Every paper, by date: page 40

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 40 of 200: 7 January 2026 to 1 January 2026.

Wednesday, 7 January 2026 (51 papers, 48 on this page)

[8737] doi:10.1007/s00415-025-13584-1 [paper, repository]

The differential effect of chronological age and brain age on cognitive fatigue: new metrics, new insights.

Journal: Journal of neurology

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable, 2 matches

[8738] doi:10.1007/s00422-025-01030-4 [paper, repository]

Task success in trained spiking neural network models coincides with emergence of cross-stimulus-modulated inhibition.

Journal: Biological cybernetics

Authors' code: doi:10.12751/nncn.bc2024.313 (no license), doi:10.12751/nncn.bc2024.128 (no license)

Status: code verified

[8739] doi:10.1016/j.acra.2025.12.028 [paper, repository]

Diffusion Model-Based Motion Correction in Portable Computed Tomography for Brain: A Human Observer Study.

Journal: Academic radiology

Authors' code: zhennongchen/Diffusion_for_CT_motion (no license)

Status: code verified, 93 files readable, 3 matches

[8740] doi:10.1016/j.celrep.2025.116790 [paper, data]

A human tumor-immune organoid model of glioblastoma.

Journal: Cell reports

Status: code on request, 1 dataset cited

[8741] doi:10.1016/j.celrep.2025.116792 [paper, repository]

Cell-type-selective synaptogenesis during the development of layer 6 corticothalamic neuron connectivity in the mammalian neocortex.

Journal: Cell reports

Authors' code: Zenodo 17683276 (CC-BY-4.0), alangutmanwei/l6cthns (no license)

Status: code verified, 14 files readable, 3 matches

[8742] doi:10.1016/j.isci.2025.114590 [paper]

Encoding of odor information and reward anticipation in anterior cortical amygdaloid nucleus.

Journal: iScience

Status: code on request

[8743] doi:10.1016/j.jbc.2026.111131 [paper, data]

Structural basis and functional analysis of NMDA receptor regulation by calmodulin.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[8744] doi:10.1016/j.jbc.2026.111140 [paper, data]

Enzymatic basis of branching and extension of O-Man glycans for keratan sulfate biosynthesis.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[8745] doi:10.1016/j.nicl.2026.103944 [paper, data]

Striatal dopamine synthesis capacity in Parkinson's disease: Effects of age, sex, and body mass index in a large [<sup>18</sup>F]fluorodopa PET cohort.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[8746] doi:10.1016/j.xinn.2026.101261 [paper, repository]

Direct mapping of neural activity via glutamate-weighted magnetic resonance imaging.

Journal: Innovation (Cambridge (Mass.))

Authors' code: Zenodo 17695956 (CC-BY-4.0)

Status: code verified, 23 files readable, 1 match

[8747] doi:10.1038/s41467-025-66988-y [paper, repository]

A Machine Learning-Driven Electrophysiological Platform for Real-Time Tumor-Neural Interaction Analysis and Modulation.

Journal: Nature communications

Authors' code: BingzheXu/BioDecoder (GPL-3.0)

Status: code verified, 5 files readable

[8748] doi:10.1038/s41467-025-67459-0 [paper, repository]

Accumbal calcium-permeable AMPA receptors orchestrate neuronal ensembles underlying social attachment.

Journal: Nature communications

Authors' code: Aharoni-Lab/Miniscope-DAQ-QT-Software (GPL-3.0), zivlab/CellReg (GPL-2.0), petersaj/AP_histology (GPL-3.0), donaldsonlab/NAcInhib (Apache-2.0)

Status: code verified, 176 files readable, 22 matches

[8749] doi:10.1038/s41467-025-67783-5 [paper, repository]

Drug and single-cell gene expression integration identifies sensitive and resistant glioblastoma cell populations.

Journal: Nature communications

Authors' code: AyadLab/scFOCAL (no license), AyadLab/scFOCAL-dataProcessing (no license), AyadLab/ISOSCELES-dataProcessing (no license), AyadLab/ISOSCELES (no license), Zenodo 17555928 (CC-BY-4.0)

Status: code verified, 39 files readable, 20 matches

[8750] doi:10.1038/s41467-025-68094-5 [paper, repository]

Disturbances of paraventricular thalamic nucleus neurons in bipolar disorder revealed by single-nucleus analysis.

Journal: Nature communications

Authors' code: msk240/BDsnRNAseq (no license), Zenodo 17845882 (CC-BY-4.0)

Status: code verified, 16 files readable, 9 matches

[8751] doi:10.1038/s41467-025-68118-0 [paper, data]

Brain and neural cell type proteomics reveal extracellular matrix proteins enriched in progressive multiple sclerosis.

Journal: Nature communications

Status: data only, 1 dataset cited

[8752] doi:10.1038/s41540-025-00642-7 [paper, repository]

Mathematical modeling of combinatorial antigen targeting with multiple CAR T-cell products for glioblastoma treatment.

Journal: NPJ systems biology and applications

Authors' code: tony1747/Physicell_Project (no license)

Status: code verified, 60 files readable, 4 matches

[8753] doi:10.1038/s41586-025-09784-4 [paper, repository]

Surface optimization governs the local design of physical networks.

Journal: Nature

Authors' code: Barabasi-Lab/min-surf-netw (GPL-3.0)

Status: code verified, 6 files readable

[8754] doi:10.1038/s41586-025-09885-0 [paper, repository]

Evidence accumulation from experience and observation in the cingulate cortex.

Journal: Nature

Authors' code: jazlab/RC_SR_NV_SBY_MJ_2025 (MIT)

Status: code verified, 119 files readable, 5 matches

[8755] doi:10.1038/s41586-025-09888-x [paper, repository]

Plastic landmark anchoring in zebrafish compass neurons.

Journal: Nature

Authors' code: portugueslab/Tanaka_2025_landmark (no license)

Status: code verified, 14 files readable, 19 matches

[8756] doi:10.1038/s41586-025-09908-w [paper, repository]

Mimicking opioid analgesia in cortical pain circuits.

Journal: Nature

Authors' code: justin05423/LUPE-2.0-NotebookAnalysisPackage (BSD-3-Clause)

Status: code verified, 67 files readable, 9 matches

[8757] doi:10.1038/s41586-025-09910-2 [paper, repository]

Distinct neuronal populations in the human brain combine content and context.

Journal: Nature

Authors' code: mabausch/ContentContextNeurons (MIT)

Status: code verified, 20 files readable, 13 matches

[8758] doi:10.1038/s41598-025-33957-w [paper, data]

Enhancing Alzheimer's disease classification with a transformer-based model using self-supervised learning.

Journal: Scientific reports

Status: data only, 1 dataset cited

[8759] doi:10.1038/s41598-025-34492-4 [paper, data]

Elevated serotonin receptor 2A signaling restores learning and memory in a Fragile X syndrome model.

Journal: Scientific reports

Status: data only, 1 dataset cited

[8760] doi:10.1038/s41698-025-01260-6 [paper, repository]

A machine learning-defined cellular senescence signature systematically enhances prognostication and guides immunotherapy strategies for the treatment of gliomas.

Journal: NPJ precision oncology

Authors' code: Xutainbing/CSRGPS (no license)

Status: code verified, 14 files readable, 15 matches

[8761] doi:10.1038/s41746-025-02301-x [paper, repository]

Multimodal brain network topology and enhanced computer-aided diagnosis in Parkinson's Disease: a systematic review and meta-analysis.

Journal: NPJ digital medicine

Authors' code: chao9791/PD-brain-network-topological-properties-alterations (no license)

Status: code verified, 8 files readable, 4 matches

[8762] doi:10.1038/s42003-025-09353-5 [paper, repository]

Decoding gray matter, large-scale analysis of brain cell morphometry to inform microstructural modeling of diffusion MR signals.

Journal: Communications biology

Authors' code: Charlie-Aird/Decoding-Grey-Matter (no license)

Status: code verified, 20 files readable, 6 matches

[8763] doi:10.1038/s42003-025-09425-6 [paper, repository]

Temporal sleep spindle clustering and slow-oscillation coupling in motor memory consolidation and generalization.

Journal: Communications biology

Authors' code: arnaudboutin/Spindle-detection (no license), arnaudboutin/Spindle-clustering (no license), arnaudboutin/Spindle-SO-package (no license)

Status: code verified, 40 files readable, 9 matches

[8764] doi:10.1038/s44387-025-00053-3 [paper, repository]

Uncertainty-aware genomic deep learning with knowledge distillation.

Journal: NPJ artificial intelligence

Authors' code: zrcjessica/ensemble_distillation (MIT)

Status: code verified, 108 files readable, 15 matches

[8765] doi:10.1073/pnas.2530209123 [paper, data]

Combination antiviral and anti-inflammatory therapy mitigates persistent neurological deficits in mice post SARS-CoV-2 infection.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[8766] doi:10.1096/fba.2025-00082 [paper, data]

Impact of a GABA-Producing <i>Lactococcus lactis</i> on Microbiota and Mycobiota During CNS Inflammatory Demyelination.

Journal: FASEB bioAdvances

Status: data only, 3 datasets cited

[8767] doi:10.1126/sciadv.adv6891 [paper, repository]

Neural general circulation models for modeling precipitation.

Journal: Science advances

Authors' code: neuralgcm/neuralgcm (Apache-2.0), Zenodo 14715068 (Apache-2.0)

Status: code verified, 167 files readable, 10 matches

[8768] doi:10.1162/imag.a.1066 [paper, repository]

Parametrizing alternating current stimulation for neuromodulation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: m-bellvila/Parametrizing-alternating-current-stimulation-for-neuromodulation (no license)

Status: code verified, 5 files readable, 1 match

[8769] doi:10.1162/imag.a.1076 [paper, repository]

From maps to models: A survey on the reliability of small studies of task-based fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: psadil/maps-2-models (no license)

Status: code verified, 22 files readable, 3 matches

[8770] doi:10.1162/imag.a.1078 [paper, repository]

Higher spatial resolution diffusion-weighted imaging improves characterization of white matter disconnection in Alzheimer's disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: j-merenstein/high-res_DWI_AD (no license)

Status: code verified, 6 files readable, 10 matches

[8771] doi:10.1162/imag.a.1079 [paper, repository]

From fibers to cells: Fourier-based registration enables virtual Cresyl violet staining from 3D polarized light imaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: HelmholtzAI-Consultants-Munich/Quicksetup-ai (MIT), FZJ-INM1-BDA/celldetection (Apache-2.0), FZJ-INM1-BDA/pli2cells (Apache-2.0)

Status: code verified, 137 files readable, 3 matches

[8772] doi:10.1162/imag.a.1081 [paper]

MOTUM: A system for Motion Online Tracking Under MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[8773] doi:10.1162/imag.a.1083 [paper, repository]

Neural correlates of kinematic features of passive finger movement revealed by univariate and multivariate fMRI analyses.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: gustavopamplona/MVPA_passive_movement (no license)

Status: code verified, 13 files readable

[8774] doi:10.1186/s12935-025-04163-5 [paper, repository]

Leveraging the germ layer development patterns to predict prognosis and identify MEST as a novel therapeutic target in glioma.

Journal: Cancer cell international

Authors' code: zwxiangya/MEST_GBM (no license)

Status: code verified, 2 files readable, 8 matches

[8775] doi:10.1186/s12974-025-03682-2 [paper, data]

Selective vulnerability of the aging cholinergic system to amyloid pathology revealed by induced APP overexpression.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[8776] doi:10.1186/s40478-025-02195-6 [paper, data]

Alpha-synuclein seeding activity in postmortem tissues from patients with diffuse and isolated Lewy bodies.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[8777] doi:10.1364/boe.579532 [paper, repository]

Brain-SAM: a general automatic SAM-based segmentation model for brain science images.

Journal: Biomedical optics express

Authors' code: Brainsmatics/Brain-SAM (no license)

Status: code verified, 43 files readable, 3 matches

[8778] doi:10.1371/journal.pone.0338082 [paper, data]

Longer chronic cannabis use in humans is associated with impaired implicit motor learning and supranormal resting state cortical activity.

Journal: PloS one

Status: data only, 1 dataset cited

[8779] doi:10.1523/jneurosci.0879-25.2025 [paper]

Toward Unified Biomarkers for Focal Epilepsy.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: code on request

[8780] doi:10.26508/lsa.202503375 [paper, repository]

Selective autophagy fine-tunes Stat92E activity by degrading Su(var)2-10/PIAS in <i>Drosophila</i> glia.

Journal: Life science alliance

Authors' code: Zenodo 17752885 (CC-BY-4.0)

Status: code verified

[8781] doi:10.3389/fnagi.2025.1716076 [paper, repository]

The alterations in brain network functional gradients and dynamic functional connectivity in Alzheimer's disease: a resting-state fMRI study.

Journal: Frontiers in aging neuroscience

Authors' code: MICA-MNI/BrainSpace (BSD-3-Clause)

Status: code verified, 129 files readable, 4 matches

[8782] doi:10.3390/ph19010105 [paper, repository]

GLUT1-DS Brain Organoids Exhibit Increased Sensitivity to Metabolic and Pharmacological Induction of Epileptiform Activity.

Journal: Pharmaceuticals (Basel, Switzerland)

Authors' code: LengaCodes/Electrophy_Analysis_Tool_GP (MIT)

Status: code verified, 11 files readable, 8 matches

[8783] doi:10.3758/s13414-025-03179-3 [paper, data]

Does exposure within an experiment affect the influence of familiar parts versus wholes on figure assignment?

Journal: Attention, perception & psychophysics

Status: code on request, 1 dataset cited

[8784] doi:10.64898/2026.01.06.697971 [paper, data]

Good dog, bad wolf: Debunking evolutionary preparedness to fear wolves

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

Tuesday, 6 January 2026 (41 papers)

[8785] doi:10.1016/j.neo.2025.101271 [paper]

THOC1 complexes with SIN3A to regulate R-loops and promote glioblastoma progression.

Journal: Neoplasia (New York, N.Y.)

Status: code on request

[8786] doi:10.1016/j.ynirp.2025.100312 [paper, repository]

Associations between structural brain alterations and dysfunction across cognitive domains in cerebral small vessel disease: A systematic review and meta-analysis.

Journal: Neuroimage. Reports

Authors' code: neurodata/neuroparc (Apache-2.0)

Status: code verified, 8 files readable

[8787] doi:10.1038/s41398-025-03802-9 [paper, repository]

Functional heterogeneity in non-suicidal self-injury across psychiatric disorders: neural and psychosocial correlates.

Journal: Translational psychiatry

Authors' code: XiaoYangLab/NSSI_factor (no license)

Status: code verified, 4 files readable

[8788] doi:10.1038/s41421-025-00857-2 [paper, repository]

Prefrontal cortex-to-hypothalamic outputs orchestrate cue-potentiated palatable food consumption via AMPKβ2 signaling.

Journal: Cell discovery

Authors' code: zivlab/CellReg (GPL-2.0)

Status: code verified, 62 files readable

[8789] doi:10.1038/s41467-025-67723-3 [paper, repository]

Soft sonocapacitor with topologically integrated piezodielectric nanospheres enables wireless epidural closed-loop neuromodulation.

Journal: Nature communications

Authors' code: Zenodo 17696851 (CC-BY-4.0)

Status: code verified, 1 file readable

[8790] doi:10.1038/s41467-025-68044-1 [paper, repository]

NTAC: Neuronal type assignment from connectivity.

Journal: Nature communications

Authors' code: BenJourdan/ntac (MIT)

Status: code verified, 19 files readable, 3 matches

[8791] doi:10.1038/s41514-025-00315-z [paper, repository]

Stimulus-driven cerebrospinal fluid dynamics is impaired in glaucoma patients.

Journal: npj aging

Authors' code: OSF myuek (no license)

Status: code verified, 3 files readable, 1 match

[8792] doi:10.1038/s41537-025-00685-z [paper, repository]

Whole-brain functional connectivity predicts ultra-high risk for psychosis status and level of functioning.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: eminSerin/NBS-Predict (GPL-3.0)

Status: code verified, 170 files readable, 3 matches

[8793] doi:10.1038/s41589-025-02098-6 [paper]

Photo-cross-linking-assisted deorphanization deciphers GPR50-L-LEN pairing in metabolism.

Journal: Nature chemical biology

Status: code on request

[8794] doi:10.1038/s41597-025-06499-z [paper, repository]

The University of California San Diego Post-Treatment Glioblastoma (UCSD-PTGBM) annotated multimodal MRI Dataset.

Journal: Scientific data

Authors' code: rachitsaluja/UCSF-ALPTDG-benchmarks (no license)

Status: code verified, 2 files readable

[8795] doi:10.1038/s41598-025-27703-5 [paper, repository]

Robust neural decoding with low-density EEG.

Journal: Scientific reports

Authors' code: OSF xu2he (no license)

Status: code verified, 9 files readable, 1 match

[8796] doi:10.1038/s41598-025-32886-y [paper, repository]

Language assisted learnable hyperdimensional computing framework for retinal disease classification.

Journal: Scientific reports

Authors' code: taimurhassan/hdc_mlp (MIT)

Status: code verified, 12 files readable, 6 matches

[8797] doi:10.1038/s41598-025-34509-y [paper, repository]

Trait-like individual signatures dominate sleep EEG over insomnia-specific features.

Journal: Scientific reports

Authors' code: version.helsinki.fi/sleep-mind/eegsleepmind.git (no license)

Status: code verified

[8798] doi:10.1038/s41598-025-34609-9 [paper, data]

Default mode network activity is related to efficiency in a combined motion error and gambling task.

Journal: Scientific reports

Status: data only, 1 dataset cited

[8799] doi:10.1038/s41598-026-34997-6 [paper, repository]

Uncovering the role of integrated stress in Alzheimer's disease through single-cell and transcriptomic analysis.

Journal: Scientific reports

Authors' code: supp:PMC12873131/41598_2026_34997_MOESM5_ESM.r (no license)

Status: code verified, 1 file readable, 11 matches

[8800] doi:10.1038/s42003-025-09241-y [paper, repository]

Mapping functional homologies between human and marmoset brain networks using movie-driven ultra-high field fMRI.

Journal: Communications biology

Authors' code: Zenodo 12746414 (CC-BY-4.0)

Status: code verified, 14 files readable, 6 matches

[8801] doi:10.1038/s42003-025-09341-9 [paper, data]

The interplay of central insulin and menstrual cycle on functional brain networks and neural food cue reactivity in women.

Journal: Communications biology

Status: data only, 1 dataset cited

[8802] doi:10.1073/pnas.2508541123 [paper, data]

Immature <i>Caenorhabditis elegans</i> motor neurons control early embryo behavior via both synaptic and nonsynaptic GABA release.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[8803] doi:10.1080/10717544.2025.2608235 [paper, data]

Cell swelling and upright mounting-based imaging for high-resolution visualization of intracellular trafficking across the BBB using conventional confocal microscopy.

Journal: Drug delivery

Status: data only, 1 dataset cited

[8804] doi:10.1080/19490976.2025.2611546 [paper]

<i><b>Akkermansia muciniphila-</b></i><b>derived extracellular vesicles alleviate colitis-related cognitive impairment via tryptophan metabolic reprogramming of the gut‒brain axis</b>.

Journal: Gut microbes

Status: data only

[8805] doi:10.1093/narmme/ugag002 [paper, data]

A therapeutic antisense oligonucleotide encompassing 2'-<i>O</i>-methoxyethyl modification triggers unique perturbation of the transcriptome.

Journal: NAR molecular medicine

Status: data only, 1 dataset cited

[8806] doi:10.1117/1.nph.13.1.015002 [paper]

Diurnal differences in cerebral microvascular blood flow and oxygen delivery across brain regions in awake mice.

Journal: Neurophotonics

Status: code on request

[8807] doi:10.1162/imag.a.1082 [paper, repository]

Early neural encoding of pitch drives cue weighting during speech perception.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 7w9ty (no license)

Status: code verified, 14 files readable

[8808] doi:10.1162/imag.a.1084 [paper]

Cognitive sequences in obsessive-compulsive disorder are supported by frontal cortex ramping activity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[8809] doi:10.1177/13872877251401482 [paper, data]

Relationships between heritable dementia risk factors, cardiovascular risk factors in young adulthood, and midlife neuropsychological outcomes.

Journal: Journal of Alzheimer's disease : JAD

Status: data only, 1 dataset cited

[8810] doi:10.1186/s12888-025-07749-5 [paper, data]

Transcranial direct current stimulation and cognitive training in the treatment of cognitive deficit in schizophrenia: a randomized controlled trial.

Journal: BMC psychiatry

Status: data only, 2 datasets cited

[8811] doi:10.1186/s13024-025-00919-9 [paper]

Neuronal subtype governs amyloid structure, cellular response, and cognitive outcome in genetically targeted APP mouse models.

Journal: Molecular neurodegeneration

Status: data only

[8812] doi:10.1186/s13104-025-07599-0 [paper, data]

Refining a mouse model of progressive supranuclear palsy through inoculation of human post-mortem brain-derived tau.

Journal: BMC research notes

Status: data only, 1 dataset cited

[8813] doi:10.1242/dev.205011 [paper, repository]

Bidirectional interaction between protocadherin 8 and the transcription factor Dbx1 regulates cerebral cortex development.

Journal: Development (Cambridge, England)

Authors' code: fcauseret.github.io/septum (no license)

Status: code verified

[8814] doi:10.1371/journal.pcbi.1013866 [paper, repository]

Biologically-constrained spiking neural network for neuromodulation in locomotor recovery after spinal cord injury.

Journal: PLoS computational biology

Authors' code: rchia16/balancing-locomotor-networks (no license)

Status: code verified, 4 files readable, 2 matches

[8815] doi:10.1371/journal.pone.0338415 [paper, data]

Automated retinal disease classification using deep learning and AlexNet with statistical models analysis.

Journal: PloS one

Status: data only, 1 dataset cited

[8816] doi:10.1371/journal.pone.0339588 [paper, data]

The role of quantitative T1 and T2 mapping for detecting minimal hepatic encephalopathy in chronic hepatic schistosomiasis patients.

Journal: PloS one

Status: data only, 1 dataset cited

[8817] doi:10.3389/fneur.2025.1732729 [paper, data]

MALT1 in cerebrospinal fluid: a prognostic biomarker and potential therapeutic target in Alzheimer's disease.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[8818] doi:10.3389/frdem.2025.1725754 [paper, data]

Diffusion kurtosis imaging detects cortical microstructural alterations in amyloid-positive MCI patients.

Journal: Frontiers in dementia

Status: data only, 1 dataset cited

[8819] doi:10.3390/biomedicines14010117 [paper, repository]

Functional Neuroimaging as a Biomarker of Non-Invasive Brain Stimulation in Upper Limb Recovery After Stroke: A Systematic Review and Narrative Discussion.

Journal: Biomedicines

Authors' code: OSF nh6q3 (no license)

Status: empty repository

[8820] doi:10.3390/brainsci16010073 [paper, data]

Early Functional Recovery Trajectories After Severe Traumatic Brain Injury: A Secondary Analysis of the TBIMS National Database.

Journal: Brain sciences

Status: data only, 1 dataset cited

[8821] doi:10.3390/ijms27020592 [paper, repository]

Integrated Blood Biomarker and Neurobehavioural Signatures of Latent Neuroinjury in Experienced Military Breachers Exposed to Repetitive Low-Intensity Blast.

Journal: International journal of molecular sciences

Authors' code: dibatti5/dibattista_et_al_2025_latent_neuroinjury_in_military_breachers (no license)

Status: code verified, 5 files readable

[8822] doi:10.3758/s13428-025-02905-x [paper, repository]

Comparing aperiodic activity in consumer-grade and research-grade EEG: Reliability and association with mathematical ability.

Journal: Behavior research methods

Authors' code: OSF z52ux (no license)

Status: code verified, 18 files readable, 13 matches

[8823] doi:10.64898/2026.01.05.26343425 [paper, repository]

PANDORA: Population Archive of Neuroimaging Data Organized for Rapid Analysis

Journal: medRxiv (preprint)

Authors' code: git.fmrib.ox.ac.uk/pandora/pandora_proc (no license), git.fmrib.ox.ac.uk/fsl/melodic (no license)

Status: code verified

[8824] doi:10.7554/elife.103255 [paper, repository]

Dependence of contextual modulation in macaque V1 on interlaminar signal flow.

Journal: eLife

Authors' code: szhu-007/zhu_v1_interlaminar-signal-flow (GPL-3.0)

Status: code verified, 9 files readable, 1 match

[8825] doi:10.7554/elife.94835 [paper, repository]

Neural coding of multiple motion speeds in visual cortical area MT.

Journal: eLife

Authors' code: OSF dg5n9 (no license)

Status: empty repository

Monday, 5 January 2026 (31 papers)

[8826] doi:10.1016/j.nicl.2026.103943 [paper, repository]

Separating the forest from the palm trees: Individual variation in a presurgical language mapping task.

Journal: NeuroImage. Clinical

Authors' code: oiwi/twom (MIT)

Status: code verified, 6 files readable, 1 match

[8827] doi:10.1038/s41398-025-03801-w [paper]

Multimodal neuroimaging reveals brain neurochemical disturbances associated with superoxide dismutase in first-episode drug-naïve schizophrenia.

Journal: Translational psychiatry

Status: code on request

[8828] doi:10.1038/s41467-025-68218-x [paper, repository]

Neuronal feedback loop of the suprachiasmatic nucleus generates robust circadian rhythms.

Journal: Nature communications

Authors' code: MiedaLaboratory/Wang2026NatureCommunications (no license), Zenodo 17861530 (CC-BY-4.0)

Status: code verified, 4 files readable

[8829] doi:10.1038/s41597-025-06498-0 [paper, data]

The ASPIRE Research Institute Dataset: Building a Foundation for Brain Health Research in the United Arab Emirates.

Journal: Scientific data

Status: data only, 1 dataset cited

[8830] doi:10.1038/s41598-025-33610-6 [paper, data]

Development of a multimodal magnetic resonance imaging-based machine learning prediction model for flight cadets.

Journal: Scientific reports

Status: data only, 1 dataset cited

[8831] doi:10.1038/s41598-025-34117-w [paper, repository]

The impact of awareness on affective emoji priming in visual word recognition.

Journal: Scientific reports

Authors' code: OSF rxzdn (no license)

Status: code verified, 1 file readable, 5 matches

[8832] doi:10.1038/s41746-025-02305-7 [paper, data]

A machine learning-enabled blood transcriptomic signature for digital diagnosis and subtyping of Alzheimer's disease.

Journal: NPJ digital medicine

Status: code on request, 1 dataset cited

[8833] doi:10.1038/s42003-025-09412-x [paper, data]

Vigilance state dissociation induced by 5-MeO-DMT in mice.

Journal: Communications biology

Status: code on request, 1 dataset cited

[8834] doi:10.1039/d5ra08546b [paper, data]

Magnetic dipole imaging of magnetite nanoparticles in brain tissue.

Journal: RSC advances

Status: data only, 1 dataset cited

[8835] doi:10.1073/pnas.2426232122 [paper, repository]

Primate gut microbiota induce evolutionarily salient changes in mouse neurodevelopment.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ardecasien/mouse-gut-brain (no license), Mallott-Lab/PrimateMicrobiomeandBrainGrowth (MIT)

Status: code verified, 19 files readable, 20 matches

[8836] doi:10.1073/pnas.2500436123 [paper, repository]

Prior novelty invigorates future mesolimbic target detection.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: blelliott23 (no license), blelliott23/Synergistic-Neural-Circuits-for-Novelty-and-Goal-Directed-Behavior (no license)

Status: code verified, 1 file readable, 6 matches

[8837] doi:10.1073/pnas.2513598123 [paper, data]

Income insufficiency impacts early brain development in infants facing increased psychosocial adversity: A network-based approach.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[8838] doi:10.1080/07853890.2025.2610900 [paper, data]

Long-term outcomes after treatment for symptomatic hemorrhage of brain arteriovenous malformations.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[8839] doi:10.1101/gad.352924.125 [paper, repository]

DIO3 coordinates photoreceptor development timing and fate stability in human retinal organoids.

Journal: Genes & development

Authors' code: csanti88/dio3_christina (no license)

Status: code verified, 2 files readable, 7 matches

[8840] doi:10.1162/imag.a.1067 [paper, repository]

TissUnet: Improved extracranial tissue and cranium segmentation for children through adulthood.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: AIM-KannLab/TissUNet (no license)

Status: code verified, 23 files readable

[8841] doi:10.1162/imag.a.1068 [paper, repository]

Variable E-field properties of dual-site tACS with phase lags.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: gitlab.utwente.nl/bss_development/neuro/acs/efieldpropertiesdualtacs (CC-BY-4.0)

Status: code verified, 32 files readable, 4 matches

[8842] doi:10.1162/imag.a.1075 [paper]

Detecting patterns of atrophy in cognitively impaired individuals using portable, low-field MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[8843] doi:10.1186/s12984-025-01864-w [paper, repository]

Exploring gait automaticity and prefrontal brain activity during single and dual-task walking in aging and Parkinson's disease.

Journal: Journal of neuroengineering and rehabilitation

Authors' code: alkvi.github.io/fnirs_stroop_study (no license), alkvi/fnirs_dataset_preparation (no license), alkvi/fnirs_validation_study (no license)

Status: code verified, 30 files readable, 4 matches

[8844] doi:10.1186/s13024-025-00921-1 [paper, data]

OMG! A proteomic determinant of neurodegenerative resiliency.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[8845] doi:10.1186/s40001-025-03750-6 [paper, repository]

Single-cell profiling defines the cellular landscape of the urinary bladder: a scoping review.

Journal: European journal of medical research

Authors' code: OSF gju6k (no license)

Status: empty repository

[8846] doi:10.1242/jeb.251673 [paper, data]

Age-related differences in learning, memory and brain plasticity in workers of the common wasp, Vespula vulgaris.

Journal: The Journal of experimental biology

Status: data only, 1 dataset cited

[8847] doi:10.1371/journal.pcbi.1013762 [paper, repository]

Linking brain and behavior states in Zebrafish Larvae locomotion using hidden Markov models.

Journal: PLoS computational biology

Authors' code: ZebrafishHMM2023/ZebrafishHMM2023_CodeAndData (GPL-3.0), ZebrafishHMM2023/ZebrafishHMM2023.jl (MIT), EmeEmu/IBIO-Banyuls2023-Python (GPL-3.0), gin.g-node.org/debregeas/zf_artr_thermo (CC0-1.0)

Status: code verified, 122 files readable, 2 matches

[8848] doi:10.1371/journal.pone.0330362 [paper, data]

Evaluating the role of graft angle on cerebral hemodynamics following direct cerebral bypass for moyamoya disease.

Journal: PloS one

Status: data only, 1 dataset cited

[8849] doi:10.1371/journal.pone.0339326 [paper, repository]

Integrating simulated and experimental data to identify mitochondrial bioenergetic defects in Parkinson's Disease models.

Journal: PloS one

Authors' code: sandeepred/mitoexperiments_interpret (no license)

Status: code verified, 21 files readable, 9 matches

[8850] doi:10.1523/eneuro.0164-25.2025 [paper, repository]

Comparing Metacognitive Representations of Bodily and External Agency.

Journal: eNeuro

Authors' code: OSF sjurk (no license), OSF sm7rg (no license)

Status: code verified

[8851] doi:10.3389/fimmu.2025.1689773 [paper, data]

Traumatic brain injury and post-injury sleep fragmentation differentially alter the microglial transcriptome.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[8852] doi:10.3389/fonc.2025.1710073 [paper, data]

Downregulation of <i>OPCML</i> is associated with activation of AKT signaling and aggressive phenotypes in glioblastoma cells.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[8853] doi:10.3389/frai.2025.1665874 [paper, repository]

A Turing Test for artificial nets devoted to vision.

Journal: Frontiers in artificial intelligence

Authors' code: isp.uv.es/code/vision_and_color (no license)

Status: code found, still to be checked

[8854] doi:10.3390/ijms27010549 [paper, repository]

Phylostratigraphic Analysis Reveals the Evolutionary Origins and Potential Role of New Genes in the Adaptive Evolution of <i>Spodoptera frugiperda</i>.

Journal: International journal of molecular sciences

Authors' code: thelovelab/DESeq2 (no license)

Status: code verified, 52 files readable, 1 match

[8855] doi:10.7554/elife.93994 [paper, repository]

Population analyses reveal heterogenous encoding in the medial prefrontal cortex during naturalistic foraging.

Journal: eLife

Authors' code: knowblesse/Lobster (MIT)

Status: code verified, 81 files readable, 4 matches

[8856] doi:10.7717/peerj.20416 [paper, repository]

Evaluating portable EEG: a comparison between two wireless systems (EPOC Flex and LiveAmp) and the wired BrainAmp system.

Journal: PeerJ

Authors' code: Zenodo 15698441 (CC-BY-4.0)

Status: code verified

Sunday, 4 January 2026 (6 papers)

[8857] doi:10.1002/advs.202512752 [paper, repository]

Diffusion-MRI-Based Estimation of Cortical Architecture via Machine Learning (DECAM) in Primate Brains.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: haohuanglab/DECAM (MIT)

Status: code verified, 12 files readable, 3 matches

[8858] doi:10.1002/advs.202513556 [paper, repository]

Learned Conformational Space and Pharmacophore Into Molecular Foundational Model.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Wang-Lin-boop/Ouroboros (MIT)

Status: code verified, 22 files readable, 21 matches

[8859] doi:10.1002/advs.202515546 [paper, data]

EGR Proteins Mediate Interferon-Independent Anti-HSV-1 Responses Through Viral and Host Targets.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[8860] doi:10.1002/mrm.70237 [paper, repository]

Pole-To-Pole 3D Radial Trajectory Designs Improve Image Quality and Quantitative Parametric Mapping in the Brain and Heart.

Journal: Magnetic resonance in medicine

Authors' code: QIS-MRI/3D_radial_phyllotaxis_pole-to-pole (no license)

Status: code verified, 40 files readable, 10 matches

[8861] doi:10.1186/s12964-025-02413-7 [paper, data]

Cortical cell culture model for examining cancer extracellular vesicle dynamics and neuroinflammatory response.

Journal: Cell communication and signaling : CCS

Status: data only, 1 dataset cited

[8862] doi:10.3390/ijms27010513 [paper, repository]

Rethinking DeepVariant: Efficient Neural Architectures for Intelligent Variant Calling.

Journal: International journal of molecular sciences

Authors' code: ispras/deepvariant_alternative_models (no license)

Status: code verified, 8 files readable, 5 matches

Saturday, 3 January 2026 (18 papers)

[8863] doi:10.1007/s00018-025-06028-6 [paper]

B cell-specific METTL3 depletion exacerbates experimental autoimmune encephalomyelitis.

Journal: Cellular and molecular life sciences : CMLS

Status: data only

[8864] doi:10.1007/s00018-025-06048-2 [paper, data]

Hsa_circ_PCNT sponges hsa-miR-133b to promote SHH medulloblastoma via TAGLN2.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[8865] doi:10.1007/s00234-025-03875-9 [paper, repository]

Evaluating the T1w/FLAIR ratio as a proxy for myelin: Associations with myelin water Imaging, diffusion metrics, and cognition.

Journal: Neuroradiology

Authors' code: treanus/KUL_NIS (MPL-2.0)

Status: code verified, 59 files readable, 2 matches

[8866] doi:10.1038/s41467-025-67945-5 [paper, repository]

Distinct antidepressant therapies act on a common brain network.

Journal: Nature communications

Authors' code: rmarkello/abagen (BSD-3-Clause), jigongjun/Neuroimaging-and-Neuromodulation (no license), Zenodo 14252802 (CC-BY-4.0)

Status: code verified, 369 files readable, 3 matches

[8867] doi:10.1038/s41467-025-68047-y [paper, repository]

A chromosome region linked to neurodevelopmental disorders influences locomotor behavior through sex-specific neural circuits.

Journal: Nature communications

Authors' code: neurord/ephys_anal (GPL-3.0), Zenodo 17601371 (CC-BY-4.0), Zenodo 17584161 (GPL-3.0), yannvrb/snrna-seq-16p11.2-del-males-females (no license)

Status: code verified, 98 files readable, 10 matches

[8868] doi:10.1038/s41597-025-06512-5 [paper, data]

An EEG Dataset for Visual Imagery-Based Brain-Computer Interface.

Journal: Scientific data

Status: data only, 2 datasets cited

[8869] doi:10.1038/s41597-025-06534-z [paper, data]

Comprehensive spatiotemporal dataset of shared bicycle operations in Xiamen China.

Journal: Scientific data

Status: data only, 1 dataset cited

[8870] doi:10.1038/s41598-025-34304-9 [paper, data]

Alchemilla vulgaris cytoprotection against methyl methanesulfonate by experimental and molecular docking approaches.

Journal: Scientific reports

Status: data only, 1 dataset cited

[8871] doi:10.1038/s42003-025-09482-x [paper, repository]

Brain-aligning of semantic vectors improves neural decoding of visual stimuli.

Journal: Communications biology

Authors' code: KamitaniLab/GenericObjectDecoding (MIT), yanagisawa-lab (no license)

Status: code verified, 91 files readable, 2 matches

[8872] doi:10.1038/s43856-025-01330-7 [paper, repository]

Carriers of LRRK2 pathogenic variants show a milder, anatomically distinct brain signature of Parkinson's disease.

Journal: Communications medicine

Authors' code: jakubkopal/LRRK2-MRI (MIT)

Status: code verified, 5 files readable, 3 matches

[8873] doi:10.1038/s44319-025-00667-3 [paper, data]

TRIM2 E3 ligase substrate discovery reveals zinc-mediated regulation of TMEM106B in the endolysosomal pathway.

Journal: EMBO reports

Status: data only, 5 datasets cited

[8874] doi:10.1093/braincomms/fcaf503 [paper, repository]

Attenuated heartbeat-evoked potentials in functional neurological disorder.

Journal: Brain communications

Authors' code: DePrettoM/EEGpal (BSD-2-Clause)

Status: code verified, 2,000 files readable, 1 match

[8875] doi:10.1186/s12880-025-02141-x [paper, data]

Hybrid 2D/3D CNN and radiomics model for brain tumor classification using EfficientNetb0 and ResNet-18.

Journal: BMC medical imaging

Status: code on request, 3 datasets cited

[8876] doi:10.1186/s12888-025-07750-y [paper, data]

Comparison of clinical features and cerebral glucose metabolism between patients with major depressive disorder and Parkinson's with depression.

Journal: BMC psychiatry

Status: data only, 2 datasets cited

[8877] doi:10.1186/s12967-025-07597-7 [paper]

Transcranial direct current stimulation exerts neuroprotective effects in Parkinson's disease by restoring Mlst8-mediated autophagic homeostasis.

Journal: Journal of translational medicine

Status: code on request

[8878] doi:10.1186/s40478-025-02192-9 [paper, repository]

Calcineurin depletion coincides with phosphorylated TDP-43 deposition in a mouse model of ALS/FTLD-TDP.

Journal: Acta neuropathologica communications

Authors' code: bbi-lab/bbi-dmux (other)

Status: code verified, 30 files readable, 1 match

[8879] doi:10.3390/brainsci16010072 [paper, data]

A GABAergic Projection from the Zona Incerta to the Rostral Ventromedial Medulla Modulates Descending Control of Neuropathic Pain.

Journal: Brain sciences

Status: data only, 1 dataset cited

[8880] doi:10.3390/cells15010079 [paper, data]

Virtual Screening-Guided Discovery of a Selective TRPV1 Pentapeptide Inhibitor with Topical Anti-Allergic Efficacy.

Journal: Cells

Status: data only, 2 datasets cited

Friday, 2 January 2026 (38 papers)

[8881] doi:10.1001/jamanetworkopen.2025.52787 [paper, repository]

Effect Modifiers of Graded Sensorimotor Retraining for Chronic Low Back Pain: A Secondary Analysis of the RESOLVE Randomized Trial.

Journal: JAMA network open

Authors' code: OSF 8whmj (no license)

Status: empty repository

[8882] doi:10.1002/jmri.70229 [paper]

Enhancing Study Design and Analysis of MR Imaging Markers Through Measurement Error Modeling.

Journal: Journal of magnetic resonance imaging : JMRI

Status: code on request

[8883] doi:10.1007/s11357-025-02075-w [paper, data]

Structural and mitochondrial dendritic degenerations in old hypoglossal motor neurons.

Journal: GeroScience

Status: data only, 1 dataset cited

[8884] doi:10.1007/s12015-025-11028-x [paper, data]

The Zinc-Finger Protein POGZ Associates with Polycomb Repressive Complex 1 to Regulate Bone Morphogenetic Protein Signaling During Neuronal Differentiation.

Journal: Stem cell reviews and reports

Status: data only, 1 dataset cited

[8885] doi:10.1016/j.celrep.2025.116720 [paper, repository]

Rapid plasticity of default-mode local network architectures following adult-onset blindness.

Journal: Cell reports

Authors' code: KQDing/network_analysis_calcium_imaging (no license)

Status: code verified, 13 files readable, 5 matches

[8886] doi:10.1016/j.csbj.2025.12.035 [paper, data]

Systematic discovery of disease-modifying targets by prediction from knowledge graph-based AI model and experimental validation: Parkinson's disease case.

Journal: Computational and structural biotechnology journal

Status: data only, 1 dataset cited

[8887] doi:10.1016/j.ebiom.2025.106094 [paper, repository]

Prediction of brain age using structural magnetic resonance imaging: a comparison of clinical utility of publicly available software packages.

Journal: EBioMedicine

Authors' code: RDoerfel/bap1b-public (MIT)

Status: code verified, 32 files readable, 3 matches

[8888] doi:10.1016/j.isci.2025.114568 [paper, repository]

The neural basis of habit formation measured in goal-directed response switching.

Journal: iScience

Authors' code: OSF w86nt (no license)

Status: code verified, 5 files readable, 3 matches

[8889] doi:10.1016/j.isci.2025.114596 [paper, repository]

Aberrant CDK4/6-driven cell-cycle reentry drives neuronal loss and defines a therapeutic target in C9orf72 ALS/FTD.

Journal: iScience

Authors' code: Zenodo 15593963 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[8890] doi:10.1016/j.stemcr.2025.102752 [paper]

Atypical cell cycle regulation over neural stem cell expansion.

Journal: Stem cell reports

Status: code on request

[8891] doi:10.1016/j.stemcr.2025.102754 [paper, repository]

Aβ plaques induce local pre-synaptic toxicity in human iPSC-derived neuron xenografts.

Journal: Stem cell reports

Authors' code: vib-bic-projects/202409_synapse_neurite_quantificator (MIT)

Status: code verified, 3 files readable

[8892] doi:10.1021/acschembio.5c00686 [paper, data]

Multiomic Analysis Reveals Molecular Pathways Associated with Intestinal Aggregation of α-Synuclein.

Journal: ACS chemical biology

Status: data only, 1 dataset cited

[8893] doi:10.1021/cbmi.5c00213 [paper]

Quantitative Assessment of Brain Glucose Metabolism Using Dynamic Glucose-Enhanced Magnetic Resonance Fingerprinting (DGE-MRF).

Journal: Chemical & biomedical imaging

Status: code on request

[8894] doi:10.1038/s41562-025-02379-z [paper, repository]

Spatial contexts with reliable neural representations support reinstatement of subsequently placed objects.

Journal: Nature human behaviour

Authors' code: rmasiso/MemoryPalaceReliability (no license)

Status: code verified, 51 files readable, 17 matches

[8895] doi:10.1038/s41598-025-33646-8 [paper, repository]

Trait psychoticism is associated with greater intersubject neural dissimilarity during naturalistic social movie viewing.

Journal: Scientific reports

Authors' code: OSF a49ct (no license)

Status: empty repository

[8896] doi:10.1038/s41598-025-33803-z [paper, repository]

Deep vision-based framework for coastal flood prediction under sea level rise and shoreline protection.

Journal: Scientific reports

Authors' code: Arnukk/CASPIAN (MIT)

Status: code verified, 14 files readable, 11 matches

[8897] doi:10.1038/s41598-025-34211-z [paper, data]

A multi-task EEG emotion recognition method based on emotion-dimension coupling constraints.

Journal: Scientific reports

Status: data only, 1 dataset cited

[8898] doi:10.1038/s41598-025-34257-z [paper, repository]

Language biomarker screening using AI: a transdiagnostic approach to the brain.

Journal: Scientific reports

Authors' code: themistocleous/neuroscreen (no license)

Status: code verified, 14 files readable, 29 matches

[8899] doi:10.1073/pnas.2511401122 [paper, data]

Peripheral nerve injury reduces macrophage efferocytosis to facilitate neuropathic pain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[8900] doi:10.1073/pnas.2513172122 [paper, repository]

Mechanical compression induces neuronal apoptosis, reduces synaptic activity, and promotes glial neuroinflammation in mice and humans.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: plezar/Neuron-Compression-PNAS (MIT)

Status: code verified, 32 files readable, 19 matches

[8901] doi:10.1073/pnas.2516365123 [paper, repository]

Saccade-related LFP power transients in the primate amygdala and hippocampus linked to the perception of social status.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 29206241 (CC-BY-4.0)

Status: code verified, 10 files readable

[8902] doi:10.1073/pnas.2525795122 [paper, repository]

Cerebellar Purkinje cell firing reduction contributes to aging-related declining motor coordination in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: EviatarFields/FIelds-et-al-PNAS (no license)

Status: empty repository

[8903] doi:10.1073/pnas.2528095123 [paper, data]

Dietary folic acid prevents peripheral neuropathy in mouse models of neural tube defects and type 2 diabetes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[8904] doi:10.1080/14756366.2025.2598741 [paper, repository]

From bench to brain: novel thieno-oxazine hybrids as potent pleiotropic anti-Alzheimer's agents with <i>in vivo</i>/<i>in vitro</i> validation and <i>in silico</i> insights.

Journal: Journal of enzyme inhibition and medicinal chemistry

Authors' code: mathworks.com/downloads (no license)

Status: code found, still to be checked

[8905] doi:10.1093/braincomms/fcaf510 [paper, repository]

Plasmaphosphorylated tau as biomarkers for multiple sclerosis diagnosis, subtyping, and prognosis.

Journal: Brain communications

Authors' code: xialab2016/tau_biomarker (no license)

Status: code verified, 4 files readable, 3 matches

[8906] doi:10.1093/nsr/nwaf595 [paper, repository]

Evolutionary convergence and divergence of hippocampal cytoarchitecture between rodents and primates revealed by single-cell spatial transcriptomics.

Journal: National science review

Authors' code: tyfei0216/HIP (no license)

Status: code verified, 18 files readable, 3 matches

[8907] doi:10.1117/1.jbo.31.1.016004 [paper, repository]

Longitudinal three-photon imaging for tracking amyloid plaques and vascular degeneration in a mouse model of Alzheimer's disease.

Journal: Journal of biomedical optics

Authors' code: estassss/Longitudinal-three-photon-imaging (no license)

Status: code verified, 15 files readable, 6 matches

[8908] doi:10.1126/sciadv.ady5905 [paper, repository]

DMTF1 up-regulation rescues proliferation defect of telomere dysfunctional neural stem cells via the SWI/SNF-E2F axis.

Journal: Science advances

Authors' code: BenLangmead/bowtie2 (GPL-3.0)

Status: code verified, 180 files readable

[8909] doi:10.1186/s12967-025-07618-5 [paper, data]

Hypoxia-induced PRMT6 expression promotes temozolomide chemoresistance in glioblastoma via G3BP1.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[8910] doi:10.1186/s12974-025-03611-3 [paper, data]

Cognitive dysfunction in type 1 diabetes: role of TREM2 in microglial activation and Aβ pathology.

Journal: Journal of neuroinflammation

Status: data only, 3 datasets cited

[8911] doi:10.1186/s12984-025-01865-9 [paper, data]

Personalized high-intensity temporal interference stimulation decouples cerebellar networks to enhance implicit learning.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

[8912] doi:10.1212/nxg.0000000000200343 [paper, repository]

Immune Cell Mitochondrial Phenotypes Are Largely Preserved in Mitochondrial Diseases and Do Not Reflect Disease Severity.

Journal: Neurology. Genetics

Authors' code: mitopsychobio/2024_Immune_MRC_Liu (no license)

Status: code verified, 38 files readable, 1 match

[8913] doi:10.1371/journal.pone.0315068 [paper, data]

Reinstating motivational states: Electrical signatures of craving and neural mind reading.

Journal: PloS one

Status: data only, 1 dataset cited

[8914] doi:10.1371/journal.pone.0339879 [paper, data]

Prognostic value of red blood cell distribution width in traumatic brain injury: A mediation and deep learning analysis.

Journal: PloS one

Status: data only, 1 dataset cited

[8915] doi:10.3389/fimmu.2025.1697171 [paper, data]

Immune imbalance in the human hippocampus in PTSD revealed by single-nucleus transcriptomics.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[8916] doi:10.3389/fnins.2025.1691929 [paper, repository]

Transfer learning for subject-independent motor imagery EEG classification using convolutional relational networks.

Journal: Frontiers in neuroscience

Authors' code: abzzall/ConvoReleNet (CC-BY-4.0)

Status: code verified, 3 files readable, 3 matches

[8917] doi:10.3389/fonc.2025.1694116 [paper]

ASPHD1 Is a tumor-suppressive and prognostic marker in glioma.

Journal: Frontiers in oncology

Status: data only

[8918] doi:10.7554/elife.103788 [paper, repository]

Differential destinations, dynamics, and functions of high- and low-order features in the feedback signal during object processing.

Journal: eLife

Authors' code: figshare 25991362 (CC-BY-4.0)

Status: code verified, 372 files readable, 12 matches

Thursday, 1 January 2026 (292 papers, 42 on this page)

[8919] doi:10.1002/alz.71124 [paper, repository]

Automated item-level measures of verbal fluency in semantic and logopenic primary progressive aphasia.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: jmjvonk (no license)

Status: code verified

[8920] doi:10.1002/alz.71126 [paper, data]

Neuroimaging markers and cognition in cognitively unimpaired older Latinos from the Harvard Aging Brain Study.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[8921] doi:10.1002/brb3.71148 [paper, repository]

Genetic Association Between Polymyositis/Dermatomyositis and Epilepsy: Insights From Mendelian Randomization and Bioinformatic Analyses.

Journal: Brain and behavior

Authors' code: dreamyuyu/PM-Epilepsy-figure (no license)

Status: code verified, 7 files readable, 5 matches

[8922] doi:10.1002/brb3.71167 [paper]

Global Research Trends and Hotspots in Cerebral Small Vessel Disease-Related Cognitive Impairment: A Bibliometric Analysis (2001-2024).

Journal: Brain and behavior

Status: code on request

[8923] doi:10.1002/brb3.71172 [paper]

The Role of Sphingolipid Metabolism and Neuron Death in Ischemic Stroke: A New Perspective from Bioinformatics.

Journal: Brain and behavior

Status: data only

[8924] doi:10.1002/brb3.71176 [paper, repository]

Cortically Dependent Motor Training Does Not Induce Abnormal Movements in DYT1-Knock In Mice.

Journal: Brain and behavior

Authors' code: Zenodo 17290184 (CC-BY-4.0), athodge/dyt1mouse_behavioralphenotype (no license)

Status: code verified, 1 file readable

[8925] doi:10.1002/brb3.71197 [paper, repository]

A Meta-Analysis of the Effects of Chronic Stress on the Prefrontal Transcriptome in Animal Models and Convergence With Existing Human Data.

Journal: Brain and behavior

Authors' code: Jinglin0320/Metaanalysis_GemmaOutput_CSDS_PFC_Jinglin (no license)

Status: code verified, 9 files readable, 14 matches

[8926] doi:10.1002/brb3.71202 [paper, data]

Subcortical Brain-Age Gaps Reveal Asymmetric Aging Patterns in Parkinson's Disease With Cognitive Impairment.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[8927] doi:10.1002/brb3.71215 [paper, data]

Targeting the Spinal Cord-Brain Axis: Electroacupuncture Mitigates Remote Frontal Cortex Neuroinflammation via HMGB1/TLR4 to Aid Functional Recovery After Spinal Cord Injury.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[8928] doi:10.1002/cns.70678 [paper, repository]

Altered Functional Specialization and Interhemispheric Coordination in Rhegmatogenous Retinal Detachment: Associations With Gene Expression, Neurotransmitter Receptor Distribution, and SVM-SHAP Classification

Journal: CNS neuroscience & therapeutics

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 2 matches

[8929] doi:10.1002/cns.70735 [paper, data]

Four Distinct Dynamic Intracranial Pressure Trajectories and Their Prognostic Implications in Acute Brain Injury: A Multicenter Cohort Study.

Journal: CNS neuroscience & therapeutics

Status: data only, 2 datasets cited

[8930] doi:10.1002/cns.70741 [paper]

Coagulation Pathways as Determinants of Acute Subdural Hematoma Resolution: Genetic Evidence From Human Data.

Journal: CNS neuroscience & therapeutics

Status: code on request

[8931] doi:10.1002/cpz1.70279 [paper, repository]

Optimized Laboratory Maintenance and Functional Testing of Chara braunii.

Journal: Current protocols

Authors' code: vosolsob/illumination (no license)

Status: code verified, 2 files readable

[8932] doi:10.1002/cpz1.70286 [paper, repository]

A Protocol for Microprism-Based Two-Photon Imaging Of The Lateral Cortex In The Mouse Inferior Colliculus.

Journal: Current protocols

Authors' code: Zenodo 14946966 (MIT)

Status: code verified, 47 files readable, 1 match

[8933] doi:10.1002/dad2.70281 [paper]

Digital cognition plus plasma p-Tau217 and Aβ42/40 powerfully predict Alzheimer's progression.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Status: code on request

[8934] doi:10.1002/dev.70092 [paper]

Interpersonal Contributors to Depression in Sexual Minority Adolescents: An Examination of Exposure to Acute Stressors and Neural Reactivity to Interpersonal Emotional Images.

Journal: Developmental psychobiology

Status: code on request

[8935] doi:10.1002/dev.70114 [paper, data]

The Developmental Approach to Autism Science: Considering Cognitive Ability in the Age of Neuroimaging Research.

Journal: Developmental psychobiology

Status: data only, 1 dataset cited

[8936] doi:10.1002/dneu.70000 [paper, data]

Adolescent White Matter Maturation Mediates Epigenetic Associations With Cognitive Development.

Journal: Developmental neurobiology

Status: data only, 1 dataset cited

[8937] doi:10.1002/dneu.70007 [paper, repository]

Parallel Morphological and Functional Development in the Xenopus Retinotectal System.

Journal: Developmental neurobiology

Authors' code: figshare 267521 (CC-BY-4.0), RuthazerLab/XenMorphFunc (no license)

Status: code verified, 7 files readable, 4 matches

[8938] doi:10.1002/glia.70098 [paper]

Astrocytic Chromatin Remodeler ATRX Gates Hippocampal Memory Consolidation Through Metabolic and Synaptic Regulation.

Journal: Glia

Status: data only

[8939] doi:10.1002/glia.70099 [paper, data]

Astrocytic Igfbp2 Promotes Spontaneous Seizures in a Mouse Model of Mesial Temporal Lobe Epilepsy.

Journal: Glia

Status: code on request, 1 dataset cited

[8940] doi:10.1002/hbm.70433 [paper, repository]

Neural Dynamics of Social Cognition: A Single-Trial Computational Analysis of Learning Under Uncertainty.

Journal: Human brain mapping

Authors' code: translationalneuromodeling/tapas (GPL-3.0), colleenc11/COMPI_IOIO (no license)

Status: code verified, 1,650 files readable, 12 matches

[8941] doi:10.1002/hbm.70450 [paper, repository]

Sex Classification Based on the Functional Connectivity Patterns of the Language Network: A Resting State fMRI Study.

Journal: Human brain mapping

Authors' code: Xanthylajoie/sex-classification-language-fc (no license)

Status: code verified, 7 files readable, 4 matches

[8942] doi:10.1002/hipo.70058 [paper, repository]

Hippocampal-Prelimbic Coupling During Context-Dependent Extinction Retrieval in Rats.

Journal: Hippocampus

Authors' code: marenlab (no license), marenlab/HPC-PL-Coupling-in-Context-Extinction-Retrieval (no license)

Status: code verified, 20 files readable, 7 matches

[8943] doi:10.1002/jnr.70113 [paper, data]

The Functional Epididymal Amyloid Cystatin-Related Epididymal Spermatogenic (CRES) is a Component of the Mammalian Brain Extracellular Matrix.

Journal: Journal of neuroscience research

Status: data only, 1 dataset cited

[8944] doi:10.1002/mabi.202500394 [paper]

High-Throughput 3D Glioblastoma Model in Glycosaminoglycan Hydrogels for Personalized Therapeutic Screening.

Journal: Macromolecular bioscience

Status: data only

[8945] doi:10.1002/mgg3.70198 [paper, data]

Clinical and Genetic Analysis of SMARCC2-Related Diseases in Three Chinese Patients.

Journal: Molecular genetics & genomic medicine

Status: data only, 1 dataset cited

[8946] doi:10.1002/mp.70217 [paper, repository]

Dual energy CT and deep learning for an automated volumetric segmentation of the major intracranial tissues: Feasibility and initial findings.

Journal: Medical physics

Authors' code: fwinzell/brainCT (MIT)

Status: code verified, 39 files readable, 1 match

[8947] doi:10.1002/mp.70259 [paper, repository]

A deep-learning model for one-shot transcranial ultrasound simulation and phase aberration correction.

Journal: Medical physics

Authors' code: kbp-lab/TUSNet (MIT)

Status: code verified, 18 files readable, 16 matches

[8948] doi:10.1002/nbm.70171 [paper, repository]

In Vivo Glx Measurements From GABA-Edited HERMES at 3 T Are Not Consistent With Those From Short-TE PRESS Across Scanners, Brain Regions, Diagnostic and Age Groups.

Journal: NMR in biomedicine

Authors' code: schorschinho/osprey (MIT)

Status: code verified, 487 files readable, 7 matches

[8949] doi:10.1002/nbm.70187 [paper, repository]

Longitudinal MRI Characterization of T<sub>1</sub> and T<sub>2</sub> Relaxation Times in an Amyloid Mouse Model of Alzheimer's Disease at 11.7 T.

Journal: NMR in biomedicine

Authors' code: zyliamwei/Simulation_T1T2 (GPL-3.0)

Status: code verified, 7 files readable, 1 match

[8950] doi:10.1002/trc2.70202 [paper, repository]

Lower CD8+ T-cell senescence partially mediates the neuroprotection of higher aerobic fitness.

Journal: Alzheimer's & dementia (New York, N. Y.)

Authors' code: OSF 453un (no license)

Status: code verified, 1 file readable, 2 matches

[8951] doi:10.1016/j.crmeth.2025.101265 [paper]

Investigation of synaptic connectivity in functional in vitro neuronal assemblies.

Journal: Cell reports methods

Status: code on request

[8952] doi:10.1016/j.ijchp.2026.100677 [paper]

Aberrant multi-brain neurodynamics drive atypical social cooperation and competition in heroin use disorder: An fNIRS-based hyperscanning study.

Journal: International journal of clinical and health psychology : IJCHP

Status: code on request

[8953] doi:10.1016/j.neurot.2026.e00836 [paper, repository]

Network-based prediction and real-world patient data observation identify doxycycline as a repurposable drug in Alzheimer's disease.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Authors' code: ChengF-lab/TBI-AD (no license), IBM/causallib (Apache-2.0)

Status: code verified, 149 files readable, 4 matches

[8954] doi:10.1016/j.neurot.2026.e00862 [paper, data]

Down-regulation of lipocalin-2 alleviates depressive-like behaviors in mice through modulation of microglial activation.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[8955] doi:10.1016/j.tjpad.2025.100452 [paper, repository]

Multi-omics integration reveals shared genetic architecture between metabolic markers and gray matter atrophy in Alzheimer's Disease.

Journal: The journal of prevention of Alzheimer's disease

Authors' code: murraylab/brainsmash (GPL-3.0)

Status: code verified, 20 files readable, 2 matches

[8956] doi:10.1016/j.tjpad.2025.100463 [paper, data]

Longitudinal changes in subcortical functional connectivity during Alzheimer's disease progression.

Journal: The journal of prevention of Alzheimer's disease

Status: data only, 1 dataset cited

[8957] doi:10.1016/j.ynpai.2026.100208 [paper, data]

Context dependent roles of FGF13B-Na<sub>V</sub>1.7 interaction in pain signaling.

Journal: Neurobiology of pain (Cambridge, Mass.)

Status: data only, 1 dataset cited

[8958] doi:10.1049/htl2.70053 [paper, data]

BTdiagAI: A Web-Deployed Hybrid Framework for Brain Tumor Classification Using Optimized MRI Preprocessing and Deep Learning Fusion.

Journal: Healthcare technology letters

Status: data only, 7 datasets cited

[8959] doi:10.1049/htl2.70059 [paper, data]

Toward Efficient Identification of Retinal Diseases: A Lightweight Convolutional Neural Network-Based Approach Using Optical Coherence Tomography.

Journal: Healthcare technology letters

Status: data only, 2 datasets cited

[8960] doi:10.1049/htl2.70084 [paper, data]

Machine Learning-Based Depression Recognition With Preserved Efficacy From Compressed EEG Signals Using Wavelet Transform and Adaptive Filtering.

Journal: Healthcare technology letters

Status: data only, 1 dataset cited

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