Every paper, by date: page 42

4,974 papers with a page: 2,882 with their authors' code, 597 with code on request, 1,495 with data only. The most recent first, 100 a page. Page 42 of 50: 1 May 2026 to 20 April 2026.

Friday, 1 May 2026 (100 papers, 60 on this page)

[4101] Code ↔ Paper doi:10.1093/bib/bbag259 [paper, repository]

PVAED: prior-guided variational autoencoders with diffusion denoising for interpretable single-cell representation learning.

Journal: Briefings in bioinformatics

Authors' code: MaLab-scGenomics/PriorVAED (no license), pvaed.readthedocs.io (no license)

Status: code verified, 19 files readable, 6 matches

[4102] Code ↔ Paper doi:10.1093/bib/bbag275 [paper, repository]

Nonlinear kernel-based high-dimensional inference for set-based genetic association studies.

Journal: Briefings in bioinformatics

Authors' code: zhangzechen123/NL-HSIM (MIT)

Status: code verified, 41 files readable, 1 match

[4103] Code ↔ Paper doi:10.1093/bib/bbag298 [paper, repository]

Empowering multifaceted analysis of spatial transcriptomics data with RGAST.

Journal: Briefings in bioinformatics

Authors' code: pypi.org/project/rgast (no license), GYQ-form/RGAST (MIT)

Status: code verified, 14 files readable, 11 matches

[4104] Code ↔ Paper doi:10.1093/bib/bbag331 [paper, repository]

SPOmiAlign: a modality-agnostic computational framework for multimodal spatial omics alignment enabled by a feature matching foundation model.

Journal: Briefings in bioinformatics

Authors' code: cortex-lab/allenccf (no license), gpenglab/misar-seq (no license), bioinfo-biols/flow2spatial (GPL-3.0), wangyiyuyang/SPOmiAlign (no license)

Status: code verified, 163 files readable, 8 matches

[4105] Code ↔ Paper doi:10.1093/bib/bbag339 [paper, repository]

scDeepAPA: a deep learning framework for single-cell alternative polyadenylation identification.

Journal: Briefings in bioinformatics

Authors' code: QSong-github/scDeepAPA (no license), Zenodo 15066940 (CC-BY-4.0), saketkc/gencode_regions (BSD-2-Clause), QSong-github/scAPA (no license)

Status: code verified, 80 files readable, 7 matches

[4106] Code ↔ Paper doi:10.1093/bib/bbag404 [paper, repository]

Navigating cell maps by deep learning integration of single-cell and spatially resolved transcriptomics.

Journal: Briefings in bioinformatics

Authors' code: digitalcytometry/cytospace (other), shaoqiangzhang/Cell2Map (GPL-3.0)

Status: code verified, 32 files readable, 6 matches

[4107] Code ↔ Paper doi:10.1093/bioinformatics/btag169 [paper, repository]

Bidirectional Mamba-2 boosts EEG super-resolution via regression and diffusion.

Journal: Bioinformatics (Oxford, England)

Authors' code: UgoLomoio/DiBiMa-EEGSR (MIT), huggingface.co/ugo96/dibima-eegsr (MIT), huggingface.co/spaces/ugo96/dibima-eegsr-demo (MIT)

Status: code verified, 30 files readable, 18 matches

[4108] doi:10.1093/brain/awaf360 [paper, data]

MYC-driven gliosis impairs neuron-glia communication in amyotrophic lateral sclerosis.

Journal: Brain : a journal of neurology

Status: data only, 2 datasets cited

[4109] doi:10.1093/brain/awag015 [paper, data]

Brainstem pathology in anti-IgLON5 disease: new insights into early events and tau progression.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[4110] Code ↔ Paper doi:10.1093/brain/awag074 [paper, repository]

Empathy motivation is preserved following amygdala damage.

Journal: Brain : a journal of neurology

Authors' code: OSF d4epm (no license)

Status: code verified, 2 files readable

[4111] Code ↔ Paper doi:10.1093/cercor/bhag058 [paper, repository]

Visual field inhomogeneities and the architectonics of early visual cortex shape visual working memory.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF pjmgb (no license)

Status: code verified, 7 files readable, 3 matches

[4112] Code ↔ Paper doi:10.1093/cercor/bhag062 [paper, repository]

Dynamic representations of valence in anterior cingulate cortex in mice.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 19339357 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[4113] Code ↔ Paper doi:10.1093/jnen/nlaf163 [paper, repository]

Quantification of Ki-67 labeling index in pediatric brain tumor immunohistochemistry images.

Journal: Journal of neuropathology and experimental neurology

Authors' code: Christoforos-Spyretos/QuPath-Automatic-Cell-Detection-for-Ki-67-WSIs (GPL-3.0)

Status: code verified, 3 files readable, 2 matches

[4114] doi:10.1093/jvimsj/aalag085 [paper, data]

Progressive abnormal gait in an adult Jack Russell Terrier with a homozygous frameshift variant in SETX (senataxin).

Journal: Journal of veterinary internal medicine

Status: data only, 1 dataset cited

[4115] Code ↔ Paper doi:10.1093/nar/gkag451 [paper, repository]

An in vivo parallelized reporter assay to uncover tissue-specific splicing regulatory sequences in a multicellular animal.

Journal: Nucleic acids research

Authors' code: Zenodo 15757714 (Apache-2.0)

Status: code verified, 4 files readable, 1 match

[4116] Code ↔ Paper doi:10.1093/nar/gkag466 [paper, repository]

Logistic regression for estimating functional effects with spatial transcriptomics.

Journal: Nucleic acids research

Authors' code: Zenodo 19681335 (CC-BY-4.0)

Status: code verified

[4117] Code ↔ Paper doi:10.1093/nar/gkag544 [paper, repository]

Single-base resolution atlas reveals moderate conservation and regulatory diversity of m6A modifications across mammals.

Journal: Nucleic acids research

Authors' code: XiaoxiaoZhang57/Evolutionary-analysis-of-m6A-in-mammals (MIT), Zenodo 20085328 (MIT)

Status: code verified, 20 files readable, 2 matches

[4118] Code ↔ Paper doi:10.1093/sleep/zsag030 [paper, repository]

Divergent disruption of brain networks following total and chronic sleep loss: a longitudinal fMRI study.

Journal: Sleep

Authors' code: PatrycjaScislewska/sleep_deprivation_graphs (no license)

Status: code verified, 5 files readable, 10 matches

[4119] doi:10.1097/md.0000000000048634 [paper, data]

Identifying therapeutic target genes for stroke through systematic druggable Mendelian randomization analysis.

Journal: Medicine

Status: data only, 1 dataset cited

[4120] doi:10.1111/acel.70494 [paper]

Exceptional Longevity Modifying Allele APOE2 Promotes DNA Signaling Pathways Resisting Cellular Senescence in Human Neurons.

Journal: Aging cell

Status: data only

[4121] Code ↔ Paper doi:10.1111/acel.70499 [paper, repository]

Brain Aging Mediating Heart Imaging-Derived Phenotypes and Mental and Nervous System Disorders.

Journal: Aging cell

Authors' code: WenJSu/Heart-brain-aging-disorders-pathways (no license)

Status: code verified, 7 files readable, 2 matches

[4122] doi:10.1111/acel.70544 [paper]

Multi-Omics Reveals Dysregulated Neurotransmitter Systems in Aging and CNS Disorders.

Journal: Aging cell

Status: code on request

[4123] Code ↔ Paper doi:10.1111/cogs.70220 [paper, repository]

Shared Neural Computations for Syntactic and Morphological Structures: Evidence From Mandarin Chinese.

Journal: Cognitive science

Authors' code: OSF qt6x8 (no license)

Status: code verified, 7 files readable, 3 matches

[4124] Code ↔ Paper doi:10.1111/cts.70577 [paper, repository]

Machine Learning-Based Prediction of Drug-Induced QTc Changes in a Large Finnish Biobank Cohort.

Journal: Clinical and translational science

Authors' code: Zenodo 15223007 (CC-BY-4.0), jjmpal/ecg_qtc (no license)

Status: code verified, 84 files readable, 6 matches

[4125] doi:10.1111/desc.70186 [paper]

The Genetic Origin of Uneven Cognitive Profiles in Heritable Neurodevelopmental Conditions and Individual Differences: Computational Investigations.

Journal: Developmental science

Status: code on request

[4126] Code ↔ Paper doi:10.1111/desc.70187 [paper, repository]

Prenatal Volume in the Bilateral Superior Temporal Gyrus Associates With Children's Expressive Vocabulary at 24-36 Months.

Journal: Developmental science

Authors' code: annikawerwach/child-volume-vocab (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[4127] doi:10.1111/desc.70188 [paper, data]

Contextual Transparency Supports Cognitive Control by Reducing Prefrontal Activation and Enhancing Cue Prioritization in Children.

Journal: Developmental science

Status: data only, 1 dataset cited

[4128] doi:10.1111/dgd.70060 [paper, data]

Atypical Cadherin Fat2 is Involved in Axogenesis of Cerebellar Granule Cells in Zebrafish.

Journal: Development, growth & differentiation

Status: data only, 1 dataset cited

[4129] Code ↔ Paper doi:10.1111/ejn.70521 [paper, repository]

Multivariate Pattern Analysis Identifies Potential Intertrial Resting-State EEG Biomarkers in Fibromyalgia.

Journal: The European journal of neuroscience

Authors' code: dinosoldic/eeg-preproc-erp (MIT)

Status: code verified, 9 files readable, 2 matches

[4130] Code ↔ Paper doi:10.1111/ejn.70523 [paper, repository]

The Impacts of Pregnancy on Cognition and Cell Proliferation in a Live-Bearing Fish (Poeciliopsis gracilis).

Journal: The European journal of neuroscience

Authors' code: figshare 26042641 (CC-BY-4.0)

Status: code verified

[4131] Code ↔ Paper doi:10.1111/ejn.70528 [paper, repository]

Dorsal Posterior Parietal Cortex Lesions Disrupt Spatial- but Not Motor-Based Inhibition.

Journal: The European journal of neuroscience

Authors' code: OSF bnh9e (no license)

Status: code verified, 15 files readable, 5 matches

[4132] Code ↔ Paper doi:10.1111/ejn.70538 [paper, repository]

Neural Tracking of Sustained Attention, Attention Switching, and Natural Conversation in Audiovisual Environments Using Wearable EEG.

Journal: The European journal of neuroscience

Authors' code: JohannaWil/audiovisual-attention-eeg-trf (MIT)

Status: code verified, 9 files readable, 5 matches

[4133] Code ↔ Paper doi:10.1111/ejn.70543 [paper, repository]

Neural Oscillations Track Subjective and Pupillary Arousal During Naturalistic Movie Viewing.

Journal: The European journal of neuroscience

Authors' code: OSF 75mzh (no license)

Status: code verified, 7 files readable, 7 matches

[4134] doi:10.1111/ejn.70548 [paper, data]

Conscious Tactile Perception Depends on Early Processing in Primary Somatosensory Cortex.

Journal: The European journal of neuroscience

Status: code on request, 1 dataset cited

[4135] doi:10.1111/jcmm.71154 [paper]

Mitophagy-Oxidative Stress Molecular Subtypes Define an Immunosuppressive Ecosystem and Vulnerabilities in Glioblastoma.

Journal: Journal of cellular and molecular medicine

Status: code on request

[4136] doi:10.1111/jnc.70448 [paper, data]

Hydroxytyrosol Mitigates Anxiety-Like Behaviors After a Traumatic Experience in Aged Mice in Parallel With Increased Neurogenesis in the Ventral and Dorsal Dentate Gyrus, and Preservation of Gut Microbiota Composition.

Journal: Journal of neurochemistry

Status: data only, 1 dataset cited

[4137] Code ↔ Paper doi:10.1111/mec.70360 [paper, repository]

Unmated Queens Show Worker-Like Behaviour and Gene Expression in Polygynous Colonies of the Ant Stigmatomma pallipes.

Journal: Molecular ecology

Authors' code: Joscolgan/stigmatomma_pallipes_genome (GPL-3.0)

Status: code verified, 14 files readable

[4138] doi:10.1111/psyp.70301 [paper]

Oscillatory Markers of Interoceptive Attention: Beta Suppression as a Neural Signature of Heartbeat Processing.

Journal: Psychophysiology

Status: code on request

[4139] Code ↔ Paper doi:10.1111/psyp.70306 [paper, repository]

From Feedback-Learning to Semantic Memory: Can Feedback-Related Brain Activity Predict Object-Word Associations?

Journal: Psychophysiology

Authors' code: OSF s36y2 (no license)

Status: code verified, 41 files readable, 7 matches

[4140] doi:10.1111/psyp.70318 [paper, data]

EEG Based Decoding of the Perception and Regulation of Taboo Words.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[4141] Code ↔ Paper doi:10.1158/2159-8290.cd-25-1222 [paper, repository]

PD-1 Blockade-Induced DKK1 Expression by CD8+ T Cells Promotes Blood-Brain Barrier Permeabilization.

Journal: Cancer discovery

Authors' code: codeocean:4833035 (no license)

Status: code found, not verified yet

[4142] Code ↔ Paper doi:10.1158/2767-9764.crc-25-0710 [paper, repository]

MRI Deep Learning for Differentiating Glioblastoma, IDH Wild-type from Central Nervous System Diffuse Large B-cell Lymphoma.

Journal: Cancer research communications

Authors' code: slowvak/BrainLesionClassifier (no license)

Status: code verified, 3 files readable, 3 matches

[4143] doi:10.1167/iovs.67.5.39 [paper, data]

Sexual Dimorphism Is Associated With Corneal Nerve and Epithelial Alterations and Tear-Film Defects in Pax6 Haploinsufficiency Mouse Model.

Journal: Investigative ophthalmology & visual science

Status: data only, 1 dataset cited

[4144] Code ↔ Paper doi:10.1167/iovs.67.5.73 [paper, repository]

Identification of a Small-Molecule Modulator of Astrocyte Reactivity for Optic Nerve Protection.

Journal: Investigative ophthalmology & visual science

Authors' code: gpertea/gffcompare (MIT), broadinstitute/Drop-seq (MIT)

Status: code verified, 752 files readable, 2 matches

[4145] doi:10.1167/jov.26.5.6 [paper, data]

Optical and neural contributions to contrast sensitivity: A factor analysis of individual differences with and without adaptive optics.

Journal: Journal of vision

Status: data only, 1 dataset cited

[4146] Code ↔ Paper doi:10.1167/jov.26.5.7 [paper, repository]

Representations in vision and language converge in a shared, multidimensional space of perceived similarities.

Journal: Journal of vision

Authors' code: masika03/covertMA (no license)

Status: code verified, 29 files readable, 17 matches

[4147] Code ↔ Paper doi:10.1182/bloodadvances.2025019294 [paper, repository]

Plasma proteome signatures are predictive of mortality in sickle cell disease.

Journal: Blood advances

Authors' code: mhi-humangenetics.org/en/resources (no license)

Status: code verified

[4148] doi:10.1186/s12883-026-04944-z [paper, data]

CACNA1A c.5610del in a three-generation family: epilepsy with ataxia/migraine.

Journal: BMC neurology

Status: data only, 1 dataset cited

[4149] doi:10.1186/s12915-026-02605-8 [paper, data]

Role of neuronal oscillations in memory driven visual processing.

Journal: BMC biology

Status: data only, 1 dataset cited

[4150] doi:10.1186/s12964-026-02920-1 [paper, data]

ARNT2 repression disrupts neuronal identity and promotes glioblastoma growth.

Journal: Cell communication and signaling : CCS

Status: data only, 1 dataset cited

[4151] doi:10.1210/endocr/bqag049 [paper, data]

Kisspeptin made in the preoptic area is required for normal estradiol-induced LH surges and optimal fertility in females.

Journal: Endocrinology

Status: data only, 1 dataset cited

[4152] Code ↔ Paper doi:10.3389/fnagi.2026.1789408 [paper, repository]

Biological brain aging, cognitive-motor decline and vascular risk: a multivariate imaging analysis of 40,579 individuals.

Journal: Frontiers in aging neuroscience

Authors' code: rmarkello/pyls (GPL-2.0)

Status: code verified, 34 files readable, 3 matches

[4153] Code ↔ Paper doi:10.3389/fnimg.2026.1753534 [paper, repository]

Anatomically constrained volumetric smoothing enhances fMRI reliability while avoiding smoothing artifacts.

Journal: Frontiers in neuroimaging

Authors' code: ellisdg/csmooth (Apache-2.0)

Status: code verified, 15 files readable, 3 matches

[4154] Code ↔ Paper doi:10.3389/fnins.2026.1720206 [paper, repository]

Computational learning phenotypes are not related to individual differences in resting-state fMRI connectivity.

Journal: Frontiers in neuroscience

Authors' code: learning-memory-and-decision-lab (no license)

Status: code verified

[4155] doi:10.3389/or.2026.1699224 [paper, data]

Clinical characteristics and outcomes of pediatric cancer patients admitted to the intensive care unit during treatment: a retrospective analysis.

Journal: Oncology reviews

Status: data only, 1 dataset cited

[4156] Code ↔ Paper doi:10.3390/bios16050258 [paper, repository]

A Two-Stage EEG Microstate Fusion Framework for Dementia Screening and Alzheimer's Disease/Frontotemporal Dementia Differentiation.

Journal: Biosensors

Authors' code: winnile520-sys/AD-FTD-HC-data-and-code (no license)

Status: dead link

[4157] doi:10.3390/diagnostics16091379 [paper, data]

Handcrafted Versus Deep Feature Extraction Methods for MRI-Based Multiple Sclerosis Diagnosis.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[4158] Code ↔ Paper doi:10.3390/genes17050540 [paper, repository]

Uncovering Latent Structure in Gliomas Using Multi-Omics Factor Analysis.

Journal: Genes

Authors' code: sysbiomed/MOFA-in-Gliomas (no license)

Status: code verified, 15 files readable, 4 matches

[4159] doi:10.3390/molecules31091511 [paper, data]

5-(Benzofuran-2-yl)-3-(2-chloro-4-fluorobenzyl)-1,3,4-oxadiazol-2(3H)-one (GM-90663) Alleviates Dravet Syndrome via Inhibiting Monoamine Oxidase Activity.

Journal: Molecules (Basel, Switzerland)

Status: data only, 1 dataset cited

[4160] doi:10.3390/s26092822 [paper, data]

Multi-Chaotic HEOA for Hardware-Aware Neural Architecture Search: Brain Tumor Classification on FPGA.

Journal: Sensors (Basel, Switzerland)

Status: code on request, 1 dataset cited

Tuesday, 21 April 2026 (5 papers)

[4161] doi:10.1016/j.omton.2026.201215 [paper]

Reprogramming the immune suppressive tumor microenvironment in glioma enhances the efficacy of immune-mediated gene therapy.

Journal: Molecular therapy. Oncology

Status: code on request

[4162] Code ↔ Paper doi:10.1038/s44220-026-00623-7 [paper, repository]

Optimizing functional connectivity scanning conditions for predicting autistic traits.

Journal: Nature. Mental health

Authors' code: clhorien/tasks_versus_rest_in_autism_prediction (no license)

Status: code verified, 7 files readable, 2 matches

[4163] Code ↔ Paper doi:10.1093/pnasnexus/pgag134 [paper, repository]

GSP Cochlea: A graph signal processing approach for studying sound encoding.

Journal: PNAS nexus

Authors' code: meliabonomo/GSPcochlea (GPL-3.0)

Status: code verified, 3 files readable

[4164] doi:10.3389/fimmu.2026.1780159 [paper, data]

The therapeutic effect and specific mechanism involved active Chinese medicine component biochaninA in glioma.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[4165] doi:10.3389/fnagi.2026.1792887 [paper, data]

Systematic proteomics reveals plasma NEFL as a robust predictor and pathological associate in <i>C9ORF72</i>-related neurodegeneration.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

Monday, 20 April 2026 (35 papers)

[4166] doi:10.1002/advs.75389 [paper]

Boosting Sensory Nerve-to-Bone Interactions Enhances Hedgehog Mediated Calvarial Bone Repair.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[4167] Code ↔ Paper doi:10.1002/gps3.70017 [paper, repository]

Shared genetic variants across substance use disorders implicate common neurobiological pathways, a genome-wide mixed methods study.

Journal: General psychiatry

Authors' code: precimed/mixer (GPL-3.0), precimed/GWAS_SUMSTAT (no license), precimed/pleiofdr (GPL-3.0)

Status: code verified, 55 files readable, 1 match

[4168] doi:10.1007/s12035-026-05792-1 [paper]

Identification and Experimental Validation of Biomarkers Associated with PI3K/AKT Signaling Pathway in Spinal Cord Injury.

Journal: Molecular neurobiology

Status: data only

[4169] Code ↔ Paper doi:10.1016/j.dcn.2026.101727 [paper, repository]

Neonatal brain activity across sleep states: Evidence from resting EEG and auditory event-related potentials.

Journal: Developmental cognitive neuroscience

Authors' code: EBBLab/SA-MADE (no license)

Status: code verified, 4 files readable, 3 matches

[4170] Code ↔ Paper doi:10.1016/j.isci.2026.115573 [paper, repository]

Female cortical cellular mosaicism underlies shared MeCP2 and PCB impacted gene pathways.

Journal: iScience

Authors' code: osmansharifi/PCB_mouse_snRNAseq (MIT), Zenodo 13761244 (CC-BY-4.0), osmansharifi/snrna-seq-pipeline (no license)

Status: code verified, 134 files readable, 11 matches

[4171] Code ↔ Paper doi:10.1016/j.isci.2026.115802 [paper, repository]

Dynamics of early gut microbiota maturation in extremely preterm infants and neurodevelopment at 2 years of age in a probiotic intervention trial.

Journal: iScience

Authors' code: magge30/PROPEL-2y-neurodevelopment (no license), ewels/MultiQC (GPL-3.0), FrederickHuangLin/ANCOMBC (no license), chanw0/SparseMCMM (other), thelovelab/tximport (no license)

Status: code verified, 795 files readable, 3 matches

[4172] Code ↔ Paper doi:10.1016/j.isci.2026.115804 [paper, repository]

Aberrant prefrontal activity and arousal level correlate with action initiation and response vigor in rats.

Journal: iScience

Authors' code: etsin.fairdata.fi (no license)

Status: code verified

[4173] doi:10.1016/j.isci.2026.115819 [paper]

Exposure to fibrillar proteins leads to widespread infiltration but only mild tau pathology in cortical organoids.

Journal: iScience

Status: code on request

[4174] doi:10.1016/j.isci.2026.115821 [paper]

Virus-host interactome reveals host cellular pathways perturbed by tick-borne encephalitis virus infection.

Journal: iScience

Status: code on request

[4175] Code ↔ Paper doi:10.1016/j.isci.2026.115824 [paper, repository]

Electrophysiologically informed spiking neural networks for fish-inspired navigation with boundary vector cells and hydrostatic pressure cues.

Journal: iScience

Authors' code: OSF ypmfq (no license)

Status: code verified, 11 files readable, 3 matches

[4176] Code ↔ Paper doi:10.1016/j.neuron.2026.03.034 [paper, repository]

Dentate gyrus interneurons modulate winner-take-all network dynamics in freely behaving mice.

Journal: Neuron

Authors' code: ThomasHainmueller/HainmuellerHeynold_et_al_2025 (no license), soltesz-lab/DG-Interneurons (GPL-3.0)

Status: code verified, 627 files readable, 40 matches

[4177] doi:10.1016/j.xcrm.2026.102758 [paper]

BDNF insufficiency exacerbates ALS progression.

Journal: Cell reports. Medicine

Status: code on request

[4178] doi:10.1021/acs.jctc.6c00146 [paper, data]

qNEP: A Highly Efficient Neuroevolution Potential with Dynamic Charges for Large-Scale Atomistic Simulations.

Journal: Journal of chemical theory and computation

Status: data only, 2 datasets cited

[4179] doi:10.1038/s41392-026-02652-1 [paper, data]

Targeting ATP11B-YAP axis repairs mitochondrial function and inhibits neuronal ferroptosis to attenuate age-related cognitive decline.

Journal: Signal transduction and targeted therapy

Status: data only, 2 datasets cited

[4180] Code ↔ Paper doi:10.1038/s41467-026-71391-2 [paper, repository]

Accelerating Leigh syndrome drug discovery through deep learning screening in brain organoids.

Journal: Nature communications

Authors' code: osb-codes/dl_drug_repurposing (no license)

Status: code verified, 9 files readable, 4 matches

[4181] Code ↔ Paper doi:10.1038/s41467-026-71790-5 [paper, repository]

Recurrent DNA break clusters drive replication-stress-induced copy number variants and genome diversification.

Journal: Nature communications

Authors' code: DKFZ-ODCF/AlignmentAndQCWorkflows (MIT), CL-CHEN-Lab/RepliSeq (GPL-3.0), brainbreaks/GROseq (no license), dellytools/delly (BSD-3-Clause), friendsofstrandseq/mosaicatcher-pipeline (MIT), Zenodo 10843397 (CC-BY-4.0), Zenodo 10838367 (CC-BY-4.0), Zenodo 10838365 (CC-BY-4.0)

Status: code verified, 496 files readable, 3 matches

[4182] doi:10.1038/s41467-026-72067-7 [paper, data]

Engineered BCG selectively triggers trained immunity in tumor-associated macrophages and sensitizes glioblastoma to radiotherapy in mice.

Journal: Nature communications

Status: data only, 2 datasets cited

[4183] Code ↔ Paper doi:10.1038/s41531-026-01335-6 [paper, repository]

StimVision: smartphone video kinematics to optimize DBS programming in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: Flolan2/StimVision_data (no license)

Status: code verified, 5 files readable, 2 matches

[4184] Code ↔ Paper doi:10.1038/s41531-026-01354-3 [paper, repository]

Neuromodulation-induced normalization of cortical metastable dynamics signatures in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: PSYMARKER/leida-python (MIT), chenfei-ye/WEIDA-DBS (no license)

Status: code verified, 39 files readable, 18 matches

[4185] doi:10.1038/s41598-026-48067-4 [paper]

Semantic processing and individual suggestibility modulate motor preparation and perceived distance for looming sounds entering the peripersonal space.

Journal: Scientific reports

Status: code on request

[4186] Code ↔ Paper doi:10.1038/s43587-026-01106-1 [paper, repository]

Repurposing drugs for the prevention of vascular dementia using evidence from drug target Mendelian randomization.

Journal: Nature aging

Authors' code: Zenodo 15190762 (MIT), victoriatb/vad_dtmr2025 (MIT)

Status: code verified, 14 files readable, 4 matches

[4187] doi:10.1128/jvi.02063-25 [paper, data]

HIV transgenic mouse monocytes display increased <i>in vivo</i> migration across the blood-brain barrier associated with increased expression of genes associated with mononuclear leukocyte movement.

Journal: Journal of virology

Status: data only, 1 dataset cited

[4188] doi:10.1161/jaha.125.046208 [paper, data]

Integration of Genome-Wide Association Studies With Single-Cell and Bulk Expression Quantitative Trait Locus to Identify Stroke Susceptibility Genes.

Journal: Journal of the American Heart Association

Status: data only, 1 dataset cited

[4189] Code ↔ Paper doi:10.1177/18796397261443137 [paper, repository]

Towards AI-driven prediction of <i>HTT</i> CAG size in super-expanded human spiny projection neurons from Huntington disease donors.

Journal: Journal of Huntington's disease

Authors' code: MaestSi/ELongATE_CAG_sizing (GPL-3.0)

Status: empty repository, 2 files readable

[4190] doi:10.1186/s11556-026-00410-4 [paper]

Not just how much, but how it's done: movement activity bout distributions and everyday cognition in older adults with elevated dementia risk.

Journal: European review of aging and physical activity : official journal of the European Group for Research into Elderly and Physical Activity

Status: code on request

[4191] doi:10.1186/s13054-026-06030-9 [paper]

Autoregulation-guided intracranial pressure and cerebral perfusion pressure targets in different subtypes and characteristics of traumatic brain injury.

Journal: Critical care (London, England)

Status: code on request

[4192] doi:10.1186/s13229-026-00716-1 [paper, data]

Nitric oxide inhibition ameliorates cortical proteomic changes in the Cntnap2<sup>-/-</sup> and Shank3<sup>Δ4-22</sup> mouse models of autism spectrum disorder.

Journal: Molecular autism

Status: data only, 4 datasets cited

[4193] Code ↔ Paper doi:10.1242/jeb.251686 [paper, repository]

Neural and behavioral responses to reproductive signals in male chorus frogs.

Journal: The Journal of experimental biology

Authors' code: figshare 31904626 (CC-BY-4.0)

Status: code verified, 1 file readable, 5 matches

[4194] doi:10.1371/journal.pone.0345890 [paper, data]

Differential regulation of p62-ubiquitin conjugates in neurons versus astrocytes during cellular stress.

Journal: PloS one

Status: data only, 1 dataset cited

[4195] doi:10.1371/journal.pone.0347532 [paper, data]

Deciphering the molecular network of Trichostatin A in regulating Alzheimer's disease screening of core genes and mechanistic investigation based on multidimensional bioinformatics and molecular simulation.

Journal: PloS one

Status: data only, 1 dataset cited

[4196] Code ↔ Paper doi:10.1523/eneuro.0468-25.2026 [paper, repository]

A Multi-Network Approach Identifies Proteins Related to Dendritic Spines in Alzheimer's Disease.

Journal: eNeuro

Authors' code: ehobby33/eNeuro-repo (MIT)

Status: code verified, 3 files readable, 9 matches

[4197] Code ↔ Paper doi:10.21203/rs.3.rs-9326213/v1 [paper, repository]

Multi-task fMRI outperforms resting-state fMRI for revealing task-invariant organization of the human brain

Journal: Research Square (preprint)

Authors' code: DiedrichsenLab/Functional_Fusion (no license), carobellum/RestMultitask (MIT), DiedrichsenLab/HierarchBayesParcel (MIT), DiedrichsenLab/cortico_cereb_connectivity (MIT), diedrichsenlab/MultiTaskBattery (MIT)

Status: code verified, 247 files readable, 10 matches

[4198] doi:10.3389/fmed.2026.1811410 [paper]

<i>Epimedium</i> attenuates neuroinflammation and ameliorates Alzheimer's disease through a KAT2B-dependent mechanism.

Journal: Frontiers in medicine

Status: data only

[4199] Code ↔ Paper doi:10.7554/elife.102309 [paper, repository]

Dimorphic neural network architecture prioritizes sexual-related behaviors in male <i>Caenorhabditis elegans</i>.

Journal: eLife

Authors' code: supp:PMC13095209/elife-102309-code1.zip (no license)

Status: code verified, 1 file readable

[4200] Code ↔ Paper doi:10.7554/elife.110000 [paper, repository]

Alpha-band phase modulates perceptual sensitivity by changing internal noise and sensory tuning.

Journal: eLife

Authors' code: antoniofs23/reverse-correlation-demo (GPL-3.0), OSF eup3s (no license)

Status: code verified, 6 files readable, 1 match

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