Every paper, by date: page 39

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 39 of 200: 13 January 2026 to 7 January 2026.

Tuesday, 13 January 2026 (43 papers, 32 on this page)

[8513] doi:10.1038/s41531-025-01257-9 [paper, repository]

Alterations of cerebrospinal fluid flow dynamics in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: markvcid.partners.org/markvcid2-protocols-resources (no license), Yutong441/CBSS (no license)

Status: code verified, 27 files readable, 5 matches

[8514] doi:10.1038/s41537-025-00720-z [paper, data]

Cognitive and emotional effects of bilateral prefrontal anodal tDCS and high-frequency tRNS in schizophrenia: a randomized sham-controlled study.

Journal: Schizophrenia (Heidelberg, Germany)

Status: data only, 1 dataset cited

[8515] doi:10.1038/s41598-025-34064-6 [paper, repository]

A novel vision transformer model produces clock drawing test scores as accurate as expert human coders.

Journal: Scientific reports

Authors' code: UM-D-ISL/Clock-drawing-test-coding (CC0-1.0)

Status: empty repository, 1 file readable

[8516] doi:10.1038/s41598-025-34355-y [paper]

Automated characterization of the gray matter white matter distribution demonstrates age-related decline.

Journal: Scientific reports

Status: code on request

[8517] doi:10.1038/s41598-025-34585-0 [paper]

Deep neural collaborative filtering model for personalized travel recommendation.

Journal: Scientific reports

Status: code on request

[8518] doi:10.1038/s41598-026-35783-0 [paper, data]

High-accuracy brain tumor detection method based on deep learning.

Journal: Scientific reports

Status: data only, 1 dataset cited

[8519] doi:10.1038/s41598-026-35826-6 [paper, repository]

Commonalities in gene expression and methylation changes across two rat models of acquired epilepsy.

Journal: Scientific reports

Authors' code: hurlab/richR (GPL-3.0), hurlab/EpilepsyEpigenetics (GPL-3.0)

Status: code verified, 135 files readable, 13 matches

[8520] doi:10.1038/s41598-026-35845-3 [paper, repository]

Handcrafted MRI radiomics of enlarged perivascular spaces and machine learning predict cognitive impairment and sleep disturbance in young adults.

Journal: Scientific reports

Authors' code: simonsf/EPVS-Radiomics-ML (no license)

Status: code verified, 7 files readable, 2 matches

[8521] doi:10.1038/s41698-025-01269-x [paper, repository]

AI-powered segmentation and prognosis with missing MRI in pediatric brain tumors.

Journal: NPJ precision oncology

Authors' code: d3b-center/peds-brain-auto-seg-public (BSD-2-Clause)

Status: code verified, 264 files readable, 2 matches

[8522] doi:10.1038/s42003-026-09525-x [paper, data]

Distinct effects of different Bacteroides strains on depressive-like behavior via a gut-Th1/Th17 cells-brain axis.

Journal: Communications biology

Status: data only, 1 dataset cited

[8523] doi:10.1038/s42003-026-09541-x [paper, repository]

Widefield cortical activity and functional connectivity during motorized locomotion.

Journal: Communications biology

Authors' code: lch199912/TreadmillWidefield (no license), lch199912/widefield_code (no license)

Status: code verified, 11 files readable

[8524] doi:10.1038/s44271-026-00393-z [paper, repository]

Manipulable object processing reveals distinct neural and behavioral signatures for visual, functional, and manipulation properties.

Journal: Communications psychology

Authors' code: OSF 4t6ja (no license)

Status: code verified, 14 files readable, 2 matches

[8525] doi:10.1073/pnas.2510850123 [paper, repository]

Brain glucodynamic variability is an essential feature of the metabolism-cognition relationship.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 9r3qx (no license)

Status: code verified, 2 files readable

[8526] doi:10.1080/19490976.2026.2614030 [paper]

A novel Mediterranean diet-inspired supplement reduces hippocampal amyloid deposits and microglial activation through the modulation of the microbiota gut-brain axis in 5xFAD mice.

Journal: Gut microbes

Status: data only

[8527] doi:10.1093/brain/awag014 [paper, repository]

Study of blood linear RNA nominates CD55 and DLD as early-stage biomarkers for Parkinson's sisease.

Journal: Brain : a journal of neurology

Authors' code: Ibanez-Lab/BloodLinearRNA-ParkinsonsDisease (no license)

Status: code verified, 20 files readable, 9 matches

[8528] doi:10.1093/braincomms/fcag010 [paper, repository]

Mapping heterogeneous region- and tissue-specific brain ageing patterns using quantitative MRI.

Journal: Brain communications

Authors' code: JosePMarques (no license), JosePMarques/MP2RAGE-related-scripts (GPL-3.0)

Status: code verified, 39 files readable

[8529] doi:10.1162/imag.a.1065 [paper]

Brain resilience to targeted attack of resting BOLD networks as a measure of cognitive reserve.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[8530] doi:10.1162/nol.a.208 [paper, repository]

Age-Related Differences in Speech Production and Resting State Functional Network Dynamics.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF 7f695 (no license)

Status: code found, still to be checked

[8531] doi:10.1162/nol.a.214 [paper, repository]

Bilingual Exposure and Sex Shape Developmental Trajectories of Brain Responses to Speech-Sound Features in Infants.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF uxd7b (no license)

Status: code verified, 17 files readable, 6 matches

[8532] doi:10.1162/nol.a.26 [paper, repository]

The Speech Network in Childhood Stuttering: Differences in Functional Connectivity of the Planning and Motor Loops.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: GatesLab/gimme (no license)

Status: code verified, 52 files readable

[8533] doi:10.1177/09226028251410014 [paper, repository]

A Brief Mindfulness Intervention for Pain Management in Fibromyalgia: A Single-arm Open-Label Study.

Journal: Restorative neurology and neuroscience

Authors' code: omeganow/tms-explorer (GPL-3.0)

Status: code verified, 7 files readable, 3 matches

[8534] doi:10.1186/s12911-025-03329-5 [paper, repository]

Accurate and efficient data-driven psychiatric assessment using machine learning.

Journal: BMC medical informatics and decision making

Authors' code: charlie42/diagnosis-predictor (no license)

Status: code verified, 20 files readable, 9 matches

[8535] doi:10.1186/s12974-025-03683-1 [paper, data]

IL-27, a metabolic regulator secreted by astrocytes in response to GLP-1RA OHP2, modulates microglial reprogramming in Alzheimer's disease by regulating cGAS lactylation.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[8536] doi:10.1523/eneuro.0454-25.2025 [paper, repository]

Erratum: Sachs et al., "Emotions in the Brain Are Dynamic and Contextually Dependent: Using Music to Measure Affective Transitions".

Journal: eNeuro

Authors' code: sachsm53 (no license)

Status: code verified

[8537] doi:10.3389/fneur.2025.1617446 [paper, repository]

Deep transfer learning and explainable AI framework for autism spectrum disorder detection across multiple datasets.

Journal: Frontiers in neurology

Authors' code: kaggle.com/competitions/autismdiagnosis (no license)

Status: dead link

[8538] doi:10.3389/fnmol.2025.1743557 [paper, repository]

Gene expression asymmetry in Parkinson's disease: variation of <i>CCT</i> gene expression is correlated with hemisphere specific severity.

Journal: Frontiers in molecular neuroscience

Authors' code: Goralsth/Gene_expression_asymmetry_in_Parkinsons_Disease_Variation_of_CCT (CC0-1.0)

Status: code verified, 3 files readable

[8539] doi:10.3389/fpsyg.2025.1565274 [paper, repository]

Willingness to wait covaries with endogenous variation in cortisol.

Journal: Frontiers in psychology

Authors' code: erlichlab/gpstress (no license), Zenodo 8192007 (other-open)

Status: code verified, 76 files readable

[8540] doi:10.3390/bios16010056 [paper, repository]

Modulation-Based Feature Extraction for Robust Sleep Stage Classification Across Apnea-Based Cohorts.

Journal: Biosensors

Authors' code: Unaiza4/modulation-based-sleep-classification (no license)

Status: code verified, 7 files readable, 10 matches

[8541] doi:10.64898/2026.01.12.26343904 [paper, repository]

Evaluating MRI harmonisation methods with multicentre data from the Psy-ShareD consortium: A comparative analysis

Journal: medRxiv (preprint)

Authors' code: lianruizuo/haca3 (no license), RocaVincent/iguane_harmonization (Apache-2.0), rpomponio/neuroHarmonize (MIT)

Status: code verified, 50 files readable, 4 matches

[8542] doi:10.7554/elife.100851 [paper, repository]

Between-species variation in neocortical sulcal anatomy of the carnivoran brain.

Journal: eLife

Authors' code: BenjaminTendler/DW-SSFP (no license), neurabenn/precon_all (MIT), git.fmrib.ox.ac.uk/neuroecologylab/carnivore-surfaces (no license)

Status: code verified, 53 files readable, 7 matches

[8543] doi:10.7554/elife.106383 [paper, repository]

Hypothalamic deiodinase type-3 establishes the period of circannual interval timing in mammals.

Journal: eLife

Authors' code: CS-Gla/Hamster_seasonal_sci_cs_2024 (GPL-3.0)

Status: code verified, 7 files readable, 2 matches

[8544] doi:10.7554/elife.98254 [paper, repository]

Establishing synthetic ribbon-type active zones in a heterologous expression system.

Journal: eLife

Authors' code: rubenlab/snartomo (MPL-2.0)

Status: code verified, 25 files readable

Monday, 12 January 2026 (50 papers)

[8545] doi:10.1002/adhm.202504167 [paper, repository]

Human Brain Vasculature-on-a-Chip Model Constructed With Microvessels Isolated From Cryopreserved Postmortem Human Brain Tissue.

Journal: Advanced healthcare materials

Authors' code: OGradyLab/NVU-On-A-Chip (no license)

Status: code verified, 2 files readable

[8546] doi:10.1007/s10484-025-09757-3 [paper, data]

The Impact of Stimulus Presentation on Skin Conductance and Potential Implications for Neurofeedback Studies.

Journal: Applied psychophysiology and biofeedback

Status: data only, 1 dataset cited

[8547] doi:10.1016/j.celrep.2025.116621 [paper, repository]

Angiopoietin-2 aggravates Alzheimer's disease by promoting blood-brain barrier dysfunction and neuroinflammation.

Journal: Cell reports

Authors' code: ssun1116/AD_SingleCell (no license)

Status: code verified, 25 files readable, 11 matches

[8548] doi:10.1016/j.celrep.2025.116814 [paper, repository]

Single-cell multiome and enhancer connectome of human retinal pigment epithelium and choroid nominate causal variants in macular degeneration.

Journal: Cell reports

Authors' code: seankwang/RPEchoroid-multiome (no license), ENCODE-DCC/atac-seq-pipeline (MIT), kundajelab/retina-models (MIT)

Status: code verified, 94 files readable, 3 matches

[8549] doi:10.1016/j.molmet.2026.102319 [paper, repository]

Gut microbiota shape diurnal rhythms of amino acid metabolism in the mouse prefrontal cortex.

Journal: Molecular metabolism

Authors' code: thomazbastiaanssen/kronos (no license), thomazbastiaanssen/Tjazi (GPL-3.0)

Status: code verified, 37 files readable, 2 matches

[8550] doi:10.1016/j.neuroimage.2026.121690 [paper, data]

Quantification of planar cortical magnification with optimal transport and topological smoothing.

Journal: NeuroImage

Status: code on request, 2 datasets cited

[8551] doi:10.1016/j.omta.2026.201670 [paper]

Advancing AADC deficiency therapy through MR-guided multisite delivery of AAV2-hAADC to dopaminergic and serotonergic pathways in the brainstem.

Journal: Molecular therapy. Advances

Status: code on request

[8552] doi:10.1016/j.xgen.2025.101125 [paper, repository]

Differential neuronal survival defines a novel axis of sexual dimorphism in the Drosophila brain.

Journal: Cell genomics

Authors' code: aaron-allen/Dmel-adult-central-brain-atlas (no license), Zenodo 17513514 (CC-BY-4.0), JaneliaSciComp/VVDViewer (BSD-3-Clause), SGDDNB/ShinyCell (GPL-3.0), aaron-allen/easyShinyCell (GPL-3.0)

Status: code verified, 1,385 files readable, 7 matches

[8553] doi:10.1038/s41378-025-01117-9 [paper, repository]

Advancing neural interfaces: a framework for the fabrication and characterization of freestanding micro-nanodevices.

Journal: Microsystems & nanoengineering

Authors' code: doi:10.5061/dryad.v6wwpzh7j (no license)

Status: code verified

[8554] doi:10.1038/s41386-025-02312-y [paper, repository]

Network-based analysis of differential white matter connectivity in major depressive disorder with and without comorbid anxiety.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: Zenodo 5346593 (MIT), dutchconnectomelab/simple-brain-plot (no license)

Status: code verified, 6 files readable, 1 match

[8555] doi:10.1038/s41398-025-03803-8 [paper, repository]

Using multimodal cortical parcellations to identify novel regions of the human cerebral cortex associated with cognitive performance.

Journal: Translational psychiatry

Authors' code: bulik/ldsc (GPL-3.0), MRCIEU/TwoSampleMR (other), precimed/pleiofdr (GPL-3.0)

Status: code verified, 150 files readable, 4 matches

[8556] doi:10.1038/s41467-025-67657-w [paper, repository]

Parietal alpha frequency shapes own-body perception by modulating the temporal integration of bodily signals.

Journal: Nature communications

Authors' code: OSF ytga5 (no license), OSF s5p4v (no license)

Status: code verified, 30 files readable, 9 matches

[8557] doi:10.1038/s41467-025-68215-0 [paper, repository]

Time-dependent deployment of medial prefrontal cortical representations in male mice.

Journal: Nature communications

Authors' code: 1804MB/Kvistiani-lab_Dsort (GPL-2.0), codeocean:6312901 (no license)

Status: code verified, 109 files readable, 7 matches

[8558] doi:10.1038/s41531-026-01258-2 [paper, repository]

Data-driven subtyping of early Parkinson's disease via mutual cross-attention fusion of EEG and dual-task gait features.

Journal: NPJ Parkinson's disease

Authors' code: deyuwang126/mutual_crossattention_PDclustering (no license)

Status: code verified, 2 files readable

[8559] doi:10.1038/s41598-026-35728-7 [paper, repository]

A quantitative study of cytotoxic compounds using graph based descriptors and machine learning.

Journal: Scientific reports

Authors' code: Shabbir-Ahmad-1/A-Quantitative-Study-of-Cytotoxic-Compounds (no license)

Status: code verified, 5 files readable

[8560] doi:10.1038/s42003-025-09492-9 [paper]

Psychedelic 5-HT2A agonist increases spontaneous and evoked 5-Hz oscillations in visual and retrosplenial cortex.

Journal: Communications biology

Status: code on request

[8561] doi:10.1038/s42003-026-09512-2 [paper]

Locomotion engages context-dependent motor strategies for head stabilization in primates.

Journal: Communications biology

Status: code on request

[8562] doi:10.1038/s43856-025-01319-2 [paper, repository]

Integrating gut microbiota and violence exposure metrics to classify psychological distress in middle-aged adults.

Journal: Communications medicine

Authors' code: YarinBekor/YaMAS (LGPL-3.0)

Status: code verified, 20 files readable

[8563] doi:10.1073/pnas.2505682122 [paper, repository]

Brain displacement and nonlinear deformation following human spaceflight.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: wangtianyipsy/BDDT (no license)

Status: code verified, 12 files readable, 1 match

[8564] doi:10.1080/17590914.2025.2612034 [paper, repository]

Myelin <i>g</i> Ratios: The Model Is in the Details.

Journal: ASN neuro

Authors' code: Intakhar-Ahmad/NeuroMyelin-G-Ratio-Analysis-Toolkit (MIT)

Status: code verified, 2 files readable

[8565] doi:10.1159/000550415 [paper, data]

Clinical Characterization of Probable Dementia with Lewy Bodies Based on the Initial Clinical Presentation in a Latin American Low- and Middle-Income Country.

Journal: Neuro-degenerative diseases

Status: data only, 1 dataset cited

[8566] doi:10.1162/imag.a.1091 [paper, repository]

Cognitive flexibility and brain network energy in healthy aging: An allostatic perspective from the SENECA model.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: LPNC-LANG/SENECA_network_energy (no license)

Status: code verified, 3 files readable, 1 match

[8567] doi:10.1162/imag.a.1092 [paper, repository]

The link between steady-state EEG and rs-fMRI metrics in healthy young adults: The effect of macrovascular correction.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ZacharyZhong1/MacrovascularCorrectionPipeline (no license)

Status: code verified, 15 files readable, 4 matches

[8568] doi:10.1162/imag.a.1093 [paper]

Cortical processing for the vestibular and visual input of egomotion in macaque monkeys: Separate networks with targeted convergence.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[8569] doi:10.1162/imag.a.1094 [paper, repository]

Local-global functional gradients of the thalamus capturing different aspects of thalamic structure and function.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: koenhaak/congrads (Apache-2.0)

Status: code verified, 5 files readable

[8570] doi:10.1162/imag.a.1095 [paper, data]

Greater neural overlap between motor imagery and working memory than with movement execution: A meta-analytic comparison.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[8571] doi:10.1162/imag.a.1096 [paper, repository]

Considering brain state for individualized functional connectivity-based rTMS.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: halleeshearer/brain_state_tms (no license)

Status: code verified, 10 files readable

[8572] doi:10.1162/imag.a.1098 [paper, repository]

A prior-sampling conditional variational autoencoder for neuroimaging normative modelling: Benchmarking deep learning against statistical approaches.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: maiho24/BrainNormativeCVAE (no license), alawryaguila/normativecVAE (no license)

Status: code verified, 25 files readable, 8 matches

[8573] doi:10.1186/s12929-025-01213-y [paper, data]

Mod-SE(2): a geometric deep learning framework for brain tumor classification and segmentation in MRI images.

Journal: Journal of biomedical science

Status: data only, 3 datasets cited

[8574] doi:10.1186/s13041-025-01266-y [paper, data]

TMEM16A ablation in cholinergic medial habenula neurons induces early-onset schizophrenia-like phenotypes in mice.

Journal: Molecular brain

Status: data only, 1 dataset cited

[8575] doi:10.1371/journal.pbio.3003587 [paper, data]

Synaptic input variation enhances rate coding at the expense of temporal precision in cochlear nucleus neurons.

Journal: PLoS biology

Status: data only, 1 dataset cited

[8576] doi:10.1371/journal.pbio.3003594 [paper, repository]

A single-cell spatiotemporal transcriptomic atlas of mouse prefrontal cortex maps dynamics of intratelencephalic neurons during postnatal development.

Journal: PLoS biology

Authors' code: huggingface.co/spaces/tigerzheng/pfcdev-web (MIT), Zenodo 17964214 (CC-BY-4.0), zhengtiger/pfc_develop (no license)

Status: code verified, 40 files readable, 12 matches

[8577] doi:10.1371/journal.ppat.1013850 [paper, data]

Inapparent maternal ZIKV infection impacts fetal brain development and postnatal behavior.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

[8578] doi:10.3389/fbinf.2025.1697212 [paper, repository]

High-dimensional co-expression network analysis reveals persistent TRH gene expression throughout axolotl telencephalon regeneration.

Journal: Frontiers in bioinformatics

Authors' code: satijalab/seurat (other)

Status: code verified, 136 files readable, 3 matches

[8579] doi:10.3389/fnbeh.2025.1705385 [paper, repository]

Customized SAM-Med3D with multi-view adapter and T2-FLAIR mismatch features for glioma IDH genotyping and grading.

Journal: Frontiers in behavioral neuroscience

Authors' code: mtsams/MTSAM (no license)

Status: code verified, 25 files readable

[8580] doi:10.3389/fncel.2025.1677505 [paper, repository]

Non-hematopoietic erythropoietin splice variant is produced in the diseased human brain and confers neuroprotection.

Journal: Frontiers in cellular neuroscience

Authors' code: bihealth/seasnap-pipeline (no license)

Status: code verified, 65 files readable, 3 matches

[8581] doi:10.3389/fneur.2025.1701499 [paper, repository]

Artificial intelligence in glioma research: a bibliometric analysis of global trends, hotspots, and future directions.

Journal: Frontiers in neurology

Authors' code: Zenodo 17698407 (no license)

Status: dead link

[8582] doi:10.3389/fneur.2025.1716984 [paper, data]

Explainable machine learning for stroke risk prediction: a comparative study with SHAP-based interpretation.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[8583] doi:10.3389/fnhum.2025.1715410 [paper, data]

Exploring physical and functional EEG connectivity with multilayer graph transformer convolutional networks for emotion recognition.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[8584] doi:10.3389/fnins.2025.1713357 [paper, repository]

Cross-recurrence quantification analysis captures inter-brain coupling during naturalistic negotiation: a new dynamic approach for hyperscanning.

Journal: Frontiers in neuroscience

Authors' code: cran.r-project.org/web/packages (no license)

Status: code verified

[8585] doi:10.3389/fnins.2025.1734498 [paper, repository]

FODSeg: a deep learning framework for tract-specific white matter segmentation from full angular distributions.

Journal: Frontiers in neuroscience

Authors' code: ankitajoshi15/FODSeg (no license), MIC-DKFZ/TractSeg (Apache-2.0)

Status: code verified, 114 files readable, 11 matches

[8586] doi:10.3389/fnins.2025.1740153 [paper, repository]

Localization of brain networks activated by acupuncture at anatomically adjacent acupoints in healthy participants: neuroimaging evidence and implications for migraine and stroke.

Journal: Frontiers in neuroscience

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable, 2 matches

[8587] doi:10.3389/frai.2025.1679218 [paper, data]

Improved attention-based PCNN with GhostNet for epilepsy seizure detection using EEG and fMRI modalities: extractive pattern and histogram feature set.

Journal: Frontiers in artificial intelligence

Status: data only, 2 datasets cited

[8588] doi:10.3390/brainsci16010087 [paper, data]

Extracting Weight of Evidence from <i>p</i>-Value via Bayesian Approach to Activation Likelihood Estimation Meta-Analysis.

Journal: Brain sciences

Status: data only, 1 dataset cited

[8589] doi:10.3390/cells15020137 [paper, data]

BAP31 Modulates Mitochondrial Homeostasis Through PINK1/Parkin Pathway in MPTP Parkinsonism Mouse Models.

Journal: Cells

Status: data only, 1 dataset cited

[8590] doi:10.3390/ijms27020749 [paper, data]

Socceromics: A Systematic Review of Omics Technologies to Optimize Performance and Health in Soccer.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[8591] doi:10.3390/life16010105 [paper, data]

Oxytocin Modulates Microglial IL-17-Linked Inflammatory Pathways Through the IL-6/COX-2.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[8592] doi:10.64898/2026.01.09.698719 [paper, repository]

Cross-individual translation of spontaneous zebrafish brain activity through a shared latent representation

Journal: bioRxiv (preprint)

Authors' code: EmeEmu/ZebrafishSharedRBMs (GPL-3.0), birbms2024/bitrainedrbms.jl (no license)

Status: code verified, 32 files readable, 1 match

[8593] doi:10.7554/elife.104808 [paper, repository]

Dilated cardiomyopathy-associated RNA-binding motif protein 20 regulates long pre-mRNAs in neurons.

Journal: eLife

Authors' code: imcf-shareables/3d_spots_count (GPL-3.0)

Status: code verified, 4 files readable

[8594] doi:10.7554/elife.106464 [paper, repository]

A geometric shape regularity effect in the human brain.

Journal: eLife

Authors' code: mathias-sm/AGeometricShapeRegularityEffectHumanBrain (CC0-1.0)

Status: code verified, 79 files readable, 17 matches

Sunday, 11 January 2026 (6 papers)

[8595] doi:10.1038/s41598-026-35140-1 [paper, repository]

Impact of meningioma and glioma on whole-brain dynamics.

Journal: Scientific reports

Authors' code: ajunca/BrainTumor (no license)

Status: code verified, 25 files readable, 6 matches

[8596] doi:10.1093/jamiaopen/ooag001 [paper, repository]

A preliminary evaluation of AFibrisk: digital decision-support platform for atrial fibrillation risk assessment after cryptogenic stroke-a cross-sectional concordance study.

Journal: JAMIA open

Authors' code: joaobrainer/afibrisk (no license)

Status: code verified, 13 files readable, 3 matches

[8597] doi:10.1186/s13041-025-01271-1 [paper, data]

Mycophenolate mofetil reduces the branching of microglial processes.

Journal: Molecular brain

Status: data only, 1 dataset cited

[8598] doi:10.3390/metabo16010065 [paper]

Optical and Microdialysis Monitoring of Succinate Prodrug Treatment in a Rotenone-Induced Model of Mitochondrial Dysfunction in Swine.

Journal: Metabolites

Status: code on request

[8599] doi:10.3390/s26020474 [paper, data]

EEG Signal Classification with Data Augmentation for Epileptic Focus Localization and Deep Sleep Detection.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[8600] doi:10.64898/2026.01.09.26343760 [paper, repository]

Early deviations from normative brain morphology and cortical microstructure in schizophrenia spectrum disorders

Journal: medRxiv (preprint)

Authors' code: ahzhu/eharmonize (no license), NeuroimagingBrainNetworks/cortical_microstructure_in_SSD (GPL-3.0)

Status: code verified, 13 files readable, 4 matches

Saturday, 10 January 2026 (27 papers)

[8601] doi:10.1002/anie.202520854 [paper, repository]

A Novel Acetylcholine Nanosensor for Single Vesicle Storage and Sub-Quantal Exocytosis in Living Neurons and Organoids.

Journal: Angewandte Chemie (International ed. in English)

Authors' code: Zenodo 15279592 (CC-BY-4.0)

Status: code verified, 3 files readable

[8602] doi:10.1007/s11517-025-03498-5 [paper, data]

Evaluation of video background and stimulus transparency in a visual ERP-based BCI under RSVP.

Journal: Medical & biological engineering & computing

Status: data only, 1 dataset cited

[8603] doi:10.1016/j.bpsgos.2026.100689 [paper, repository]

Dynamic Resting-State Network Markers of Disruptive Behavior Problems in Youth.

Journal: Biological psychiatry global open science

Authors' code: EmotionNeuroscienceLab (no license)

Status: code verified

[8604] doi:10.1016/j.ebiom.2025.106105 [paper, repository]

Genetic dissection of serum pro-neurotensin suggests potential causal impact on brain structure.

Journal: EBioMedicine

Authors' code: hakyimlab/MetaXcan (MIT), hakyimlab/summary-gwasimputation (no license)

Status: code verified, 124 files readable, 1 match

[8605] doi:10.1016/j.isci.2026.114674 [paper, repository]

Single-cell transcriptomics revealed molecular vulnerability in a human midbrain-like organoid model of Parkinson's disease.

Journal: iScience

Authors' code: Zenodo 18159210 (CC-BY-4.0), linnarsson-lab/developing-human-brain (BSD-2-Clause), linnarsson-lab/adult-human-brain (BSD-2-Clause), pachterlab/kb_python (BSD-2-Clause), satijalab/seurat (other), jinyueliu0/hmlo (no license)

Status: code verified, 316 files readable, 40 matches

[8606] doi:10.1038/s41467-025-67754-w [paper, repository]

Developmental variations in recurrent spatiotemporal brain propagations from childhood to adulthood.

Journal: Nature communications

Authors' code: thomasyeolab/cbig (MIT), tsb46/complex_pca (MIT), humanbrained/neurodev-cpca (no license)

Status: code verified, 2,011 files readable, 7 matches

[8607] doi:10.1038/s41467-025-67959-z [paper, repository]

Functional implications of polygenic risk for schizophrenia in human neurons.

Journal: Nature communications

Authors' code: cran.r-project.org/package=webgestaltr (no license)

Status: code verified

[8608] doi:10.1038/s41467-025-68277-0 [paper, repository]

Critical scaling of novelty in the cortex.

Journal: Nature communications

Authors' code: plenzd/NoveltyScaling (GPL-3.0)

Status: code verified, 17 files readable, 3 matches

[8609] doi:10.1038/s41537-025-00721-y [paper, data]

Altered neural processing in middle frontal gyrus and cerebellum during temporal recalibration of action-outcome predictions in schizophrenia spectrum disorders.

Journal: Schizophrenia (Heidelberg, Germany)

Status: data only, 1 dataset cited

[8610] doi:10.1038/s41539-025-00399-y [paper]

Fragmented learning from short videos modulates neural activity and connectivity during memory retrieval.

Journal: NPJ science of learning

Status: code on request

[8611] doi:10.1038/s41597-025-06353-2 [paper, repository]

Matched MRI, Segmentations, and Histopathologic Images of Brain Metastases from Primary Lung Cancer.

Journal: Scientific data

Authors' code: Aneja-Lab-Yale/BM-Pathology-Dataset (MIT)

Status: code verified, 4 files readable, 4 matches

[8612] doi:10.1038/s41597-025-06484-6 [paper, data]

Dataset of Oddball Paradigm experiment in the Auditory Cortex and the effect of acetylcholine.

Journal: Scientific data

Status: data only, 3 datasets cited

[8613] doi:10.1038/s41598-025-34414-4 [paper, data]

Energy consumption forecasting in logistics considering environmental and operational constraints using FT-transformer architecture.

Journal: Scientific reports

Status: data only, 2 datasets cited

[8614] doi:10.1038/s41598-025-34447-9 [paper, repository]

Face expectancy cues differentially modulate conflict processing driven by emotional incongruence: an EEG study.

Journal: Scientific reports

Authors' code: Daniel-Agostinho/ESP (no license)

Status: code verified, 17 files readable, 1 match

[8615] doi:10.1038/s41598-025-34951-y [paper, repository]

Multivariate associations of motor performance, sleep quality, depressive symptoms, and grey matter volume in younger and mid-to-older adults.

Journal: Scientific reports

Authors' code: anaston/cca_pls_toolkit (GPL-3.0)

Status: code verified, 104 files readable

[8616] doi:10.1038/s41598-026-35385-w [paper, repository]

TempReasoner: neural temporal graph networks for event timeline construction.

Journal: Scientific reports

Authors' code: AldawsariNLP/TempReasoner (MIT)

Status: code verified, 3 files readable, 10 matches

[8617] doi:10.1038/s42003-025-09509-3 [paper, repository]

Individual identifiability following Procrustes alignment of functional gradients: effect of subspace dimensionality.

Journal: Communications biology

Authors' code: juaml/procrustes_alignment_for_fc_gradients (no license), LeSasse/BrainSpace_release (BSD-3-Clause)

Status: code verified, 183 files readable, 21 matches

[8618] doi:10.1038/s44172-025-00580-6 [paper, repository]

Accelerating CEST MRI through complementary undersampling and multi-offset transformer reconstruction.

Journal: Communications engineering

Authors' code: hb-liu/cest-cu (Apache-2.0)

Status: code verified, 20 files readable, 4 matches

[8619] doi:10.1038/s44172-025-00581-5 [paper, data]

Microengineering of the capillary interface of midbrain dopaminergic neurons to study Parkinson's disease vascular alterations.

Journal: Communications engineering

Status: data only, 1 dataset cited

[8620] doi:10.1093/braincomms/fcaf511 [paper, repository]

Cortical mean diffusivity detects early age-related changes and associates with cognition and plasma biomarkers.

Journal: Brain communications

Authors' code: vmontalb/diffusion-on-surface (no license), operera-cruz/cMD-CTh (no license)

Status: code verified, 7 files readable, 6 matches

[8621] doi:10.1093/braincomms/fcag007 [paper, repository]

Optical coherence tomography angiography reveals insights into complementary vascular and neurodegenerative mechanisms in multiple sclerosis.

Journal: Brain communications

Authors' code: charmaineyam/OCTA-Volumetrics-MS-code-2025-10-BrainComms (MIT)

Status: code verified, 4 files readable, 1 match

[8622] doi:10.1093/noajnl/vdag002 [paper, data]

Epigenetic maintenance of the injury response state in glioblastoma stem cells.

Journal: Neuro-oncology advances

Status: data only, 1 dataset cited

[8623] doi:10.1186/s12964-025-02649-3 [paper, data]

Rho GTPases signaling mediates aggressiveness and differentiation in neuroblastoma tumors.

Journal: Cell communication and signaling : CCS

Status: data only, 1 dataset cited

[8624] doi:10.1186/s12974-025-03665-3 [paper, data]

Selective neuronal restoration of progranulin does not prevent the frontotemporal dementia like-phenotype of progranulin knockout mice.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[8625] doi:10.1186/s13229-025-00700-1 [paper, repository]

Resting state aperiodic and periodic EEG activity in preschool-aged autistic children: differences from neurotypical peers and links to language skills.

Journal: Molecular autism

Authors' code: OSF u3gp4 (no license)

Status: code verified, 30 files readable, 7 matches

[8626] doi:10.64898/2026.01.09.698549 [paper, repository]

Harmonizing the stimulation dose of focal tDCS across target sites

Journal: bioRxiv (preprint)

Authors' code: simnibs/memoslap_utils (GPL-3.0)

Status: code verified, 26 files readable, 5 matches

[8627] doi:10.64898/2026.01.09.698615 [paper, repository]

Autocrine feedback maintains homeostatic neuropeptide expression in a peptidergic hub neuron

Journal: bioRxiv (preprint)

Authors' code: Tierpsy/tierpsy-tracker (MIT)

Status: code verified, 204 files readable

Friday, 9 January 2026 (41 papers)

[8628] doi:10.1002/smmd.70024 [paper, data]

Gut Microbiome Dysbiosis is Associated With Human T-Lymphotropic Virus Type 1 (HTLV-1) Infection and Disease Progression to HTLV-1-Associated Myelopathy/Tropical Spastic Paraparesis: A Cross-Sectional Study.

Journal: Smart medicine

Status: data only, 2 datasets cited

[8629] doi:10.1007/s00422-025-01029-x [paper, repository]

Encoding of movement primitives and body posture through distributed proprioception in walking and climbing insects.

Journal: Biological cybernetics

Authors' code: Zenodo 13827523 (CC-BY-4.0), thomasvanderveen/stickinsectproprioception (MIT)

Status: code verified, 22 files readable, 13 matches

[8630] doi:10.1007/s11263-025-02657-3 [paper, repository]

Are Minimal Radial Distortion Solvers Really Necessary for Relative Pose Estimation?

Journal: International journal of computer vision

Authors' code: kocurvik/rdnet (no license)

Status: code verified, 21 files readable, 4 matches

[8631] doi:10.1016/j.xcrm.2025.102567 [paper, repository]

Anti-IL-15 treatment reduces acute lentivirus inflammation and signaling in the brain.

Journal: Cell reports. Medicine

Authors' code: ncbi.nlm.nih.gov/geo/query (no license)

Status: code verified

[8632] doi:10.1016/j.xhgg.2026.100563 [paper, data]

EEFSEC deficiency underlies a human selenopathy with primary neurodevelopmental origins via midbrain-hindbrain hypoplasia.

Journal: HGG advances

Status: data only, 3 datasets cited

[8633] doi:10.1038/s41398-025-03792-8 [paper, repository]

Building epigenetic risk scores of opioid use disorder: Insights from human postmortem brain data.

Journal: Translational psychiatry

Authors' code: montalvoortizlab/MRS (no license)

Status: code verified, 2 files readable

[8634] doi:10.1038/s41467-025-66222-9 [paper, data]

Sulfatide deficiency-induced astrogliosis and myelin lipid dyshomeostasis are independent of TREM2-mediated microglial activation.

Journal: Nature communications

Status: data only, 1 dataset cited

[8635] doi:10.1038/s41467-025-67752-y [paper, repository]

Antisense oligonucleotides to KIF1A polymorphisms expand targets and rescue patient-derived neurons in vitro.

Journal: Nature communications

Authors' code: Zenodo 17253681 (CC-BY-4.0)

Status: code verified, 3 files readable

[8636] doi:10.1038/s41531-025-01252-0 [paper]

Video-based machine learning models for predicting deep brain stimulation outcomes in Parkinson's disease patients.

Journal: NPJ Parkinson's disease

Status: code on request

[8637] doi:10.1038/s41597-025-06442-2 [paper, repository]

An open fMRI resource for studying human brain function and covert consciousness under anesthesia.

Journal: Scientific data

Authors' code: janghw4/Anesthesia-fMRI-functional-connectivity-and-balance-calculation (no license), Zenodo 17429311 (CC-BY-4.0)

Status: code verified, 12 files readable, 2 matches

[8638] doi:10.1038/s41598-025-34240-8 [paper, data]

Morin improves postoperative cognitive dysfunction by mediating the miR-138-5p/SIRT1 axis to regulate ferroptosis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[8639] doi:10.1038/s41598-025-34688-8 [paper, repository]

Molecular characterization of directly reprogrammed neurons from human fibroblasts using single cell RNA sequencing.

Journal: Scientific reports

Authors' code: seodojin/scRNA-seq-reprogramming-analysis (no license)

Status: code verified, 8 files readable, 15 matches

[8640] doi:10.1038/s41598-025-34783-w [paper, data]

Multivariate synchrosqueezing transform and time-frequency attention for mental workload classification from EEG signals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[8641] doi:10.1038/s41598-026-35175-4 [paper]

Tracking evolving communities in fake news cascades using temporal graphs.

Journal: Scientific reports

Status: code on request

[8642] doi:10.1038/s41598-026-35316-9 [paper, data]

EEG-based classification of alzheimer's disease and frontotemporal dementia using functional connectivity.

Journal: Scientific reports

Status: data only, 1 dataset cited

[8643] doi:10.1038/s42003-025-09450-5 [paper, repository]

Mapping the brain atrophy mediating increased impatience for reward in frontotemporal dementia.

Journal: Communications biology

Authors' code: canlab (no license)

Status: code verified

[8644] doi:10.1073/pnas.2426883123 [paper, repository]

Primate-informed neural network for visual decision-making.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: NeuralModeling/VisMotion (no license)

Status: code verified, 10 files readable, 6 matches

[8645] doi:10.1073/pnas.2503834122 [paper, data]

ACSS2 upregulation enhances neuronal resilience to aging and tau-associated neurodegeneration.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request, 1 dataset cited

[8646] doi:10.1073/pnas.2509564123 [paper, repository]

Assessing cerebral capillary function and stalling using single capillary reporters in ultrasound localization microscopy.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ProvostUltrasoundLab/SingleCapillaryReporters (MIT), Zenodo 18065421 (MIT)

Status: code verified, 4 files readable, 3 matches

[8647] doi:10.1073/pnas.2516608123 [paper, repository]

Mesoscale imaging of the human cerebellum reveals converging regional specialization of its morphology, vasculature, and cytoarchitecture.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: piloubazin/cerebellar-cortex (Apache-2.0)

Status: code verified, 19 files readable, 2 matches

[8648] doi:10.1126/sciadv.ady3891 [paper, data]

GluN2B-specific NMDAR positive allosteric modulation reverses cognitive and behavioral abnormalities in <i>Mecp2</i> and <i>Disc1</i> transgenic mice.

Journal: Science advances

Status: data only, 1 dataset cited

[8649] doi:10.1126/sciadv.aea4540 [paper, repository]

Whole-brain meso-vein imaging in living humans using fast 7-T MRI.

Journal: Science advances

Authors' code: Zenodo 17019403 (BSD-3-Clause), ofgulban/meso-mri_with_3depi (BSD-3-Clause)

Status: code verified, 24 files readable

[8650] doi:10.1152/jn.00505.2025 [paper, repository]

Astrocytes and neurons exhibit partially shared but distinct composite receptive fields for natural stimuli.

Journal: Journal of neurophysiology

Authors' code: Sihao/astro-neuro-rf (no license)

Status: code verified, 14 files readable, 5 matches

[8651] doi:10.1159/000550375 [paper, data]

Psychogenic Nonepileptic Seizures in a Woman of Reproductive Age: The Role of Gender-Specific Stressors.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[8652] doi:10.1162/imag.a.1086 [paper, repository]

Cortical markers of PAS-induced long-term potentiation and depression in the motor system: A TMS-EEG Registered Report.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 48fh3 (no license)

Status: code verified, 2 files readable, 1 match

[8653] doi:10.1172/jci.insight.187716 [paper, data]

Endothelial PROX1 induces blood-brain barrier disruption in the central nervous system.

Journal: JCI insight

Status: data only, 1 dataset cited

[8654] doi:10.1186/s10020-025-01415-y [paper, data]

Structural variations in evolutionary novel genomic regions: new insights into neurodevelopmental disorders by long-read DNA Sequencing.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 1 dataset cited

[8655] doi:10.1186/s12974-025-03680-4 [paper, data]

MicroRNA-29a-5p contributes to neuroinflammation through TLR7.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[8656] doi:10.1186/s13287-026-04904-x [paper, data]

Molecular and functional characterization of GMP-manufactured neural stem cells and their extracellular vesicles for innovative therapeutic applications.

Journal: Stem cell research & therapy

Status: data only, 3 datasets cited

[8657] doi:10.1371/journal.pbio.3003588 [paper, repository]

Sensory sharpening and semantic prediction errors unify competing models of predictive processing in human speech comprehension.

Journal: PLoS biology

Authors' code: OSF snxqm (no license), OSF udszc (no license), OSF re96j (no license), OSF 3pr7t (no license), predcommlab/hearing_is_believing (BSD-3-Clause), FabulousFabs/MVPy (no license)

Status: code verified, 292 files readable, 21 matches

[8658] doi:10.3389/fnagi.2025.1657523 [paper]

Single-cell analysis of microglial activation after traumatic brain injury reveals immune signaling pathways linked to mitochondrial dysfunction and brain aging.

Journal: Frontiers in aging neuroscience

Status: data only

[8659] doi:10.3389/fnagi.2025.1735522 [paper, data]

Exploring rare coding variants in UK biobank: preliminary associations with motor neuron disease.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[8660] doi:10.3389/fnbot.2025.1704111 [paper, data]

AMANet: a data-augmented multi-scale temporal attention convolutional network for motor imagery classification.

Journal: Frontiers in neurorobotics

Status: data only, 1 dataset cited

[8661] doi:10.3389/fnimg.2025.1675960 [paper, repository]

M-ECG: extracting heart signals with a novel computational analysis of magnetoencephalography data.

Journal: Frontiers in neuroimaging

Authors' code: izadysadr/MEG-HRV-Extraction (other)

Status: code verified, 4 files readable, 12 matches

[8662] doi:10.3389/fvets.2025.1734969 [paper]

Omic technology to monitoring resilience and adaptation to exercise and heat stress in endurance horses.

Journal: Frontiers in veterinary science

Status: data only

[8663] doi:10.3390/brainsci16010084 [paper, repository]

TSCL-LwF: A Cross-Subject Emotion Recognition Model via Multi-Scale CNN and Incremental Learning Strategy.

Journal: Brain sciences

Authors' code: 19165517212/TSCL-LwF (no license)

Status: code verified, 3 files readable

[8664] doi:10.3390/ijms27020679 [paper, repository]

Fetal Neuronal Vesicles in the Assessment of Perinatal Brain Dysfunction and Late-Onset Growth Restriction: A Pilot Study.

Journal: International journal of molecular sciences

Authors' code: r-project.org (no license)

Status: code verified

[8665] doi:10.3390/s26020437 [paper, data]

MS-TSEFNet: Multi-Scale Spatiotemporal Efficient Feature Fusion Network.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[8666] doi:10.3390/s26020442 [paper, data]

A Feasibility Study of Using an In-Ear EEG System for a Quantitative Assessment of Stress and Mental Workload.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[8667] doi:10.34133/cbsystems.0451 [paper, repository]

Hemispheric Asymmetry in the Genetic Overlap between Schizophrenia and White Matter Microstructure.

Journal: Cyborg and bionic systems (Washington, D.C.)

Authors' code: precimed/python_convert (GPL-3.0), precimed/pleiofdr (GPL-3.0), biit.cs.ut.ee/gprofiler (no license), josefin-werme/LAVA (no license), bulik/ldsc (GPL-3.0), zyjpp/SCZ_WM (no license)

Status: code verified, 139 files readable, 7 matches

[8668] doi:10.64898/2026.01.09.698629 [paper, repository]

Sex-stratified insights into the genetics of brain volumes in late adulthood

Journal: bioRxiv (preprint)

Authors' code: precimed/mostest (GPL-3.0), bulik/ldsc (GPL-3.0)

Status: code verified, 51 files readable, 2 matches

Thursday, 8 January 2026 (65 papers)

[8669] doi:10.1002/mds.70190 [paper, repository]

Clinical, Genetic, and Imaging Characteristics of SCA27B: Insights from a Large Dutch Cohort.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: joshua21997/FGF14-repeat-expansion (no license)

Status: code verified, 3 files readable

[8670] doi:10.1007/s00011-025-02152-y [paper, data]

Cumulative environmental exposures adversely impact social behaviour and are associated with dysregulation of genes and proteins involved in epigenetic, ribosomal, and immune regulation in male mice.

Journal: Inflammation research : official journal of the European Histamine Research Society ... [et al.]

Status: data only, 1 dataset cited

[8671] doi:10.1007/s10620-026-09667-2 [paper, data]

Children with Autism Spectrum Disorder and Chronic Gastrointestinal Symptoms Have Alterations in Intestinal Neurotransmitter Pathways.

Journal: Digestive diseases and sciences

Status: data only, 1 dataset cited

[8672] doi:10.1007/s12021-025-09764-z [paper, data]

Revealing Structural Brain-Cognition Relationships in Children: A Comparison of Morphometric Similarity and INverse Divergence Networks.

Journal: Neuroinformatics

Status: data only, 1 dataset cited

[8673] doi:10.1016/j.dcn.2026.101670 [paper, repository]

Developmental organization of neural dynamics supporting social processing: Evidence from naturalistic fMRI in children and adults.

Journal: Developmental cognitive neuroscience

Authors' code: wanrou-hu/2026_DCN_Dev-Naturalistic-Social-fMRI (no license)

Status: empty repository, 1 file readable

[8674] doi:10.1016/j.neuron.2025.11.030 [paper, repository]

Tachykinin signaling defines distinct populations of glia in the enteric nervous system.

Journal: Neuron

Authors' code: amuppirala/R-scripts-for-small-intestinal-enteric-glia-analysis-Muppirala-et-al.-2025 (no license), Zenodo 17568161 (CC-BY-4.0), amuppirala/R-scripts-for-small-intestinal-enteric-glia-analysis-Muppirala-et-al.−2025 (no license)

Status: code verified, 8 files readable, 7 matches

[8675] doi:10.1016/j.neurot.2025.e00828 [paper]

Medicinal cannabis plant extract (NTI164) modifies epigenetic, ribosomal, and immune pathways in paediatric acute-onset neuropsychiatric syndrome.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: code on request

[8676] doi:10.1016/j.stemcr.2025.102777 [paper]

Differential synaptic signaling responses in human cortical organoids after photon and proton irradiation.

Journal: Stem cell reports

Status: code on request

[8677] doi:10.1016/j.stemcr.2025.102778 [paper, repository]

A latent activated olfactory stem cell state revealed by single-cell transcriptomic and epigenomic profiling.

Journal: Stem cell reports

Authors' code: koenvandenberge/hbcRegenOE (no license)

Status: code verified, 22 files readable, 11 matches

[8678] doi:10.1016/j.xhgg.2026.100565 [paper]

Recessive AARS1 variants perturb human and mouse development.

Journal: HGG advances

Status: code on request

[8679] doi:10.1038/s41398-025-03717-5 [paper]

Pre-Pulse Inhibition of an escape response in adult fruit fly, Drosophila melanogaster.

Journal: Translational psychiatry

Status: code on request

[8680] doi:10.1038/s41419-025-08213-8 [paper, repository]

Calcium overload induced mitochondrial and lysosomal dysfunction is regulated by Tousled-like kinase in a-synucleinopathy.

Journal: Cell death & disease

Authors' code: alipan.com/s/aqphqenauyv,code:97hx (no license)

Status: code found, still to be checked

[8681] doi:10.1038/s41467-025-67858-3 [paper, repository]

Computational and neural mechanisms underlying the influence of action affordances on value learning.

Journal: Nature communications

Authors' code: Zenodo 17481352 (CC-BY-4.0), sanghyunyi/affordance2025 (no license)

Status: code verified, 235 files readable, 3 matches

[8682] doi:10.1038/s41467-025-68111-7 [paper, data]

Early spatiotemporal dynamics of navigational affordance coding in the dorsal visual cortex.

Journal: Nature communications

Status: code on request, 1 dataset cited

[8683] doi:10.1038/s41467-025-68115-3 [paper, repository]

Longitudinal metabolome profiling from pregnancy through childhood and risk of neurodevelopmental disorders at age 10.

Journal: Nature communications

Authors' code: tiwa1125/Longitudinal_metabolome (Apache-2.0), Zenodo 17340755 (CC-BY-4.0)

Status: code verified, 14 files readable, 3 matches

[8684] doi:10.1038/s41467-025-68130-4 [paper, data]

Dynamins maintain nuclear envelope homeostasis and genome stability.

Journal: Nature communications

Status: data only, 1 dataset cited

[8685] doi:10.1038/s41467-025-68160-y [paper, repository]

Quantitative optical nanoscopy of mitochondrial-derived vesicles in neurons classifies pre-peroxisomal and clearing organelles.

Journal: Nature communications

Authors' code: jonatanalvelid/mitography-public (no license), Zenodo 17831561 (CC-BY-4.0)

Status: code verified, 72 files readable, 4 matches

[8686] doi:10.1038/s41467-025-68163-9 [paper, repository]

Integrative transcriptome-wide association analyses reveal PRKCG-linked GABAergic dysfunction in Fragile X-associated tremor/ataxia syndrome.

Journal: Nature communications

Authors' code: marvinquiet/analysis_code_for_FXTAS (no license), johanzi/RNA-seq_pipeline (MIT)

Status: code verified, 12 files readable, 2 matches

[8687] doi:10.1038/s41528-025-00517-1 [paper]

Ultrasound-transparent neural interfaces for multimodal interaction.

Journal: Npj flexible electronics

Status: code on request

[8688] doi:10.1038/s41531-025-01251-1 [paper]

Propensity-matched multicenter comparison of Parkinson's disease outcomes with and without deep brain stimulation.

Journal: NPJ Parkinson's disease

Status: code on request

[8689] doi:10.1038/s41598-025-34046-8 [paper, repository]

Enhancing time scalability of spiking neural networks with dynamic time constants.

Journal: Scientific reports

Authors' code: takaya-hirano-hayashibeLabo/DynamicTimeConstantSNN (no license)

Status: code verified, 22 files readable, 1 match

[8690] doi:10.1038/s41598-026-35397-6 [paper, repository]

Neural correlates of belief change in political and non-political domains among left-wing individuals confronted with counterarguments.

Journal: Scientific reports

Authors' code: OSF 8gnz6 (no license)

Status: code verified, 4 files readable

[8691] doi:10.1038/s42003-025-09375-z [paper, repository]

Cortical hierarchy and aphasia severity: the sensorimotor-association gradient modulates lesion effects within language-specific networks.

Journal: Communications biology

Authors' code: neurolabusc/nii_preprocess (no license), neurolabusc/MRIcron (BSD-3-Clause), nitrc.org/projects/clinicaltbx (no license), idarangus/calc_lesion_volume_byROI (no license)

Status: code verified, 96 files readable, 6 matches

[8692] doi:10.1038/s42003-025-09469-8 [paper, repository]

Multimodal epigenetic and enhancer network remodeling shape the transcriptional landscape of human beige adipocytes.

Journal: Communications biology

Authors' code: huminglab/maps (GPL-3.0), Zenodo 17625772 (CC-BY-4.0), sarahhp/beige_3d_epigenome (no license)

Status: code verified, 38 files readable, 5 matches

[8693] doi:10.1038/s42003-025-09481-y [paper, repository]

Effects of speech periodicity and speech rate on auditory-motor coupling during speech comprehension.

Journal: Communications biology

Authors' code: OSF zdnfv (no license)

Status: code verified, 5 files readable, 5 matches

[8694] doi:10.1038/s42003-025-09483-w [paper]

Excessive daytime sleepiness in parkinsonism is associated with cortical and basal ganglia beta oscillatory activity.

Journal: Communications biology

Status: code on request

[8695] doi:10.1038/s42003-025-09486-7 [paper, repository]

Data-driven ANN-based visual decoding enables unsupervised functional alignment.

Journal: Communications biology

Authors' code: Zenodo 17845924 (CC-BY-4.0), xinyacheung/neuraldecoding (no license)

Status: code verified, 16 files readable, 3 matches

[8696] doi:10.1038/s42003-025-09490-x [paper, data]

Eleutheroside E alleviates cisplatin-induced ototoxicity by down-regulating MAPK/NF-κB/NLRP3 signaling pathway and inhibiting cochlear cell pyroptosis.

Journal: Communications biology

Status: data only, 2 datasets cited

[8697] doi:10.1038/s42003-025-09498-3 [paper]

Age differences in neural discriminability of rumination and worry.

Journal: Communications biology

Status: code on request

[8698] doi:10.1038/s42003-025-09506-6 [paper, repository]

Neurometabolic rewiring in squid (Sepioteuthis lessoniana) optic lobes drives behavioral plasticity and visual integration under environmental acidification.

Journal: Communications biology

Authors' code: TransDecoder/TransDecoder (BSD-3-Clause), doi:10.5061/dryad.rjdfn2zqz (no license)

Status: code verified, 60 files readable

[8699] doi:10.1038/s42255-025-01424-5 [paper, data]

A catecholamine-independent pathway controlling adaptive adipocyte lipolysis.

Journal: Nature metabolism

Status: data only, 1 dataset cited

[8700] doi:10.1038/s44318-025-00669-w [paper, data]

A non-canonical ARMS-GABARAP interaction modulates dendritic spine formation and synaptic development.

Journal: The EMBO journal

Status: data only, 2 datasets cited

[8701] doi:10.1063/5.0294034 [paper, repository]

Region-dependent mechanical parameters in simulating cerebral atrophy.

Journal: APL bioengineering

Authors' code: BRAINIACS-Group/Brain-Creation-Code (no license), Zenodo 17979899 (CC-BY-4.0)

Status: code verified, 64 files readable, 5 matches

[8702] doi:10.1126/science.adx5781 [paper, repository]

Ontogeny of the spinal cord dorsal horn.

Journal: Science (New York, N.Y.)

Authors' code: ArielLevineLabNINDS/Dorsal_Horn (no license)

Status: code verified, 9 files readable, 12 matches

[8703] doi:10.1162/imag.a.1073 [paper, repository]

Data-driven head model individualization from digitized electrode positions or photogrammetry improves M/EEG source localization accuracy.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: harmening/headmodel_individualization (GPL-3.0), Zenodo 7357674 (other-open), harmening/mrisegmentation (GPL-3.0)

Status: code verified, 45 files readable, 12 matches

[8704] doi:10.1162/imag.a.1074 [paper, repository]

Multiple brain activation patterns underlying successful visual short-term memory across the adult lifespan.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: michellegjansen/neural_pathways_VSTM (no license)

Status: code verified, 8 files readable, 4 matches

[8705] doi:10.1162/imag.a.1085 [paper, data]

Extracting reproducible components from electroencephalographic responses to transcranial magnetic stimulation with group task-related component analysis.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[8706] doi:10.1162/netn.a.38 [paper]

On the virtues and limitations of Granger-causal brain connectivity estimate: Critical analysis using neural mass models.

Journal: Network neuroscience (Cambridge, Mass.)

Status: code on request

[8707] doi:10.1162/netn.a.39 [paper, repository]

Benchmarking overlapping community detection methods for applications in human connectomics.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: DynamicsAndNeuralSystems/OverlappingCommunityDetection_HCP (no license)

Status: code verified, 490 files readable, 18 matches

[8708] doi:10.1162/netn.a.502 [paper, repository]

Perturbations of whole-brain model reveal critical areas related to relapse of early psychosis.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: IraisGar/Perturbations-of-whole-brain-model-reveal-critical-areas-related-to-relapse-of-early-psychosis (no license)

Status: code verified, 8 files readable, 2 matches

[8709] doi:10.1162/netn.a.504 [paper, repository]

Connectivity and function are coupled across cognitive domains throughout the brain.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: CognitionBrainCircuitryLab/Connectivity-and-function-across-domains (MIT)

Status: code verified, 8 files readable, 3 matches

[8710] doi:10.1172/jci193204 [paper, data]

Alcohol use disorder-associated gene FNDC4 alters glutamatergic and GABAergic neurogenesis in neural organoids.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[8711] doi:10.1186/s12967-025-07644-3 [paper]

Mitochondrial dysfunction in the spinal cord contributes to peripheral hypersensitivity in a nitroglycerin-induced migraine model.

Journal: Journal of translational medicine

Status: code on request

[8712] doi:10.1186/s12974-025-03672-4 [paper, data]

Allogeneic MHC-mismatched microglia-like cell replacement as a therapeutic approach for multiple sclerosis.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[8713] doi:10.1186/s12984-025-01806-6 [paper]

Leveraging neural drive to assess hand motor function in individuals with chronic stroke.

Journal: Journal of neuroengineering and rehabilitation

Status: code on request

[8714] doi:10.1186/s12987-025-00755-5 [paper, repository]

MicroRNA210 regulated brain pericyte dysfunction exacerbates hypoxic-ischemic brain injury in neonatal mice.

Journal: Fluids and barriers of the CNS

Authors' code: BGI-flexlab/SOAPnuke (GPL-3.0)

Status: code verified, 34 files readable, 1 match

[8715] doi:10.1186/s12987-025-00756-4 [paper, repository]

Neurovascular and metabolic dysfunction with cell type-specific transcriptomic changes in presymptomatic 5XFAD mice.

Journal: Fluids and barriers of the CNS

Authors' code: nasunlab/5xFAD (no license)

Status: code verified, 12 files readable, 2 matches

[8716] doi:10.1186/s13293-025-00818-0 [paper, data]

The impact of testosterone on paraventricular nucleus gene expression in male and female spontaneously hypertensive rats.

Journal: Biology of sex differences

Status: data only, 1 dataset cited

[8717] doi:10.1186/s40478-025-02219-1 [paper, data]

Mapping the secondary response to traumatic brain injury using spatial transcriptomics shows acute 4-aminopyridine treatment mitigates axonal and molecular pathology.

Journal: Acta neuropathologica communications

Status: data only, 4 datasets cited

[8718] doi:10.1186/s41016-025-00423-5 [paper, repository]

Radiomics-based machine learning model for predicting secondary decompressive craniectomy in TBI patients after emergent craniotomy with bone flap replacement.

Journal: Chinese neurosurgical journal

Authors' code: DrSunZY/Secondary-DC (no license)

Status: code verified, 4 files readable, 1 match

[8719] doi:10.1242/dev.205054 [paper, repository]

Axonal defasciculation is restricted to specific branching points during regeneration of the lateral line nerve in zebrafish.

Journal: Development (Cambridge, England)

Authors' code: rsroy27/CollagenXVIII_2025_Manuscript (no license)

Status: empty repository, 1 file readable

[8720] doi:10.1371/journal.pone.0338934 [paper, data]

Inter-brain ERPs alignment during a joint Simon task: An EEG hyperscanning study.

Journal: PloS one

Status: data only, 2 datasets cited

[8721] doi:10.2147/jir.s566227 [paper]

Integrated Multi-Omics Profiling Identifies CD84-Associated Microglial Alterations in Focal Cortical Dysplasia Type II.

Journal: Journal of inflammation research

Status: data only

[8722] doi:10.3389/fmed.2025.1713062 [paper, data]

A dual-model AI framework for Alzheimer's disease diagnosis using clinical and MRI data.

Journal: Frontiers in medicine

Status: code on request, 2 datasets cited

[8723] doi:10.3389/fnsys.2025.1713434 [paper, repository]

Network-based mapping and neurotransmitter architecture of gray matter correlates of neuroticism.

Journal: Frontiers in systems neuroscience

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable

[8724] doi:10.3389/fpsyg.2025.1699740 [paper, repository]

Successive-cyclic movement in humans and neural language models: testing wh-filler-gap dependencies.

Journal: Frontiers in psychology

Authors' code: OSF gpc9h (no license)

Status: code verified, 2 files readable

[8725] doi:10.3389/frai.2025.1700214 [paper, data]

Explainable AI-driven MRI-based brain tumor classification: a novel deep learning approach.

Journal: Frontiers in artificial intelligence

Status: data only, 2 datasets cited

[8726] doi:10.3390/s26020399 [paper, data]

Enhancing EEG Decoding with Selective Augmentation Integration.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[8727] doi:10.3758/s13415-025-01382-1 [paper, repository]

Individual differences in the empathic experience of pain: An EEG and machine learning approach.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF f2p9b (no license)

Status: code verified, 1 file readable, 3 matches

[8728] doi:10.3758/s13415-025-01385-y [paper, repository]

Imagery-based fear conditioning enhances the late positive potential.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF f36jb (no license)

Status: code verified, 26 files readable, 8 matches

[8729] doi:10.64898/2026.01.07.697914 [paper, repository]

Mapping subcortical fear pathways in the human brain: thalamo-amygdala connections revealed by high-resolution tractography

Journal: bioRxiv (preprint)

Authors' code: scilus/scilpy (MIT)

Status: code verified, 601 files readable, 4 matches

[8730] doi:10.64898/2026.01.08.698257 [paper, repository]

Human Neocortical Glutamatergic Neurons Revealed Through Multimodal Profiling

Journal: bioRxiv (preprint)

Authors' code: AllenInstitute/mfishtools (BSD-2-Clause), AllenInstitute (no license), AllenInstitute/human_patchseq_excitatory (BSD-2-Clause), AllenInstitute/skeleton_keys (BSD-2-Clause), AllenInstitute/ccf_streamlines (BSD-2-Clause), matthewMallory/morph_utils (no license)

Status: code verified, 122 files readable, 13 matches

[8731] doi:10.7554/elife.103512 [paper, repository]

Barcode activity in a recurrent network model of the hippocampus enables efficient memory binding.

Journal: eLife

Authors' code: chingf/barcodes (no license)

Status: code verified, 40 files readable, 1 match

[8732] doi:10.7554/elife.104921 [paper, repository]

Phase-specific premotor inhibition modulates leech rhythmic motor output.

Journal: eLife

Authors' code: doi:10.5061/dryad.ksn02v7jv (no license)

Status: code verified

[8733] doi:10.7554/elife.98047 [paper, repository]

Reconstructing voice identity from noninvasive auditory cortex recordings.

Journal: eLife

Authors' code: Zenodo 15797933 (CC-BY-4.0)

Status: code verified, 85 files readable, 18 matches

Wednesday, 7 January 2026 (51 papers, 3 on this page)

[8734] doi:10.1002/advs.202517834 [paper, data]

Data-Driven Feedback Identifies Focused Ultrasound Exposure Regimens for Improved Nanotheranostic Targeting of the Brain.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 2 datasets cited

[8735] doi:10.1002/eat.70023 [paper]

Neurofeedback for Binge-Eating Disorder: Neurophysiological Outcome Predictors and Rapid Response.

Journal: The International journal of eating disorders

Status: code on request

[8736] doi:10.1007/s00018-025-06003-1 [paper, data]

RRx-001 ameliorates astrocyte pyroptosis by regulating LCN2-NLRP3 inflammasome activation in an MPTP-induced parkinson's disease mouse model.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

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