf (BSD-2-Clause)

Status: code verified, 23 files readable, 3 matches

Sunday, 7 May 2023 (5 papers)

[36492] doi:10.1002/acn3.51743 [paper, data]

Exosomal circ-AHCY promotes glioblastoma cell growth via Wnt/β-catenin signaling pathway.

Journal: Annals of clinical and translational neurology

Status: data only, 1 dataset cited

[36493] doi:10.1007/s00401-023-02583-z [paper, repository]

Brain DNA methylomic analysis of frontotemporal lobar degeneration reveals OTUD4 in shared dysregulated signatures across pathological subtypes.

Journal: Acta neuropathologica

Authors' code: ds420/CETYGO (Artistic-2.0)

Status: code verified, 12 files readable, 4 matches

[36494] doi:10.1038/s41598-023-33973-8 [paper, repository]

Resting-state oscillations reveal disturbed excitation-inhibition ratio in Alzheimer's disease patients.

Journal: Scientific reports

Authors' code: figshare 11781767 (no license), annevannifterick/fEI_in_AD (no license)

Status: code verified, 6 files readable, 1 match

[36495] doi:10.3390/brainsci13050770 [paper, repository]

Machine Learning on Visibility Graph Features Discriminates the Cognitive Event-Related Potentials of Patients with Early Alzheimer's Disease from Healthy Aging.

Journal: Brain sciences

Authors' code: jesbu1/ML-Visibility-Graphs-for-Alzheimers (no license)

Status: code verified, 3 files readable, 8 matches

[36496] doi:10.3390/s23094543 [paper, data]

Saliency Map and Deep Learning in Binary Classification of Brain Tumours.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 6 May 2023 (19 papers, 16 on this page)

[36497] doi:10.1002/hbm.26326 [paper, data]

Young versus older subject diffusion magnetic resonance imaging data for virtual white matter lesion tractography.

Journal: Human brain mapping

Status: code on request, 1 dataset cited

[36498] doi:10.1007/s11011-023-01210-w [paper, data]

Neurometabolic changes in a rat pup model of type C hepatic encephalopathy depend on age at liver disease onset.

Journal: Metabolic brain disease

Status: data only, 1 dataset cited

[36499] doi:10.1016/j.celrep.2023.112486 [paper, repository]

Glial progenitor heterogeneity and key regulators revealed by single-cell RNA sequencing provide insight to regeneration in spinal cord injury.

Journal: Cell reports

Authors' code: velocyto-team/velocyto.R (no license)

Status: code verified, 6 files readable, 1 match

[36500] doi:10.1016/j.isci.2023.106826 [paper]

Compartmentalization of soluble endocytic proteins in synaptic vesicle clusters by phase separation.

Journal: iScience

Status: code on request

[36501] doi:10.1016/j.isci.2023.106828 [paper, repository]

The developmental profile of visual cortex astrocytes.

Journal: iScience

Authors' code: Zenodo 7854025 (other-open), Zenodo 7853963 (other-open), Zenodo 7853953 (other-open)

Status: code verified, 6 files readable

[36502] doi:10.1016/j.isci.2023.106829 [paper, repository]

microRNA-132 regulates gene expression programs involved in microglial homeostasis.

Journal: iScience

Authors' code: dpeerlab/Palantir (MIT)

Status: code verified, 57 files readable, 2 matches

[36503] doi:10.1038/s41398-023-02397-3 [paper, data]

Methadone alters transcriptional programs associated with synapse formation in human cortical organoids.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[36504] doi:10.1038/s41398-023-02448-9 [paper]

NAPE-PLD deletion in stress-TRAPed neurons results in an anxiogenic phenotype.

Journal: Translational psychiatry

Status: code on request

[36505] doi:10.1038/s41398-023-02455-w [paper, repository]

Effects of the mGlu2/3 receptor agonist LY379268 on two models of disturbed auditory evoked brain oscillations in mice.

Journal: Translational psychiatry

Authors' code: adredish/MClust-Spike-Sorting-Toolbox (GPL-3.0)

Status: code verified, 199 files readable

[36506] doi:10.1038/s41467-023-38252-8 [paper, data]

Type I interferon response in astrocytes promotes brain metastasis by enhancing monocytic myeloid cell recruitment.

Journal: Nature communications

Status: data only, 1 dataset cited

[36507] doi:10.1038/s41467-023-38273-3 [paper, data]

Mapping PTBP2 binding in human brain identifies SYNGAP1 as a target for therapeutic splice switching.

Journal: Nature communications

Status: data only, 1 dataset cited

[36508] doi:10.1038/s41539-023-00161-2 [paper, repository]

A dual-process model for cognitive training.

Journal: NPJ science of learning

Authors' code: juliaericson/Working-Memory-Training-Learning-Curves (no license)

Status: code verified, 5 files readable

[36509] doi:10.1038/s41598-023-34518-9 [paper, repository]

Explainable semi-supervised deep learning shows that dementia is associated with small, avocado-shaped clocks with irregularly placed hands.

Journal: Scientific reports

Authors' code: iheallab/Clock-Drawing-Classification-With-RF_VAE (no license)

Status: code verified, 5 files readable, 1 match

[36510] doi:10.1038/s42003-023-04878-z [paper, repository]

Interplay between alpha and theta band activity enables management of perception-action representations for goal-directed behavior.

Journal: Communications biology

Authors' code: OSF 2hnyk (no license)

Status: code verified

[36511] doi:10.1093/braincomms/fcad149 [paper, repository]

Altered directional functional connectivity underlies post-stroke cognitive recovery.

Journal: Brain communications

Authors' code: BabadiLab/NLGC (BSD-3-Clause)

Status: code verified, 14 files readable, 3 matches

[36512] doi:10.1186/s12893-023-01999-4 [paper, data]

Analysis of the efficacy of microdissection of paravebous sinus meningiomas invading large venous sinuses.

Journal: BMC surgery

Status: data only, 1 dataset cited

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