Every paper, by date: page 164

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 164 of 200: 6 May 2023 to 27 April 2023.

Saturday, 6 May 2023 (19 papers, 3 on this page)

[36513] doi:10.1186/s13195-023-01232-7 [paper, data]

Entorhinal cortex epigenome-wide association study highlights four novel loci showing differential methylation in Alzheimer's disease.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[36514] doi:10.3390/ijms24098343 [paper, data]

Experimental and Clinical Investigation of Cytokines in Migraine: A Narrative Review.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[36515] doi:10.3390/jpm13050799 [paper]

Brain Network Topology in Deficit and Non-Deficit Schizophrenia: Application of Graph Theory to Local and Global Indices.

Journal: Journal of personalized medicine

Status: code on request

Friday, 5 May 2023 (35 papers)

[36516] doi:10.1002/hbm.26298 [paper, data]

Similar somatotopy for active and passive digit representation in primary somatosensory cortex.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[36517] doi:10.1002/hbm.26325 [paper, data]

Deficits in naming pictures of objects are associated with glioma infiltration of the inferior longitudinal fasciculus: A study with diffusion MRI tractography, volumetric MRI, and neuropsychology.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[36518] doi:10.1002/hbm.26330 [paper, repository]

Distance-dependent distribution thresholding in probabilistic tractography.

Journal: Human brain mapping

Authors' code: mrc-cbu.cam.ac.uk/bibliography/opendata (no license)

Status: code verified

[36519] doi:10.1016/j.celrep.2023.112455 [paper]

A tug of war between DCC and ROBO1 signaling during commissural axon guidance.

Journal: Cell reports

Status: code on request

[36520] doi:10.1016/j.isci.2023.106800 [paper, data]

Unveiling the time course of visual stabilization through human electrophysiology.

Journal: iScience

Status: code on request, 1 dataset cited

[36521] doi:10.1016/j.isci.2023.106814 [paper]

Injury-induced activation of the endocannabinoid system promotes axon regeneration.

Journal: iScience

Status: code on request

[36522] doi:10.1016/j.neuroimage.2023.120110 [paper, repository]

Unbiased and efficient sampling of timeseries reveals redundancy of brain network and gradient structure.

Journal: NeuroImage

Authors' code: AdityaNanda/Networks-Gradients-Sampling-Toolbox (other)

Status: code verified, 11 files readable, 2 matches

[36523] doi:10.1016/j.nicl.2023.103418 [paper, repository]

Subcortical functional connectivity gradients in temporal lobe epilepsy.

Journal: NeuroImage. Clinical

Authors' code: penn-cnt/TLE_Gradients (no license)

Status: code verified, 2 files readable, 1 match

[36524] doi:10.1016/j.nicl.2023.103428 [paper, repository]

Structural-functional connectivity bandwidth predicts processing speed in mild traumatic brain Injury: A multiplex network analysis.

Journal: NeuroImage. Clinical

Authors' code: parsonsn/SC-FC-Multiplex-Bandwidth (no license)

Status: code verified

[36525] doi:10.1038/s41380-023-02069-0 [paper, repository]

Psychosis brain subtypes validated in first-episode cohorts and related to illness remission: results from the PHENOM consortium.

Journal: Molecular psychiatry

Authors' code: evarol/MIDAS (other), neurominer-git (no license), ganchand/AJP_Codes (no license)

Status: code verified, 19 files readable

[36526] doi:10.1038/s41467-023-38327-6 [paper, data]

Paired immunoglobulin-like receptor B is an entry receptor for mammalian orthoreovirus.

Journal: Nature communications

Status: data only, 1 dataset cited

[36527] doi:10.1038/s41467-023-38338-3 [paper]

Dynamic and stable hippocampal representations of social identity and reward expectation support associative social memory in male mice.

Journal: Nature communications

Status: code on request

[36528] doi:10.1038/s41531-023-00511-2 [paper, data]

Gastrointestinal disorders in Parkinson's disease and other Lewy body diseases.

Journal: NPJ Parkinson's disease

Status: data only, 9 datasets cited

[36529] doi:10.1038/s42003-023-04804-3 [paper, data]

Variational relevance evaluation of individual fMRI data enables deconstruction of task-dependent neural dynamics.

Journal: Communications biology

Status: code on request, 1 dataset cited

[36530] doi:10.1083/jcb.202205129 [paper, repository]

Systematic analysis of YFP traps reveals common mRNA/protein discordance in neural tissues.

Journal: The Journal of cell biology

Authors' code: ilandavislab/Annotate.OMERO.Fig (no license)

Status: code verified, 12 files readable, 1 match

[36531] doi:10.1097/j.pain.0000000000002900 [paper, repository]

Deep learning-guided postoperative pain assessment in children.

Journal: Pain

Authors' code: wuw2019/CPANN (no license)

Status: empty repository, 1 file readable

[36532] doi:10.1126/sciadv.abq7553 [paper, repository]

Single-cell analysis of the postnatal dorsal V-SVZ reveals a role for Bmpr1a signaling in silencing pallial germinal activity.

Journal: Science advances

Authors' code: OlivierRaineteauSBRI/scRNASeq (no license)

Status: code verified, 17 files readable, 22 matches

[36533] doi:10.1126/sciadv.add4201 [paper, data]

Evolutionary dynamics of mushroom body Kenyon cell types in hymenopteran brains from multifunctional type to functionally specialized types.

Journal: Science advances

Status: data only, 1 dataset cited

[36534] doi:10.1177/09567976231160702 [paper, repository]

Intelligence Polygenic Score Is More Predictive of Crystallized Measures: Evidence From the Adolescent Brain Cognitive Development (ABCD) Study.

Journal: Psychological science

Authors' code: robloughnan/ABCD_Intelligence_Polygenic_Score (no license)

Status: code verified, 3 files readable, 2 matches

[36535] doi:10.1186/s13062-023-00377-7 [paper]

Probing pathways by which rhynchophylline modifies sleep using spatial transcriptomics.

Journal: Biology direct

Status: data only

[36536] doi:10.1186/s41235-023-00481-2 [paper, repository]

How essentialist reasoning about language acquisition relates to educational myths and policy endorsements.

Journal: Cognitive research: principles and implications

Authors' code: OSF m34gh (no license)

Status: code verified, 2 files readable

[36537] doi:10.1371/journal.pcbi.1011110 [paper, repository]

A convolutional neural network provides a generalizable model of natural sound coding by neural populations in auditory cortex.

Journal: PLoS computational biology

Authors' code: Zenodo 7796574 (CC-BY-4.0), LBHB/NEMS (GPL-3.0)

Status: code verified, 136 files readable, 10 matches

[36538] doi:10.1371/journal.pgen.1010439 [paper, repository]

Genetic variation in chromatin state across multiple tissues in Drosophila melanogaster.

Journal: PLoS genetics

Authors' code: Kh0iHuynh/ATAC-seq-Project (no license)

Status: code verified, 36 files readable, 11 matches

[36539] doi:10.21769/bioprotoc.4664 [paper, repository]

Simultaneous Microendoscopic Calcium Imaging and EEG Recording of Mouse Brain during Sleep.

Journal: Bio-protocol

Authors' code: Zenodo 6870666 (CC-BY-4.0)

Status: code verified, 70 files readable, 4 matches

[36540] doi:10.3389/fimmu.2023.1118637 [paper, data]

Neurotransmitters: promising immune modulators in the tumor microenvironment.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[36541] doi:10.3389/fneur.2023.1124282 [paper, repository]

Multi-tensor diffusion abnormalities of gray matter in an animal model of cortical dysplasia.

Journal: Frontiers in neurology

Authors' code: lconcha/Displasias (no license)

Status: code verified, 126 files readable, 5 matches

[36542] doi:10.3389/fnmol.2023.1139287 [paper, data]

Temporal transcriptional control of neural induction in human induced pluripotent stem cells.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[36543] doi:10.3389/fnsys.2023.1123221 [paper, data]

Testing EEG functional connectivity between sensorimotor and face processing visual regions in individuals with congenital facial palsy.

Journal: Frontiers in systems neuroscience

Status: data only, 1 dataset cited

[36544] doi:10.3389/fpsyt.2023.1147540 [paper, repository]

Functional connectivity of the cerebellar vermis in bipolar disorder and associations with mood.

Journal: Frontiers in psychiatry

Authors' code: cran.r-project.org/package=jtools (no license)

Status: code verified

[36545] doi:10.3389/fpsyt.2023.1179811 [paper, data]

The multimodal Munich Clinical Deep Phenotyping study to bridge the translational gap in severe mental illness treatment research.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[36546] doi:10.3390/biomedicines11051365 [paper]

Evolving Diagnostic and Treatment Strategies for Pediatric CNS Tumors: The Impact of Lipid Metabolism.

Journal: Biomedicines

Status: data only

[36547] doi:10.3390/biomedicines11051368 [paper, data]

Abstinence from Escalation of Cocaine Intake Changes the microRNA Landscape in the Cortico-Accumbal Pathway.

Journal: Biomedicines

Status: data only, 1 dataset cited

[36548] doi:10.3390/brainsci13050762 [paper, data]

Single-Cell Transcriptomics Reveals Evidence of Endothelial Dysfunction in the Brains of COVID-19 Patients with Implications for Glioblastoma Progression.

Journal: Brain sciences

Status: data only, 1 dataset cited

[36549] doi:10.3390/ijms24098311 [paper, repository]

Calcium Dynamics of the Ventrolateral Preoptic GABAergic Neurons during Spontaneous Sleep-Waking and in Response to Homeostatic Sleep Demands.

Journal: International journal of molecular sciences

Authors' code: daharoni/Miniscope_DAQ_Firmware (MIT)

Status: code verified, 12 files readable

[36550] doi:10.7554/elife.82376 [paper, repository]

Sex, strain, and lateral differences in brain cytoarchitecture across a large mouse population.

Journal: eLife

Authors' code: delkind/detectron_segmentation (no license), delkind/mouse-brain-cell-counting (Apache-2.0)

Status: code verified, 63 files readable

Thursday, 4 May 2023 (27 papers)

[36551] doi:10.1007/s10827-023-00847-x [paper, repository]

A biophysical and statistical modeling paradigm for connecting neural physiology and function.

Journal: Journal of computational neuroscience

Authors' code: albertyuchen/biophysical_ppglm (MIT)

Status: code verified, 80 files readable, 1 match

[36552] doi:10.1007/s11060-023-04287-6 [paper]

Genome-wide profiling of patient-derived glioblastoma stem-like cells reveals recurrent genetic and transcriptomic signatures associated with brain tumors.

Journal: Journal of neuro-oncology

Status: data only

[36553] doi:10.1007/s12539-023-00567-x [paper, repository]

Spatial-Temporal EEG Fusion Based on Neural Network for Major Depressive Disorder Detection.

Journal: Interdisciplinary sciences, computational life sciences

Authors' code: TianjinUWang/Spatial-temporal-EEG-fusion-framework-for-MDD-detection (MIT)

Status: code verified, 12 files readable, 1 match

[36554] doi:10.1016/j.isci.2023.106777 [paper, data]

Oxygen-induced pathological angiogenesis promotes intense lipid synthesis and remodeling in the retina.

Journal: iScience

Status: code on request, 1 dataset cited

[36555] doi:10.1016/j.omtm.2023.04.008 [paper, repository]

Deconvolution of spatial sequencing provides accurate characterization of hESC-derived DA transplants <i>in vivo</i>.

Journal: Molecular therapy. Methods & clinical development

Authors' code: jana-rajova/ST_hESC_DA_analysis (GPL-3.0)

Status: code verified, 7 files readable

[36556] doi:10.1038/s41398-023-02458-7 [paper, repository]

Amygdala subdivisions exhibit aberrant whole-brain functional connectivity in relation to stress intolerance and psychotic symptoms in 22q11.2DS.

Journal: Translational psychiatry

Authors' code: MIPLabCH/myPLS (GPL-2.0)

Status: code verified, 37 files readable, 4 matches

[36557] doi:10.1038/s41467-023-38120-5 [paper, data]

Symport and antiport mechanisms of human glutamate transporters.

Journal: Nature communications

Status: data only, 11 datasets cited

[36558] doi:10.1038/s41467-023-38186-1 [paper, repository]

Re-convolving the compositional landscape of primary and recurrent glioblastoma reveals prognostic and targetable tissue states.

Journal: Nature communications

Authors' code: markvanderloo/extremevalues (no license), adithyakan/reconvolving_gbm (no license)

Status: code verified, 42 files readable, 4 matches

[36559] doi:10.1038/s41467-023-38192-3 [paper, repository]

Chemistry-intuitive explanation of graph neural networks for molecular property prediction with substructure masking.

Journal: Nature communications

Authors' code: Zenodo 7707093 (other-open), wzxxxx/structure-mask-explanation--sme- (no license)

Status: code verified, 62 files readable, 9 matches

[36560] doi:10.1038/s41587-023-01758-z [paper, repository]

Efficient prime editing in mouse brain, liver and heart with dual AAVs.

Journal: Nature biotechnology

Authors' code: pinellolab/CRISPResso2 (other)

Status: code verified, 62 files readable, 5 matches

[36561] doi:10.1038/s41592-023-01863-6 [paper, data]

Glutamate indicators with improved activation kinetics and localization for imaging synaptic transmission.

Journal: Nature methods

Status: data only, 1 dataset cited

[36562] doi:10.1038/s41598-023-33734-7 [paper, repository]

Sentiments analysis of fMRI using automatically generated stimuli labels under naturalistic paradigm.

Journal: Scientific reports

Authors' code: flairNLP/flair (MIT)

Status: code verified, 142 files readable, 1 match

[36563] doi:10.1186/s12938-023-01102-1 [paper]

Detection of motor imagery based on short-term entropy of time-frequency representations.

Journal: Biomedical engineering online

Status: code on request

[36564] doi:10.1186/s13024-023-00611-w [paper, data]

BACE1 regulates expression of Clusterin in astrocytes for enhancing clearance of β-amyloid peptides.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[36565] doi:10.1371/journal.pone.0277158 [paper, repository]

Associations between resting state functional brain connectivity and childhood anhedonia: A reproduction and replication study.

Journal: PloS one

Authors' code: OSF vy85h (no license)

Status: code verified, 1 file readable, 8 matches

[36566] doi:10.1371/journal.pone.0285356 [paper, data]

Organoids containing neural-like cells derived from chicken iPSCs respond to poly:IC through the RLR family.

Journal: PloS one

Status: data only, 1 dataset cited

[36567] doi:10.3389/fnagi.2023.1088140 [paper, data]

Alzheimer's disease pathology: pathways between chronic vascular risk factors and blood-brain barrier dysfunction in a cohort of patients with different types of dementia.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[36568] doi:10.3389/fncir.2023.1172464 [paper, repository]

Cortical interneurons: fit for function and fit to function? Evidence from development and evolution.

Journal: Frontiers in neural circuits

Authors' code: JoramKeijser/interneuron_evolution (MIT), JoramKeijser/elfn1_reconstruction (MIT)

Status: code verified, 30 files readable, 10 matches

[36569] doi:10.3389/fncom.2023.1150300 [paper, repository]

Time as a supervisor: temporal regularity and auditory object learning.

Journal: Frontiers in computational neuroscience

Authors' code: CohenAuditoryLab/TemporalRegularity_RWD2023 (GPL-3.0)

Status: code verified, 113 files readable, 6 matches

[36570] doi:10.3389/fncom.2023.1172987 [paper, data]

Patient-specific approach using data fusion and adversarial training for epileptic seizure prediction.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[36571] doi:10.3389/fnins.2023.1076824 [paper, repository]

Quality control in resting-state fMRI: the benefits of visual inspection.

Journal: Frontiers in neuroscience

Authors' code: rlepping/kumc-hbic (no license)

Status: code verified, 2 files readable

[36572] doi:10.3389/fnins.2023.1117340 [paper, data]

Study on characteristic of epileptic multi-electroencephalograph base on Hilbert-Huang transform and brain network dynamics.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[36573] doi:10.3389/fnins.2023.1183145 [paper, data]

Multi-head attention-based masked sequence model for mapping functional brain networks.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[36574] doi:10.3390/biomedicines11051354 [paper, data]

DenseNet_ HybWWoA: A DenseNet-Based Brain Metastasis Classification with a Hybrid Metaheuristic Feature Selection Strategy.

Journal: Biomedicines

Status: data only, 1 dataset cited

[36575] doi:10.7554/elife.74434 [paper, repository]

Principles for coding associative memories in a compact neural network.

Journal: eLife

Authors' code: ChristianPritz/Principles-for-coding-associative-memories-in-a-compact-neural-network (no license)

Status: code verified, 55 files readable, 15 matches

[36576] doi:10.7554/elife.86336 [paper, data]

Modulation of sleep by trafficking of lipids through the &lt;i&gt;Drosophila&lt;/i&gt; blood-brain barrier.

Journal: eLife

Status: data only, 1 dataset cited

[36577] doi:10.7554/elife.86548 [paper, repository]

Theta- and gamma-band oscillatory uncoupling in the macaque hippocampus.

Journal: eLife

Authors' code: hoffman-lab/manuscripts (no license)

Status: code verified, 2,000 files readable, 6 matches

Wednesday, 3 May 2023 (18 papers)

[36578] doi:10.1016/j.isci.2023.106794 [paper]

White matter and neurochemical mechanisms underlying age-related differences in motor processing speed.

Journal: iScience

Status: code on request

[36579] doi:10.1021/acs.biomac.3c00025 [paper, data]

Membrane-Bound Vimentin Filaments Reorganize and Elongate under Strain.

Journal: Biomacromolecules

Status: data only, 1 dataset cited

[36580] doi:10.1038/s41467-023-37390-3 [paper, repository]

Optical neural network via loose neuron array and functional learning.

Journal: Nature communications

Authors' code: huoyuchisc/FL (GPL-3.0)

Status: empty repository, 2 files readable

[36581] doi:10.1038/s41467-023-37976-x [paper, repository]

Parabolic avalanche scaling in the synchronization of cortical cell assemblies.

Journal: Nature communications

Authors' code: PlenzLab/ParabolicAvalanches (MIT)

Status: code verified, 6 files readable, 3 matches

[36582] doi:10.1038/s41467-023-38281-3 [paper, data]

Molecular architecture of the Gα_i-bound TRPC5 ion channel.

Journal: Nature communications

Status: data only, 5 datasets cited

[36583] doi:10.1038/s41586-023-06007-6 [paper, repository]

Cortico-cortical feedback engages active dendrites in visual cortex.

Journal: Nature

Authors' code: llerussell/SLMTransformMaker3D (no license), llerussell/Naparm (no license)

Status: code verified, 95 files readable, 2 matches

[36584] doi:10.1038/s41586-023-06031-6 [paper, repository]

Learnable latent embeddings for joint behavioural and neural analysis.

Journal: Nature

Authors' code: AdaptiveMotorControlLab/CEBRA (Apache-2.0), snel-repo/autolfads-tf2 (MIT), neurallatents/nlb_tools (MIT), zhd96/pi-vae (no license), AdaptiveMotorControlLab/CEBRA-figures (MIT)

Status: code verified, 228 files readable, 31 matches

[36585] doi:10.1038/s41586-023-06036-1 [paper, data]

Glioblastoma remodelling of human neural circuits decreases survival.

Journal: Nature

Status: data only, 1 dataset cited

[36586] doi:10.1038/s41598-023-32404-y [paper, repository]

The temporal precision of audiovisual integration is associated with longitudinal fall incidents but not sensorimotor fall risk in older adults.

Journal: Scientific reports

Authors' code: OSF uxgdj (no license)

Status: code verified, 1 file readable, 5 matches

[36587] doi:10.1038/s41598-023-34148-1 [paper, data]

Neurophysiological markers of emotion regulation predict efficacy of entrepreneurship education.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36588] doi:10.1093/braincomms/fcad143 [paper, repository]

Increased flexibility of brain dynamics in patients with multiple sclerosis.

Journal: Brain communications

Authors' code: GenLouvain/GenLouvain (BSD-2-Clause)

Status: code verified, 46 files readable, 4 matches

[36589] doi:10.1186/s10194-023-01589-y [paper, data]

Characterization of the biochemical and behavioral effects of cannabidiol: implications for migraine.

Journal: The journal of headache and pain

Status: data only, 2 datasets cited

[36590] doi:10.1186/s12868-023-00799-z [paper, repository]

Characterization of the planarian surface electroencephalogram.

Journal: BMC neuroscience

Authors' code: OSF xf5cd (no license), juliankeil/VirtualTools (no license)

Status: code verified, 51 files readable, 4 matches

[36591] doi:10.1186/s12871-023-02111-2 [paper, data]

Functional modular networks identify the pivotal genes associated with morphine addiction and potential drug therapies.

Journal: BMC anesthesiology

Status: data only, 1 dataset cited

[36592] doi:10.1186/s12916-023-02811-z [paper, data]

NREM sleep as a novel protective cognitive reserve factor in the face of Alzheimer's disease pathology.

Journal: BMC medicine

Status: data only, 1 dataset cited

[36593] doi:10.3389/fnana.2023.1168523 [paper, repository]

Histological and MRI brain atlas of the common shrew, <i>Sorex araneus</i>, with brain region-specific gene expression profiles.

Journal: Frontiers in neuroanatomy

Authors' code: doi:10.5061/dryad.g57g1 (no license)

Status: code verified

[36594] doi:10.3390/ijms24098172 [paper, data]

Chronic Administration of Non-Constitutive Proteasome Inhibitor Modulates Long-Term Potentiation and Glutamate Signaling-Related Gene Expression in Murine Hippocampus.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[36595] doi:10.7554/elife.82410 [paper, repository]

Retinal motion statistics during natural locomotion.

Journal: eLife

Authors' code: Zenodo 7055548 (MIT)

Status: code verified, 42 files readable, 1 match

Tuesday, 2 May 2023 (26 papers)

[36596] doi:10.1016/j.celrep.2023.112467 [paper]

Human acute microelectrode array recordings with broad cortical access, single-unit resolution, and parallel behavioral monitoring.

Journal: Cell reports

Status: code on request

[36597] doi:10.1016/j.dcn.2023.101251 [paper, repository]

Age and vocabulary knowledge differentially influence the N400 and theta responses during semantic retrieval.

Journal: Developmental cognitive neuroscience

Authors' code: juliagoolia28/manuscripts (no license)

Status: code verified, 51 files readable, 7 matches

[36598] doi:10.1016/j.neuroimage.2023.120152 [paper, repository]

Reliability of resting-state functional connectivity in the human spinal cord: Assessing the impact of distinct noise sources.

Journal: NeuroImage

Authors' code: eippertlab/restingstate-reliability-spinalcord (MIT)

Status: code verified, 28 files readable, 13 matches

[36599] doi:10.1016/j.xinn.2023.100436 [paper, data]

Cynomolgus-rhesus hybrid macaques serve as a platform for imprinting studies.

Journal: Innovation (Cambridge (Mass.))

Status: code on request, 1 dataset cited

[36600] doi:10.1038/s41380-023-02071-6 [paper, repository]

Gut microbiota changes require vagus nerve integrity to promote depressive-like behaviors in mice.

Journal: Molecular psychiatry

Authors' code: aghozlane/masque (LGPL-3.0), SohamSahaNeuroscience/Microbiota-analysis (no license)

Status: code verified, 133 files readable

[36601] doi:10.1038/s41380-023-02077-0 [paper]

The functional connectome in obsessive-compulsive disorder: resting-state mega-analysis and machine learning classification for the ENIGMA-OCD consortium.

Journal: Molecular psychiatry

Status: code on request

[36602] doi:10.1038/s41467-023-37778-1 [paper, repository]

State-level macro-economic factors moderate the association of low income with brain structure and mental health in U.S. children.

Journal: Nature communications

Authors' code: OSF t3ev7 (no license)

Status: code verified, 3 files readable, 4 matches

[36603] doi:10.1038/s41467-023-38205-1 [paper, data]

Structural basis for the self-recognition of sDSCAM in Chelicerata.

Journal: Nature communications

Status: data only, 2 datasets cited

[36604] doi:10.1038/s41467-023-38248-4 [paper, repository]

Gut microbiome dysbiosis across early Parkinson's disease, REM sleep behavior disorder and their first-degree relatives.

Journal: Nature communications

Authors' code: gavinmdouglas/q2-picrust2 (GPL-3.0), Joannehb/Gut-microbiota-across-early-synucleinopathy (no license), Zenodo 7783875 (other-open)

Status: code verified, 11 files readable, 10 matches

[36605] doi:10.1038/s41539-023-00162-1 [paper, repository]

Inter-brain coupling reflects disciplinary differences in real-world classroom learning.

Journal: NPJ science of learning

Authors' code: cloud.tsinghua.edu.cn/d/455601fcaf814baca98d (no license)

Status: code verified

[36606] doi:10.1038/s41598-023-33599-w [paper]

Modeling the antidepressant treatment response to transcranial magnetic stimulation using an exponential decay function.

Journal: Scientific reports

Status: code on request

[36607] doi:10.1038/s41598-023-33780-1 [paper]

Multiple levels of contextual influence on action-based timing behavior and cortical activation.

Journal: Scientific reports

Status: code on request

[36608] doi:10.1093/texcom/tgad007 [paper]

Childhood obesity is linked to putative neuroinflammation in brain white matter, hypothalamus, and striatum.

Journal: Cerebral cortex communications

Status: code on request

[36609] doi:10.1111/acel.13861 [paper, data]

Age-related telomere attrition in the human putamen.

Journal: Aging cell

Status: data only, 2 datasets cited

[36610] doi:10.1186/s13024-023-00621-8 [paper, repository]

Mutations in α-synuclein, TDP-43 and tau prolong protein half-life through diminished degradation by lysosomal proteases.

Journal: Molecular neurodegeneration

Authors' code: arya-shruti/Lysosomal-Protease-Project (no license)

Status: code verified, 4 files readable, 1 match

[36611] doi:10.1371/journal.pcbi.1010989 [paper, repository]

Coherent noise enables probabilistic sequence replay in spiking neuronal networks.

Journal: PLoS computational biology

Authors' code: Zenodo 6378376 (no license)

Status: code verified, 52 files readable, 4 matches

[36612] doi:10.1556/2006.2023.00015 [paper, data]

Striatal ups or downs? Neural correlates of monetary reward anticipation, cue reactivity and their interaction in alcohol use disorder and gambling disorder.

Journal: Journal of behavioral addictions

Status: data only, 1 dataset cited

[36613] doi:10.26508/lsa.202201730 [paper, data]

Deletion of SERF2 in mice delays embryonic development and alters amyloid deposit structure in the brain.

Journal: Life science alliance

Status: data only, 1 dataset cited

[36614] doi:10.3389/fncom.2023.1082502 [paper, data]

An information theoretic score for learning hierarchical concepts.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[36615] doi:10.3389/fnins.2023.1130606 [paper, repository]

The brain-inspired decoder for natural visual image reconstruction.

Journal: Frontiers in neuroscience

Authors' code: WYCAS/S2INet (no license), doi:10.5061/dryad.4ch10 (no license)

Status: code verified, 2 files readable, 1 match

[36616] doi:10.3389/fnins.2023.1153568 [paper, repository]

Phase-amplitude coupling-based adaptive filters for neural signal decoding.

Journal: Frontiers in neuroscience

Authors' code: PuddingZJU/PACNet (GPL-3.0)

Status: code verified, 6 files readable

[36617] doi:10.3389/fnmol.2023.1037902 [paper, repository]

Different iPSC-derived neural stem cells shows various spectrums of spontaneous differentiation during long term cultivation.

Journal: Frontiers in molecular neuroscience

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable, 1 match

[36618] doi:10.3389/fpsyt.2023.1151480 [paper]

The gene expression patterns as surrogate indices of pH in the brain.

Journal: Frontiers in psychiatry

Status: data only

[36619] doi:10.3390/s23094451 [paper, repository]

Listen to the Brain-Auditory Sound Source Localization in Neuromorphic Computing Architectures.

Journal: Sensors (Basel, Switzerland)

Authors' code: schmidDan/neuromrophic_auditory_ssl (no license)

Status: empty repository, 1 file readable

[36620] doi:10.7554/elife.82502 [paper, repository]

Metabolic activity organizes olfactory representations.

Journal: eLife

Authors' code: osmoai/publications (Apache-2.0)

Status: code verified, 21 files readable, 8 matches

[36621] doi:10.7554/elife.86430 [paper, data]

Humans parsimoniously represent auditory sequences by pruning and completing the underlying network structure.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 1 May 2023 (54 papers)

[36622] doi:10.1001/jamanetworkopen.2023.16067 [paper, repository]

Association of Preterm Birth and Socioeconomic Status With Neonatal Brain Structure.

Journal: JAMA network open

Authors' code: OSF ftv2s (no license)

Status: empty repository

[36623] doi:10.1001/jamaneurol.2023.0339 [paper, repository]

Association of Dementia Risk With Focal Epilepsy and Modifiable Cardiovascular Risk Factors.

Journal: JAMA neurology

Authors' code: OSF vmabg (no license)

Status: code verified, 98 files readable

[36624] doi:10.1002/hbm.26323 [paper, data]

Hierarchical categorization learning is associated with representational changes in the dorsal striatum and posterior frontal and parietal cortex.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[36625] doi:10.1007/s00330-023-09665-2 [paper, repository]

Deep learning segmentation results in precise delineation of the putamen in multiple system atrophy.

Journal: European radiology

Authors' code: reisert/patchwork (MIT)

Status: code verified, 18 files readable

[36626] doi:10.1016/j.celrep.2023.112448 [paper, repository]

Regulatory imbalance between LRRK2 kinase, PPM1H phosphatase, and ARF6 GTPase disrupts the axonal transport of autophagosomes.

Journal: Cell reports

Authors' code: jnirschl/kinesin-3_guedes-dias_2018 (MIT), Zenodo 2530934 (other-open)

Status: code verified, 24 files readable

[36627] doi:10.1016/j.stemcr.2023.04.004 [paper, repository]

Single-cell transcriptome analysis of xenotransplanted human retinal organoids defines two migratory cell populations of nonretinal origin.

Journal: Stem cell reports

Authors' code: csanti88/transplant_human_organoid_retina_2022 (no license)

Status: code verified, 2 files readable

[36628] doi:10.1038/s12276-023-00993-3 [paper]

Sex differences in the progression of glucose metabolism dysfunction in Alzheimer's disease.

Journal: Experimental & molecular medicine

Status: data only

[36629] doi:10.1038/s41598-023-32922-9 [paper]

Cholesterol biosynthesis modulates differentiation in murine cranial neural crest cells.

Journal: Scientific reports

Status: data only

[36630] doi:10.1038/s44220-023-00046-8 [paper, data]

Network-specific metabolic and haemodynamic effects elicited by non-invasive brain stimulation.

Journal: Nature. Mental health

Status: data only, 1 dataset cited

[36631] doi:10.1073/pnas.2122168120 [paper, data]

Direct neuronal reprogramming by temporal identity factors.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36632] doi:10.1073/pnas.2207025120 [paper, repository]

White matter plasticity following cataract surgery in congenitally blind patients.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: canlab/MediationToolbox (no license), OSF h7mb5 (no license)

Status: code verified, 208 files readable, 3 matches

[36633] doi:10.1073/pnas.2215590120 [paper, data]

Intestinal activating transcription factor 4 regulates stress-related behavioral alterations via paraventricular thalamus in male mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36634] doi:10.1073/pnas.2216268120 [paper, data]

Surge of neurophysiological coupling and connectivity of gamma oscillations in the dying human brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36635] doi:10.1073/pnas.2218023120 [paper, repository]

Differential processing of a chemosensory cue across life stages sharing the same valence state in &lt;i&gt;Caenorhabditis elegans&lt;/i&gt;.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: HallemLab/Banerjee_et_al_2023 (no license)

Status: empty repository, 1 file readable

[36636] doi:10.1073/pnas.2218443120 [paper, repository]

Learning rules of engagement for social exchange within and between groups.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF rkbev (no license)

Status: code verified

[36637] doi:10.1073/pnas.2219994120 [paper, repository]

Nanoelectrochemistry reveals how soluble Aβ₄₂ oligomers alter vesicular storage and release of glutamate.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.5061/dryad.mw6m90621 (no license)

Status: code verified

[36638] doi:10.1093/bib/bbad166 [paper, repository]

InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop.

Journal: Briefings in bioinformatics

Authors' code: jumphone/inferloop (MIT)

Status: code verified, 141 files readable, 7 matches

[36639] doi:10.1093/brain/awac392 [paper, repository]

Educational attainment, structural brain reserve and Alzheimer's disease: a Mendelian randomization analysis.

Journal: Brain : a journal of neurology

Authors' code: ucam-department-of-psychiatry/UKB (GPL-3.0), as2970/EA_brain_AD_MR (no license)

Status: code verified, 44 files readable, 8 matches

[36640] doi:10.1093/brain/awac416 [paper, repository]

Reduced grid-like theta modulation in schizophrenia.

Journal: Brain : a journal of neurology

Authors' code: OSF ght4r (no license)

Status: code verified, 15 files readable, 6 matches

[36641] doi:10.1093/brain/awad013 [paper, repository]

Latent disconnectome prediction of long-term cognitive-behavioural symptoms in stroke.

Journal: Brain : a journal of neurology

Authors' code: chrisfoulon/bcblib (BSD-3-Clause), bcblab.com (no license), disconnectomestudio.bcblab.com (no license)

Status: code verified, 113 files readable, 3 matches

[36642] doi:10.1093/cercor/bhac470 [paper, data]

Expression patterns of NKCC1 in neurons and non-neuronal cells during cortico-hippocampal development.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 6 datasets cited

[36643] doi:10.1093/cercor/bhac511 [paper, data]

The waiting game: investigating the neurobiological transition from acute to persistent pain in adolescent rats.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[36644] doi:10.1093/cercor/bhac535 [paper, repository]

The path of dishonesty: identification of mental processes with electrical neuroimaging.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: lorenarrgianotti/ThePathOfDishonesty (no license)

Status: empty repository, 1 file readable

[36645] doi:10.1093/cercor/bhad007 [paper, data]

Brain-constrained neural modeling explains fast mapping of words to meaning.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[36646] doi:10.1093/cercor/bhad015 [paper, repository]

Neural unscrambling of temporal information during a nonlinear narrative.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF qnwhu (no license)

Status: code verified, 7 files readable, 4 matches

[36647] doi:10.1093/cercor/bhad029 [paper, repository]

Resting-state neural correlates of visual Gestalt experience.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF 32vcn (no license)

Status: code verified, 7 files readable, 7 matches

[36648] doi:10.1093/cercor/bhad031 [paper, repository]

Beyond alpha power: EEG spatial and spectral gradients robustly stratify disorders of consciousness.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: milecombo/spectralExponent (no license)

Status: code verified, 3 files readable, 2 matches

[36649] doi:10.1093/g3journal/jkad050 [paper, repository]

Cryptic genetic variation of expression quantitative trait locus architecture revealed by genetic perturbation in Caenorhabditis elegans.

Journal: G3 (Bethesda, Md.)

Authors' code: git.wur.nl/published_papers/vanwijk_etal_2020_ (no license)

Status: code verified

[36650] doi:10.1093/hmg/ddad002 [paper, data]

Dysregulation of the chromatin environment leads to differential alternative splicing as a mechanism of disease in a human model of autism spectrum disorder.

Journal: Human molecular genetics

Status: data only, 1 dataset cited

[36651] doi:10.1093/hmg/ddad009 [paper, repository]

Predicting brain-regional gene regulatory networks from multi-omics for Alzheimer's disease phenotypes and Covid-19 severity.

Journal: Human molecular genetics

Authors' code: daifengwanglab/ADSNPheno (MIT), uwprod-my.sharepoint.com/personal/skhullar2_wisc_edu (no license), adsnpheno.shinyapps.io/alzheimersdisease_snpheno (no license)

Status: code verified, 22 files readable, 18 matches

[36652] doi:10.1093/nar/gkad169 [paper, repository]

The spatial landscape of gene expression isoforms in tissue sections.

Journal: Nucleic acids research

Authors' code: Zenodo 7664367 (CC-BY-4.0)

Status: code verified, 33 files readable, 11 matches

[36653] doi:10.1093/nar/gkad252 [paper, repository]

Stable bulged G-quadruplexes in the human genome: identification, experimental validation and functionalization.

Journal: Nucleic acids research

Authors' code: figshare 22110965 (CC-BY-4.0)

Status: code verified, 3 files readable

[36654] doi:10.1093/scan/nsad021 [paper, data]

It's who, not what that matters: personal relevance and early face processing.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[36655] doi:10.1093/schbul/sbac177 [paper, repository]

Controllability of Functional Brain Networks and Its Clinical Significance in First-Episode Schizophrenia.

Journal: Schizophrenia bulletin

Authors' code: QianLi9423/Project_SCZ_controllability (no license)

Status: code verified, 37 files readable, 3 matches

[36656] doi:10.1098/rstb.2022.0167 [paper, repository]

Human leukocyte antigen F-associated transcript 10 regulates the <i>I_Ks</i> potassium channel by competing for Kv7.1 ubiquitination.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.6497820 (no license)

Status: code found, still to be checked

[36657] doi:10.1098/rstb.2022.0173 [paper, repository]

Human induced pluripotent stem cell-derived cardiac myocytes and sympathetic neurons in disease modelling.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.6476237 (no license)

Status: code found, still to be checked

[36658] doi:10.1117/1.jmi.10.3.036003 [paper, data]

Random matrix theory tools for the predictive analysis of functional magnetic resonance imaging examinations.

Journal: Journal of medical imaging (Bellingham, Wash.)

Status: data only, 2 datasets cited

[36659] doi:10.1167/iovs.64.5.2 [paper, repository]

Despite Impaired Binocular Function, Binocular Disparity Integration Across the Visual Field Is Spared in Normal Aging and Glaucoma.

Journal: Investigative ophthalmology & visual science

Authors' code: Zenodo 7802555 (CC-BY-4.0)

Status: code verified, 22 files readable, 1 match

[36660] doi:10.1167/jov.23.5.16 [paper, repository]

A brain-inspired object-based attention network for multiobject recognition and visual reasoning.

Journal: Journal of vision

Authors' code: hosseinadeli/OCRA_samediff (no license)

Status: code verified, 8 files readable, 10 matches

[36661] doi:10.1167/jov.23.5.17 [paper, data]

The time course of chromatic adaptation in human early visual cortex revealed by SSVEPs.

Journal: Journal of vision

Status: data only, 2 datasets cited

[36662] doi:10.1167/jov.23.5.18 [paper, repository]

Increments in visual motion coherence are more readily detected than decrements.

Journal: Journal of vision

Authors' code: OSF 3wu7f (no license)

Status: empty repository

[36663] doi:10.1167/jov.23.5.20 [paper, repository]

Stronger serial dependence in the depth plane than the fronto-parallel plane between realistic objects: Evidence from virtual reality.

Journal: Journal of vision

Authors' code: OSF e6vgd (no license)

Status: code verified, 7 files readable, 2 matches

[36664] doi:10.1172/jci166356 [paper, data]

Elevated prelimbic cortex-to-basolateral amygdala circuit activity mediates comorbid anxiety-like behaviors associated with chronic pain.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[36665] doi:10.1186/s13073-023-01185-4 [paper, repository]

Spatial transcriptomic analysis of Sonic hedgehog medulloblastoma identifies that the loss of heterogeneity and promotion of differentiation underlies the response to CDK4/6 inhibition.

Journal: Genome medicine

Authors' code: BiomedicalMachineLearning/Medulloblastoma (no license)

Status: code verified, 61 files readable, 25 matches

[36666] doi:10.1212/wnl.0000000000207298 [paper, repository]

Revealing Individual Neuroanatomical Heterogeneity in Alzheimer Disease Using Neuroanatomical Normative Modeling.

Journal: Neurology

Authors' code: serenaverdi/ADNI_normative-modelling (no license), amarquand/PCNtoolkit (GPL-3.0)

Status: code verified, 133 files readable, 3 matches

[36667] doi:10.12998/wjcc.v11.i14.3340 [paper, data]

<i>De novo</i> mutation of <i>NAXE</i> (<i>APOAIBP</i>)<i>-</i>related early-onset progressive encephalopathy with brain edema and/or leukoencephalopathy-1: A case report.

Journal: World journal of clinical cases

Status: data only, 1 dataset cited

[36668] doi:10.1371/journal.pbio.3001724 [paper, data]

Neurocomputational mechanisms underlying fear-biased adaptation learning in changing environments.

Journal: PLoS biology

Status: data only, 1 dataset cited

[36669] doi:10.1371/journal.pcbi.1011085 [paper, repository]

Data-driven segmentation of cortical calcium dynamics.

Journal: PLoS computational biology

Authors' code: ackmanlab/pyseas (MIT), pypi.org/project/seas (no license), ackmanlab (no license), ackmanlab/ArtifactClassifier-pySEAS (MIT)

Status: code verified, 36 files readable, 13 matches

[36670] doi:10.1371/journal.pone.0284480 [paper, repository]

A comparison of machine learning approaches for the quantification of microglial cells in the brain of mice, rats and non-human primates.

Journal: PloS one

Authors' code: cell-quantifications/Microglia (no license), colab.research.google.com/drive/1fdfhsvhtu1-xej8wiqihqxtcvbjrmges (no license)

Status: code verified

[36671] doi:10.1503/jpn.220226 [paper, repository]

Elevated decision uncertainty and reduced avoidance drives in depression, anxiety and substance use disorders during approach-avoidance conflict: a replication study.

Journal: Journal of psychiatry & neuroscience : JPN

Authors' code: kforthman/optLog (no license)

Status: code verified, 2 files readable

[36672] doi:10.24272/j.issn.2095-8137.2022.281 [paper, data]

Decoding hereditary spastic paraplegia pathogenicity through transcriptomic profiling.

Journal: Zoological research

Status: data only, 1 dataset cited

[36673] doi:10.3390/e25050745 [paper, repository]

Information Encoding in Bursting Spiking Neural Network Modulated by Astrocytes.

Journal: Entropy (Basel, Switzerland)

Authors' code: sstasenko/burstingSNN (GPL-3.0)

Status: code verified, 3 files readable

[36674] doi:10.4103/1673-5374.355755 [paper, data]

Endocannabinoid control of neuroinflammation in traumatic brain injury by monoacylglycerol lipase in astrocytes.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[36675] doi:10.4103/1673-5374.355820 [paper]

Neural progenitor cells derived from fibroblasts induced by small molecule compounds under hypoxia for treatment of Parkinson's disease in rats.

Journal: Neural regeneration research

Status: data only

Sunday, 30 April 2023 (2 papers)

[36676] doi:10.1016/j.celrep.2023.112456 [paper]

The ribosome-associated protein RACK1 represses Kir4.1 translation in astrocytes and influences neuronal activity.

Journal: Cell reports

Status: code on request

[36677] doi:10.3390/s23094426 [paper, data]

Context Recognition Algorithms for Energy-Efficient Freezing-of-Gait Detection in Parkinson's Disease.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 29 April 2023 (12 papers)

[36678] doi:10.1007/s00401-023-02579-9 [paper, repository]

AMFR dysfunction causes autosomal recessive spastic paraplegia in human that is amenable to statin treatment in a preclinical model.

Journal: Acta neuropathologica

Authors' code: barakatlab/AMFR_paper (no license)

Status: code verified, 2 files readable, 2 matches

[36679] doi:10.1016/j.isci.2023.106784 [paper]

Different macaque brain network remodeling after spinal cord injury and NT3 treatment.

Journal: iScience

Status: code on request

[36680] doi:10.1016/j.isci.2023.106791 [paper]

Loss of AMPKα2 promotes melanoma tumor growth and brain metastasis.

Journal: iScience

Status: code on request

[36681] doi:10.1016/j.neuroimage.2023.120143 [paper, data]

The integration of continuous audio and visual speech in a cocktail-party environment depends on attention.

Journal: NeuroImage

Status: data only, 1 dataset cited

[36682] doi:10.1038/s41467-023-38121-4 [paper, repository]

Reconstruction of the cell pseudo-space from single-cell RNA sequencing data with scSpace.

Journal: Nature communications

Authors' code: Zenodo 7830764 (other-open), Zenodo 5511763 (other-open), ZJUFanLab/scSpace (GPL-3.0), Zenodo 7790754 (other-open), almaan/her2st (no license)

Status: code verified, 90 files readable, 21 matches

[36683] doi:10.1038/s41467-023-38190-5 [paper, repository]

Single-neuron mechanisms of neural adaptation in the human temporal lobe.

Journal: Nature communications

Authors' code: rebrowski/neuralAdapatationInMTL (no license)

Status: code verified, 37 files readable, 9 matches

[36684] doi:10.1038/s41537-023-00347-y [paper, repository]

Cortical thinning in relation to impaired insight into illness in patients with treatment resistant schizophrenia.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: CobraLab/minc-bpipe-library (other), ropensci/chlorpromazineR (GPL)

Status: code verified, 24 files readable

[36685] doi:10.1038/s41598-023-33872-y [paper, data]

mTORC2 interactome and localization determine aggressiveness of high-grade glioma cells through association with gelsolin.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36686] doi:10.1038/s42003-023-04827-w [paper, repository]

Reputation risk during dishonest social decision-making modulates anterior insular and cingulate cortex activity and connectivity.

Journal: Communications biology

Authors' code: OSF yk3nx (no license)

Status: code verified, 2 files readable

[36687] doi:10.1038/s42003-023-04852-9 [paper, data]

Regulation of synaptic connectivity in schizophrenia spectrum by mutual neuron-microglia interaction.

Journal: Communications biology

Status: data only, 1 dataset cited

[36688] doi:10.3390/ijms24098059 [paper, data]

Appraising the Role of Astrocytes as Suppliers of Neuronal Glutathione Precursors.

Journal: International journal of molecular sciences

Status: data only, 4 datasets cited

[36689] doi:10.7150/ijms.82677 [paper, data]

Trifluoperazine reduces apoptosis and inflammatory responses in traumatic brain injury by preventing the accumulation of Aquaporin4 on the surface of brain cells.

Journal: International journal of medical sciences

Status: data only, 1 dataset cited

Friday, 28 April 2023 (21 papers)

[36690] doi:10.1007/s00401-023-02568-y [paper, data]

Defects in lysosomal function and lipid metabolism in human microglia harboring a TREM2 loss of function mutation.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[36691] doi:10.1007/s00702-023-02638-1 [paper]

Plasma concentrations of anti-inflammatory cytokine TGF-β are associated with hippocampal structure related to explicit memory performance in older adults.

Journal: Journal of neural transmission (Vienna, Austria : 1996)

Status: code on request

[36692] doi:10.1007/s11042-023-15422-w [paper, data]

Smart brain tumor diagnosis system utilizing deep convolutional neural networks.

Journal: Multimedia tools and applications

Status: data only, 1 dataset cited

[36693] doi:10.1007/s12035-023-03359-y [paper, data]

Type 2 Diabetes (T2DM) and Parkinson's Disease (PD): a Mechanistic Approach.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[36694] doi:10.1016/j.isci.2023.106790 [paper]

Inhibiting neuronal AC1 for treating anxiety and headache in the animal model of migraine.

Journal: iScience

Status: code on request

[36695] doi:10.1016/j.neuron.2023.03.034 [paper, repository]

Mice identify subgoal locations through an action-driven mapping process.

Journal: Neuron

Authors' code: Zenodo 7677456 (CC-BY-4.0), karpathy/reinforcejs (no license), philshams/bonsai-behavior (GPL-3.0), philshams/behavior-opto-analysis (GPL-3.0), philshams/Euclidean_Gridworld_RL (no license)

Status: code verified, 161 files readable, 5 matches

[36696] doi:10.1021/acscentsci.3c00313 [paper, data]

An HR2-Mimicking Sulfonyl-γ-AApeptide Is a Potent Pan-coronavirus Fusion Inhibitor with Strong Blood-Brain Barrier Permeability, Long Half-Life, and Promising Oral Bioavailability.

Journal: ACS central science

Status: data only, 1 dataset cited

[36697] doi:10.1038/s41467-023-38162-9 [paper, data]

Human TRPV1 structure and inhibition by the analgesic SB-366791.

Journal: Nature communications

Status: data only, 3 datasets cited

[36698] doi:10.1038/s41537-023-00341-4 [paper]

Thalamo-cortical circuits during sensory attenuation in emerging psychosis: a combined magnetoencephalography and dynamic causal modelling study.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[36699] doi:10.1038/s41598-023-34165-0 [paper, repository]

Inhibitory neurons control the consolidation of neural assemblies via adaptation to selective stimuli.

Journal: Scientific reports

Authors' code: rbergoin/Phase_models_neural_assemblies (no license)

Status: code verified, 11 files readable

[36700] doi:10.1038/s42003-023-04829-8 [paper, repository]

DNA double-strand break-free CRISPR interference delays Huntington's disease progression in mice.

Journal: Communications biology

Authors' code: chizksh/digenome-toolkit2 (no license)

Status: code verified, 23 files readable

[36701] doi:10.1093/braincomms/fcad118 [paper, repository]

Brain tumour segmentation with incomplete imaging data.

Journal: Brain communications

Authors' code: high-dimensional/tumour-seg (Apache-2.0), MIC-DKFZ/nnUNet (Apache-2.0), Zenodo 7840170 (CC-BY-4.0), Zenodo 7840171 (CC-BY-4.0)

Status: code verified, 240 files readable, 4 matches

[36702] doi:10.1126/sciadv.ade2675 [paper, data]

The genomic landscape of familial glioma.

Journal: Science advances

Status: data only, 2 datasets cited

[36703] doi:10.1186/s12864-023-09322-4 [paper, repository]

Genome-wide identification and characterization of the chemosensory relative protein genes in Rhus gall aphid Schlechtendalia chinensis.

Journal: BMC genomics

Authors' code: jstjohn/SeqPrep (MIT), trinityrnaseq/trinityrnaseq (BSD-3-Clause)

Status: code verified, 495 files readable

[36704] doi:10.1186/s12916-023-02863-1 [paper, repository]

Cross-talks between gut microbiota and tobacco smoking: a two-sample Mendelian randomization study.

Journal: BMC medicine

Authors' code: zdangm/smoking_microbiome (no license)

Status: code verified, 7 files readable, 6 matches

[36705] doi:10.1186/s13072-023-00490-x [paper, repository]

Partial erosion on under-methylated regions and chromatin reprogramming contribute to oncogene activation in IDH mutant gliomas.

Journal: Epigenetics & chromatin

Authors' code: wangxinyush/IDH_phUMR (no license)

Status: code verified, 24 files readable, 12 matches

[36706] doi:10.1186/s40478-023-01571-4 [paper, data]

Patients with sporadic FTLD exhibit similar increases in lysosomal proteins and storage material as patients with FTD due to GRN mutations.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[36707] doi:10.1371/journal.pcbi.1011086 [paper, repository]

The representational hierarchy in human and artificial visual systems in the presence of object-scene regularities.

Journal: PLoS computational biology

Authors' code: OSF u59ez (no license)

Status: empty repository

[36708] doi:10.1371/journal.pone.0271782 [paper, data]

Phenotypic screening using waveform analysis of synchronized calcium oscillations in primary cortical cultures.

Journal: PloS one

Status: data only, 1 dataset cited

[36709] doi:10.3389/fncel.2023.1094503 [paper, data]

Striatal spatial heterogeneity, clustering, and white matter association of GFAP&lt;sup&gt;+&lt;/sup&gt; astrocytes in a mouse model of Huntington's disease.

Journal: Frontiers in cellular neuroscience

Status: data only, 2 datasets cited

[36710] doi:10.3389/fncel.2023.1156144 [paper, data]

Serotonin/GABA receptors modulate odor input to olfactory receptor neuron in locusts.

Journal: Frontiers in cellular neuroscience

Status: data only, 2 datasets cited

Thursday, 27 April 2023 (28 papers, 26 on this page)

[36711] doi:10.1002/epi4.12749 [paper, data]

FKBP5 blockade may provide a new horizon for the treatment of stress-associated disorders: An in-silico study.

Journal: Epilepsia open

Status: data only, 1 dataset cited

[36712] doi:10.1007/s10571-023-01352-6 [paper]

Elabela, a Novel Peptide, Exerts Neuroprotective Effects Against Ischemic Stroke Through the APJ/miR-124-3p/CTDSP1/AKT Pathway.

Journal: Cellular and molecular neurobiology

Status: data only

[36713] doi:10.1016/j.isci.2023.106764 [paper]

Involvement of Mrgprd-expressing nociceptors-recruited spinal mechanisms in nerve injury-induced mechanical allodynia.

Journal: iScience

Status: code on request

[36714] doi:10.1016/j.stemcr.2023.03.018 [paper, repository]

Neuronal silence as a prosurvival factor for adult-born olfactory bulb interneurons.

Journal: Stem cell reports

Authors' code: GaraschukLab/abJGN-Interneuron-Survival-Classification (no license)

Status: code verified, 2 files readable

[36715] doi:10.1016/j.stemcr.2023.04.001 [paper, repository]

Generation, genomic characterization, and differentiation of triploid human embryonic stem cells.

Journal: Stem cell reports

Authors' code: guy-haim/Generation-Genomic-Characterization-and-Differentiation-of-Triploid-Human-Embryonic-Stem-Cells (no license)

Status: code verified, 19 files readable, 8 matches

[36716] doi:10.1016/j.xpro.2023.102245 [paper]

In vivo two-photon calcium imaging of cortical neurons in neonatal mice.

Journal: STAR protocols

Status: code on request

[36717] doi:10.1038/s41380-023-02063-6 [paper]

State-specific alterations in the neural computations underlying inhibitory control in women remitted from bulimia nervosa.

Journal: Molecular psychiatry

Status: code on request

[36718] doi:10.1038/s41467-023-38180-7 [paper, data]

Neural mechanism of acute stress regulation by trace aminergic signalling in the lateral habenula in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[36719] doi:10.1038/s41562-023-01584-y [paper, repository]

Sensory perception relies on fitness-maximizing codes.

Journal: Nature human behaviour

Authors' code: OSF an274 (no license)

Status: code verified, 9 files readable, 1 match

[36720] doi:10.1038/s41598-023-33920-7 [paper, repository]

Generalizability of 3D CNN models for age estimation in diverse youth populations using structural MRI.

Journal: Scientific reports

Authors' code: pypi.org/project/tf-keras-vis (no license), SergioLeonardoMendes/3dcnn_smri_generalization (no license)

Status: code verified, 20 files readable, 5 matches

[36721] doi:10.1038/s43587-023-00405-1 [paper]

Mass spectrometric simultaneous quantification of tau species in plasma shows differential associations with amyloid and tau pathologies.

Journal: Nature aging

Status: code on request

[36722] doi:10.1073/pnas.2216792120 [paper, data]

M₁-selective muscarinic allosteric modulation enhances cognitive flexibility and effective salience in nonhuman primates.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36723] doi:10.1117/1.jbo.28.4.046009 [paper, repository]

Android mobile-platform-based image reconstruction for photoacoustic tomography.

Journal: Journal of biomedical optics

Authors' code: DeeplearningBILAB/Android-mobile-platform-based-image-reconstruction-for-photoacoustic-tomography (CC0-1.0), OSF 6hzwk (no license)

Status: code verified, 4 files readable, 1 match

[36724] doi:10.1186/s12883-023-03217-3 [paper, data]

Sex-dependent gut microbiota-brain-cognition associations: a multimodal MRI study.

Journal: BMC neurology

Status: data only, 1 dataset cited

[36725] doi:10.1186/s12974-023-02781-2 [paper, repository]

Prominent epigenetic and transcriptomic changes in CD4⁺ and CD8⁺ T cells during and after pregnancy in women with multiple sclerosis and controls.

Journal: Journal of neuroinflammation

Authors' code: albertozenere/GraMS (no license)

Status: code verified, 14 files readable, 9 matches

[36726] doi:10.1242/dev.201311 [paper, data]

Post-injury born oligodendrocytes incorporate into the glial scar and contribute to the inhibition of axon regeneration.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[36727] doi:10.1371/journal.pcbi.1010645 [paper, repository]

Dopamine depletion leads to pathological synchronization of distinct basal ganglia loops in the beta band.

Journal: PLoS computational biology

Authors' code: andrea.ortone/basal_ganglia_model (AGPL-3.0), basal-ganglia-model.readthedocs.io (no license)

Status: code verified, 6 files readable, 3 matches

[36728] doi:10.1371/journal.pcbi.1010736 [paper, repository]

Selective control of synaptic plasticity in heterogeneous networks through transcranial alternating current stimulation (tACS).

Journal: PLoS computational biology

Authors' code: arefpz/neuronal_population (GPL-3.0)

Status: code verified, 17 files readable, 1 match

[36729] doi:10.1371/journal.pone.0282813 [paper, data]

Serotonergic modulation of normal and abnormal brain dynamics: The genetic influence of the TPH2 G-703T genotype and DNA methylation on wavelet variance in children and adolescents with and without ADHD.

Journal: PloS one

Status: data only, 1 dataset cited

[36730] doi:10.1523/eneuro.0463-22.2023 [paper]

Parieto-Occipital Electrocortical Dynamics during Real-World Table Tennis.

Journal: eNeuro

Status: code on request

[36731] doi:10.1523/eneuro.0469-22.2023 [paper, repository]

FreiBox: A Versatile Open-Source Behavioral Setup for Investigating the Neuronal Correlates of Behavioral Flexibility via 1-Photon Imaging in Freely Moving Mice.

Journal: eNeuro

Authors' code: Optophys-Lab/FreiBox (no license), moormanlab/miniscope-goodies (no license), FreiBox/FreiBoxPaper (no license)

Status: code verified, 17 files readable, 2 matches

[36732] doi:10.15252/embr.202255556 [paper, data]

Changes in lipid metabolism driven by steroid signalling modulate proteostasis in C. elegans.

Journal: EMBO reports

Status: data only, 1 dataset cited

[36733] doi:10.2196/37269 [paper]

An Emerging Screening Method for Interrogating Human Brain Function: Tutorial.

Journal: JMIR formative research

Status: code on request

[36734] doi:10.3389/fpsyg.2022.788608 [paper, repository]

Virtual reality for the rehabilitation and prevention of intimate partner violence - From brain to behavior: A narrative review.

Journal: Frontiers in psychology

Authors' code: Zenodo 7499456 (no license)

Status: dead link

[36735] doi:10.3390/diagnostics13091562 [paper, data]

Brain Tumor Segmentation Using Deep Learning on MRI Images.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[36736] doi:10.3390/diagnostics13091568 [paper, data]

Cognitive and Behavioral Outcome of Pediatric Low-Grade Central Nervous System Tumors Treated Only with Surgery: A Single Center Experience.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

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