Every paper, by date: page 42

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 42 of 200: 1 January 2026 to 23 December 2025.

Thursday, 1 January 2026 (292 papers, 26 on this page)

[9185] doi:10.2174/0115734056447226260528100852 [paper, data]

An Efficient and Cohesive System for Enhanced Accuracy in Malignant Brain Tumor Diagnosis.

Journal: Current medical imaging

Status: data only, 1 dataset cited

[9186] doi:10.2174/0115734056454245260313071547 [paper, repository]

Glymphatic System Dysfunction Associated with Inflammatory Factors in Asymptomatic Neurosyphilis.

Journal: Current medical imaging

Authors' code: Center-of-Imaging-Biomarker-Development/chp_seg (no license)

Status: empty repository, 1 file readable

[9187] doi:10.2174/0115734056507718260630052655 [paper, data]

BrainYOLO-MCA: An Improved YOLOv11 with Multi-Scale Channel Attention for Brain Tumor Detection.

Journal: Current medical imaging

Status: data only, 2 datasets cited

[9188] doi:10.2174/0118715303350736241220090850 [paper, repository]

Neuroprotective Potential of Jimson Weed in Methotrexate-Induced Neurotoxicity: Insights into Anti-Oxidative, Anti-Inflammatory, and Anti-Apoptotic Mechanisms <i>via</i> Modulation of Caspase-3, Interleukin-6, and Tumor Necrosis Factor-Alpha: <i>In silico</i>.

Journal: Endocrine, metabolic & immune disorders drug targets

Authors' code: Zenodo 1311171 (CC-BY-4.0), Zenodo 1311167 (CC-BY-4.0)

Status: empty repository

[9189] doi:10.2463/mrms.mp.2026-0092 [paper, repository]

WCCAN: Windowed Cross-contrast Attention Network for Multi-contrast Brain MR Image Super-resolution.

Journal: Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine

Authors' code: raniasaoudi/WCCAN (no license)

Status: code verified, 2 files readable, 3 matches

[9190] doi:10.3390/diagnostics16010139 [paper, data]

AI-Guided Inference of Morphodynamic Attractor-like States in Glioblastoma.

Journal: Diagnostics (Basel, Switzerland)

Status: code on request, 1 dataset cited

[9191] doi:10.3390/genes17010051 [paper, repository]

Somatostatin-Expressing Neurons Regulate Sleep Deprivation and Recovery.

Journal: Genes

Authors' code: tagtag/sleep_deprivation (no license)

Status: code verified, 2 files readable, 2 matches

[9192] doi:10.3988/jcn.2025.0219 [paper, data]

The Oral Microbiome in Amyotrophic Lateral Sclerosis Shows Differentially Abundant Organisms in Limb Versus Bulbar Onset Disease: A Binational Study.

Journal: Journal of clinical neurology (Seoul, Korea)

Status: data only, 1 dataset cited

[9193] doi:10.5334/jors.610 [paper, repository]

The Population Spatial Frequency Toolbox.

Journal: Journal of open research software

Authors' code: luisdramirez/pSF-Toolbox (GPL-3.0)

Status: code verified, 31 files readable, 5 matches

[9194] doi:10.5812/ijpr-169453 [paper]

RNA-Seq Analysis of Morphine-Induced Gene Expression Changes in the Mouse Nucleus Accumbens.

Journal: Iranian journal of pharmaceutical research : IJPR

Status: data only

[9195] doi:10.7150/thno.111550 [paper, repository]

Deep learning identifies TP-41 for methylglyoxal scavenging in Alzheimer's treatment.

Journal: Theranostics

Authors' code: labnams/DeepMGO (no license)

Status: code verified, 2 files readable, 1 match

[9196] doi:10.7150/thno.117418 [paper, data]

Longitudinal <i>in vivo</i> (<i>R</i>)-[<sup>18</sup>F]FBFP PET imaging for preclinical evaluation of cerebral sigma-1 receptor after ischemic stroke.

Journal: Theranostics

Status: data only, 1 dataset cited

[9197] doi:10.7150/thno.117635 [paper, data]

Targeting NDUFS8 in basal forebrain ameliorates cognitive decline related to chronic cerebral hypoperfusion.

Journal: Theranostics

Status: data only, 1 dataset cited

[9198] doi:10.7150/thno.122241 [paper, data]

CD146<sup>+</sup> pericyte-like lung cancer brain metastatic stem cells promote tumor angiogenesis through dual regulatory effects on the VEGF/VEGFR axis.

Journal: Theranostics

Status: data only, 1 dataset cited

[9199] doi: [paper, data]

Analysis of brain network temporal reconfiguration and frequency-domain features during dynamic orchestral segmentation transition based on electroencephalography

Journal: PloS one

Status: data only, 1 dataset cited

[9200] doi: [paper, data]

Differential Impacts of Fronto‐Cerebellar tACS and tVNS on Motor Learning: Evidence for Sex‐Related Neural Modulation

Journal: Neural plasticity

Status: data only, 1 dataset cited

[9201] doi: [paper, repository]

Functional specialisation across the first five years of life: A longitudinal characterisation of social perception with fNIRS

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: globalfnirs (no license)

Status: code verified

[9202] doi: [paper, repository]

Emergent multiscale organisation of neural dynamics fragments in anaesthesia

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: bmilinkovic/di_eeg (no license)

Status: code verified, 23 files readable, 6 matches

[9203] doi: [paper, repository]

Getting blood from a stone: Improving brain–behavior inferences without brain data

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: dhalpern/getting_blood_from_a_stone (no license)

Status: code verified, 11 files readable

[9204] doi: [paper, repository]

Neural integration of affective prosodic and semantic cues in non-literal forms of speech understanding

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: AdrienWitt/ProsodySemanticsIntegration_Scripts (no license)

Status: code verified, 7 files readable, 6 matches

[9205] doi: [paper, data]

Micro-bursts matter: vigorous intermittent lifestyle physical activity and risk of common brain disorders in a prospective cohort study

Journal: The international journal of behavioral nutrition and physical activity

Status: data only, 2 datasets cited

[9206] doi: [paper, data]

Robotic Training and Neural Reorganization in Stroke: A Systematic Review [version 1; peer review: 2 approved]

Journal: F1000Research

Status: data only, 1 dataset cited

[9207] doi: [paper, data]

The Role and Mechanism of Hair Follicle Neural Crest Stem Cells and Their Small Extracellular Vesicles in Repair of Peripheral Nerve Injury

Journal: Stem cells international

Status: data only, 1 dataset cited

[9208] doi: [paper, repository]

Altered EEG-derived functional brain states in Parkinson's disease with mild cognitive impairment

Journal: Brain communications

Authors' code: yuxin1203/Improved-LEiDA-Algorithm (no license)

Status: code verified, 4 files readable

[9209] doi: [paper, repository]

Stroke recovery beyond initial severity: the complementary roles of brain structure and brain function in acute stroke

Journal: Brain communications

Authors' code: cathazi/Zich_2026_AcuteStroke (no license)

Status: empty repository

[9210] doi: [paper]

Submillimeter diffusion MRI using an in-plane segmented 3D multi-slab acquisition and denoiser-regularized reconstruction

Journal: Medical image analysis

Status: code on request

Wednesday, 31 December 2025 (17 papers)

[9211] doi:10.1007/s10238-025-02003-4 [paper, data]

Multiomics analysis and prognostic modeling reveal the molecular features and potential therapeutic targets of breast cancer brain metastasis.

Journal: Clinical and experimental medicine

Status: data only, 1 dataset cited

[9212] doi:10.1016/j.csbj.2025.12.032 [paper, repository]

Oxidative stress-driven transcriptomic remodeling in human astrocytes reveals network signatures associated with neurodegenerative and cardiovascular processes.

Journal: Computational and structural biotechnology journal

Authors' code: abotlp/Astrocytes_paper (no license)

Status: code verified, 6 files readable, 4 matches

[9213] doi:10.1016/j.nicl.2025.103940 [paper, repository]

Individualized functionnectome for the statistical assessment of white matter circuits underlying task-fMRI activations in glioma patients.

Journal: NeuroImage. Clinical

Authors' code: scilus/scilpy (MIT), NotaCS/Functionnectome (GPL-3.0), Zenodo 17526354 (CC-BY-4.0)

Status: code verified, 615 files readable, 6 matches

[9214] doi:10.1016/j.omtn.2025.102815 [paper, repository]

Atrophin-1 antisense oligonucleotide provides robust protection from pathology in a fully humanized DRPLA model.

Journal: Molecular therapy. Nucleic acids

Authors' code: doi:10.5061/dryad.1vhhmgr7k (no license), Zenodo 18177004 (MIT)

Status: code verified, 8 files readable, 4 matches

[9215] doi:10.1038/s41467-025-67744-y [paper, repository]

4R-tau seeding activity reveals molecular subtypes in progressive supranuclear palsy.

Journal: Nature communications

Authors' code: tallulandrews/PSP_Spatial (GPL-3.0)

Status: code verified, 16 files readable, 4 matches

[9216] doi:10.1038/s41467-025-67785-3 [paper]

Connectivity of the adult human brain with sequential neurogenesis of circuits and transcriptomics signatures.

Journal: Nature communications

Status: code on request

[9217] doi:10.1038/s41598-025-33910-x [paper, data]

Research on multimodal interaction intention recognition based on EEG, eye movement, and gesture signals.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[9218] doi:10.12688/f1000research.169308.2 [paper, data]

Bromelain Restores Glutamatergic Homeostasis via Regulation of NR2A, GLT-1, EAAC1, and xCT in Arsenic-Induced Cerebral Cortex and Hippocampal Neurotoxicity.

Journal: F1000Research

Status: data only, 1 dataset cited

[9219] doi:10.1371/journal.pone.0339900 [paper, data]

In vivo and in vitro susceptibility and inflammatory response of postnatal mouse cortical neurons and glial cells to zika virus infection.

Journal: PloS one

Status: data only, 1 dataset cited

[9220] doi:10.1371/journal.pone.0339924 [paper, repository]

Correlation study of brain function changes after chemotherapy in breast cancer patients by automated fiber quantification based on diffusion tensor imaging.

Journal: PloS one

Authors' code: yeatman-lab/AFQ (no license)

Status: dead link

[9221] doi:10.21037/qims-2025-737 [paper, repository]

Deep medullar veins: predictors of clinical progression in Alzheimer's disease.

Journal: Quantitative imaging in medicine and surgery

Authors' code: ysu001/PUP (BSD-3-Clause)

Status: code verified, 277 files readable

[9222] doi:10.2147/prbm.s552134 [paper]

Dynamic Brain Network Biomarkers for Depression Prediction: A Multi-Cohort Analysis of Global Neuroimaging Databases.

Journal: Psychology research and behavior management

Status: code on request

[9223] doi:10.3390/brainsci16010066 [paper, data]

From Imagination to Immersion: The Impact of Augmented Reality Instruction on Musical Emotion Processing: An fNIRS Hyperscanning Study.

Journal: Brain sciences

Status: data only, 1 dataset cited

[9224] doi:10.3390/ijms27010436 [paper, data]

Disruption of the Placenta-Brain Axis in Transgenic Mice Lacking Serotonin Transporter (SERT) in Trophoblast Cells.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[9225] doi:10.59390/001c.154223 [paper, repository]

An Advanced Undergraduate Laboratory Course: Calcium Imaging and Data Analysis - a Mini Graduate Research Experience.

Journal: Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience

Authors' code: hbai521/calcium_imaging (no license)

Status: code verified, 9 files readable, 3 matches

[9226] doi:10.7554/elife.106658 [paper, repository]

Coordinated spinal locomotor network dynamics emerge from cell-type-specific connectivity patterns.

Journal: eLife

Authors' code: fwandler/ZFswim (MIT)

Status: code verified, 7 files readable, 2 matches

[9227] doi:10.7554/elife.108049 [paper, repository]

Decision-making components and times revealed by the single-trial electroencephalogram.

Journal: eLife

Authors' code: GWeindel/decision-times (BSD-3-Clause), OSF j6xuv (no license)

Status: code verified, 26 files readable, 6 matches

Tuesday, 30 December 2025 (37 papers)

[9228] doi:10.1002/ana.78132 [paper, data]

Human Brain Contusions Contain Pathogenic Transmissible Species that Induce Progressive Cognitive Decline and Tau Pathology in Mice.

Journal: Annals of neurology

Status: data only, 1 dataset cited

[9229] doi:10.1002/dad2.70238 [paper, repository]

Eye tracking as a diagnostic tool in Alzheimer's disease, mild cognitive impairment, and related dementias: a systematic review.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: gustavoveron/DADM_2025_Review (no license)

Status: code verified, 11 files readable, 15 matches

[9230] doi:10.1007/s12672-025-04375-1 [paper, data]

VAMP5 promotes glioma progression through bioinformatics analysis clinical correlation and functional validation.

Journal: Discover oncology

Status: data only, 1 dataset cited

[9231] doi:10.1016/j.dcn.2025.101666 [paper, data]

The association between longitudinal changes in inter-hemispheric IPS functional connectivity and math gains depends on children's age and task requirements.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[9232] doi:10.1016/j.nbd.2025.107253 [paper, repository]

Spinal circuit mechanisms constrain therapeutic windows for ALS intervention: A computational modeling study.

Journal: Neurobiology of disease

Authors' code: Zenodo 18185871 (MIT), Zenodo 10125416 (GPL-2.0), allodi-lab/cpg_modeling_als (MIT)

Status: code verified, 68 files readable, 12 matches

[9233] doi:10.1016/j.nbd.2025.107254 [paper, repository]

The effects of alcohol dependence on the CSF proteome in mice: Evidence for blood-brain barrier dysfunction and neuroinflammation.

Journal: Neurobiology of disease

Authors' code: NataliePTurner/MouseCSF (no license)

Status: code verified, 7 files readable, 6 matches

[9234] doi:10.1038/s41467-025-67823-0 [paper, repository]

Application of kilohertz-frequency block to mitigate off-target motor effects of vagus nerve stimulation in swine.

Journal: Nature communications

Authors' code: Zenodo 17781109 (CC0-1.0), ludwig-lab/ludwig_hfblock_ncomms_2025 (CC0-1.0)

Status: code verified, 28 files readable, 8 matches

[9235] doi:10.1038/s41467-025-67857-4 [paper, repository]

Flexible computation of object motion and depth based on viewing geometry inferred from optic flow.

Journal: Nature communications

Authors' code: OSF zy8w6 (no license)

Status: code verified, 3 files readable, 5 matches

[9236] doi:10.1038/s41537-025-00714-x [paper, repository]

Polygenic risk for schizophrenia is associated with white matter microstructure, cognitive and mental health.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: QianQian1213/PRSscz_brainhealth (no license)

Status: code verified, 6 files readable, 1 match

[9237] doi:10.1038/s41593-025-02146-3 [paper, repository]

An open science resource for accelerating scalable digital health research in autism and other neurodevelopmental conditions.

Journal: Nature neuroscience

Authors' code: Dinstein-Lab/SSP_manuscript (no license)

Status: code verified, 11 files readable, 3 matches

[9238] doi:10.1038/s41598-025-29250-5 [paper, repository]

Mapping spatial organization of in vitro neuronal networks using high-content imaging.

Journal: Scientific reports

Authors' code: Zenodo 17555117 (CC-BY-4.0), dimphnameijerlab/mapping-spatial-organization-of-in-vitro-neuronal-networks-using-high-content-imaging (no license)

Status: code verified, 60 files readable, 5 matches

[9239] doi:10.1038/s41598-025-31385-4 [paper, repository]

Contours drive distinct orientation selectivity in the human visual system.

Journal: Scientific reports

Authors' code: seoheehan94/2_Orientation_Tuning (no license)

Status: code verified, 87 files readable, 9 matches

[9240] doi:10.1038/s41598-025-33697-x [paper, repository]

Stereology with OPEN-Stereo: low-cost, accessible, and accurate cellular quantification.

Journal: Scientific reports

Authors' code: OPEN-stereology/OPEN-stereology_manuscript (other)

Status: code verified, 9 files readable

[9241] doi:10.1038/s41598-025-33765-2 [paper]

Machine learning helps predict early onset psychosis with serum protein biomarkers, neuropsychometry, and clinicodemographic data.

Journal: Scientific reports

Status: code on request

[9242] doi:10.1038/s41598-025-33970-z [paper, data]

XcepFusion for brain tumor detection using a hybrid transfer learning framework with layer pruning and freezing.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9243] doi:10.1080/15592294.2025.2606983 [paper, data]

Silencing of optogenetic and chemogenetic transgenes in human iPSCs involves promoter methylation and methylation-independent mechanisms.

Journal: Epigenetics

Status: data only, 1 dataset cited

[9244] doi:10.1088/1741-2552/ae2955 [paper, repository]

sEEG-based brain-computer interfacing in a large adult and pediatric cohort.

Journal: Journal of neural engineering

Authors' code: michaeljensen42/Feasibility_stereo_EEG_BCI (no license)

Status: code verified, 26 files readable, 2 matches

[9245] doi:10.1088/1741-2552/ae2e89 [paper, data]

Temporal properties of direct current sensory block of the rat sciatic nerve using the C-fiber reflex.

Journal: Journal of neural engineering

Status: data only, 1 dataset cited

[9246] doi:10.1088/1741-2552/ae2e8b [paper, repository]

An algorithmic procedure for measuring deep brain stimulation-induced capsular activation using motor evoked potentials.

Journal: Journal of neural engineering

Authors' code: ericrcole/mep_detection (MIT)

Status: code verified, 33 files readable, 14 matches

[9247] doi:10.1093/braincomms/fcaf496 [paper, repository]

Subjective time perception in dementia: a behavioural and neuroanatomical analysis.

Journal: Brain communications

Authors' code: OSF w2jrs (no license)

Status: code verified, 73 files readable, 12 matches

[9248] doi:10.1177/09226028251395702 [paper, repository]

Contralesional Crossed Facilitation Impairs Bimanual Force Coordination in Chronic Stroke Survivors with Moderate-to-Mild Motor Impairment.

Journal: Restorative neurology and neuroscience

Authors' code: CunninghamLab/Publication-Data (MIT)

Status: code verified, 3 files readable, 1 match

[9249] doi:10.1186/s12876-025-04547-x [paper]

Integrated structural and functional brain imaging reveals biomarkers of disease activity in Crohn's disease.

Journal: BMC gastroenterology

Status: code on request

[9250] doi:10.1186/s12967-025-07505-z [paper, repository]

SLC25A mitochondrial carriers as biomarkers and therapeutic targets of spaceflight-induced dysfunction: the ADP/ATP carrier (AAC3) as a structural case study.

Journal: Journal of translational medicine

Authors' code: nasa/GeneLab_Data_Processing (no license)

Status: code verified, 177 files readable

[9251] doi:10.1186/s12974-025-03560-x [paper, data]

Tincr protects against cognitive decline by upregulating MYPT1 mediated phosphorylation of structural protein NM IIA in microglia.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[9252] doi:10.1186/s12974-025-03633-x [paper]

Astrocytic SIRT1 ameliorates cognitive deficits after traumatic brain injury via autophagy-mediated MEGF10 phagocytosis.

Journal: Journal of neuroinflammation

Status: code on request

[9253] doi:10.1186/s40246-025-00898-4 [paper, repository]

Prioritizing missense mutations via a deep learning phosphorylation prediction model.

Journal: Human genomics

Authors' code: zdangm/DeepMEP (no license), Zenodo 17906379 (CC-BY-4.0)

Status: code verified, 9 files readable, 14 matches

[9254] doi:10.1186/s40478-025-02185-8 [paper, data]

Cellular reprogramming of H3K27M pediatric high-grade glioma to neuron-like state.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[9255] doi:10.1371/journal.pcbi.1013789 [paper, repository]

When predict can also explain: Few-shot prediction to select better neural latents.

Journal: PLoS computational biology

Authors' code: KabirDabholkar/nlb_tools_fewshot (MIT), KabirDabholkar/hmm_analysis (no license), probml/dynamax (MIT), KabirDabholkar/ComputationThroughDynamicsBenchmark (no license), KabirDabholkar/ssm_analysis (no license), KabirDabholkar/STNDT_fewshot (MIT)

Status: code verified, 349 files readable, 11 matches

[9256] doi:10.1371/journal.pone.0330915 [paper, data]

Perinatal Imaging in Partnership with Families (PIPKIN): Longitudinal cohort study protocol.

Journal: PloS one

Status: data only, 1 dataset cited

[9257] doi:10.2196/70272 [paper, data]

Artificial Intelligence-Enhanced Multi-Algorithm R Shiny Application for Predictive Modeling and Analytics: Case Study of Alzheimer Disease Diagnostics.

Journal: JMIR aging

Status: data only, 1 dataset cited

[9258] doi:10.3390/cells15010067 [paper, data]

Multiomic Analyses Reveal Brainstem Metabolic Changes in a Mouse Model of Dravet Syndrome.

Journal: Cells

Status: data only, 1 dataset cited

[9259] doi:10.3390/e28010048 [paper, repository]

Geometric Learning of Canonical Parameterizations of 2<i>D</i>-Curves.

Journal: Entropy (Basel, Switzerland)

Authors' code: GiLonga/Geometric-Learning (no license), ioanaciuclea/geometric-learning-notebook (no license)

Status: code verified, 9 files readable, 13 matches

[9260] doi:10.3390/genes17010035 [paper]

Embryonic Thermal Manipulation Affects Neurodevelopment and Induces Heat Tolerance in Layers.

Journal: Genes

Status: data only

[9261] doi:10.3390/s26010237 [paper, repository]

A Method for Explainable Epileptic Seizure Detection Through Wavelet Transforms Obtained by Electroencephalogram-Based Audio Recordings.

Journal: Sensors (Basel, Switzerland)

Authors' code: FrancescoMercaldo/tami (MIT)

Status: code verified, 66 files readable, 6 matches

[9262] doi:10.3892/etm.2025.13057 [paper, data]

Novel variants in &lt;i&gt;STAG2&lt;/i&gt; and &lt;i&gt;PKD1&lt;/i&gt; associate with multiple congenital malformations and autosomal dominant polycystic kidney disease in a Chinese family: A case report and literature review.

Journal: Experimental and therapeutic medicine

Status: data only, 1 dataset cited

[9263] doi:10.4103/nrr.nrr-d-25-00902 [paper, data]

Mild and repetitive mild traumatic brain injury: Changes in microglial cells and synapses.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[9264] doi:10.59390/001c.147378 [paper, repository]

Investigating the Neural Control of Social Behavior in &lt;i&gt;Drosophila ⁠melanogaster&lt;/i&gt; Using a Low-Cost Optogenetics System.

Journal: Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience

Authors' code: hoopfere/flyrig (GPL-3.0)

Status: code verified, 3 files readable

Monday, 29 December 2025 (46 papers)

[9265] doi:10.1007/s12021-025-09762-1 [paper]

Application of Fully Convolutional Neural Networks in the Assessment of Cerebral White Matter Involvement in Primary Sjögren's Syndrome.

Journal: Neuroinformatics

Status: code on request

[9266] doi:10.1016/j.ajhg.2025.12.004 [paper, repository]

De novo variants in KDM2A cause a syndromic neurodevelopmental disorder.

Journal: American journal of human genetics

Authors' code: StephanHolgerD/methylmappdedupmethyldackelsnakemake (no license)

Status: empty repository, 1 file readable

[9267] doi:10.1016/j.crmeth.2025.101267 [paper, data]

In vivo AGO-APP for cell-type- and compartment-specific miRNA profiling in the mouse brain.

Journal: Cell reports methods

Status: code on request, 1 dataset cited

[9268] doi:10.1016/j.csbj.2025.12.019 [paper, repository]

The potential of deep learning on the discovery of new genes implicated in differences of sex development.

Journal: Computational and structural biotechnology journal

Authors' code: hAzimi/GONAD-ResNet (GPL-3.0)

Status: code verified, 8 files readable, 5 matches

[9269] doi:10.1016/j.ebiom.2025.106093 [paper]

Neurobehavioural links from infant screen time to anxiety.

Journal: EBioMedicine

Status: code on request

[9270] doi:10.1016/j.isci.2025.114554 [paper, repository]

Coordinated infraslow cortical oscillations of neuromodulators during NREM sleep.

Journal: iScience

Authors' code: MieAndersen/NE-oscillations (no license)

Status: code verified, 14 files readable, 4 matches

[9271] doi:10.1016/j.isci.2025.114559 [paper]

TREM2 and APOE are dispensable for microglial clearance of dying neurons revealed by &lt;i&gt;in vivo&lt;/i&gt; imaging.

Journal: iScience

Status: code on request

[9272] doi:10.1016/j.isci.2025.114562 [paper]

Bridging chunks during complex movement sequence execution.

Journal: iScience

Status: code on request

[9273] doi:10.1016/j.isci.2025.114563 [paper]

Multiple groups of neurons in the superior colliculus convert value signals into saccadic vigor.

Journal: iScience

Status: code on request

[9274] doi:10.1016/j.isci.2025.114564 [paper]

Preclinical drug screen identifies WEE1 inhibitor and vinca alkaloid as a combination treatment concept for Li-Fraumeni syndrome medulloblastoma.

Journal: iScience

Status: code on request

[9275] doi:10.1016/j.isci.2025.114567 [paper, repository]

Lumbar spinal Shox2 interneurons receive monosynaptic excitatory input from the lateral paragigantocellular nucleus in mouse.

Journal: iScience

Authors' code: heyshayna/SinghBrainstemManuscript2025 (no license)

Status: empty repository

[9276] doi:10.1016/j.isci.2025.114571 [paper, data]

Auricular transcutaneous vagus nerve stimulation alters directed cortical communication during intentional actions.

Journal: iScience

Status: data only, 1 dataset cited

[9277] doi:10.1017/s0033291725102833 [paper, data]

Neural systems underlying autobiographical memory dysregulations in depression: A neuroimaging meta-analysis.

Journal: Psychological medicine

Status: data only, 1 dataset cited

[9278] doi:10.1029/2025gh001485 [paper, data]

Seasonal and Meteorological Influences on Stroke Incidence and Outcomes in a Tropical Urban Setting: A 10-Year Retrospective Study in Douala, Cameroon.

Journal: GeoHealth

Status: data only, 1 dataset cited

[9279] doi:10.1038/s41467-025-67076-x [paper, repository]

Biomimetic model of corticostriatal micro-assemblies discovers a neural code.

Journal: Nature communications

Authors' code: neuroblox.ai (no license), Neuroblox/corticostriatal-circuit-notebook (no license), neuroblox/neuroblox.jl (other)

Status: code verified, 5 files readable, 2 matches

[9280] doi:10.1038/s41467-025-67259-6 [paper, repository]

Multi-omic relay velocity modeling uncovers dynamic chromatin-transcription regulation across cell states.

Journal: Nature communications

Authors' code: AriHong/MoFlow (MIT), Zenodo 17666878 (MIT)

Status: code verified, 34 files readable, 13 matches

[9281] doi:10.1038/s41467-025-67517-7 [paper, repository]

Parallel encoding of speech in human frontal and temporal lobes.

Journal: Nature communications

Authors' code: strfpak.berkeley.edu (no license), ChangLabUcsf/Hullett_2025_Source_Code (Apache-2.0)

Status: code verified, 2 files readable

[9282] doi:10.1038/s41467-025-67941-9 [paper, repository]

Leveraging genomic and transcriptomic data of diverse ancestry to uncover mechanisms of psychiatric risk in the adult and developing brain.

Journal: Nature communications

Authors' code: nievergeltlab/global_ancestry (no license), DaskalakisLab/AncestryTWAS2025 (MIT), Zenodo 17683440 (MIT)

Status: code verified, 44 files readable, 9 matches

[9283] doi:10.1038/s41467-025-68114-4 [paper, repository]

Stress induces oxytocin-Gαi-dependent remodeling of astrocytes to shape neuronal response in the amygdala.

Journal: Nature communications

Authors' code: Team-Charlet/Baudon_et_al (no license), Zenodo 17870954 (CC-BY-4.0)

Status: code verified, 68 files readable, 9 matches

[9284] doi:10.1038/s41593-025-02107-w [paper, repository]

Fractal analysis of brain shape formation predicts age and genetic similarity in human newborns.

Journal: Nature neuroscience

Authors' code: cMadan/prism (BSD-2-Clause), OSF 6jck4 (no license)

Status: code verified, 20 files readable, 7 matches

[9285] doi:10.1038/s41598-025-28244-7 [paper, data]

Epigenetic and transcriptomic alterations precede amyloidosis in the Alzheimer's disease App&lt;sup&gt;NL-G-F&lt;/sup&gt; knock-in mouse model.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9286] doi:10.1038/s41598-025-28942-2 [paper]

Functional near-infrared spectroscopy for the detection of fear using parameterized quantum circuits.

Journal: Scientific reports

Status: code on request

[9287] doi:10.1038/s41598-025-29345-z [paper, repository]

Neurocognitive correlates of spatial thinking mediate the relation between socioeconomic status and STEM achievement.

Journal: Scientific reports

Authors' code: OSF qmv7w (no license)

Status: code verified, 1 file readable, 1 match

[9288] doi:10.1038/s41598-025-30919-0 [paper, data]

An epilepsy prediction and management system based on federated learning combined with hybrid harmony search and mutual information (HAS-MI)-based feature selection approach.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9289] doi:10.1117/1.nph.13.1.015001 [paper, repository]

DL-QC-fNIRS: a deep learning tool for automated quality control in functional near-infrared spectroscopy signals.

Journal: Neurophotonics

Authors' code: zhuofeichen312/DL-QC-fNIRS (no license)

Status: code verified, 19 files readable, 14 matches

[9290] doi:10.1177/13872877251406972 [paper, repository]

Repetitive transcranial magnetic stimulation enhances alpha power in Alzheimer's disease patients.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: embar-/eeglab_darbeliai (GPL-3.0)

Status: code verified, 82 files readable, 1 match

[9291] doi:10.1186/s12904-025-01945-6 [paper, data]

Palliative care in patients with brain metastases from breast cancer: a qualitative descriptive study of attitudes, practices, and barriers.

Journal: BMC palliative care

Status: data only, 1 dataset cited

[9292] doi:10.1186/s12974-025-03675-1 [paper, data]

NKG2D receptor ligands are cell surface biomarkers for injured murine and human nociceptive sensory neurons.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[9293] doi:10.1186/s13054-025-05762-4 [paper, repository]

Longitudinal assessment of automated gray-white matter ratio for outcome prediction after cardiac arrest.

Journal: Critical care (London, England)

Authors' code: OSF 283yz (no license)

Status: code verified, 9 files readable, 3 matches

[9294] doi:10.1186/s13104-025-07561-0 [paper, repository]

Data of the study: De Novo genome assembly, annotation, and characterization of chemosensory genes in the camel ked (Hippobosca camelina).

Journal: BMC research notes

Authors' code: figshare 29135213 (CC-BY-4.0)

Status: empty repository

[9295] doi:10.1186/s13195-025-01903-7 [paper, repository]

DNA methylation signatures of Life's Essential 8 and their implications for dementia.

Journal: Alzheimer's research & therapy

Authors' code: TransBioInfoLab/DNAm-and-LE8 (MIT)

Status: code verified, 28 files readable, 6 matches

[9296] doi:10.1371/journal.pcbi.1013818 [paper, repository]

A data-driven biology-based network model reproduces C. elegans premotor neural dynamics.

Journal: PLoS computational biology

Authors' code: mmtree/Celegans_premotor (MIT)

Status: code verified, 18 files readable, 4 matches

[9297] doi:10.1371/journal.pcbi.1013838 [paper, repository]

Ion dynamics underlying the seizure delay effect of low-frequency electrical stimulation.

Journal: PLoS computational biology

Authors' code: GuillaumeGirier/Low-Frequency-Electrical-Stimulation-and-Seizure-Delay (gnu), OSF 8j49w (no license)

Status: code verified, 8 files readable, 4 matches

[9298] doi:10.1371/journal.pgen.1012007 [paper, data]

LINE-1 retrotransposition in a mouse TDP-43 model of neurodegeneration marks motor cortex neurons for cell-intrinsic and cell non-autonomous programmed cell death.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[9299] doi:10.1371/journal.pone.0312637 [paper, data]

Background optic flow modulates responses of multiple descending interneurons to object motion in locusts.

Journal: PloS one

Status: data only, 1 dataset cited

[9300] doi:10.3390/biology15010062 [paper, data]

LazyNet: Interpretable ODE Modeling of Sparse CRISPR Single-Cell Screens Reveals New Biological Insights.

Journal: Biology

Status: data only, 1 dataset cited

[9301] doi:10.3390/brainsci16010044 [paper, data]

Methods of Computational Modelling in Studies of Transcranial Direct Current Stimulation (tDCS) in Adults to Inform Protocols for Tinnitus Treatment: A Scoping Review.

Journal: Brain sciences

Status: data only, 1 dataset cited

[9302] doi:10.3390/brainsci16010047 [paper, repository]

The Effects of Varying Intensities of Unilateral Handgrip Fatigue on Bilateral Movement.

Journal: Brain sciences

Authors' code: cathazi/task-Fatigue (other), cathazi/Knorz_2025_Fatigue (other)

Status: code verified, 22 files readable, 1 match

[9303] doi:10.3390/mi17010044 [paper, data]

A Hardware-Friendly Joint Denoising and Demosaicing System Based on Efficient FPGA Implementation.

Journal: Micromachines

Status: data only, 1 dataset cited

[9304] doi:10.3390/s26010211 [paper, repository]

Task-Dependent Cortical Oscillatory Dynamics in Functional Constipation.

Journal: Sensors (Basel, Switzerland)

Authors' code: yinawei-lab/Constipation-EEG-analysis (no license)

Status: code verified, 4 files readable, 4 matches

[9305] doi:10.3390/s26010227 [paper, data]

Gaussian Connectivity-Driven EEG Imaging for Deep Learning-Based Motor Imagery Classification.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[9306] doi:10.55730/1300-0152.2791 [paper, data]

Transcriptomic identification and developmental mapping of &lt;i&gt;nrg3b&lt;/i&gt; expression in zebrafish.

Journal: Turkish journal of biology = Turk biyoloji dergisi

Status: data only, 1 dataset cited

[9307] doi:10.7554/elife.100129 [paper, repository]

Dual-modal metabolic analysis reveals hypothermia-reversible uncoupling of oxidative phosphorylation in neonatal brain hypoxia-ischemia.

Journal: eLife

Authors' code: HuLab-WashU/PAM-Otsu-Segmentation (MIT)

Status: code verified, 3 files readable

[9308] doi:10.7554/elife.105465 [paper, repository]

DANCE provides an open-source and low-cost approach to quantify aggression and courtship in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: eLife

Authors' code: agrawallab/DANCE (MIT)

Status: code verified, 19 files readable

[9309] doi:10.7554/elife.107138 [paper, repository]

Morphogenesis and morphometry of brain folding patterns across species.

Journal: eLife

Authors' code: yinsifan0204/comparative-brain-morphologies (MIT)

Status: code verified, 36 files readable, 8 matches

[9310] doi:10.7554/elife.107141 [paper, repository]

Biophysical basis for brain folding and misfolding patterns in ferrets and humans.

Journal: eLife

Authors' code: garyptchoi/ferret-brain-morphogenesis (Apache-2.0)

Status: code verified, 32 files readable, 4 matches

Sunday, 28 December 2025 (7 papers)

[9311] doi:10.1002/mrm.70228 [paper, repository]

Informed Dictionary-Guided Monte Carlo Inversion for Robust and Reproducible Multidimensional MRI.

Journal: Magnetic resonance in medicine

Authors' code: jan-martin-mri/md-dmri (other), dan-benjamini/mdmri-idmc (no license), markus-nilsson/md-dmri (other)

Status: code verified, 1,274 files readable, 5 matches

[9312] doi:10.1007/s11263-025-02679-x [paper, repository]

FourierMIL: Fourier Filtering-based Multiple Instance Learning for Whole Slide Image Analysis.

Journal: International journal of computer vision

Authors' code: vkola-lab/ijcv2025 (MIT)

Status: code verified, 34 files readable, 2 matches

[9313] doi:10.1016/j.apsb.2025.12.035 [paper, repository]

Deep learning-driven discovery and mechanism of action study of a minimalist conopeptide targeting &lt;i&gt;α&lt;/i&gt;7 nicotinic acetylcholine receptor.

Journal: Acta pharmaceutica Sinica. B

Authors' code: gc-js/ConotoxinFinder (no license)

Status: code verified, 6 files readable, 2 matches

[9314] doi:10.1016/j.jare.2025.12.047 [paper, repository]

Spatial radiomics-based interpretable multimodal machine learning model enhances outcomes prediction for minor stroke: A multicenter cohort study.

Journal: Journal of advanced research

Authors' code: JLhos-fmri/ClinicalFrequencyAnalysisToolkit (GPL-3.0)

Status: code verified, 24 files readable

[9315] doi:10.1038/s42003-025-09408-7 [paper, data]

Hippocampal-prefrontal connectivity relates to inter-individual differences and training gains in distinguishing similar memories.

Journal: Communications biology

Status: data only, 1 dataset cited

[9316] doi:10.1186/s13195-025-01944-y [paper, repository]

Exploring cellular heterogeneity: single-cell and spatial transcriptomics of Alzheimer's disease brains and iPSC-derived microglia.

Journal: Alzheimer's research & therapy

Authors' code: HarariLab/Integration_work (no license)

Status: code verified, 12 files readable, 10 matches

[9317] doi:10.3390/jcm15010238 [paper]

Prognostic Value of Serum S100B Protein for Neurological Outcomes After Cardiac Arrest: A Systematic Review and Meta-Analysis.

Journal: Journal of clinical medicine

Status: code on request

Saturday, 27 December 2025 (15 papers)

[9318] doi:10.1007/s00018-025-05959-4 [paper]

Identification of epileptic hippocampal sclerosis related genes through bulk and single-nucleus RNA sequencing datasets.

Journal: Cellular and molecular life sciences : CMLS

Status: code on request

[9319] doi:10.1016/j.celrep.2025.116747 [paper]

Adult leptomeningeal vestigial neural crest-derived multipotent cells promote vascular repair after stroke.

Journal: Cell reports

Status: code on request

[9320] doi:10.1016/j.xpro.2025.104277 [paper, data]

Protocol to evaluate mouse brain spatial cell type-resolved transcriptomic discoveries using 10× Visium spatial transcriptomics and FLEX scRNA-seq.

Journal: STAR protocols

Status: code on request, 1 dataset cited

[9321] doi:10.1038/s41467-025-67820-3 [paper, repository]

Circumferential actomyosin bundles anchored by CCM1 drive endothelial cell contraction and vessel constriction.

Journal: Nature communications

Authors' code: dougkelly88/vessel_cell_shape_analysis (GPL-3.0), yanc0913/CircActin (MIT), Zenodo 17731322 (MIT)

Status: code verified, 24 files readable

[9322] doi:10.1038/s41467-025-68010-x [paper, repository]

High-fat diet disrupts a septal control on feeding to promote obesity in male mice.

Journal: Nature communications

Authors' code: ZhuLab-SZ/Jiang_et_al_2025 (no license)

Status: code verified, 3 files readable, 3 matches

[9323] doi:10.1038/s41597-025-06474-8 [paper, repository]

Fatigue Characterization Multimodal Datasets for Stereo Vision in Mixed Reality.

Journal: Scientific data

Authors' code: taochunguang2022/mixed_reality_stereo_vision_model (no license), taochunguang2022/mixed_reality_stereo_vision (no license)

Status: code verified, 59 files readable, 3 matches

[9324] doi:10.1038/s41598-025-28513-5 [paper, data]

RETRACTED ARTICLE: Real-time monitoring system for early stroke detection based on fog computing and enhanced deep learning techniques.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9325] doi:10.1038/s41598-025-33030-6 [paper, repository]

Coupling between neural oscillations and white matter integrity reveals cognitive computational profiles following COVID-19.

Journal: Scientific reports

Authors' code: pbilleke/Kausell_FigueroaVargas_neuroCOVID (no license)

Status: code verified, 19 files readable

[9326] doi:10.1038/s42003-025-09411-y [paper, repository]

Structured interconnectivity optimizes neural geometry for balancing specificity and generalization in object recognition.

Journal: Communications biology

Authors' code: sdgds/Balanced-ITC (no license)

Status: code verified, 4 files readable, 2 matches

[9327] doi:10.1093/nc/niaf061 [paper, repository]

Functional connectivity drifts during sleep as a marker of fluctuations in the level of consciousness.

Journal: Neuroscience of consciousness

Authors' code: joaohnp/FC_Consciousness (MIT)

Status: code verified, 59 files readable, 3 matches

[9328] doi:10.1093/sleepadvances/zpaf094 [paper, data]

&lt;i&gt;Wearanize+&lt;/i&gt;: a multimodal dataset for evaluating wearable technologies in sleep research.

Journal: Sleep advances : a journal of the Sleep Research Society

Status: data only, 3 datasets cited

[9329] doi:10.1186/s12974-025-03659-1 [paper, data]

Microglial interferon signaling and Aβ plaque pathology are enhanced in female 5xFAD Alzheimer's disease mice, independent of estrous cycle stage.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[9330] doi:10.1186/s40708-025-00289-4 [paper]

Machine learning with multitype functional connectivity uncovers whole-brain network disruption in primary angle-closure glaucoma.

Journal: Brain informatics

Status: code on request

[9331] doi:10.3390/brainsci16010037 [paper, data]

A Multi-Task EfficientNetV2S Approach with Hierarchical Hybrid Attention for MRI Enhancing Brain Tumor Segmentation and Classification.

Journal: Brain sciences

Status: data only, 1 dataset cited

[9332] doi:10.3390/ijms27010295 [paper, repository]

Biologically Informed Machine Learning Prioritizes Dietary Supplements That Protect Neural Crest Cells from Ethanol-Induced Epigenetic Dysregulation and Developmental Impairment.

Journal: International journal of molecular sciences

Authors' code: Shawn-UL/Epi_ML_FASD_XW (no license)

Status: code verified, 1 file readable

Friday, 26 December 2025 (25 papers)

[9333] doi:10.1016/j.isci.2025.114544 [paper]

CK1δ-dependent SNAPIN dysregulation drives lysosomal failure in HIV-1 Vpr-exposed neurons: A targetable mechanism in HAND.

Journal: iScience

Status: code on request

[9334] doi:10.1016/j.omta.2025.201658 [paper]

Sinbaglustat is efficacious in GM2 gangliosidosis primarily through inhibition of GBA2 rather than GCS.

Journal: Molecular therapy. Advances

Status: code on request

[9335] doi:10.1016/j.omta.2025.201661 [paper]

Development of a secretable frataxin for enhanced efficacy in treating Friedreich's Ataxia.

Journal: Molecular therapy. Advances

Status: code on request

[9336] doi:10.1038/s41467-025-66666-z [paper, repository]

Backpropagation through space, time and the brain.

Journal: Nature communications

Authors' code: greydanus/mnist1d (Apache-2.0), neurobench/neurobench (Apache-2.0), unibe-cns/gle-code (GPL-3.0)

Status: code verified, 170 files readable, 7 matches

[9337] doi:10.1038/s41467-025-67740-2 [paper, repository]

Human cortical dynamics reflect graded contributions of local geometry and network topography.

Journal: Nature communications

Authors' code: royj23/ieeg_gradients (Apache-2.0), MICA-MNI/micapipe (GPL-3.0), MICA-MNI/BrainSpace (BSD-3-Clause), StuartJO/plotSurfaceROIBoundary (GPL-3.0)

Status: code verified, 162 files readable, 10 matches

[9338] doi:10.1038/s41531-025-01227-1 [paper]

MRI-derived atrophy in multiple system atrophy aligns with mitochondrial and glial gene expression patterns.

Journal: NPJ Parkinson's disease

Status: code on request

[9339] doi:10.1038/s41598-025-31224-6 [paper, repository]

Proteomic profiling reveals age-related changes in transporter proteins in the human blood-brain barrier.

Journal: Scientific reports

Authors' code: xujia0525/BBB_proteomic_analysis (no license), Zenodo 15732703 (CC-BY-4.0)

Status: code verified, 3 files readable, 6 matches

[9340] doi:10.1038/s41598-025-31693-9 [paper, repository]

Fusion of clinical magnet resonance images and electronic health records promotes multimodal predictions of postoperative delirium.

Journal: Scientific reports

Authors' code: ngiesa/fusion_pod](https: (no license)

Status: dead link

[9341] doi:10.1038/s41598-025-33058-8 [paper, data]

Enhancing peak demand forecasting with adaptive FastICA-transformer and entropy-based model customization.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9342] doi:10.1038/s42003-025-09398-6 [paper, repository]

Anterior-posterior patterning in the chaetognath Spadella cephaloptera informs bilaterian nervous system and tail evolution.

Journal: Communications biology

Authors' code: Zenodo 7602960 (CC-BY-4.0), jfordonez/ChaetognathAPPatterning (no license)

Status: code verified, 5 files readable

[9343] doi:10.1038/s42003-025-09402-z [paper, data]

Ventral subicular pyramidal neurons contribute to epileptogenesis via anterior thalamic circuit.

Journal: Communications biology

Status: data only, 1 dataset cited

[9344] doi:10.1073/pnas.2515449122 [paper, repository]

A complete spatial map of mouse retinal ganglion cells reveals density and gene expression specializations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: sbudoff/MappingAllMurineRGCs (no license)

Status: code verified, 40 files readable, 14 matches

[9345] doi:10.1093/evlett/qraf050 [paper, repository]

Neural crest cell biology shapes lizard skull evolution across evolutionary time scales.

Journal: Evolution letters

Authors' code: Zenodo 15855204 (CC-BY-4.0)

Status: code verified

[9346] doi:10.1093/nc/niaf060 [paper, data]

Psilocybin-induced modulation of visual salience processing.

Journal: Neuroscience of consciousness

Status: data only, 1 dataset cited

[9347] doi:10.1186/s12880-025-02116-y [paper, repository]

LoRA-based methods on Unet for transfer learning in aneurysmal subarachnoid hematoma segmentation.

Journal: BMC medical imaging

Authors' code: Minoch/LoRA-based-methods-SAH-segmentation (no license)

Status: code verified, 38 files readable, 4 matches

[9348] doi:10.1186/s12885-025-15487-w [paper, data]

Real-world effectiveness and prognostic factors of platinum rechallenge in advanced urothelial cancer.

Journal: BMC cancer

Status: data only, 1 dataset cited

[9349] doi:10.1186/s12888-025-07724-0 [paper, repository]

Shared but distinct functional connectome profiles underlying rumination in depressed and healthy individuals.

Journal: BMC psychiatry

Authors' code: XiaoChenPhD/rum_network_stable (no license), OSF wts7f (no license)

Status: code verified, 11 files readable, 3 matches

[9350] doi:10.1212/wnl.0000000000214448 [paper, repository]

Whole-Brain Dynamic Causal Tractography Atlas of Auditory and Visual Speech Networks Derived From Intracranial Neurophysiologic Data.

Journal: Neurology

Authors' code: rkwsu/project_auditory_picture (no license)

Status: code verified, 14 files readable

[9351] doi:10.1371/journal.pcbi.1013778 [paper, repository]

Modeling based insights into mechanical dysfunction in esophageal motility disorders.

Journal: PLoS computational biology

Authors' code: elishaguy/esophagus-neuromech (no license)

Status: code verified, 4 files readable, 4 matches

[9352] doi:10.1371/journal.pone.0324689 [paper, repository]

Single-cell alternative polyadenylation analysis reveals mechanistic insights of COVID-19-associated neurological and psychiatric effects.

Journal: PloS one

Authors' code: yinggu94/APA (no license)

Status: code verified, 8 files readable, 6 matches

[9353] doi:10.1371/journal.pone.0335276 [paper, data]

Self-reflection, sense of agency, and underlying neural correlates: A pilot study.

Journal: PloS one

Status: data only, 1 dataset cited

[9354] doi:10.1371/journal.pone.0337458 [paper, repository]

AI based comparison of prefrontal cortex activity between piano-majors and non-piano-major musicians during score-based playing and Motif-improvisation.

Journal: PloS one

Authors' code: KmPark88/PianoPlaying (no license)

Status: empty repository, 1 file readable

[9355] doi:10.1523/eneuro.0252-24.2025 [paper, repository]

RealtimeDecoder: A Fast Software Module for Online Clusterless Decoding.

Journal: eNeuro

Authors' code: LorenFranklab/realtime_decoder (no license), LorenFrankLab/realtime (no license)

Status: code verified, 22 files readable, 20 matches

[9356] doi:10.3390/bioengineering13010029 [paper, repository]

EED-CL: Extended EEG Deformer with Contrastive Learning for Robust Emotion Recognition.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: JaeyoungShin/simultaneous_EEG-NIRS (MIT)

Status: code verified, 19 files readable

[9357] doi:10.3390/tomography12010004 [paper, data]

Detection and Classification of Alzheimer's Disease Using Deep and Machine Learning.

Journal: Tomography (Ann Arbor, Mich.)

Status: data only, 2 datasets cited

Thursday, 25 December 2025 (11 papers)

[9358] doi:10.1002/advs.202515675 [paper, repository]

Mendelian Randomization and Double Machine Learning Modeling Reveal Brain Imaging-Derived Phenotypes as Functional Contributors to 18 Autoimmune Inflammatory Diseases.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: MRCIEU/TwoSampleMR (other), cran/MendelianRandomization (no license), DoubleML/doubleml-for-py (BSD-3-Clause)

Status: code verified, 482 files readable, 16 matches

[9359] doi:10.1016/j.nicl.2025.103938 [paper, repository]

Fetal functional connectivity prospectively associates with autistic traits in toddlerhood.

Journal: NeuroImage. Clinical

Authors' code: Zenodo 14051966 (CC-BY-4.0)

Status: code verified

[9360] doi:10.1038/s41598-025-30401-x [paper, repository]

Explainable machine learning identifies immune-inflammatory biomarkers and therapeutic candidates in drug-resistant epilepsy.

Journal: Scientific reports

Authors' code: tayyab-ijaz/epilepsybiomarkerdrugs](https: (no license)

Status: dead link

[9361] doi:10.1038/s41598-025-32991-y [paper, data]

Deep learning-based joint analysis of diabetic retinopathy and glaucoma in retinal fundus images.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9362] doi:10.1080/29933935.2025.2605879 [paper, data]

Obesity-associated gut microbiome influences diet-induced metabolic and cognitive outcomes in older adults.

Journal: Gut microbes reports

Status: data only, 1 dataset cited

[9363] doi:10.1136/bmjopen-2025-105319 [paper, repository]

Time-weighted mean arterial pressure and pump flow during cardiopulmonary bypass in adults and its effects on neurological outcome parameters: a retrospective study protocol.

Journal: BMJ open

Authors' code: UniGrazMath/vitabel (MIT)

Status: code verified, 24 files readable

[9364] doi:10.1186/s10194-025-02254-2 [paper, data]

Cerebellar neurocan gene expression is a common pathogenic factor of trigeminal neuralgia and depression.

Journal: The journal of headache and pain

Status: data only, 2 datasets cited

[9365] doi:10.3390/brainsci16010031 [paper, data]

Epigenetic Signatures in an Italian Cohort of Parkinson's Disease Patients from Sicily.

Journal: Brain sciences

Status: data only, 1 dataset cited

[9366] doi:10.3390/genes17010015 [paper, data]

Transcriptome Profiling of the Anterior Cingulate Cortex in a CFA-Induced Inflammatory Pain Model Identifies ECM-Related Genes in a Model of Rheumatoid Arthritis.

Journal: Genes

Status: data only, 1 dataset cited

[9367] doi:10.64898/2025.12.23.696162 [paper, repository]

Multi-fiber array-based photometry system for multi-regional functional mapping in the mouse brain

Journal: bioRxiv (preprint)

Authors' code: Sakata-Lab/mfaCTpy (GPL-3.0), Sakata-Lab/MFA (GPL-3.0)

Status: code verified, 15 files readable

[9368] doi:10.64898/2025.12.25.696495 [paper, repository]

A meningeal circadian clock and brain state co-ordinately enhance macromolecular clearance during wake

Journal: bioRxiv (preprint)

Authors' code: JRihel/muLEC-Circadian-Imaging (CC0-1.0)

Status: code verified, 3 files readable

Wednesday, 24 December 2025 (30 papers)

[9369] doi:10.1002/advs.202506747 [paper, repository]

Reliable AI Platform for Monitoring BCI Caused Brain Injury and Providing Real-Time Protection.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Mobina-Zibandepour/Brain-3D-Cad-Model (MIT)

Status: code verified, 2 files readable

[9370] doi:10.1007/s00421-025-06100-w [paper, repository]

Peer-reviewed by human experts: AI failed in key steps to generate a scoping review on the neural mechanisms of cross-education.

Journal: European journal of applied physiology

Authors' code: gemini.google.com (no license)

Status: code verified

[9371] doi:10.1007/s00439-025-02796-0 [paper, repository]

Whole-exome sequencing in children with dyslexia implicates rare variants in CLDN3 and ion channel genes.

Journal: Human genetics

Authors' code: kmarianski/dyslexiawes_cldn3](https: (no license)

Status: dead link

[9372] doi:10.1016/j.celrep.2025.116764 [paper, repository]

Asynchronous firing and off states in working memory maintenance.

Journal: Cell reports

Authors' code: Zenodo 17662560 (CC-BY-4.0)

Status: code verified

[9373] doi:10.1016/j.isci.2025.114531 [paper]

Mesoscopic analysis of GABAergic marker expression in acetylcholine neurons in the whole mouse brain.

Journal: iScience

Status: code on request

[9374] doi:10.1038/s41380-025-03385-3 [paper, repository]

Endogenous opioid system modulates proximal and distal threat signals in the human brain.

Journal: Molecular psychiatry

Authors' code: tkkarjal/magia (MIT)

Status: code verified, 172 files readable, 4 matches

[9375] doi:10.1038/s41392-025-02514-2 [paper, data]

Lipocalin-2 drives brain metastatic progression through reciprocal tumor-microenvironment interactions in lung cancer.

Journal: Signal transduction and targeted therapy

Status: data only, 1 dataset cited

[9376] doi:10.1038/s41467-025-67578-8 [paper, repository]

Genetic Insights into Head-to-Body Ratios Via Deep Learning-Based Image Segmentation and Implications for Common Diseases.

Journal: Nature communications

Authors' code: weishaoxia/head-body-ratio (no license), Zenodo 17422184 (CC-BY-4.0)

Status: code verified, 11 files readable, 11 matches

[9377] doi:10.1038/s41565-025-02080-2 [paper, data]

Machine perception liquid biopsy identifies brain tumours via systemic immune and tumour microenvironment signature.

Journal: Nature nanotechnology

Status: data only, 92 datasets cited

[9378] doi:10.1038/s41597-025-06466-8 [paper, repository]

An EEG Dataset for Multimodal Semantic Alignment and Neural Decoding during Reading and Listening.

Journal: Scientific data

Authors' code: ncclab-sustech/ChineseEEG-2 (no license)

Status: code verified, 13 files readable, 12 matches

[9379] doi:10.1038/s41598-025-31624-8 [paper, data]

Macretina: a dataset, to support deep learning assisted retinopathy of prematurity diagnosis.

Journal: Scientific reports

Status: data only, 2 datasets cited

[9380] doi:10.1038/s41598-025-32811-3 [paper, repository]

Obstructive sleep apnea increases heartbeat-evoked potentials and reorganizes Granger-causal coupling between cortical interoception and autonomic variability during wakefulness.

Journal: Scientific reports

Authors' code: mahsaalidadi/NeuroHEP (MIT)

Status: code verified, 7 files readable, 2 matches

[9381] doi:10.1038/s41598-025-33041-3 [paper]

Transcriptomic signatures in brain and blood related to cognitive and psychiatric phenotypes of Prader-Willi syndrome.

Journal: Scientific reports

Status: data only

[9382] doi:10.1038/s41598-025-33104-5 [paper, data]

Influence of ApoE genotype on doxorubicin-induced cognitive impairment in juvenile rats.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9383] doi:10.1038/s41598-025-33589-0 [paper, data]

Comparison of multi-miRNA models from donor-matched plasma and cerebrospinal fluid as candidate biomarkers for Alzheimer's disease prediction.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9384] doi:10.1038/s42003-025-09382-0 [paper, repository]

Neuronal mismatch responses to auditory stimuli in the dorsal hippocampus of anesthetized rats.

Journal: Communications biology

Authors' code: Canelab-USAL/Neuronal-Mismatch-Responses_to_Auditory_Stimuli_in_the_Dorsal_Hippocampus_of_Anesthetized_Rats (GPL-3.0), Zenodo 17789144 (CC-BY-4.0)

Status: code verified, 150 files readable, 2 matches

[9385] doi:10.1038/s42003-025-09397-7 [paper, repository]

Transcriptomic decoding of regional cortical vulnerability to drug-resistant epilepsy using 7T MRI.

Journal: Communications biology

Authors' code: OSF 6sgwv (no license)

Status: code verified, 54 files readable, 3 matches

[9386] doi:10.1038/s42003-025-09399-5 [paper, repository]

Implicit neural representations for accurate estimation of the Standard Model of white matter.

Journal: Communications biology

Authors' code: Zenodo 17092773 (CC-BY-4.0), tomhend/Standard_model_INR (GPL-3.0)

Status: code verified, 15 files readable, 2 matches

[9387] doi:10.1038/s43856-025-01313-8 [paper, data]

Sparse machine learning of resting-state fMRI reveals brain-wide dysconnectivity in hyperacusis.

Journal: Communications medicine

Status: data only, 1 dataset cited

[9388] doi:10.1073/pnas.2514202122 [paper, repository]

Synchrony of neuromodulatory systems during NREM sleep.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: thepenglab/TDTEEG (MIT)

Status: code verified, 94 files readable, 6 matches

[9389] doi:10.1073/pnas.2520444122 [paper, repository]

Conjunctive population coding integrates sensory evidence to guide adaptive behavior.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: JTerlau/contextA (no license)

Status: code verified, 8 files readable, 2 matches

[9390] doi:10.1080/19490976.2025.2601430 [paper, data]

Antigen-specific activation of gut immune cells drives autoimmune neuroinflammation.

Journal: Gut microbes

Status: data only, 2 datasets cited

[9391] doi:10.1088/1741-2552/ae2715 [paper, repository]

Medtronic Percept™ recorded LFP pre-processing to remove noise and cardiac signals from neural recordings.

Journal: Journal of neural engineering

Authors' code: sange019/Percept-Analysis (CC0-1.0)

Status: code verified, 6 files readable, 8 matches

[9392] doi:10.1159/000550231 [paper, data]

Investigating Alzheimer's Disease Progression Using a Radiomics Approach: The Hippocampal-Amygdala Border in FDG-Positron Emission Tomography Scans.

Journal: Neuro-degenerative diseases

Status: data only, 1 dataset cited

[9393] doi:10.1186/s40001-025-03477-4 [paper, repository]

Identification of coagulation-related hub genes in ischemic stroke based on bioinformatics integration analysis and investigation of their immune regulatory mechanisms.

Journal: European journal of medical research

Authors' code: mdbrown/rmda (no license), grst/immunedeconv (GPL-2.0)

Status: code verified, 36 files readable

[9394] doi:10.3389/fnut.2025.1699376 [paper, repository]

Excess prenatal folic acid supplementation alters cortical DNA methylation and gene expression networks.

Journal: Frontiers in nutrition

Authors' code: vhaghani26/Mouse_FAE_RNAseq_WGBS (MIT), vhaghani26/epigenerator (MIT)

Status: code verified, 20 files readable, 13 matches

[9395] doi:10.3390/jcm15010140 [paper, repository]

Auditory Discrimination of Parametrically Sonified EEG Signals in Alzheimer's Disease.

Journal: Journal of clinical medicine

Authors' code: Zenodo 17571308 (CC-BY-4.0)

Status: code verified

[9396] doi:10.64898/2025.12.22.695917 [paper, repository]

10.5 Tesla High-Resolution Macaque Brain MRI for In vivo and Ex vivo Connectivity Studies

Journal: bioRxiv (preprint)

Authors' code: SPMIC-UoN/CMC_invivo_dMRI_pipeline (GPL-3.0), SPMIC-UoN/CMC_exvivo_dMRI_pipeline (GPL-3.0), SPMIC-UoN/EDDEN (no license), SPMIC-UoN/cudimot (other), jdtournier/mrdegibbs3D (no license)

Status: code verified, 266 files readable, 6 matches

[9397] doi:10.64898/2025.12.22.695942 [paper, repository]

Open-access template and database approaches for pseudo-CT generation in brain PET/MRI attenuation correction

Journal: bioRxiv (preprint)

Authors' code: NeuroimagingLabsMUV/Milz_2025_pseudoCT (GPL-2.0)

Status: code verified, 3 files readable

[9398] doi:10.7554/elife.92443 [paper, repository]

Projection-specific integration of convergent thalamic and retrosplenial signals in the presubicular head direction cortex.

Journal: eLife

Authors' code: schoki0710/Intrinsic_Properties (no license)

Status: code verified, 17 files readable

Tuesday, 23 December 2025 (49 papers, 10 on this page)

[9399] doi:10.1007/s00221-025-07219-0 [paper, data]

ERP evidence of attentional selection outside of effective oculomotor range.

Journal: Experimental brain research

Status: data only, 1 dataset cited

[9400] doi:10.1007/s12035-025-05627-5 [paper, data]

Tetrahydrocurcumin for Major Depressive Disorder with Therapeutic Potential and Mechanistic Insights from Clinical and Preclinical Studies.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[9401] doi:10.1016/j.ajhg.2025.12.002 [paper, repository]

MSH3 is a genetic modifier of somatic repeat instability in X-linked dystonia parkinsonism.

Journal: American journal of human genetics

Authors' code: alanmejiamaza/Counting-Repeats (no license), alanmejiamaza/RNA-seq-analyses (no license)

Status: code verified, 7 files readable, 1 match

[9402] doi:10.1016/j.bpsgos.2025.100683 [paper, repository]

Rare Variants in Antisense Long Noncoding RNA-Protein-Coding Gene Overlap Regions Contribute to Obsessive-Compulsive Disorder.

Journal: Biological psychiatry global open science

Authors' code: MahjaniLab/OCD_WGS_lncRNA (no license)

Status: code verified, 7 files readable, 7 matches

[9403] doi:10.1016/j.conctc.2025.101591 [paper, repository]

A mechanistic trial of the neurobiology of extinction learning and intraparietal sulcus stimulation: Protocol.

Journal: Contemporary clinical trials communications

Authors' code: balders2/analyze_startle (GPL-3.0)

Status: code verified, 6 files readable

[9404] doi:10.1016/j.dcn.2025.101664 [paper, repository]

Neurodevelopmental correlates of emotion regulation in adolescence: An accelerated longitudinal study.

Journal: Developmental cognitive neuroscience

Authors' code: braveresearchcenter/ceda (no license), OSF yqpjz (no license)

Status: code verified, 6 files readable, 8 matches

[9405] doi:10.1016/j.ebiom.2025.106090 [paper, repository]

Brain atrophy staging in spinocerebellar ataxia type 3 for clinical prognosis and trial enrichment.

Journal: EBioMedicine

Authors' code: ucl-pond/pySuStaIn (MIT)

Status: code verified, 19 files readable

[9406] doi:10.1016/j.isci.2025.114520 [paper]

Widely targeted metabolomics and machine learning identify succinate as a key metabolite in sepsis-associated encephalopathy.

Journal: iScience

Status: code on request

[9407] doi:10.1016/j.isci.2025.114521 [paper, data]

A general model based on Riemannian manifold for stable decoding movement trajectory from ECoG signals.

Journal: iScience

Status: data only, 2 datasets cited

[9408] doi:10.1016/j.isci.2025.114523 [paper, data]

The basal ganglia mediate the inter-hemispheric transfer of complex tool-use skill.

Journal: iScience

Status: code on request, 1 dataset cited

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