Every paper, by date: page 196

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 196 of 200: 1 July 2022 to 22 June 2022.

Friday, 1 July 2022 (86 papers, 15 on this page)

[43681] doi:10.1590/0100-3984.2021.0111 [paper, data]

Common and uncommon neuroimaging manifestations of ataxia: an illustrated guide for the trainee radiologist. Part 1 - acquired diseases.

Journal: Radiologia brasileira

Status: data only, 2 datasets cited

[43682] doi:10.1590/0100-3984.2021.0112 [paper, data]

Common and uncommon neuroimaging manifestations of ataxia: an illustrated guide for the trainee radiologist. Part 2 - neoplastic, congenital, degenerative, and hereditary diseases.

Journal: Radiologia brasileira

Status: data only, 2 datasets cited

[43683] doi:10.2174/1389202923666220511162038 [paper, data]

Recursive Feature Elimination-based Biomarker Identification for Open Neural Tube Defects.

Journal: Current genomics

Status: data only, 1 dataset cited

[43684] doi:10.24072/pcjournal.156 [paper, repository]

Functional correlates of immediate early gene expression in mouse visual cortex.

Journal: Peer community journal

Authors' code: sourceforge.net/iris-scanning (no license), data.fmi.ch/publicationsupplementrepo (no license)

Status: code verified

[43685] doi:10.24272/j.issn.2095-8137.2022.121 [paper, repository]

Differences in action potential propagation speed and axon initial segment plasticity between neurons from Sprague-Dawley rats and C57BL/6 mice.

Journal: Zoological research

Authors' code: Jessie940611/Action-Potential-Propagation-Velocity-is-Influenced-by-AIS-Plasticity (no license)

Status: code verified, 49 files readable, 4 matches

[43686] doi:10.3389/fnagi.2022.921573 [paper, data]

Patient-Derived Fibroblasts With Presenilin-1 Mutations, That Model Aspects of Alzheimer's Disease Pathology, Constitute a Potential Object for Early Diagnosis.

Journal: Frontiers in aging neuroscience

Status: data only, 2 datasets cited

[43687] doi:10.3389/fnhum.2022.902183 [paper, repository]

Metric Learning in Freewill EEG Pre-Movement and Movement Intention Classification for Brain Machine Interfaces.

Journal: Frontiers in human neuroscience

Authors' code: JihyeBae13/EEG_EGML (no license), luisitobarcito/conditional-entropy-metric-learning (no license)

Status: code verified, 76 files readable, 2 matches

[43688] doi:10.3389/fnins.2022.866735 [paper, repository]

Graph Empirical Mode Decomposition-Based Data Augmentation Applied to Gifted Children MRI Analysis.

Journal: Frontiers in neuroscience

Authors' code: CynthiaChern/GEMD-Based-Data-Augmentation-for-Gifted-Children-MRI-Dataset-Analysis (no license), fkalaganis/graph_emd (CC-BY-4.0)

Status: code verified, 10 files readable, 3 matches

[43689] doi:10.3389/fnins.2022.904931 [paper, repository]

Xenon LFP Analysis Platform Is a Novel Graphical User Interface for Analysis of Local Field Potential From Large-Scale MEA Recordings.

Journal: Frontiers in neuroscience

Authors' code: MicroBrew09/xenon-lfp-analysis (MIT)

Status: code verified, 40 files readable, 11 matches

[43690] doi:10.3389/fnint.2022.857349 [paper, data]

Identification of Prefrontal Cortex and Amygdala Expressed Genes Associated With Sevoflurane Anesthesia on Non-human Primate.

Journal: Frontiers in integrative neuroscience

Status: data only, 1 dataset cited

[43691] doi:10.3389/fnrgo.2022.838136 [paper, data]

Misleading Robot Signals in a Classification Task Induce Cognitive Load as Measured by Theta Synchronization Between Frontal and Temporo-parietal Brain Regions.

Journal: Frontiers in neuroergonomics

Status: data only, 2 datasets cited

[43692] doi:10.3390/brainsci12070876 [paper]

Escalation of Tau Accumulation after a Traumatic Brain Injury: Findings from Positron Emission Tomography.

Journal: Brain sciences

Status: code on request

[43693] doi:10.3390/vision6030040 [paper, data]

Size Constancy Mechanisms: Empirical Evidence from Touch.

Journal: Vision (Basel, Switzerland)

Status: data only, 1 dataset cited

[43694] doi:10.7554/elife.75391 [paper, repository]

Long-term transverse imaging of the hippocampus with glass microperiscopes.

Journal: eLife

Authors' code: ucsb-goard-lab/two-photon-calcium-post-processing (no license), ucsb-goard-lab/HippocampusMicroperiscope (MIT)

Status: code verified, 64 files readable, 12 matches

[43695] doi:10.7554/elife.78055 [paper, data]

Synaptic location is a determinant of the detrimental effects of α-synuclein pathology to glutamatergic transmission in the basolateral amygdala.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 30 June 2022 (27 papers)

[43696] doi:10.1002/glia.24234 [paper, data]

Microglial response promotes neurodegeneration in the Ndufs4 KO mouse model of Leigh syndrome.

Journal: Glia

Status: data only, 2 datasets cited

[43697] doi:10.1002/hbm.25995 [paper, repository]

Transfreq: A Python package for computing the theta-to-alpha transition frequency from resting state electroencephalographic data.

Journal: Human brain mapping

Authors' code: elisabettavallarino.github.io/transfreq (no license)

Status: code verified

[43698] doi:10.1016/j.crneur.2022.100046 [paper, data]

Unraveling the links between neurodegeneration and Epstein-Barr virus-mediated cell cycle dysregulation.

Journal: Current research in neurobiology

Status: data only, 1 dataset cited

[43699] doi:10.1016/j.csbj.2022.06.058 [paper, data]

i-Modern: Integrated multi-omics network model identifies potential therapeutic targets in glioma by deep learning with interpretability.

Journal: Computational and structural biotechnology journal

Status: data only, 1 dataset cited

[43700] doi:10.1016/j.isci.2022.104686 [paper]

Single-nucleus chromatin accessibility and RNA sequencing reveal impaired brain development in prenatally e-cigarette exposed neonatal rats.

Journal: iScience

Status: code on request

[43701] doi:10.1016/j.isci.2022.104692 [paper]

Synaptotagmin 2 is ectopically overexpressed in excitatory presynapses of a widely used CaMKΙΙα-Cre mouse line.

Journal: iScience

Status: code on request

[43702] doi:10.1038/s41420-022-01088-0 [paper, data]

Transcription factor Sp9 is a negative regulator of D1-type MSN development.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[43703] doi:10.1038/s41598-022-15279-3 [paper, data]

Identification of ultra-rare genetic variants in pediatric acute onset neuropsychiatric syndrome (PANS) by exome and whole genome sequencing.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43704] doi:10.1109/tmi.2022.3148728 [paper, repository]

Deep-fUS: A Deep Learning Platform for Functional Ultrasound Imaging of the Brain Using Sparse Data.

Journal: IEEE transactions on medical imaging

Authors' code: todiian/deep-fus (Apache-2.0)

Status: code verified, 8 files readable, 5 matches

[43705] doi:10.1111/ene.15381 [paper, data]

Rapid screening for neglect following stroke: A systematic search and European Academy of Neurology recommendations.

Journal: European journal of neurology

Status: data only, 1 dataset cited

[43706] doi:10.1111/jvim.16472 [paper, data]

Treatment of intracranial neoplasia in dogs using higher doses: A randomized controlled trial comparing a boosted to a conventional radiation protocol.

Journal: Journal of veterinary internal medicine

Status: data only, 1 dataset cited

[43707] doi:10.1126/science.abm1741 [paper, repository]

Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH.

Journal: Science (New York, N.Y.)

Authors' code: Zenodo 6459546 (other-open), r3fang/merlin (MIT)

Status: code verified, 112 files readable

[43708] doi:10.1186/s12987-022-00347-7 [paper, data]

Brain microvascular endothelial cell dysfunction in an isogenic juvenile iPSC model of Huntington's disease.

Journal: Fluids and barriers of the CNS

Status: data only, 2 datasets cited

[43709] doi:10.1371/journal.pdig.0000061 [paper, repository]

A pilot study of the Earable device to measure facial muscle and eye movement tasks among healthy volunteers.

Journal: PLOS digital health

Authors' code: earable-ml/pilot-study-facial-muscle-and-eye-movement-classification (no license)

Status: code verified, 8 files readable, 8 matches

[43710] doi:10.3389/fgene.2022.861428 [paper, data]

Single-Cell RNA Sequencing Reveals Cellular and Transcriptional Changes Associated With Traumatic Brain Injury.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[43711] doi:10.3389/fnagi.2022.921906 [paper]

Establishment and Analysis of a Combined Diagnostic Model of Alzheimer's Disease With Random Forest and Artificial Neural Network.

Journal: Frontiers in aging neuroscience

Status: data only

[43712] doi:10.3389/fnins.2022.841428 [paper, data]

The Effect of Neuroepo on Cognition in Parkinson's Disease Patients Is Mediated by Electroencephalogram Source Activity.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[43713] doi:10.3389/fnins.2022.858989 [paper, data]

Distinct Phenotypes of Inflammation Associated Macrophages and Microglia in the Prefrontal Cortex Schizophrenia Compared to Controls.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[43714] doi:10.3389/fnins.2022.905991 [paper, data]

Importin α3 (KPNA3) Deficiency Augments Effortful Reward-Seeking Behavior in Mice.

Journal: Frontiers in neuroscience

Status: data only, 3 datasets cited

[43715] doi:10.3389/fpsyg.2022.905762 [paper, data]

Explicit Instructions Do Not Enhance Auditory Statistical Learning in Children With Developmental Language Disorder: Evidence From Event-Related Potentials.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[43716] doi:10.3390/biomedicines10071559 [paper, data]

MicroRNA-138-5p Targets Pro-Apoptotic Factors and Favors Neural Cell Survival: Analysis in the Injured Spinal Cord.

Journal: Biomedicines

Status: data only, 2 datasets cited

[43717] doi:10.3390/brainsci12070869 [paper, repository]

Postural Correlates of Pollution Perception.

Journal: Brain sciences

Authors' code: Aura-healthcare/hrv-analysis (GPL-3.0)

Status: code verified, 22 files readable, 2 matches

[43718] doi:10.3390/cells11132087 [paper, data]

Alpha-Synuclein and Its Role in Melanocytes.

Journal: Cells

Status: data only, 1 dataset cited

[43719] doi:10.3390/ijms23137308 [paper]

Comparative Use of Contralateral and Sham-Operated Controls Reveals Traces of a Bilateral Genetic Response in the Rat Brain after Focal Stroke.

Journal: International journal of molecular sciences

Status: data only

[43720] doi:10.4103/jfmpc.jfmpc_1436_21 [paper, data]

Molecular pathways in glioblastoma-derived stem cells to identify effective drug agents: A bioinformatics study.

Journal: Journal of family medicine and primary care

Status: data only, 1 dataset cited

[43721] doi:10.7554/elife.76832 [paper, repository]

State-dependent activity dynamics of hypothalamic stress effector neurons.

Journal: eLife

Authors' code: smestern/ichiyama_2022_code (MIT)

Status: code verified, 32 files readable, 8 matches

[43722] doi:10.7554/elife.80373 [paper, data]

Getting the right cells.

Journal: eLife

Status: data only, 6 datasets cited

Wednesday, 29 June 2022 (31 papers)

[43723] doi:10.1002/gepi.22491 [paper, repository]

Statistical power of transcriptome-wide association studies.

Journal: Genetic epidemiology

Authors' code: RuoyuHe/TWAS_Power_Analysis (no license)

Status: code verified, 16 files readable, 3 matches

[43724] doi:10.1002/hbm.25987 [paper, repository]

Magnetoencephalography can reveal deep brain network activities linked to memory processes.

Journal: Human brain mapping

Authors' code: meg.univ-amu.fr/wiki/anywave (no license)

Status: dead link

[43725] doi:10.1002/hbm.25993 [paper, repository]

Wellbeing and brain structure: A comprehensive phenotypic and genetic study of image-derived phenotypes in the UK Biobank.

Journal: Human brain mapping

Authors' code: dataarchive.unsw.edu.au (no license)

Status: code verified

[43726] doi:10.1007/s10827-022-00824-w [paper, repository]

Weight dependence in BCM leads to adjustable synaptic competition.

Journal: Journal of computational neuroscience

Authors' code: vanrossumlab/weight-dependent-BCM (no license)

Status: code verified, 7 files readable

[43727] doi:10.1016/j.clinsp.2022.100062 [paper, data]

The dual effect of acetate on microglial TNF-α production.

Journal: Clinics (Sao Paulo, Brazil)

Status: data only, 1 dataset cited

[43728] doi:10.1016/j.crmeth.2022.100243 [paper, repository]

Spectral fiber photometry derives hemoglobin concentration changes for accurate measurement of fluorescent sensor activity.

Journal: Cell reports methods

Authors' code: CAMRIatUNC/HemoCorrection (no license), CAMRIatUNC/Photometry-tools (no license)

Status: code verified, 19 files readable

[43729] doi:10.1016/j.xpro.2022.101510 [paper, repository]

Protocols for measuring cold-evoked neural activity and cold tolerance in Drosophila larvae following fictive cold acclimation.

Journal: STAR protocols

Authors' code: CoxLabGSU (no license), CoxLabGSU/OptoBox (GPL-3.0)

Status: code verified, 2 files readable

[43730] doi:10.1038/s41467-022-31272-w [paper]

Distinct nociception processing in the dysgranular and barrel regions of the mouse somatosensory cortex.

Journal: Nature communications

Status: code on request

[43731] doi:10.1038/s41467-022-31347-8 [paper, repository]

A guided multiverse study of neuroimaging analyses.

Journal: Nature communications

Authors' code: Mind-the-Pineapple/into-the-multiverse (BSD-3-Clause)

Status: code verified, 7 files readable, 12 matches

[43732] doi:10.1038/s41467-022-31407-z [paper, repository]

Rhythmic interactions between the mediodorsal thalamus and prefrontal cortex precede human visual perception.

Journal: Nature communications

Authors' code: StaudiglLab/corticothalamic-connect (GPL-3.0), Zenodo 6457779 (other-open)

Status: code verified, 64 files readable, 6 matches

[43733] doi:10.1038/s41531-022-00346-3 [paper, data]

Genomic, transcriptomic, and metabolomic profiles of hiPSC-derived dopamine neurons from clinically discordant brothers with identical PRKN deletions.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[43734] doi:10.1038/s41598-022-14707-8 [paper, repository]

The ventral midline thalamus coordinates prefrontal-hippocampal neural synchrony during vicarious trial and error.

Journal: Scientific reports

Authors' code: GriffinLabCode/GriffinCode (no license)

Status: code verified, 2,000 files readable, 7 matches

[43735] doi:10.1038/s41598-022-14894-4 [paper, data]

A method for AI assisted human interpretation of neonatal EEG.

Journal: Scientific reports

Status: data only, 2 datasets cited

[43736] doi:10.1038/s42003-022-03576-6 [paper, repository]

Unifying turbulent dynamics framework distinguishes different brain states.

Journal: Communications biology

Authors' code: aescrichs/brainstates-turbulence (MIT)

Status: code verified, 10 files readable

[43737] doi:10.1038/s42003-022-03590-8 [paper, data]

Quantum-dot-labeled synuclein seed assay identifies drugs modulating the experimental prion-like transmission.

Journal: Communications biology

Status: data only, 1 dataset cited

[43738] doi:10.1126/sciadv.abn0080 [paper, repository]

Dynamic instability of dendrite tips generates the highly branched morphologies of sensory neurons.

Journal: Science advances

Authors' code: oliviertrottier/neuron-stitch (MIT), doi:10.5061/dryad.fbg79cnx9 (no license), Zenodo 6533876 (GPL-3.0)

Status: code verified, 52 files readable, 4 matches

[43739] doi:10.1126/sciadv.abo7566 [paper, repository]

The impact of C-tactile low-threshold mechanoreceptors on affective touch and social interactions in mice.

Journal: Science advances

Authors' code: fdechaumont/lmt-analysis (GPL-3.0)

Status: code verified, 201 files readable

[43740] doi:10.1155/2022/7571208 [paper, repository]

EEG Feature Extraction Using Evolutionary Algorithms for Brain-Computer Interface Development.

Journal: Computational intelligence and neuroscience

Authors' code: CesarRocha00/evobci (no license)

Status: code verified, 15 files readable, 4 matches

[43741] doi:10.1186/s12987-022-00348-6 [paper, repository]

Acetazolamide modulates intracranial pressure directly by its action on the cerebrospinal fluid secretion apparatus.

Journal: Fluids and barriers of the CNS

Authors' code: Sorennorge/MacAulayLab-RNAseq2-Acetazolamide (no license)

Status: code verified, 8 files readable

[43742] doi:10.1186/s13041-022-00935-6 [paper, data]

Distribution of five clinically important neuroglial proteins in the human brain.

Journal: Molecular brain

Status: data only, 1 dataset cited

[43743] doi:10.1186/s13195-022-01020-9 [paper, repository]

Imipramine and olanzapine block apoE4-catalyzed polymerization of Aβ and show evidence of improving Alzheimer's disease cognition.

Journal: Alzheimer's research & therapy

Authors' code: naccdata.org (no license)

Status: code verified

[43744] doi:10.1186/s13195-022-01033-4 [paper, data]

Genetic prion diseases presenting as frontotemporal dementia: clinical features and diagnostic challenge.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[43745] doi:10.1186/s13229-022-00509-2 [paper, data]

Deletion of Fmr1 in parvalbumin-expressing neurons results in dysregulated translation and selective behavioral deficits associated with fragile X syndrome.

Journal: Molecular autism

Status: data only, 12 datasets cited

[43746] doi:10.15252/embr.202154104 [paper, data]

Developmental cell death of cortical projection neurons is controlled by a Bcl11a/Bcl6-dependent pathway.

Journal: EMBO reports

Status: data only, 1 dataset cited

[43747] doi:10.3389/fgene.2022.875013 [paper]

Novel <i>CNNM2</i> Mutation Responsible for Autosomal-Dominant Hypomagnesemia With Seizure.

Journal: Frontiers in genetics

Status: data only

[43748] doi:10.3389/fnmol.2022.906762 [paper, data]

Expression and Prognostic Role of Glia Maturation Factor-γ in Gliomas.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[43749] doi:10.3390/biology11070988 [paper, data]

Neuronal Depolarization Induced RNA m⁵C Methylation Changes in Mouse Cortical Neurons.

Journal: Biology

Status: data only, 1 dataset cited

[43750] doi:10.3390/biomedicines10071555 [paper, repository]

Obliviate! Reviewing Neural Fundamentals of Intentional Forgetting from a Meta-Analytic Perspective.

Journal: Biomedicines

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable

[43751] doi:10.3758/s13423-022-02124-x [paper, repository]

Explicitly predicting outcomes enhances learning of expectancy-violating information.

Journal: Psychonomic bulletin & review

Authors' code: jashubbard/itrackR (no license), OSF 7e3p4 (no license)

Status: code verified, 21 files readable

[43752] doi:10.7554/elife.75769 [paper, repository]

Waveform detection by deep learning reveals multi-area spindles that are selectively modulated by memory load.

Journal: eLife

Authors' code: mullerlab/spindlecnn (GPL-3.0), akhanf/clinical-atlasreg (MIT)

Status: code verified, 20 files readable, 8 matches

[43753] doi:10.7554/elife.79139 [paper, repository]

Connectomic analysis of the &lt;i&gt;Drosophila&lt;/i&gt; lateral neuron clock cells reveals the synaptic basis of functional pacemaker classes.

Journal: eLife

Authors' code: ClockConnectome/clock-connectome (MIT)

Status: code verified, 10 files readable, 1 match

Tuesday, 28 June 2022 (20 papers)

[43754] doi:10.1007/s00359-022-01559-w [paper]

Non-invasive auditory brainstem responses to FM sweeps in awake big brown bats.

Journal: Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology

Status: code on request

[43755] doi:10.1016/j.neurobiolaging.2022.06.008 [paper, repository]

Predicting future cognitive decline from non-brain and multimodal brain imaging data in healthy and pathological aging.

Journal: Neurobiology of aging

Authors' code: fliem/cpr (no license), NrgXnat/oasis-scripts (no license), hub.docker.com/r/fliem (no license), Zenodo 3726641 (other-open), OSF gynbj (no license)

Status: code verified, 84 files readable, 5 matches

[43756] doi:10.1016/j.neuroimage.2022.119418 [paper, repository]

Accurate predictions of individual differences in task-evoked brain activity from resting-state fMRI using a sparse ensemble learner.

Journal: NeuroImage

Authors' code: yingqiuz/predict-task-individual-variability (GPL-3.0)

Status: code verified, 6 files readable, 4 matches

[43757] doi:10.1038/s41380-022-01641-4 [paper, repository]

Rest-activity rhythms and tract specific white matter lesions in older adults at risk for cognitive decline.

Journal: Molecular psychiatry

Authors' code: jakepalmer (no license)

Status: code verified

[43758] doi:10.1038/s41419-022-05005-2 [paper]

Liver glycogen phosphorylase is upregulated in glioblastoma and provides a metabolic vulnerability to high dose radiation.

Journal: Cell death & disease

Status: code on request

[43759] doi:10.1038/s41467-022-31331-2 [paper, data]

MYCN-driven fatty acid uptake is a metabolic vulnerability in neuroblastoma.

Journal: Nature communications

Status: data only, 1 dataset cited

[43760] doi:10.1038/s41598-022-14584-1 [paper, data]

Effects of animal-assisted psychotherapy incorporating mindfulness and self-compassion in neurorehabilitation: a randomized controlled feasibility trial.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43761] doi:10.1073/pnas.2113749119 [paper, repository]

Transcriptome profiling of kisspeptin neurons from the mouse arcuate nucleus reveals new mechanisms in estrogenic control of fertility.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: solymosin/PRJNA686688_ms_codes (no license)

Status: code verified, 2 files readable, 3 matches

[43762] doi:10.1111/pin.13255 [paper, repository]

Spectrum of paired-like homeobox 2b immunoexpression in pediatric brain tumors with embryonal morphology.

Journal: Pathology international

Authors' code: a-dev-walker/CentroidParser (GPL-3.0)

Status: code verified, 3 files readable, 1 match

[43763] doi:10.1155/2022/7210928 [paper, data]

An Optimized Hyperparameter of Convolutional Neural Network Algorithm for Bug Severity Prediction in Alzheimer's-Based IoT System.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[43764] doi:10.1186/s13046-022-02411-4 [paper, data]

Cleavage of tropomodulin-3 by asparagine endopeptidase promotes cancer malignancy by actin remodeling and SND1/RhoA signaling.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 4 datasets cited

[43765] doi:10.1371/journal.pone.0269972 [paper, data]

A novel cytoskeletal action of xylosides.

Journal: PloS one

Status: data only, 1 dataset cited

[43766] doi:10.3389/fnagi.2022.900350 [paper]

Postoperative Cognitive Dysfunction and Alzheimer's Disease: A Transcriptome-Based Comparison of Animal Models.

Journal: Frontiers in aging neuroscience

Status: data only

[43767] doi:10.3389/fnagi.2022.914017 [paper, data]

Identification of Therapeutic Targets for Amyotrophic Lateral Sclerosis Using PandaOmics - An AI-Enabled Biological Target Discovery Platform.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[43768] doi:10.3389/fninf.2022.912654 [paper, repository]

Modeling the Sequential Pattern Variability of the Electromotor Command System of Pulse Electric Fish.

Journal: Frontiers in neuroinformatics

Authors' code: GNB-UAM/electromotor-nmodel (CC-BY-NC-4.0)

Status: code verified, 154 files readable, 1 match

[43769] doi:10.3389/fnins.2022.807773 [paper, data]

Uncovering a Genetic Polymorphism Located in Huntingtin Associated Protein 1 in Modulation of Central Pain Sensitization Signaling Pathways.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[43770] doi:10.3389/fphys.2022.936982 [paper, repository]

Spatiotemporal Patterns in a General Networked Hindmarsh-Rose Model.

Journal: Frontiers in physiology

Authors' code: zhengqianqian35 (no license)

Status: code verified

[43771] doi:10.3390/brainsci12070848 [paper, data]

Stimulation of GABA Receptors in the Lateral Septum Rapidly Elicits Food Intake and Mediates Natural Feeding.

Journal: Brain sciences

Status: data only, 1 dataset cited

[43772] doi:10.3390/brainsci12070849 [paper, data]

Compensated Integrated Gradients for Reliable Explanation of Electroencephalogram Signal Classification.

Journal: Brain sciences

Status: data only, 3 datasets cited

[43773] doi:10.7554/elife.78203 [paper, repository]

Aberrant cortical development is driven by impaired cell cycle and translational control in a <i>DDX3X</i> syndrome model.

Journal: eLife

Authors' code: bioconductor.org/packages/release (no license)

Status: code verified

Monday, 27 June 2022 (29 papers)

[43774] doi:10.1016/j.isci.2022.104678 [paper, repository]

Label-free cell tracking enables collective motion phenotyping in epithelial monolayers.

Journal: iScience

Authors' code: losertlab/UNet-D2min (Apache-2.0)

Status: code verified, 9 files readable, 3 matches

[43775] doi:10.1016/j.isci.2022.104679 [paper, repository]

Integrated single-cell analyses decode the developmental landscape of the human fetal spine.

Journal: iScience

Authors' code: r3fang/SnapTools (Apache-2.0), ngdc.cncb.ac.cn/gsa (no license), db.cngb.org/cnsa/project (no license)

Status: code verified, 37 files readable

[43776] doi:10.1016/j.nicl.2022.103101 [paper, repository]

Sensitivity of portable low-field magnetic resonance imaging for multiple sclerosis lesions.

Journal: NeuroImage. Clinical

Authors' code: avalcarcel9/mimosa (no license), penn-cnt/Arnold_LF-MRI_MS (GPL-3.0)

Status: code verified, 32 files readable, 17 matches

[43777] doi:10.1016/j.nicl.2022.103102 [paper, repository]

Transient, developmental functional and structural connectivity abnormalities in the thalamocortical motor network in Rolandic epilepsy.

Journal: NeuroImage. Clinical

Authors' code: Hunki-Kwon/Thalamocortical-Connectivity (no license)

Status: code verified, 5 files readable

[43778] doi:10.1016/j.xcrm.2022.100670 [paper]

Clinical, phenotypic and genetic landscape of case reports with genetically proven inherited disorders of vitamin B₁₂ metabolism: A meta-analysis.

Journal: Cell reports. Medicine

Status: code on request

[43779] doi:10.1017/ash.2022.234 [paper, repository]

Prompt control of a <i>Serratia marcescens</i> outbreak in a neonatal intensive care unit informed by whole-genome sequencing and comprehensive infection control intervention package.

Journal: Antimicrobial stewardship & healthcare epidemiology : ASHE

Authors' code: tseemann/nullarbor (GPL-2.0)

Status: code verified, 23 files readable, 1 match

[43780] doi:10.1038/s41380-022-01634-3 [paper, data]

The extracellular matrix and perineuronal nets in memory.

Journal: Molecular psychiatry

Status: data only, 3 datasets cited

[43781] doi:10.1038/s41467-022-30892-6 [paper, repository]

Recovery of neural dynamics criticality in personalized whole-brain models of stroke.

Journal: Nature communications

Authors' code: CorbettaLab/Rodrigo2022NatComm (no license), Zenodo 6459955 (other-open)

Status: code verified, 6 files readable

[43782] doi:10.1038/s41467-022-31368-3 [paper, repository]

Light-induced charge generation in polymeric nanoparticles restores vision in advanced-stage retinitis pigmentosa rats.

Journal: Nature communications

Authors' code: Zenodo 6577009 (other-open), dshmal/nanoextractor (GPL-3.0)

Status: code verified, 10 files readable, 1 match

[43783] doi:10.1038/s41467-022-31436-8 [paper, repository]

The 22q11.2 region regulates presynaptic gene-products linked to schizophrenia.

Journal: Nature communications

Authors' code: Zenodo 6555972 (other-open), alexloboda/ppitools (no license)

Status: code verified, 42 files readable, 2 matches

[43784] doi:10.1038/s41598-022-13679-z [paper, repository]

In vivo closed-loop control of a locust's leg using nerve stimulation.

Journal: Scientific reports

Authors' code: supp:PMC9237135/41598_2022_13679_MOESM5_ESM.c (no license), supp:PMC9237135/41598_2022_13679_MOESM6_ESM.h (no license)

Status: code verified, 2 files readable

[43785] doi:10.1038/s41598-022-14458-6 [paper, repository]

Smartphone-based photogrammetry provides improved localization and registration of scalp-mounted neuroimaging sensors.

Journal: Scientific reports

Authors' code: sbrigadoi/Smartphone-Photogrammetry (MIT)

Status: code verified, 26 files readable, 11 matches

[43786] doi:10.1038/s41598-022-14983-4 [paper, repository]

A general skull stripping of multiparametric brain MRIs using 3D convolutional neural network.

Journal: Scientific reports

Authors' code: plmoer/skull_stripping_code_SR (Apache-2.0)

Status: code verified, 22 files readable, 3 matches

[43787] doi:10.1073/pnas.2116321119 [paper, data]

Movement-dependent electrical stimulation for volitional strengthening of cortical connections in behaving monkeys.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 8 datasets cited

[43788] doi:10.1093/braincomms/fcac170 [paper, data]

Pregabalin improves axon regeneration and motor outcome in a rodent stroke model.

Journal: Brain communications

Status: data only, 1 dataset cited

[43789] doi:10.1111/jsr.13676 [paper]

Optimising sounds for the driving of sleep oscillations by closed-loop auditory stimulation.

Journal: Journal of sleep research

Status: code on request

[43790] doi:10.1117/1.nph.9.4.041410 [paper, repository]

Semiautomated analysis of an optical ATP indicator in neurons.

Journal: Neurophotonics

Authors' code: ashrafilab/SynATP-Analysis (GPL-2.0)

Status: code verified, 2 files readable

[43791] doi:10.1155/2022/1661334 [paper]

Integration of Genetic and Immune Infiltration Insights into Data Mining of Multiple Sclerosis Pathogenesis.

Journal: Computational intelligence and neuroscience

Status: data only

[43792] doi:10.1186/s12915-022-01355-7 [paper]

Highly distinct genetic programs for peripheral nervous system formation in chordates.

Journal: BMC biology

Status: data only

[43793] doi:10.1186/s12974-022-02533-8 [paper, data]

Targeted BRD4 protein degradation by dBET1 ameliorates acute ischemic brain injury and improves functional outcomes associated with reduced neuroinflammation and oxidative stress and preservation of blood-brain barrier integrity.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[43794] doi:10.1371/journal.pcbi.1010239 [paper, repository]

Computational analysis of memory consolidation following inhibitory avoidance (IA) training in adult and infant rats: Critical roles of CaMKIIα and MeCP2.

Journal: PLoS computational biology

Authors' code: modeldb:267364 (no license)

Status: code found, still to be checked

[43795] doi:10.14348/molcells.2022.0044 [paper, data]

RNA Binding Protein Rbms1 Enables Neuronal Differentiation and Radial Migration during Neocortical Development by Binding and Stabilizing the RNA Message for Efr3a.

Journal: Molecules and cells

Status: data only, 1 dataset cited

[43796] doi:10.1523/jneurosci.2476-21.2022 [paper, repository]

Differential Auditory and Visual Phase-Locking Are Observed during Audio-Visual Benefit and Silent Lip-Reading for Speech Perception.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF st6fe (no license)

Status: empty repository

[43797] doi:10.2147/ijn.s361377 [paper, data]

Perampanel Reduces Brain Damage via Induction of M2 Microglia in a Neonatal Rat Stroke Model.

Journal: International journal of nanomedicine

Status: data only, 1 dataset cited

[43798] doi:10.3389/fgene.2022.905047 [paper, data]

Comprehensive Characterization of a Novel E3-Related Gene Signature With Implications in Prognosis and Immunotherapy of Low-Grade Gliomas.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[43799] doi:10.3389/fnagi.2022.917706 [paper, data]

Parkinsonian Syndromes in Motor Neuron Disease: A Clinical Study.

Journal: Frontiers in aging neuroscience

Status: data only, 2 datasets cited

[43800] doi:10.3389/fneur.2022.892480 [paper, data]

Neuroimmune Regulation in Sepsis-Associated Encephalopathy: The Interaction Between the Brain and Peripheral Immunity.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[43801] doi:10.3389/fneur.2022.898728 [paper, repository]

Automated Measurement of Net Water Uptake From Baseline and Follow-Up CTs in Patients With Large Vessel Occlusion Stroke.

Journal: Frontiers in neurology

Authors' code: dharlabwustl/csfratio_nwu (no license)

Status: empty repository, 1 file readable

[43802] doi:10.3389/fninf.2022.884046 [paper, repository]

Modernizing the NEURON Simulator for Sustainability, Portability, and Performance.

Journal: Frontiers in neuroinformatics

Authors' code: app.codecov.io/gh/neuronsimulator (no license), src-d/hercules (Apache-2.0), suny-downstate-medical-center/netpyne (MIT), suny-downstate-medical-center/M1_NEURON_paper (no license)

Status: code verified, 1,096 files readable, 5 matches

Sunday, 26 June 2022 (5 papers)

[43803] doi:10.1007/s13278-022-00890-z [paper, repository]

Fake news spreader detection using trust-based strategies in social networks with bot filtration.

Journal: Social network analysis and mining

Authors' code: BhavtoshRath/Proactive_Spreader_Detection (no license)

Status: code verified, 12 files readable, 3 matches

[43804] doi:10.1016/j.isci.2022.104673 [paper, repository]

Lifespan associations of resting-state brain functional networks with ADHD symptoms.

Journal: iScience

Authors' code: TobousRong/ADHD (no license)

Status: code verified, 6 files readable, 2 matches

[43805] doi:10.1016/j.nbscr.2022.100078 [paper, data]

Endogenous opioid signaling in the retina modulates sleep/wake activity in mice.

Journal: Neurobiology of sleep and circadian rhythms

Status: data only, 1 dataset cited

[43806] doi:10.1186/s12868-022-00724-w [paper, data]

Heat-inactivated Lacticaseibacillus paracasei N1115 alleviates the damage due to brain function caused by long-term antibiotic cocktail exposure in mice.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[43807] doi:10.3390/ijms23137106 [paper, repository]

Vascular Dysfunction Is Central to Alzheimer's Disease Pathogenesis in APOE e4 Carriers.

Journal: International journal of molecular sciences

Authors' code: binfnstats/ROSMAP_RNAseq (no license)

Status: code verified, 7 files readable, 5 matches

Saturday, 25 June 2022 (10 papers)

[43808] doi:10.1002/hbm.25992 [paper]

Pain-related reorganization in the primary somatosensory cortex of patients with postherpetic neuralgia.

Journal: Human brain mapping

Status: code on request

[43809] doi:10.1007/s00401-022-02452-1 [paper, data]

Profiling the neurovascular unit unveils detrimental effects of osteopontin on the blood-brain barrier in acute ischemic stroke.

Journal: Acta neuropathologica

Status: data only, 10 datasets cited

[43810] doi:10.1038/s41386-022-01366-6 [paper, repository]

Misconfigured striatal connectivity profiles in smokers.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: ckorponay/Connectivity-Profile-Misconfiguration (no license)

Status: code verified, 8 files readable

[43811] doi:10.1038/s41467-022-31230-6 [paper, repository]

Echolocation-related reversal of information flow in a cortical vocalization network.

Journal: Nature communications

Authors' code: doi:10.12751/g-node.q6xwhi/ (no license)

Status: dead link

[43812] doi:10.1038/s41467-022-31440-y [paper, repository]

Existing function in primary visual cortex is not perturbed by new skill acquisition of a non-matched sensory task.

Journal: Nature communications

Authors' code: bjjeon5111/BCI_V1 (MIT)

Status: code verified, 5 files readable, 2 matches

[43813] doi:10.1038/s41597-022-01482-4 [paper, data]

A human single-neuron dataset for face perception.

Journal: Scientific data

Status: data only, 1 dataset cited

[43814] doi:10.1111/cns.13899 [paper, data]

Phagocytic microglia and macrophages in brain injury and repair.

Journal: CNS neuroscience & therapeutics

Status: data only, 5 datasets cited

[43815] doi:10.1186/s13148-022-01300-z [paper]

Mitochondrial DNA methylation profiling of the human prefrontal cortex and nucleus accumbens: correlations with aging and drug use.

Journal: Clinical epigenetics

Status: code on request

[43816] doi:10.3390/ijms23137067 [paper, data]

Transcriptome Profiling of the Dorsomedial Prefrontal Cortex in Suicide Victims.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

[43817] doi:10.3390/insects13070579 [paper, data]

The Sensilla-Specific Expression and Subcellular Localization of SNMP1 and SNMP2 Reveal Novel Insights into Their Roles in the Antenna of the Desert Locust <i>Schistocerca gregaria</i>.

Journal: Insects

Status: data only, 5 datasets cited

Friday, 24 June 2022 (30 papers)

[43818] doi:10.1007/s00018-022-04397-w [paper, data]

Can the administration of platelet lysates to the brain help treat neurological disorders?

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[43819] doi:10.1007/s00381-022-05568-7 [paper]

Favourable long-term recovery after decompressive craniectomy: the Northern Finland experience with a predominantly adolescent patient cohort.

Journal: Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery

Status: code on request

[43820] doi:10.1016/j.xpro.2022.101507 [paper]

Expansion microscopy of mouse brain organotypic slice cultures to study protein distribution.

Journal: STAR protocols

Status: code on request

[43821] doi:10.1038/s41467-022-31273-9 [paper, data]

A structural and functional subdivision in central orbitofrontal cortex.

Journal: Nature communications

Status: data only, 1 dataset cited

[43822] doi:10.1038/s41467-022-31340-1 [paper, repository]

Spatiotemporal analysis of glioma heterogeneity reveals COL1A1 as an actionable target to disrupt tumor progression.

Journal: Nature communications

Authors' code: MLNeurosurg/DeepStreams (no license), smotsch/analysis_glioma (GPL-2.0)

Status: code verified, 21 files readable, 3 matches

[43823] doi:10.1038/s41598-022-14090-4 [paper, repository]

Pattern reinstatement and attentional control overlap during episodic long-term memory retrieval.

Journal: Scientific reports

Authors' code: OSF ngdzm (no license)

Status: code verified, 27 files readable, 19 matches

[43824] doi:10.1038/s41598-022-14536-9 [paper, data]

A pupillometric study of developmental and individual differences in cognitive effort in visual word recognition.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43825] doi:10.1038/s41598-022-14604-0 [paper, data]

LXR agonist modifies neuronal lipid homeostasis and decreases PGD2 in the dorsal root ganglia in western diet-fed mice.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43826] doi:10.1038/s41598-022-14930-3 [paper]

Divergent encoding of active avoidance behavior in corticostriatal and corticolimbic projections.

Journal: Scientific reports

Status: code on request

[43827] doi:10.1155/2022/5795189 [paper, data]

A Computational Intelligence Model for Legal Prediction and Decision Support.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[43828] doi:10.1186/s11689-022-09448-8 [paper, repository]

Calculating genetic risk for dysfunction in pleiotropic biological processes using whole exome sequencing data.

Journal: Journal of neurodevelopmental disorders

Authors' code: veatcho/PleiotropyGeneticRiskScores (MIT)

Status: code verified, 3 files readable, 4 matches

[43829] doi:10.1186/s12874-022-01606-9 [paper, data]

Prior test experience confounds longitudinal tracking of adolescent cognitive and motor development.

Journal: BMC medical research methodology

Status: data only, 1 dataset cited

[43830] doi:10.1186/s12877-022-03226-w [paper, data]

The functional connectivity of basal forebrain is associated with superior memory performance in older adults: a case-control study.

Journal: BMC geriatrics

Status: data only, 1 dataset cited

[43831] doi:10.1371/journal.pone.0258570 [paper, data]

Respectfulness-processing revisited: An ERP study of Chinese sentence reading.

Journal: PloS one

Status: data only, 1 dataset cited

[43832] doi:10.1371/journal.pone.0270592 [paper, data]

The structural brain network topology of episodic memory.

Journal: PloS one

Status: data only, 1 dataset cited

[43833] doi:10.3389/fnagi.2022.886575 [paper, data]

&lt;i&gt;Plcg2&lt;sup&gt;M28L&lt;/sup&gt;&lt;/i&gt; Interacts With High Fat/High Sugar Diet to Accelerate Alzheimer's Disease-Relevant Phenotypes in Mice.

Journal: Frontiers in aging neuroscience

Status: data only, 2 datasets cited

[43834] doi:10.3389/fnagi.2022.943436 [paper, data]

Discriminant Subspace Low-Rank Representation Algorithm for Electroencephalography-Based Alzheimer's Disease Recognition.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[43835] doi:10.3389/fnbot.2022.864380 [paper, repository]

Model-Based and Model-Free Replay Mechanisms for Reinforcement Learning in Neurorobotics.

Journal: Frontiers in neurorobotics

Authors' code: MehdiKhamassi/RLwithReplay (BSD-2-Clause), esther-poniatowski/Massi2022 (no license), elimas9/combining_MB_MF_replay (no license)

Status: code verified, 94 files readable, 16 matches

[43836] doi:10.3389/fncir.2022.891825 [paper, repository]

An Open-Source Real-Time Motion Correction Plug-In for Single-Photon Calcium Imaging of Head-Mounted Microscopy.

Journal: Frontiers in neural circuits

Authors' code: ChanghaoStudy/Real-time-Motion-Correction-Plug-In (GPL-3.0)

Status: code verified, 17 files readable, 1 match

[43837] doi:10.3389/fnhum.2022.920538 [paper, repository]

Accounting for Stimulations That Do Not Elicit Motor-Evoked Potentials When Mapping Cortical Representations of Multiple Muscles.

Journal: Frontiers in human neuroscience

Authors' code: armanabraham/Rapid2 (GPL-3.0), marlow17/surfaceanalysis (GPL-3.0)

Status: code verified, 31 files readable, 3 matches

[43838] doi:10.3389/fnins.2022.804125 [paper, data]

A Functional Connectome of Parkinson's Disease Patients Prior to Deep Brain Stimulation: A Tool for Disease-Specific Connectivity Analyses.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[43839] doi:10.3389/fonc.2022.904479 [paper, data]

Abrogation of Rb Tumor Suppression Initiates GBM in Differentiated Astrocytes by Driving a Progenitor Cell Program.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[43840] doi:10.3389/fphar.2022.908830 [paper]

<i>Momordica charantia</i> Exosome-Like Nanoparticles Exert Neuroprotective Effects Against Ischemic Brain Injury <i>via</i> Inhibiting Matrix Metalloproteinase 9 and Activating the AKT/GSK3β Signaling Pathway.

Journal: Frontiers in pharmacology

Status: data only

[43841] doi:10.3390/brainsci12070823 [paper, data]

The Effects of Spatial Attention Focus and Visual Awareness on the Processing of Fearful Faces: An ERP Study.

Journal: Brain sciences

Status: data only, 1 dataset cited

[43842] doi:10.3390/brainsci12070825 [paper, data]

Gene Expression Changes of Murine Cortex Homeostasis in Response to Sleep Deprivation Hint Dysregulated Aging-like Transcriptional Responses.

Journal: Brain sciences

Status: data only, 1 dataset cited

[43843] doi:10.3390/brainsci12070827 [paper]

Computational Analysis of Pathogenetic Pathways in Alzheimer's Disease and Prediction of Potential Therapeutic Drugs.

Journal: Brain sciences

Status: data only

[43844] doi:10.3390/ijms23137051 [paper, data]

Chronically Radiation-Exposed Survivor Glioblastoma Cells Display Poor Response to Chk1 Inhibition under Hypoxia.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[43845] doi:10.3390/s22134764 [paper, data]

Drowsiness Detection Using Ocular Indices from EEG Signal.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[43846] doi:10.5334/joc.229 [paper, repository]

On the Influence of Spatial and Value Attentional Cues Across Individuals.

Journal: Journal of cognition

Authors' code: kel-github/imaging-cert-reward-att-task-code (no license), kel-github/attention-clusters (no license)

Status: code found, still to be checked

[43847] doi:10.7717/peerj.13605 [paper, data]

Contribution of hippocampal BDNF/CREB signaling pathway and gut microbiota to emotional behavior impairment induced by chronic unpredictable mild stress during pregnancy in rats offspring.

Journal: PeerJ

Status: data only, 1 dataset cited

Thursday, 23 June 2022 (45 papers)

[43848] doi:10.1002/hbm.25984 [paper]

Abnormal white-matter rich-club organization in obsessive-compulsive disorder.

Journal: Human brain mapping

Status: code on request

[43849] doi:10.1002/hbm.25985 [paper, repository]

Prediction of childhood maltreatment and subtypes with personalized functional connectome of large-scale brain networks.

Journal: Human brain mapping

Authors' code: hmlicas/Collaborative_Brain_Decomposition (no license), zaixucui/pattern_regression_clean (no license)

Status: code verified, 406 files readable, 3 matches

[43850] doi:10.1002/mrm.29297 [paper, repository]

Iterative static field map estimation for off-resonance correction in non-Cartesian susceptibility weighted imaging.

Journal: Magnetic resonance in medicine

Authors' code: scikit-image/scikit-image (BSD-3-Clause)

Status: code verified, 941 files readable

[43851] doi:10.1007/s00018-022-04364-5 [paper, data]

Coupled fibromodulin and SOX2 signaling as a critical regulator of metastatic outgrowth in melanoma.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[43852] doi:10.1016/j.nicl.2022.103095 [paper, repository]

The progressive loss of brain network fingerprints in Amyotrophic Lateral Sclerosis predicts clinical impairment.

Journal: NeuroImage. Clinical

Authors' code: eamico/Clinical_fingerprinting (no license)

Status: code verified, 6 files readable

[43853] doi:10.1016/j.stemcr.2022.05.015 [paper, data]

Transcription factor-based direct conversion of human fibroblasts to functional astrocytes.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[43854] doi:10.1016/j.xpro.2022.101493 [paper]

Live imaging of Drosophila melanogaster neural stem cells with photo-ablated centrosomes.

Journal: STAR protocols

Status: code on request

[43855] doi:10.1016/j.xpro.2022.101497 [paper, repository]

Simultaneous recording of neuronal and vascular activity in the rodent brain using fiber-photometry.

Journal: STAR protocols

Authors' code: Zenodo 6599234 (other-open), Zenodo 6599442 (other-open), CAMRIatUNC/MakeReference (no license), CAMRIatUNC/HemoCorrection (no license), camriatunc/photometry-tools (no license)

Status: code verified, 39 files readable, 4 matches

[43856] doi:10.1038/s41467-022-30984-3 [paper, repository]

Mnemonic construction and representation of temporal structure in the hippocampal formation.

Journal: Nature communications

Authors' code: jacbel.github.io/virtem_code (no license), Zenodo 6421012 (other-open), jacbel/virtem_code (MIT)

Status: code verified, 78 files readable, 40 matches

[43857] doi:10.1038/s41467-022-31255-x [paper, repository]

An intein-split transactivator for intersectional neural imaging and optogenetic manipulation.

Journal: Nature communications

Authors' code: XuChunLab/IBIST (no license)

Status: code verified, 16 files readable, 2 matches

[43858] doi:10.1038/s41467-022-31342-z [paper, data]

Peripherally restricted transthyretin-based delivery system for probes and therapeutics avoiding opioid-related side effects.

Journal: Nature communications

Status: data only, 1 dataset cited

[43859] doi:10.1038/s41539-022-00130-1 [paper, repository]

Individual differences in frontoparietal plasticity in humans.

Journal: NPJ science of learning

Authors' code: austinboroshok/frontoparietal-plasticity (MIT)

Status: code verified, 198 files readable, 10 matches

[43860] doi:10.1038/s41593-022-01095-5 [paper, repository]

Single-cell transcriptomics and surface epitope detection in human brain epileptic lesions identifies pro-inflammatory signaling.

Journal: Nature neuroscience

Authors' code: Zenodo 6477100 (CC-BY-4.0)

Status: code verified, 3 files readable, 9 matches

[43861] doi:10.1038/s41598-022-11567-0 [paper, repository]

A hybrid biological neural network model for solving problems in cognitive planning.

Journal: Scientific reports

Authors' code: emdgroup/brain_waves_for_planning_problems (Apache-2.0)

Status: code verified, 9 files readable, 6 matches

[43862] doi:10.1038/s41598-022-14659-z [paper, data]

Residential green space and air pollution are associated with brain activation in a social-stress paradigm.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43863] doi:10.1111/ejn.15730 [paper, data]

Formant-invariant voice and pitch representations are pre-attentively formed from constantly varying speech and non-speech stimuli.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[43864] doi:10.1111/ene.15360 [paper, data]

The contribution of neuropathology to multiple sclerosis research.

Journal: European journal of neurology

Status: data only, 3 datasets cited

[43865] doi:10.1155/2022/7171126 [paper]

Identification of Paxillin as a Prognostic Factor for Glioblastoma via Integrated Bioinformatics Analysis.

Journal: BioMed research international

Status: data only

[43866] doi:10.1159/000525291 [paper, data]

Immature Brain Cortical Neurons Have Low Transcriptional Competence to Activate Antiviral Defences and Control RNA Virus Infections.

Journal: Journal of innate immunity

Status: data only, 1 dataset cited

[43867] doi:10.1186/s12864-022-08669-4 [paper, repository]

Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks.

Journal: BMC genomics

Authors' code: Trinotate/Trinotate.github.io (no license), transdecoder/transdecoder (BSD-3-Clause), bbuchfink/diamond (GPL-3.0)

Status: code verified, 522 files readable

[43868] doi:10.1186/s12916-022-02408-y [paper, data]

Identification of novel proteins for lacunar stroke by integrating genome-wide association data and human brain proteomes.

Journal: BMC medicine

Status: data only, 4 datasets cited

[43869] doi:10.1242/dmm.049544 [paper, data]

Snrpb is required in murine neural crest cells for proper splicing and craniofacial morphogenesis.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[43870] doi:10.12688/f1000research.122349.1 [paper, repository]

Case Report: Detailed Clinical Course and Management Plan for Status Epilepticus Pediatric Patient with Resected Choroid Plexus Papilloma: A Case Report and a Single Center Experience.

Journal: F1000Research

Authors' code: figshare 20029580 (CC-BY-4.0)

Status: empty repository

[43871] doi:10.1371/journal.pcbi.1009743 [paper, repository]

Modeling cortical synaptic effects of anesthesia and their cholinergic reversal.

Journal: PLoS computational biology

Authors' code: eniwbola/Modeling_Cortical_Synaptic_Effects_of_Anesthesia_and_their_Cholinergic_Reversal (MIT)

Status: code verified, 7 files readable, 1 match

[43872] doi:10.1371/journal.pcbi.1010159 [paper, repository]

LaDIVA: A neurocomputational model providing laryngeal motor control for speech acquisition and production.

Journal: PLoS computational biology

Authors' code: sites.bu.edu/guentherlab/software (no license)

Status: code verified

[43873] doi:10.1371/journal.pone.0270090 [paper, data]

Construction of a fiber-optically connected MEG hyperscanning system for recording brain activity during real-time communication.

Journal: PloS one

Status: data only, 4 datasets cited

[43874] doi:10.26508/lsa.202201420 [paper, data]

Neuropeptide signalling shapes feeding and reproductive behaviours in male <i>Caenorhabditis elegans</i>.

Journal: Life science alliance

Status: data only, 1 dataset cited

[43875] doi:10.3389/fimmu.2022.917014 [paper, data]

DDOST Correlated with Malignancies and Immune Microenvironment in Gliomas.

Journal: Frontiers in immunology

Status: data only, 3 datasets cited

[43876] doi:10.3389/fninf.2022.835772 [paper, repository]

PyMVPD: A Toolbox for Multivariate Pattern Dependence.

Journal: Frontiers in neuroinformatics

Authors' code: sccnlab/PyMVPD (MIT), sccnlab/pymvpd_lite (MIT)

Status: code verified, 67 files readable, 12 matches

[43877] doi:10.3389/fninf.2022.859309 [paper, repository]

State and Trait Anxiety Share Common Network Topological Mechanisms of Human Brain.

Journal: Frontiers in neuroinformatics

Authors' code: zuoxinian/CCS (GPL-2.0)

Status: code verified, 732 files readable, 3 matches

[43878] doi:10.3389/fnins.2022.851827 [paper, repository]

Improved Interpretability of Brain-Behavior CCA With Domain-Driven Dimension Reduction.

Journal: Frontiers in neuroscience

Authors' code: lzdh/DDRCCA_HCP1200release (CC0-1.0)

Status: code verified, 15 files readable, 1 match

[43879] doi:10.3389/fnins.2022.915934 [paper, data]

The Rise and Fall of Slow Wave Tides: Vacillations in Coupled Slow Wave/Spindle Pairing Shift the Composition of Slow Wave Activity in Accordance With Depth of Sleep.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[43880] doi:10.3389/fonc.2022.783721 [paper, data]

KDELR1 Is an Independent Prognostic Predictor and Correlates With Immunity in Glioma.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[43881] doi:10.3389/fphar.2022.833805 [paper, data]

High-Throughput mRNA Sequencing Reveals Potential Therapeutic Targets of Febuxostat in Secondary Injury After Intracerebral Hemorrhage.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[43882] doi:10.3389/fpsyt.2022.902089 [paper, repository]

Mapping Inter-individual Functional Connectivity Variability in TMS Targets for Major Depressive Disorder.

Journal: Frontiers in psychiatry

Authors' code: griffithslab/HaritaEtAl2022_tms-efield-fc (no license)

Status: code found, still to be checked

[43883] doi:10.3390/biom12070874 [paper, repository]

scEpiLock: A Weakly Supervised Learning Framework for <i>cis</i>-Regulatory Element Localization and Variant Impact Quantification for Single-Cell Epigenetic Data.

Journal: Biomolecules

Authors' code: aicb-ZhangLabs/scEpiLock (no license)

Status: code verified, 999 files readable, 2 matches

[43884] doi:10.3390/biom12070876 [paper, data]

Early Signs of Molecular Defects in iPSC-Derived Neural Stems Cells from Patients with Familial Parkinson's Disease.

Journal: Biomolecules

Status: data only, 1 dataset cited

[43885] doi:10.3390/biomedicines10071491 [paper, data]

Machine Learning Characterization of Ictal and Interictal States in EEG Aimed at Automated Seizure Detection.

Journal: Biomedicines

Status: data only, 3 datasets cited

[43886] doi:10.3390/brainsci12070818 [paper, repository]

Sequence-to-Sequence Voice Reconstruction for Silent Speech in a Tonal Language.

Journal: Brain sciences

Authors' code: espnet/espnet (Apache-2.0), kan-bayashi/ParallelWaveGAN (MIT), nobody132/masr (no license), mpariente/pystoi (MIT), ttslr/python-MCD (no license)

Status: code verified, 2,289 files readable, 6 matches

[43887] doi:10.3390/ijms23136954 [paper, data]

Role of Impaired Mitochondrial Dynamics Processes in the Pathogenesis of Alzheimer's Disease.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[43888] doi:10.3390/ijms23136961 [paper, data]

Lmx1a-Dependent Activation of miR-204/211 Controls the Timing of Nurr1-Mediated Dopaminergic Differentiation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[43889] doi:10.3390/jpm12071029 [paper, repository]

Deep Learning to Detect Triangular Fibrocartilage Complex Injury in Wrist MRI: Retrospective Study with Internal and External Validation.

Journal: Journal of personalized medicine

Authors' code: akousist/tfcc-detection (no license)

Status: code verified, 20 files readable, 2 matches

[43890] doi:10.4266/acc.2021.01795 [paper, data]

Development and internal validation of a nomogram for predicting outcomes in children with traumatic subdural hematoma.

Journal: Acute and critical care

Status: data only, 1 dataset cited

[43891] doi:10.7554/elife.74327 [paper, repository]

Circadian programming of the ellipsoid body sleep homeostat in <i>Drosophila</i>.

Journal: eLife

Authors' code: rpubs.com/eogunlana0827/modified-code-for-analysis (no license)

Status: code verified

[43892] doi:10.7554/elife.76051 [paper, repository]

Cognitive experience alters cortical involvement in goal-directed navigation.

Journal: eLife

Authors' code: harveylab/acquisition2p_class (MIT)

Status: code verified, 145 files readable, 2 matches

Wednesday, 22 June 2022 (26 papers, 12 on this page)

[43893] doi:10.1002/hbm.25980 [paper, repository]

Voxel-wise intermodal coupling analysis of two or more modalities using local covariance decomposition.

Journal: Human brain mapping

Authors' code: hufengling/pIMCo (other), hufengling/IMCo_analyses (no license)

Status: code verified, 577 files readable, 17 matches

[43894] doi:10.1007/s12021-022-09593-4 [paper, repository]

Auto-encoded Latent Representations of White Matter Streamlines for Quantitative Distance Analysis.

Journal: Neuroinformatics

Authors' code: BioMedAnalysis/latenttrack (Apache-2.0)

Status: code verified, 17 files readable, 4 matches

[43895] doi:10.1016/j.dcn.2022.101128 [paper, data]

Giving to others and neural processing during adolescence.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[43896] doi:10.1016/j.isci.2022.104652 [paper]

Vitamin C-reduced graphene oxide improves the performance and stability of multimodal neural microelectrodes.

Journal: iScience

Status: code on request

[43897] doi:10.1021/acsomega.2c01820 [paper, data]

Integrated Transcriptome Profiling Identifies Prognostic Hub Genes as Therapeutic Targets of Glioblastoma: Evidenced by Bioinformatics Analysis.

Journal: ACS omega

Status: data only, 1 dataset cited

[43898] doi:10.1038/s41398-022-02021-w [paper, data]

The evolution of BDNF is defined by strict purifying selection and prodomain spatial coevolution, but what does it mean for human brain disease?

Journal: Translational psychiatry

Status: data only, 2 datasets cited

[43899] doi:10.1038/s41531-022-00341-8 [paper]

Longitudinal trimodal imaging of midbrain-associated network degeneration in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[43900] doi:10.1073/pnas.2122141119 [paper, data]

Action-driven remapping of hippocampal neuronal populations in jumping rats.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43901] doi:10.1073/pnas.2122515119 [paper, data]

Slow oscillations promote long-range effective communication: The key for memory consolidation in a broken-down network.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43902] doi:10.1093/braincomms/fcac166 [paper, repository]

Altered brain rhythms and behaviour in the accelerated ovarian failure mouse model of human menopause.

Journal: Brain communications

Authors' code: dataverse.ucla.edu (no license)

Status: code verified

[43903] doi:10.1098/rsif.2022.0206 [paper, repository]

The transition between acute and chronic infections in light of energy control: a mathematical model of energy flow in response to infection.

Journal: Journal of the Royal Society, Interface

Authors' code: doi:10.6084/m9.figshare.c.6016899 (no license)

Status: code found, still to be checked

[43904] doi:10.1098/rspa.2021.0883 [paper, repository]

Discovery of nonlinear dynamical systems using a Runge-Kutta inspired dictionary-based sparse regression approach.

Journal: Proceedings. Mathematical, physical, and engineering sciences

Authors' code: mpimd-csc/RK4-SinDy (MIT)

Status: code verified, 17 files readable, 3 matches

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