Every paper, by date: page 43

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 43 of 200: 23 December 2025 to 17 December 2025.

Tuesday, 23 December 2025 (49 papers, 39 on this page)

[9409] doi:10.1016/j.neuroimage.2025.121676 [paper, repository]

Assessing chance in neuro-vascular interactions.

Journal: NeuroImage

Authors' code: eddoubov/AssessingChanceinNeuroVascularInteractions (no license)

Status: code verified, 4 files readable, 2 matches

[9410] doi:10.1016/j.neuroimage.2025.121677 [paper, repository]

A practical preprocessing pipeline for concurrent TMS-iEEG: Critical steps and methodological considerations.

Journal: NeuroImage

Authors' code: JingJiangLab/Parietal-Hippocampus (no license)

Status: code verified, 65 files readable, 3 matches

[9411] doi:10.1038/s41423-025-01360-0 [paper]

C/EBPβ-induced alternative splicing of RCAN1 generates a potent TCR-T target in mesenchymal glioblastoma.

Journal: Cellular & molecular immunology

Status: data only

[9412] doi:10.1038/s41467-025-67431-y [paper, repository]

Mapping rare protein-coding variants on multi-organ imaging traits.

Journal: Nature communications

Authors' code: Zenodo 17496486 (CC-BY-4.0), Zenodo 17496459 (CC-BY-4.0)

Status: code verified, 14 files readable

[9413] doi:10.1038/s41467-025-67518-6 [paper, repository]

A flexible photoacoustic retinal prosthesis.

Journal: Nature communications

Authors' code: visual-information-processing-lab/Axorus-NComms (no license)

Status: code verified, 8 files readable, 1 match

[9414] doi:10.1038/s41467-025-67765-7 [paper, repository]

A brain-to-small intestine circuit mediates morphine-induced constipation in male mice.

Journal: Nature communications

Authors' code: mukamel-lab/CellSort (no license), zivlab/CellReg (GPL-2.0)

Status: code verified, 72 files readable, 2 matches

[9415] doi:10.1038/s41531-025-01207-5 [paper, repository]

Muscle bursting and corticomotor excitability mark impaired impulse control in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: OSF 3xwda (no license)

Status: code verified, 25 files readable, 5 matches

[9416] doi:10.1038/s41539-025-00391-6 [paper]

Cardiovascular exercise enhances motor learning across multiple sessions in people with Parkinson's disease: a randomized controlled pilot trial.

Journal: NPJ science of learning

Status: code on request

[9417] doi:10.1038/s41593-025-02152-5 [paper, repository]

Axon initial segment dynamics during associative fear learning.

Journal: Nature neuroscience

Authors' code: Zenodo 17405776 (CC-BY-4.0), Zenodo 17405746 (GPL-3.0), Zenodo 17405745 (GPL-3.0)

Status: code verified, 46 files readable

[9418] doi:10.1038/s41598-025-27825-w [paper, repository]

Pattern and structural detection in grayscale images through the application of quantile graphs in higher-dimensional spaces.

Journal: Scientific reports

Authors' code: zalandoresearch/fashion-mnist (MIT), MarioVicchietti/2D_QGs (no license)

Status: code verified, 17 files readable

[9419] doi:10.1038/s41598-025-30373-y [paper, repository]

Behavioural and electrophysiological correlates of sensory attenuation in the somatosensory and auditory modality within a virtual reality setup.

Journal: Scientific reports

Authors' code: Neurocomputation-and-Neuroimaging-Unit/SensAtt_Aud_Tact_Behav (no license)

Status: code verified, 33 files readable, 1 match

[9420] doi:10.1038/s41598-025-31514-z [paper, data]

BT-11 targets the LANCL2 pathway to attenuate cognitive deficits and hippocampal pathology in Alzheimer's transgenic rats.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9421] doi:10.1038/s41598-025-31700-z [paper, data]

Integral Betti signatures of brain, climate and financial networks compared to hyperbolic, Euclidean and spherical models.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9422] doi:10.1038/s41598-025-33215-z [paper, data]

Brain tumor detection with real-world predictions in Jordan hospitals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9423] doi:10.1038/s41598-025-33479-5 [paper, repository]

Sox11 overexpression restores embryonic pro-growth transcription in mature corticospinal tract neurons.

Journal: Scientific reports

Authors' code: samuel-marsh/scCustomize (GPL-3.0), RegenerationLab/Sox11_CST_Single_Nuc (no license)

Status: code verified, 75 files readable, 18 matches

[9424] doi:10.1038/s42003-025-09354-4 [paper, repository]

Decoding the human brain during intelligence testing.

Journal: Communications biology

Authors' code: jonasAthiele/connectors_intelligence (no license), Zenodo 17623340 (CC-BY-4.0)

Status: code verified, 32 files readable, 6 matches

[9425] doi:10.1038/s42003-025-09391-z [paper, data]

Identification of two odorant receptors tuned to alarm pheromone compounds in the honey bee Apis mellifera.

Journal: Communications biology

Status: data only, 1 dataset cited

[9426] doi:10.1073/pnas.2500226122 [paper, data]

Competition between glycine and GABA<sub>A</sub> receptors for gephyrin controls their equilibrium populations at inhibitory synapses.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[9427] doi:10.1073/pnas.2512604122 [paper, repository]

Neural synchrony links sensorimotor cortices in a network for facial motor control.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 17553151 (CC-BY-4.0), yuvazu/facial-motor-synchrony-code (no license)

Status: code verified, 17 files readable, 6 matches

[9428] doi:10.1073/pnas.2519255122 [paper, data]

Early emergence of perceptual biases in the secondary somatosensory cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[9429] doi:10.1073/pnas.2519994122 [paper, data]

Neural crest cell recruitment and reprogramming as central drivers of embryonic limb regeneration.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[9430] doi:10.1080/13880209.2025.2605571 [paper, data]

The role of salvianolic acid B and benzoylpaeoniflorin in enhancing angiogenesis through Nrf2/HO-1/VEGFA signaling axis in ischemic stroke recovery.

Journal: Pharmaceutical biology

Status: data only, 1 dataset cited

[9431] doi:10.1080/19490976.2025.2604871 [paper]

Integrated multi-omic and symptom clustering reveals lower-gastrointestinal disorders of gut-brain interaction heterogeneity.

Journal: Gut microbes

Status: data only

[9432] doi:10.1080/26941899.2025.2600125 [paper, repository]

A Bayesian Integrative Mixed Modeling Framework for Analysis of the Multi-Site Adolescent Brain and Cognitive Development Study.

Journal: Data science in science

Authors' code: nehera/abcd_multiview (MIT)

Status: code verified, 21 files readable, 9 matches

[9433] doi:10.1093/braincomms/fcaf495 [paper, data]

PET in conjunction with resting-state functional MRI for the study of chronic disorders of consciousness.

Journal: Brain communications

Status: data only, 1 dataset cited

[9434] doi:10.1159/000550235 [paper, data]

Stimulating the Human Olfactory Bulb to Evoke Smell Perception: A Case Report from Awake Brain Surgery.

Journal: ORL; journal for oto-rhino-laryngology and its related specialties

Status: data only, 1 dataset cited

[9435] doi:10.1162/imag.a.1042 [paper, repository]

Towards a 384-channel magnetoencephalography system based on optically pumped magnetometers.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: HollySchofield/Towards-a-384-channel-magnetoencephalography-system-based-on-optically-pumped-magnetometers (no license), Zenodo 17807938 (CC-BY-4.0)

Status: code verified, 12 files readable, 7 matches

[9436] doi:10.1186/s10194-025-02222-w [paper, repository]

From trigeminal ganglion to cortex: ATG7 emerges as a key integrator of migraine pathways via multi-omics profiling.

Journal: The journal of headache and pain

Authors' code: steph730/From-trigeminal-ganglion-to-cortex-ATG7 (Apache-2.0)

Status: code verified, 3 files readable, 2 matches

[9437] doi:10.1186/s12883-025-04583-w [paper, data]

Association between high carbohydrate to dietary fiber ratio and risk of dementia in older adults: analysis from the UK biobank.

Journal: BMC neurology

Status: data only, 1 dataset cited

[9438] doi:10.1186/s12887-025-06321-0 [paper, data]

The association between neurologic pupillary index (NPi) and functional outcomes in critically ill children.

Journal: BMC pediatrics

Status: data only, 1 dataset cited

[9439] doi:10.1186/s12974-025-03593-2 [paper, repository]

A systematic scoring system to optimise the testing of neurotherapeutics in models of perinatal brain injury, with an applied case study of human umbilical-cord MSC.

Journal: Journal of neuroinflammation

Authors' code: INSERM-U1141-Neurodiderot/premstem-scoring (MIT)

Status: code verified, 7 files readable

[9440] doi:10.1186/s13195-025-01945-x [paper, repository]

Retinal microvascular alterations reflect cerebral small vessel disease burden in frontotemporal dementia: a multimodal OCTA-MRI Study.

Journal: Alzheimer's research & therapy

Authors' code: pboutinaud/SHiVAi (AGPL-3.0)

Status: code verified, 69 files readable, 5 matches

[9441] doi:10.1371/journal.pone.0324422 [paper, data]

The use of carbogen for interruption of febrile seizures - the randomized controlled CARDIF trial.

Journal: PloS one

Status: data only, 1 dataset cited

[9442] doi:10.3390/ijms27010167 [paper, repository]

Dynamic Behavioral and Molecular Changes Induced by Chronic Restraint Stress Exposure in Mice.

Journal: International journal of molecular sciences

Authors' code: jaimeknoch/banasr-lab-coexpression-compartment-analysis (no license), Zenodo 17981401 (CC-BY-4.0)

Status: code verified, 34 files readable, 10 matches

[9443] doi:10.3390/tomography12010002 [paper, data]

Altered Functional Connectivity of Amygdala Subregions with Large-Scale Brain Networks in Schizophrenia: A Resting-State fMRI Study.

Journal: Tomography (Ann Arbor, Mich.)

Status: data only, 1 dataset cited

[9444] doi:10.64898/2025.12.21.695778 [paper, repository]

Direction and orientation preferences in mouse superior colliculus and its retinal inputs align with topographic axes atop locally mixed tuning

Journal: bioRxiv (preprint)

Authors' code: Schroeder-Lab/he-et-al_2025_tuning-topography (no license)

Status: code verified, 115 files readable, 31 matches

[9445] doi:10.64898/2025.12.22.695789 [paper, repository]

Optimised fluorescence-activated nuclei sorting for epigenomic analysis of cortical cell types

Journal: bioRxiv (preprint)

Authors' code: ejh243/BrainFANS (Artistic-2.0), dmsoanes/ont-dna-modification (no license)

Status: code verified, 239 files readable, 5 matches

[9446] doi:10.64898/2025.12.22.695858 [paper, repository]

Inhibition of histone lysine demethylase restores learning and memory in aged mice

Journal: bioRxiv (preprint)

Authors' code: lm690/Project_11657 (no license)

Status: empty repository

[9447] doi:10.7554/elife.103324 [paper, repository]

DendroTweaks, an interactive approach for unraveling dendritic dynamics.

Journal: eLife

Authors' code: Poirazi-Lab/DendroTweaks (MPL-2.0), Poirazi-Lab/DendroTweaksApp (MPL-2.0)

Status: code verified, 220 files readable, 15 matches

Monday, 22 December 2025 (54 papers)

[9448] doi:10.1002/advs.202508999 [paper, repository]

Nurr1 Orchestrates Claustrum Development and Functionality.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: ChariteExpMri/antx2 (LGPL-2.1), qoldt/nurr1-snrnaseq (no license)

Status: code verified, 2,002 files readable, 7 matches

[9449] doi:10.1007/s00359-025-01787-w [paper, repository]

The evolution of lepidopteran brain morphology.

Journal: Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology

Authors' code: stanleyheinze/Lepidopteran_brain_evolution (no license)

Status: code verified, 2 files readable, 3 matches

[9450] doi:10.1007/s00415-025-13574-3 [paper]

Uncovering hypothalamic network disruption in ALS.

Journal: Journal of neurology

Status: code on request

[9451] doi:10.1007/s10565-025-10124-5 [paper, data]

DNAH11 impairs memory via disrupted synaptic plasticity in noise-induced hidden hearing loss mice.

Journal: Cell biology and toxicology

Status: data only, 1 dataset cited

[9452] doi:10.1016/j.jbc.2025.111080 [paper, repository]

Discovery of small molecules and a druggable groove that regulate DNA binding and release of the AP-1 transcription factor ΔFOSB.

Journal: The Journal of biological chemistry

Authors' code: shenlab-sinai/NGS-Data-Charmer (no license)

Status: code verified, 6 files readable

[9453] doi:10.1016/j.jbc.2025.111090 [paper, data]

Neurofascin stabilization by contactin-associated protein-like 2 and CTCF alleviates mitochondrial dysfunction in Schwann cells during facial nerve injury.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[9454] doi:10.1016/j.jbc.2025.111097 [paper, data]

The biochemical dynamics of the glycogen phosphatase laforin directly impact brain metabolism.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[9455] doi:10.1016/j.molmet.2025.102313 [paper]

Pancreatic amylin dynamically reconfigures distributed brain networks governing appetite regulation in mice.

Journal: Molecular metabolism

Status: code on request

[9456] doi:10.1016/j.nlm.2025.108128 [paper, data]

Ensembles and engrams in mouse cortical and sub-thalamic brain regions supporting context and memory recall.

Journal: Neurobiology of learning and memory

Status: data only, 1 dataset cited

[9457] doi:10.1016/j.xcrm.2025.102535 [paper, data]

Pharmacologic reversal of advanced Alzheimer's disease in mice and identification of potential therapeutic nodes in human brain.

Journal: Cell reports. Medicine

Status: code on request, 2 datasets cited

[9458] doi:10.1016/j.xpro.2025.104276 [paper]

Protocol to investigate neurophysiological link between resting-state brain activity and clinical symptoms in methamphetamine use disorder.

Journal: STAR protocols

Status: code on request

[9459] doi:10.1038/s41419-025-08206-7 [paper, data]

Capicua regulates the survival of Cajal-Retzius cells in the postnatal hippocampus.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[9460] doi:10.1038/s41467-025-66124-w [paper, repository]

Constructing the human brain metabolic connectome with MR spectroscopic imaging reveals cerebral biochemical organization.

Journal: Nature communications

Authors' code: MRSI-Psychosis-UP/MRSI-Metabolic-Connectome (other), Zenodo 17293201 (CC-BY-4.0)

Status: code verified, 56 files readable, 12 matches

[9461] doi:10.1038/s41467-025-66784-8 [paper, repository]

Latent brain subtypes of chronotype reveal unique behavioral and health profiles across population cohorts.

Journal: Nature communications

Authors' code: MRCIEU/PHESANT (MIT), Zenodo 17524317 (MIT), zoro27/chronotype_subtype (MIT)

Status: code verified, 67 files readable, 11 matches

[9462] doi:10.1038/s41467-025-67715-3 [paper, repository]

Regional activity within the human amygdala varies with season, mood and illuminance.

Journal: Nature communications

Authors' code: gitlab.uliege.be/cyclotronresearchcentre/public/fasst/amygdala_7t_light (no license)

Status: code verified, 12 files readable, 6 matches

[9463] doi:10.1038/s41467-025-67825-y [paper, repository]

Distinct mechanisms of transcriptomic habituation to repeated stress in the mouse hippocampus.

Journal: Nature communications

Authors' code: ETHZ-INS/CRS_habituation (no license), Zenodo 17465182 (CC-BY-4.0)

Status: code verified, 104 files readable, 24 matches

[9464] doi:10.1038/s41467-025-67853-8 [paper, repository]

Active disambiguation guides inferring controllability and cause in social interactions.

Journal: Nature communications

Authors' code: Zenodo 17602027 (Apache-2.0), lisaspiering/cause-controllability (Apache-2.0)

Status: code verified, 26 files readable, 16 matches

[9465] doi:10.1038/s41531-025-01209-3 [paper, data]

Parkinson's disease-associated alterations in DNA methylation and hydroxymethylation in human brain.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[9466] doi:10.1038/s41539-025-00392-5 [paper, repository]

Differential effects of external noise and situational interest on neurophysiological responses during video based learning.

Journal: NPJ science of learning

Authors' code: OSF z5naf (no license)

Status: empty repository

[9467] doi:10.1038/s41593-025-02153-4 [paper, repository]

Extracellular matrix proteolysis maintains synapse plasticity during brain development.

Journal: Nature neuroscience

Authors' code: ChristophKirst/developmental_synapse_remodeling (GPL-3.0)

Status: code verified, 10 files readable, 3 matches

[9468] doi:10.1038/s41598-025-32676-6 [paper, data]

Navitoclax acts synergistically with irradiation to induce apoptosis in preclinical models of H3K27M-altered diffuse midline glioma.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9469] doi:10.1038/s41598-025-33083-7 [paper, repository]

Automated, anatomy-based, heuristic post-processing reduces false positives and improves interpretability of deep learning intracranial aneurysm detection models.

Journal: Scientific reports

Authors' code: kaggle.com/competitions/rsna-intracranial-aneurysm-detection](https: (no license)

Status: dead link

[9470] doi:10.1038/s41598-025-33136-x [paper, data]

A novel sub-differentiable hausdorff loss combined with BCE for MRI brain tumor segmentation using UNet variants.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9471] doi:10.1038/s41598-025-33535-0 [paper, data]

EEG classification for neurological disorders using frequency band deciles.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9472] doi:10.1038/s42003-025-09344-6 [paper, data]

A new system for studying neuronal remodeling and its relation to behavior in Drosophila.

Journal: Communications biology

Status: data only, 1 dataset cited

[9473] doi:10.1038/s42003-025-09366-0 [paper, data]

Longitudinal human transcriptomic and spatial gene profiling at the incisional edge during long surgical procedures.

Journal: Communications biology

Status: data only, 1 dataset cited

[9474] doi:10.1038/s44321-025-00367-4 [paper, repository]

Impaired Complex I dysregulates neural/glial precursors and corpus callosum development revealing postnatal defects in Leigh syndrome mice.

Journal: EMBO molecular medicine

Authors' code: alexdobin/STAR (MIT), Zenodo 15424859 (CC-BY-4.0)

Status: code verified, 340 files readable, 6 matches

[9475] doi:10.1073/pnas.2525146122 [paper, data]

Maladaptive immunity to the microbiota promotes neuronal hyperinnervation and itch via IL-17A.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[9476] doi:10.1073/pnas.2528602122 [paper, repository]

Synaptic integration and competition in the substantia nigra pars reticulata-An experimental and in silico analysis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: wstho/Snudda (GPL-3.0)

Status: code verified, 71 files readable

[9477] doi:10.1080/15592294.2025.2604360 [paper, repository]

A cell type enrichment analysis tool for brain DNA methylation data (CEAM).

Journal: Epigenetics

Authors' code: Dementia-Systems-Biology/CEAM (MIT)

Status: code verified, 18 files readable, 7 matches

[9478] doi:10.1080/19336950.2025.2594893 [paper, data]

<i>Trpv1</i>-dependent <i>Cacna1b</i> gene inactivation reveals cell-specific functions of Ca<sub>V</sub>2.2 channels <i>in vivo</i>.

Journal: Channels (Austin, Tex.)

Status: data only, 1 dataset cited

[9479] doi:10.1111/bpa.70062 [paper, data]

Evidence of emerging transcriptome mediators of Alzheimer's disease in canine cognitive dysfunction.

Journal: Brain pathology (Zurich, Switzerland)

Status: data only, 1 dataset cited

[9480] doi:10.1111/epi.18705 [paper, repository]

Network hubs supporting memory encoding: Implications for cognitive preservation in epilepsy surgery.

Journal: Epilepsia

Authors' code: Zenodo 4030569 (Apache-2.0), icrc-bme/epycom (Apache-2.0)

Status: code verified, 135 files readable, 2 matches

[9481] doi:10.1111/epi.70042 [paper, repository]

Multimodal integration of magnetic resonance imaging and intracranial electroencephalographic abnormalities in temporal lobe epilepsy surgery.

Journal: Epilepsia

Authors' code: cnnp-lab/three-modality (no license)

Status: code verified, 1 file readable, 2 matches

[9482] doi:10.1162/imag.a.1058 [paper, repository]

Axonal structure-function relationships across experimental modalities.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: cskoven/PulsePal (no license), cskoven/opto-elphys (no license), map-science/deepaxonmyelinemsegmenter (Apache-2.0)

Status: code verified, 112 files readable, 6 matches

[9483] doi:10.1186/s13040-025-00506-0 [paper, repository]

Cross-cohort genetic risk prediction for Alzheimer's disease: a transfer learning approach using GWAS and deep learning models.

Journal: BioData mining

Authors' code: isibor-ihianle/AD-Risk-Transfer-Learning (no license)

Status: code verified, 9 files readable, 3 matches

[9484] doi:10.1186/s13244-025-02158-4 [paper, repository]

Skull-stripping induces shortcut learning in MRI-based Alzheimer's disease classification.

Journal: Insights into imaging

Authors' code: christiantinauer/binADNI (no license)

Status: code verified, 94 files readable, 9 matches

[9485] doi:10.1186/s40478-025-02205-7 [paper, data]

Enteric nervous system degeneration in human and murine CLN3 disease, is ameliorated by gene therapy in mice.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[9486] doi:10.1371/journal.pcbi.1013821 [paper, repository]

Neuronal identity is not static: An input-driven perspective.

Journal: PLoS computational biology

Authors' code: Nishant-codex/single_cell_analysis (MIT), DepartmentofNeurophysiology/Analysis-tools-for-electrophysiological-somatosensory-cortex-databank (no license)

Status: code verified, 17 files readable, 4 matches

[9487] doi:10.1371/journal.pone.0323235 [paper]

Effects of combination therapy of a CDK4/6 and MEK inhibitor in diffuse midline glioma preclinical models.

Journal: PloS one

Status: data only

[9488] doi:10.1371/journal.pone.0323398 [paper, repository]

Ratio maps of T1w/T2w MRI signal intensity do not improve deep-learning segmentation of pediatric brain tumors.

Journal: PloS one

Authors' code: mic-dkfz/nnunet (Apache-2.0)

Status: code verified, 237 files readable, 1 match

[9489] doi:10.1523/eneuro.0228-25.2025 [paper, data]

Pairing Mouse Social and Aversive Stimuli across Sexes Does Not Produce Social Aversion in Females.

Journal: eNeuro

Status: data only, 1 dataset cited

[9490] doi:10.3390/brainsci16010009 [paper, repository]

Do We View Robots as We Do Ourselves? Examining Robotic Face Processing Using EEG.

Journal: Brain sciences

Authors' code: rpubs.com/riverula/robot_2023 (no license)

Status: code verified

[9491] doi:10.3390/brainsci16010011 [paper, repository]

Lightweight EEG Phase Prediction Based on Channel Attention and Spatio-Temporal Parallel Processing.

Journal: Brain sciences

Authors' code: BMHLab/TEPs-MEPs (no license)

Status: code verified, 20 files readable, 1 match

[9492] doi:10.3390/ejihpe16010002 [paper, data]

Neuroscientific Framework of Cognitive-Behavioral Interventions for Mental Health Across Diverse Cultural Populations: A Systematic Review of Effectiveness, Delivery Methods, and Engagement.

Journal: European journal of investigation in health, psychology and education

Status: data only, 1 dataset cited

[9493] doi:10.64898/2025.12.18.695184 [paper, repository]

Coevolution of neoplastic and non-neoplastic reactive astrocyte states converges on mesenchymal-like and injury-response programs during murine glioblastoma progression and post-radiotherapy recurrence

Journal: bioRxiv (preprint)

Authors' code: PietrasLab/gbm-rcas-2025-lindgren-rosberg (GPL-3.0)

Status: code verified, 76 files readable, 36 matches

[9494] doi:10.64898/2025.12.19.694963 [paper, repository]

Probabilistic inference of Homonymous and Heteronymous Recurrent Inhibition in Human Muscles from Large-Scale Motor Neuron Recordings

Journal: bioRxiv (preprint)

Authors' code: FrancoisDernoncourt/Mapping_Recurrent_Inhibition (MIT)

Status: code verified, 15 files readable, 25 matches

[9495] doi:10.64898/2025.12.19.695531 [paper, repository]

Lysosomal escape and TMEM106B fibrillar core determine TDP-43 seeding outcomes

Journal: bioRxiv (preprint)

Authors' code: Chocobosaurus/TDPLoF (no license)

Status: code verified, 3 files readable

[9496] doi:10.64898/2025.12.19.695543 [paper, data]

Selective enhancement of fronto-temporal mechanisms for adaptive memory

Journal: bioRxiv (preprint)

Status: code on request, 1 dataset cited

[9497] doi:10.64898/2025.12.19.695643 [paper]

Fast and slow learning mediated by distinct climbing fiber signals

Journal: bioRxiv (preprint)

Status: code on request

[9498] doi:10.7554/elife.105627 [paper, data]

Afadin-deficient mouse retinas exhibit severe neuronal lamination defects but preserve visual functions.

Journal: eLife

Status: data only, 1 dataset cited

[9499] doi:10.7554/elife.109183 [paper, repository]

Cerebellar climbing fibers impact experience-dependent plasticity in the mouse primary somatosensory cortex.

Journal: eLife

Authors' code: abbysilbaugh/climbingfiber (MIT)

Status: code verified, 1,196 files readable, 7 matches

[9500] doi:10.7554/elife.98117 [paper, repository]

Human EEG and artificial neural networks reveal disentangled representations and processing timelines of object real-world size and depth in natural images.

Journal: eLife

Authors' code: ZitongLu1996/RWsize (MIT)

Status: code verified, 26 files readable, 2 matches

[9501] doi:10.7554/elife.98817 [paper, data]

Cone bipolar cell synapses generate transient versus sustained signals in parallel ON pathways of the mouse retina.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 21 December 2025 (15 papers)

[9502] doi:10.1016/j.celrep.2025.116756 [paper]

Targeted gene transfer into developmentally defined cell populations of the primate brain.

Journal: Cell reports

Status: code on request

[9503] doi:10.1016/j.celrep.2025.116761 [paper, repository]

An ultrastructural map of a spinal sensorimotor circuit reveals the potential of astroglia modulation.

Journal: Cell reports

Authors' code: Zenodo 17475612 (CC-BY-4.0), zacharymkoh/spinal-sensorimotor-circuit (no license)

Status: code verified, 4 files readable, 1 match

[9504] doi:10.1021/acsomega.5c08775 [paper, repository]

Structure-Guided Discovery of CHI3L1 Inhibitors from Ultralarge Chemical Spaces for Glioblastoma Therapy.

Journal: ACS omega

Authors' code: litfsindt/LIT-SpaceDock (MIT)

Status: code verified, 7 files readable, 1 match

[9505] doi:10.1038/s41467-025-67623-6 [paper, data]

Resolving forebrain developmental organisation by analysis of differential growth patterns.

Journal: Nature communications

Status: data only, 1 dataset cited

[9506] doi:10.1038/s41467-025-67725-1 [paper, data]

Targeted antisense oligonucleotide treatment rescues developmental alterations in spinal muscular atrophy organoids.

Journal: Nature communications

Status: data only, 1 dataset cited

[9507] doi:10.1038/s41467-025-67855-6 [paper, repository]

Investigating action topography in visual cortex and deep artificial neural networks.

Journal: Nature communications

Authors' code: zhoubolei/moments_models (BSD-2-Clause), neuroailab/TDANN (no license), OSF ctmbx (no license), DavideCortinovis/Action-topography-in-visual-cortex (MIT)

Status: code verified, 120 files readable, 8 matches

[9508] doi:10.1038/s41467-025-67930-y [paper, data]

Chromatin remodeling factor BAF155 coordinates oligodendroglial-neuronal communications linked to regional myelination and autism-like behavioral deficits in mice.

Journal: Nature communications

Status: data only, 2 datasets cited

[9509] doi:10.1038/s41531-025-01234-2 [paper]

The LRRK2 P1446L mutation triggers dopaminergic neurodegeneration via DAPK1-mediated microglial neuroinflammation and neuronal apoptosis.

Journal: NPJ Parkinson's disease

Status: code on request

[9510] doi:10.1038/s41598-025-33385-w [paper, repository]

Jacobian Granger causality for count and binary data with applications to causal network inference.

Journal: Scientific reports

Authors' code: suryadi-t/Discrete-JGC (GPL-3.0)

Status: code verified, 5 files readable, 5 matches

[9511] doi:10.1038/s44271-025-00345-z [paper, repository]

Accented speech modulates multiple event-related potential components across multiple levels of language processing.

Journal: Communications psychology

Authors' code: OSF n7pky (no license)

Status: code verified, 39 files readable, 4 matches

[9512] doi:10.1186/s12935-025-04126-w [paper, data]

Development and validation of a novel glioblastoma prognostic model: identifying STOX1 and ZNF248 as ferroptosis-related biomarkers.

Journal: Cancer cell international

Status: data only, 1 dataset cited

[9513] doi:10.1186/s12984-025-01836-0 [paper, data]

Visual ERP-based brain-computer interface use with severe physical, speech and eye movement impairments: case studies.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 2 datasets cited

[9514] doi:10.1186/s40478-025-02150-5 [paper, data]

Synaptic changes contribute to persistent extra-motor behaviour deficits in amyotrophic lateral sclerosis.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[9515] doi:10.3390/ijms27010091 [paper, repository]

The Neuropeptide Neuroparsin-A Regulates the Establishment of Dominance Hierarchy in Bumblebees.

Journal: International journal of molecular sciences

Authors' code: aertslab/create_cisTarget_databases (no license)

Status: code verified, 29 files readable, 1 match

[9516] doi:10.64898/2025.12.19.695526 [paper]

Why motor learning involves multiple systems: an algorithmic perspective

Journal: bioRxiv (preprint)

Status: code on request

Saturday, 20 December 2025 (17 papers)

[9517] doi:10.1007/s11357-025-02042-5 [paper, data]

Age-dependent modulations of hemispheric small-world networks in different eye states: resting-state electroencephalogram research.

Journal: GeroScience

Status: data only, 2 datasets cited

[9518] doi:10.1007/s12311-025-01943-7 [paper, repository]

Pontine Functional Connectivity Gradients.

Journal: Cerebellum (London, England)

Authors' code: xaviergp/cerebellum_gradients (MIT), neuralabc (no license)

Status: code verified, 34 files readable, 2 matches

[9519] doi:10.1016/j.celrep.2025.116746 [paper, repository]

Dual developmental effects of ARX poly-alanine mutations on human cortical excitatory and inhibitory neurons.

Journal: Cell reports

Authors' code: parulvarma123/ARX_Organoids_scRNAseq (no license), Zenodo 17426624 (CC-BY-4.0), mgiugliano/SpiQ (CC0-1.0)

Status: code verified, 44 files readable, 12 matches

[9520] doi:10.1038/s41420-025-02906-x [paper, data]

Melatonin orchestrates mitochondrial fusion dynamics-mediated WNT/β-catenin signaling to promote dopaminergic neuronal differentiation of human iPS and nerve regeneration in a MPTP-induced mouse model of Parkinson's disease.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[9521] doi:10.1038/s41467-025-67154-0 [paper, repository]

SETD1A regulates psychiatric gene networks involved in genomic stability and synaptic function in rare and sporadic schizophrenia.

Journal: Nature communications

Authors' code: paquolalab/Sawada_et_al_SETD1A (no license)

Status: code verified, 22 files readable, 6 matches

[9522] doi:10.1038/s41467-025-67424-x [paper, repository]

Mapping cis- and trans-regulatory target genes of human-specific deletions.

Journal: Nature communications

Authors' code: tdfair (no license)

Status: code verified

[9523] doi:10.1038/s41467-025-67480-3 [paper, repository]

Trait-like visual cortical hyperactivity in trait anxiety.

Journal: Nature communications

Authors' code: LiLabFSU/Anxious-Vision-Trait-like-cortical-hyperactivity-in-trait-anxiety (no license)

Status: code verified, 5 files readable, 6 matches

[9524] doi:10.1038/s41531-025-01212-8 [paper]

Immune and metabolic signatures characterise constipation-driven endophenotypes in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[9525] doi:10.1038/s41598-025-30470-y [paper, repository]

VENturing into machine learning for the morphological analysis of von Economo neurons.

Journal: Scientific reports

Authors' code: mindprobe.eu (no license), julian-tejada/morphologycalAnalysisVENs (no license)

Status: code verified, 4 files readable, 12 matches

[9526] doi:10.1038/s42003-025-09362-4 [paper]

Task-invariant anterior-to-posterior large-scale phase gradients of electrocorticogram oscillations during picture naming and wrist extension.

Journal: Communications biology

Status: code on request

[9527] doi:10.1038/s42003-025-09372-2 [paper, data]

Pupil size predicts exploration through critical slowing in prefrontal dynamics.

Journal: Communications biology

Status: code on request, 1 dataset cited

[9528] doi:10.1038/s44271-025-00365-9 [paper, repository]

Self-referential judgments from the same personality trait scales show increased representational similarity in mPFC.

Journal: Communications psychology

Authors' code: OSF a549r (no license)

Status: code verified, 1 file readable, 3 matches

[9529] doi:10.1186/s12888-025-07524-6 [paper]

Disrupted genes and pathways in schizophrenia: a robust analysis of the brain and blood.

Journal: BMC psychiatry

Status: data only

[9530] doi:10.1186/s12974-025-03658-2 [paper, repository]

Neuronal TDP-43 pathology drives astrocytic interferon response in a mouse model of ALS.

Journal: Journal of neuroinflammation

Authors' code: bbi-lab/bbi-dmux (other)

Status: code verified, 30 files readable, 1 match

[9531] doi:10.1186/s13195-025-01934-0 [paper, repository]

Specific genetic and biological patterns underlying cortical morphological alterations in vascular cognitive impairment.

Journal: Alzheimer's research & therapy

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), netneurolab/hansen_receptors (CC-BY-NC-SA-4.0), isebenius/MIND (no license), rmarkello/abagen (BSD-3-Clause), SarahMorgan/Morphometric_Similarity_SZ (MIT), frantisekvasa/rotate_parcellation (MIT), davidroad/WebCSEA (no license)

Status: code verified, 134 files readable, 8 matches

[9532] doi:10.3390/ijms27010047 [paper, repository]

β<sub>2</sub>E153 Residue at Loop B of GABA<sub>A</sub>R Is Involved in Agonist Stabilization and Gating Properties.

Journal: International journal of molecular sciences

Authors' code: DCPROGS (no license), michal2am/bioscripts (no license)

Status: code verified, 200 files readable, 1 match

[9533] doi:10.3390/ijms27010058 [paper, repository]

The Myeloid Biomarker <i>MS4A6A</i> Drives an Immunosuppressive Microenvironment in Glioblastoma via Activation of the PGE2 Signaling Axis.

Journal: International journal of molecular sciences

Authors' code: cielowq (no license)

Status: code verified

Friday, 19 December 2025 (41 papers)

[9534] doi:10.1002/jmri.70180 [paper, repository]

Developmental Brain Age Estimation From MRI Data: A Systematic Review of Deep Learning Approaches and Open Datasets.

Journal: Journal of magnetic resonance imaging : JMRI

Authors' code: gunvantc/infant-brain-age-public (no license), andwang1/brainsurfacetk (MIT), bigting84/Brain-Age-Prediction (no license), huggingface.co/uais-zll/hrinet (apache), jwhong1125/Fetal_BrainAge (GPL-3.0), tg2001/MTSE-U-Net (no license)

Status: code verified, 557 files readable

[9535] doi:10.1002/mrm.70227 [paper, repository]

Accelerating Multiparametric Quantitative MRI Using Self-Supervised Scan-Specific Implicit Neural Representation With Model Reinforcement.

Journal: Magnetic resonance in medicine

Authors' code: I3Tlab/REFINE-MORE (BSD-2-Clause)

Status: code verified, 9 files readable, 6 matches

[9536] doi:10.1002/mrm.70230 [paper, repository]

Time-Division Multiplexing for Parallel Transmission at Ultra-High Field With Limited RF Channels.

Journal: Magnetic resonance in medicine

Authors' code: fglang/tdm_ptx (MIT)

Status: code verified, 25 files readable, 10 matches

[9537] doi:10.1007/s00330-025-12159-y [paper, repository]

Moderate and severe traumatic brain injury: lesion frequency distribution maps and prognostic importance of brain contusions on early MRI.

Journal: European radiology

Authors' code: raidionics/raidionics-models (BSD-2-Clause)

Status: empty repository, 2 files readable

[9538] doi:10.1016/j.amepre.2025.108194 [paper, data]

Neural Predictors of Vaping: Covert Emotional Engagement Versus Reactance to Overt Emotional Appeals in Vaping Prevention Message Processing.

Journal: American journal of preventive medicine

Status: data only, 1 dataset cited

[9539] doi:10.1016/j.cccb.2025.100526 [paper, repository]

Evaluating regional and global diffusion measures as biomarkers for vascular contributions to cognitive impairment and dementia.

Journal: Cerebral circulation - cognition and behavior

Authors' code: psmd-marker.com (no license)

Status: code verified

[9540] doi:10.1016/j.celrep.2025.116694 [paper, repository]

Histone variant H2BE controls activity-dependent gene expression and homeostatic scaling.

Journal: Cell reports

Authors' code: shenlab-sinai/ngsplot (CC-BY-NC-SA-4.0)

Status: code verified, 40 files readable, 1 match

[9541] doi:10.1016/j.celrep.2025.116741 [paper]

Repeat-associated non-AUG translation as a common mechanism for the polyGln ataxias.

Journal: Cell reports

Status: code on request

[9542] doi:10.1016/j.cub.2025.11.058 [paper]

Re-exposure to reward re-evaluates related memories.

Journal: Current biology : CB

Status: code on request

[9543] doi:10.1016/j.isci.2025.114507 [paper, repository]

A distribution-aware semi-supervised pipeline for cost-effective neuron segmentation.

Journal: iScience

Authors' code: yanchaoz/SL-SSNS (MIT), funkelab/lsd (MIT)

Status: code verified, 131 files readable

[9544] doi:10.1016/j.isci.2025.114508 [paper, repository]

A chill brain-music interface for enhancing music chills with personalized playlists.

Journal: iScience

Authors' code: OSF kx7eq (no license)

Status: empty repository

[9545] doi:10.1016/j.nicl.2025.103935 [paper, repository]

Towards precision functional brain network mapping in Parkinson's disease.

Journal: NeuroImage. Clinical

Authors' code: GrattonLab/Chernicky_2025_PD_feasibility (no license)

Status: dead link

[9546] doi:10.1016/j.nicl.2025.103936 [paper]

Structural brain alterations and predictors of clinical improvement in functional cognitive disorder after concussion.

Journal: NeuroImage. Clinical

Status: code on request

[9547] doi:10.1016/j.xgen.2025.101103 [paper, repository]

A high-resolution atlas of the brain predicts lineage and birth order underlying neuronal identity.

Journal: Cell genomics

Authors' code: aaron-allen/Dmel-adult-central-brain-atlas (no license), Zenodo 17513514 (CC-BY-4.0), SGDDNB/ShinyCell (GPL-3.0), aaron-allen/easyShinyCell (GPL-3.0)

Status: code verified, 176 files readable, 22 matches

[9548] doi:10.1021/acschemneuro.5c00511 [paper, repository]

Haptoglobin and Hemopexin Redirect Heme-Driven Oxidative Stress and Neurotoxicity in Organotypic Brain Slices.

Journal: ACS chemical neuroscience

Authors' code: Zenodo 15530642 (CC-BY-4.0)

Status: code verified, 1 file readable

[9549] doi:10.1038/s41380-025-03392-4 [paper, repository]

A multi-ancestry meta genome-wide association study of migraine among veterans: associations with traumatic brain injury, depression, and post-traumatic stress disorder.

Journal: Molecular psychiatry

Authors' code: rgcgithub.github.io/regenie (no license), statgen/METAL (BSD-2-Clause)

Status: code verified, 96 files readable

[9550] doi:10.1038/s41380-025-03403-4 [paper, data]

Prenatal maternal immune activation triggers lasting cell-specific transcriptomic dysregulation in the amygdala of primate offspring.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[9551] doi:10.1038/s41514-025-00296-z [paper, data]

Age-related nigral downregulation of the Parkinson's risk factor FAM49B primes human microglia for inflammaging.

Journal: npj aging

Status: data only, 1 dataset cited

[9552] doi:10.1038/s41540-025-00632-9 [paper, repository]

Modelling dysfunction-specific interventions for seizure termination in epilepsy.

Journal: NPJ systems biology and applications

Authors' code: Aero264/seizure_interventions (GPL-3.0)

Status: code verified, 7 files readable, 2 matches

[9553] doi:10.1038/s41598-025-31145-4 [paper]

Head impact biomechanics across men's and women's contact sports: a comparative and clustering analysis.

Journal: Scientific reports

Status: code on request

[9554] doi:10.1038/s43587-025-01028-4 [paper, data]

Allosteric activation of a cell-type-specific GPR120 inhibits amyloid pathology of Alzheimer's disease.

Journal: Nature aging

Status: data only, 2 datasets cited

[9555] doi:10.1038/s43856-025-01314-7 [paper]

Glioblastoma zebrafish Avatars guide therapeutic decisions in a patient with gliosarcoma: a case report.

Journal: Communications medicine

Status: code on request

[9556] doi:10.1073/pnas.2521089122 [paper, repository]

High-speed X-ray tomography for 4D imaging.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: igrega348/neural_xray (MIT)

Status: code verified, 14 files readable, 1 match

[9557] doi:10.1088/1741-2552/ae2359 [paper, repository]

Adaptive neuromodulation dialogues: navigating current challenges and emerging innovations in neuromodulation system development.

Journal: Journal of neural engineering

Authors' code: dabi.loni.usc.edu (no license), braincode.ca (no license)

Status: code verified

[9558] doi:10.1088/1741-2552/ae2541 [paper, repository]

Predicting spiking activity from scalp EEG.

Journal: Journal of neural engineering

Authors' code: OSF vq5th (no license), Zenodo 7006340 (MIT), klabhub/neurostim (MIT)

Status: code verified, 309 files readable, 7 matches

[9559] doi:10.1093/braincomms/fcaf488 [paper, repository]

Cortical asymmetry in autosomal dominant Alzheimer's disease progression.

Journal: Brain communications

Authors' code: Agnes2/CAI (MIT)

Status: code verified, 3 files readable

[9560] doi:10.1126/sciadv.aec7836 [paper, repository]

Growth hormone is required for hippocampal engram cell maturation.

Journal: Science advances

Authors' code: Zenodo 15573651 (CC-BY-4.0)

Status: code verified, 1 file readable

[9561] doi:10.1162/imag.a.1056 [paper, repository]

Efficient prospective electric field-informed localization of motor cortical targets of transcranial magnetic stimulation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: david-schu/efield-informed-motor-mapping (CC-BY-4.0)

Status: code verified, 31 files readable, 3 matches

[9562] doi:10.1162/imag.a.1057 [paper, repository]

CBMR: Coordinate-based meta-regression for group and covariate inference.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: yifan0330/Multi-group-CBMR (no license), nimare.readthedocs.io (no license)

Status: code verified, 23 files readable, 3 matches

[9563] doi:10.1186/s13195-025-01931-3 [paper, data]

Development and validation of an interpretable clinical scoring model to monitor the progression of preclinical Alzheimer's disease.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[9564] doi:10.1186/s13195-025-01946-w [paper, repository]

Unsupervised machine learning integrates genomic variants and EMR to unravel mechanisms of brain hemorrhage and epilepsy as early indicators of Alzheimer's in down syndrome.

Journal: Alzheimer's research & therapy

Authors' code: portal.kidsfirstdrc.org/login (no license), edward0012/essential-python-code-for-down-syndrome-brain-bleeding-factor-analysis](https: (no license)

Status: code verified

[9565] doi:10.1186/s40478-025-02171-0 [paper, repository]

Vincristine-induced brain toxicity is reduced with prevention of peripheral axon degeneration in Sarm1 knockout mice.

Journal: Acta neuropathologica communications

Authors' code: Mouse-Imaging-Centre/pydpiper (BSD-3-Clause)

Status: code verified, 69 files readable

[9566] doi:10.1186/s43074-025-00216-0 [paper, repository]

Real-time wide-field fluorescence lifetime imaging via single-snapshot acquisition for biomedical applications.

Journal: PhotoniX

Authors' code: smXplorer/SwissSPAD-Live (no license), vkp217/SS_RLD (no license)

Status: code verified, 10 files readable, 1 match

[9567] doi:10.1242/dev.204811 [paper, repository]

A conserved differentiation programme facilitates inhibitory neuron production in the developing mouse and human cerebellum.

Journal: Development (Cambridge, England)

Authors' code: AHBrand-Lab/DamID_scripts (no license), BayinLab/Christensen_et_al_2025 (MIT)

Status: code verified, 21 files readable, 18 matches

[9568] doi:10.1242/dev.205248 [paper, data]

Neural crest induction requires SALL4-mediated BAF recruitment to lineage specific enhancers.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[9569] doi:10.1371/journal.pcbi.1013837 [paper, repository]

ASPEN: Robust detection of allelic dynamics in single cell RNA-seq.

Journal: PLoS computational biology

Authors' code: ewonglab/ASPEN (no license), ewonglab/ASPEN_manuscript (MIT)

Status: code verified, 31 files readable, 5 matches

[9570] doi:10.1371/journal.pone.0335885 [paper, data]

Effects of intention understanding and brief imitative experience on the mirror neuron system: An EEG study using Japanese sign language.

Journal: PloS one

Status: data only, 2 datasets cited

[9571] doi:10.64898/2025.12.17.694830 [paper, repository]

Gelatinase activity is required for Müller glia morphogenesis and neuronal maintenance in the retina

Journal: bioRxiv (preprint)

Authors' code: SeuntjensLab/Easy_HCR (GPL-3.0), biancolab/okrsuite (no license)

Status: code verified, 16 files readable

[9572] doi:10.64898/2025.12.17.694867 [paper, repository]

A Comparative Evaluation of Molecular Connectivity and Covariance Approaches

Journal: bioRxiv (preprint)

Authors' code: NeuroimagingLabsMUV/fPET-toolbox (GPL-2.0)

Status: code verified, 95 files readable, 6 matches

[9573] doi:10.64898/2025.12.17.694950 [paper, repository]

Mecp2 deficiency impairs microscale cortical network topology and dynamics in a Rett syndrome mouse model

Journal: bioRxiv (preprint)

Authors' code: SAND-Lab/MEA-NAP (GPL-3.0)

Status: code verified, 771 files readable, 8 matches

[9574] doi:10.7717/peerj.20354 [paper, repository]

Proprioception and muscle performance unchanged by in-home step training in multiple sclerosis: secondary outcomes analysis.

Journal: PeerJ

Authors' code: OSF gazfw (no license), OSF k8bpg (no license)

Status: code verified

Thursday, 18 December 2025 (45 papers)

[9575] doi:10.1007/s00109-025-02621-1 [paper, data]

Preclinical evaluation of [<sup>11</sup>C]CHDI-009R for quantification of mutant huntingtin aggregates.

Journal: Journal of molecular medicine (Berlin, Germany)

Status: data only, 1 dataset cited

[9576] doi:10.1016/j.bbi.2025.106225 [paper, repository]

Brain-immune correlates of quality of life in adolescents with chronic musculoskeletal pain.

Journal: Brain, behavior, and immunity

Authors' code: OSF rt389 (no license), neuroPENlab/publications (no license)

Status: code verified, 6 files readable, 6 matches

[9577] doi:10.1016/j.celrep.2025.116732 [paper, repository]

Neural stem cell quiescence is actively maintained by the epigenome.

Journal: Cell reports

Authors' code: annamalkowska/Malkowska-et-al (no license)

Status: code verified, 12 files readable, 5 matches

[9578] doi:10.1016/j.isci.2025.114415 [paper, repository]

<i>Toxoplasma gondii</i>-induced region-specific disintegration in glutamatergic neurotransmission is linked to cognitive impairments in mice.

Journal: iScience

Authors' code: IuriiSavvateev/Toxoplasma_behaviour_neurotransmission (no license)

Status: dead link

[9579] doi:10.1016/j.isci.2025.114457 [paper, data]

Modulation of striatal cAMP levels: A key pathway in the treatment of hyperkinetic movement disorders.

Journal: iScience

Status: code on request, 3 datasets cited

[9580] doi:10.1016/j.isci.2025.114482 [paper]

Embryonic lineage-specific iPSC-derived mesenchymal stem/stromal cells exhibit different morphologies and intrinsic functions.

Journal: iScience

Status: code on request

[9581] doi:10.1016/j.isci.2025.114485 [paper, repository]

Shared early processing of distinct tactile features.

Journal: iScience

Authors' code: Zenodo 14809561 (CC-BY-4.0), Zenodo 17314317 (CC-BY-4.0)

Status: code verified, 4 files readable

[9582] doi:10.1016/j.isci.2025.114487 [paper]

Environmental enrichment accelerates the stabilization of cortical representation during <i>de novo</i> learning.

Journal: iScience

Status: code on request

[9583] doi:10.1016/j.isci.2025.114489 [paper]

Zhigancao decoction alleviates Parkinson's disease via inhibiting TNF/NF-κB and Ras/ERK-mediated neuroinflammation and apoptosis.

Journal: iScience

Status: code on request

[9584] doi:10.1016/j.mex.2025.103770 [paper, repository]

The integration of virtual reality and EEG: A step-by-step guideline.

Journal: MethodsX

Authors' code: MCBLaboratory/Virtual-Reality (MIT)

Status: empty repository, 2 files readable

[9585] doi:10.1016/j.stemcr.2025.102744 [paper, data]

Autophagy is required for the development and functionality of lacrimal gland-like organoids.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[9586] doi:10.1016/j.xcrm.2025.102520 [paper, data]

Oxidized MIF is an Alzheimer's disease drug target relaying external risk factors to tau pathology.

Journal: Cell reports. Medicine

Status: code on request, 1 dataset cited

[9587] doi:10.1016/j.xpro.2025.104245 [paper]

Protocol for evaluating the effects of tDCS and tACS on brain oscillations and motor symptoms in patients with Parkinson's disease.

Journal: STAR protocols

Status: code on request

[9588] doi:10.1016/j.xpro.2025.104278 [paper]

Protocol for single-nucleus RNA sequencing of adult C. elegans neurons.

Journal: STAR protocols

Status: code on request

[9589] doi:10.1017/s0033291725102705 [paper, repository]

Cortical morphometric gradients reveal molecular and cognitive underpinnings of bipolar disorder.

Journal: Psychological medicine

Authors' code: isebenius/MIND (no license), MICA-MNI/BrainSpace (BSD-3-Clause), sarahmorgan/morphometric_similarity_sz (MIT), frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 145 files readable, 5 matches

[9590] doi:10.1038/s41398-025-03791-9 [paper, repository]

Cortical markers of excitation/inhibition balance are associated with sensory responsivity from infancy in longitudinal cohorts enriched for autism and ADHD.

Journal: Translational psychiatry

Authors' code: OSF c6mq4 (no license), basis-network.org (no license)

Status: code verified, 1 file readable, 1 match

[9591] doi:10.1038/s41467-025-66309-3 [paper, repository]

Prefrontal gamma oscillations and fear extinction learning require early postnatal interneuron-oligodendroglia communication.

Journal: Nature communications

Authors' code: d5674/c_ibaceta/psd-volt (no license)

Status: code verified, 7 files readable, 3 matches

[9592] doi:10.1038/s41467-025-67586-8 [paper, repository]

Gut microbiota modulates aversive learning and memory of honeybees (Apis mellifera).

Journal: Nature communications

Authors' code: RoyalJelly1995/The-analysis-of-SER-percentage-during-aversive-learning-acquisition-using-the-lme4-package-in-R (GPL-3.0)

Status: code verified, 3 files readable, 1 match

[9593] doi:10.1038/s41467-025-67767-5 [paper, repository]

Motion-corrected eye tracking improves gaze accuracy during visual fMRI experiments.

Journal: Nature communications

Authors' code: jwparks/mocet (MIT), deepmreye/deepmreye (LGPL-3.0)

Status: code verified, 47 files readable, 14 matches

[9594] doi:10.1038/s41593-025-02143-6 [paper, data]

Cold and lithium delay forgetting of olfactory memories in Caenorhabditis elegans.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[9595] doi:10.1038/s41593-025-02154-3 [paper, repository]

CRISPRi screening in cultured human astrocytes uncovers distal enhancers controlling genes dysregulated in Alzheimer's disease.

Journal: Nature neuroscience

Authors' code: shendurelab/single-cell-ko-screens (no license), Voineagulab/astrocyte_crispri (no license), mathyslab7/ROSMAP_snRNAseq_PFC (no license), hb.flatironinstitute.org/sei (no license), portals.broadinstitute.org/gppx/crispick (no license), hgdownload.cse.ucsc.edu/goldenpath/hg19 (no license), hgdownload.cse.ucsc.edu/goldenpath/hg38 (no license), genehopper.ifis.cs.tu-bs.de/downloads (no license), disgenet.org/downloads (no license), hb.flatironinstitute.org/deepsea (no license)

Status: code verified, 302 files readable, 40 matches

[9596] doi:10.1038/s41598-025-32404-0 [paper]

Plasma p-tau217 and p-tau217/Aβ<sub>1-42</sub> ratios associate with medial temporal lobe subfield atrophy in normal aging and mild cognitive impairment.

Journal: Scientific reports

Status: code on request

[9597] doi:10.1038/s41598-025-32704-5 [paper, repository]

Using explainable machine learning to elucidate social and neurobehavioral risk factors linked to nonmedicinal opioid use in young adults.

Journal: Scientific reports

Authors' code: explainable-opioid/opioid-paper (no license)

Status: code verified, 1 file readable, 3 matches

[9598] doi:10.1038/s41746-025-02154-4 [paper, repository]

An Automated Classifier of Harmful Brain Activities for Clinical Usage Based on a Vision-Inspired Pre-trained Framework.

Journal: NPJ digital medicine

Authors' code: kaggle.com/code/sunyuri (no license), kaggle.com/competitions/hms-harmful-brain-activity-classification (no license)

Status: dead link

[9599] doi:10.1038/s42003-025-09205-2 [paper, repository]

Differential engagement of thalamic nuclei orchestrates consciousness states across anesthesia, sleep, and disorders of consciousness.

Journal: Communications biology

Authors' code: Zenodo 17204881 (CC-BY-4.0)

Status: code verified, 7 files readable, 3 matches

[9600] doi:10.1038/s42003-025-09377-x [paper, repository]

Hierarchical linguistic predictions and cross-level information updating during narrative comprehension.

Journal: Communications biology

Authors' code: jina-ai/clip-as-service (Apache-2.0), FaxinZ/Hierarchical_Linguistic_Prediction (MIT)

Status: code verified, 59 files readable, 6 matches

[9601] doi:10.1073/pnas.2513533122 [paper, data]

Body ownership gates tactile awareness by reshaping the somatosensory functional connectivity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[9602] doi:10.1080/07853890.2025.2600749 [paper, data]

Impact of repetitive transcranial magnetic stimulation combined with traditional Chinese Tuina for stroke: a systematic review and meta-analysis.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[9603] doi:10.1136/bmjopen-2025-107697 [paper]

Liberal versus restrictive red blood cell transfusion thresholds in acute acquired brain injury: a systematic review and meta-analysis.

Journal: BMJ open

Status: code on request

[9604] doi:10.1159/000550132 [paper, data]

Developmental Changes in the Expression of Lysophosphatidic Acid Receptor 4 in the Mouse Brain.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[9605] doi:10.1162/nol.a.205 [paper, data]

Intracerebral Electrical Stimulation of the Left Occipito-Temporal Cortex Induces Pure Alexia.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 1 dataset cited

[9606] doi:10.1162/nol.a.27 [paper, repository]

Neural Predictors for the Generalization of Semantic and Phonological Treatment to Discourse Performance in Chronic Post-Stroke Aphasia.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: neurolabusc/NiiStat (GPL-2.0), OSF scg6f (no license)

Status: code verified, 64 files readable, 2 matches

[9607] doi:10.1162/opmi.a.316 [paper, repository]

Words and Worlds Both: Dynamic Effects of Distributional and Sensorimotor Information in Semantic Processing.

Journal: Open mind : discoveries in cognitive science

Authors' code: OSF 6efp8 (no license)

Status: code verified, 16 files readable, 1 match

[9608] doi:10.1186/s12883-025-04582-x [paper, data]

Integrating machine learning and experiments to elucidate the potential molecular mechanisms of methylparaben-induced Alzheimer's disease: evidence from a Tau hyperphosphorylation cell model.

Journal: BMC neurology

Status: data only, 1 dataset cited

[9609] doi:10.1186/s13229-025-00689-7 [paper, data]

Dim light at night disrupts the sleep-wake cycle and exacerbates abnormal EEG activity in Cntnap2 knockout mice: implications for autism spectrum disorders.

Journal: Molecular autism

Status: data only, 1 dataset cited

[9610] doi:10.1523/eneuro.0161-25.2025 [paper, repository]

The Odor Delivery Optimization Research System (ODORS): An Open-Source Olfactometer for Behavioral Assessments in Tethered and Untethered Rodents.

Journal: eNeuro

Authors' code: FilipKosel/ODORS (GPL-3.0)

Status: code verified, 6 files readable, 2 matches

[9611] doi:10.3389/fnhum.2025.1679329 [paper, data]

Improved filter bank common spatial pattern algorithm based on the sparrow search algorithm.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[9612] doi:10.3389/fnins.2025.1714159 [paper, repository]

Automated brain atrophy quantification from clinical MRI predicts early neurological deterioration in anterior choroidal artery territory infarction.

Journal: Frontiers in neuroscience

Authors' code: BBillot/SynthSR (Apache-2.0)

Status: code verified, 35 files readable

[9613] doi:10.3389/fphys.2025.1733266 [paper, repository]

The ion transport, GPCR, and RTK toolkit expression in the human cerebrovascular endothelial cell line, hCMEC/D3: an Omics perspective.

Journal: Frontiers in physiology

Authors' code: TCP-Lab/x.FASTQ (MIT), TCP-Lab/Endothelion (no license), TCP-Lab/SeqLoader (no license), TCP-Lab (no license)

Status: code verified, 35 files readable, 9 matches

[9614] doi:10.3390/ani15243645 [paper, data]

Genome-Wide Identification of the Transient Receptor Potential Channel Family in Nile Tilapia and Expression Analysis in Response to Cold Stress.

Journal: Animals : an open access journal from MDPI

Status: data only, 2 datasets cited

[9615] doi:10.3390/bs15121747 [paper, repository]

Association of Menstrual Cycle with Fronto-Striatal Connectivity and Delay Discounting.

Journal: Behavioral sciences (Basel, Switzerland)

Authors' code: OSF cw5y6 (no license)

Status: code verified, 6 files readable, 1 match

[9616] doi:10.3390/cimb47121066 [paper, data]

Bioinformatics Identification and Experimental Validation of Ferroptosis- and Immune Infiltration-Associated Biomarkers in Ischemic Stroke.

Journal: Current issues in molecular biology

Status: data only, 1 dataset cited

[9617] doi:10.3390/jimaging11120454 [paper, data]

A Structured Review and Quantitative Profiling of Public Brain MRI Datasets for Foundation Model Development.

Journal: Journal of imaging

Status: data only, 17 datasets cited

[9618] doi:10.3390/nu17243958 [paper]

From Microbiota to Metabolomics: How <i>Corylus heterophylla</i> Fisch. Male Flower Extract Shields Mice from Cognitive Decline.

Journal: Nutrients

Status: data only

[9619] doi:10.64898/2025.12.16.694602 [paper, data]

Auditory and visual object processing in olfactory cortex of individuals with life-long olfactory deprivation

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

Wednesday, 17 December 2025 (46 papers, 13 on this page)

[9620] doi:10.1016/j.celrep.2025.116729 [paper, repository]

The RNA exosome maintains cellular RNA homeostasis by controlling transcript abundance in the brain.

Journal: Cell reports

Authors' code: themortonlab/flyprojects (no license), Zenodo 17555725 (CC-BY-4.0)

Status: code verified, 3 files readable, 3 matches

[9621] doi:10.1016/j.ebiom.2025.106085 [paper, repository]

SEEGformer: personalised SEEG-based seizure detection and epileptogenic zone localisation for drug-resistant epilepsy.

Journal: EBioMedicine

Authors' code: wcx7/SEEGformer (MIT), ieeg-swez.ethz.ch (no license)

Status: code verified, 12 files readable, 6 matches

[9622] doi:10.1016/j.mex.2025.103769 [paper, data]

BRAIN-META: A reproducible CNN-vision transformer meta-ensemble pipeline for explainable brain tumor classification.

Journal: MethodsX

Status: data only, 1 dataset cited

[9623] doi:10.1016/j.neuron.2025.11.005 [paper, repository]

Synchrony timescales underlie irregular neocortical spiking.

Journal: Neuron

Authors' code: figshare 30866516 (CC-BY-4.0)

Status: code verified, 14 files readable, 2 matches

[9624] doi:10.1021/acs.analchem.5c05767 [paper, repository]

Imaging of Protein Assemblies up to 231 kDa in Tissues with Nano-DESI Mass Spectrometry.

Journal: Analytical chemistry

Authors' code: coopergroup-massspec/Q-HCD_voltage_plots (no license)

Status: code verified, 2 files readable, 1 match

[9625] doi:10.1038/s12276-025-01593-z [paper, data]

Hv1 inhibition rescues AD pathology by restoring microglial mitochondrial function and enhancing mitochondrial transfer.

Journal: Experimental & molecular medicine

Status: data only, 1 dataset cited

[9626] doi:10.1038/s41386-025-02297-8 [paper, repository]

Cue labeling reduces cigarette craving and associated neural activity.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: OSF 92e4t (no license)

Status: code verified, 1 file readable, 1 match

[9627] doi:10.1038/s41392-025-02527-x [paper, data]

Hypoglycemia induces brain metabolic reprogramming and neurodegeneration via serum response factor and myocardin-related transcription factor-A.

Journal: Signal transduction and targeted therapy

Status: data only, 1 dataset cited

[9628] doi:10.1038/s41467-025-66104-0 [paper, repository]

Brain-wide resting-state fMRI network dynamics elicited by activation of single thalamic input.

Journal: Nature communications

Authors' code: bispmri/Optogenetic_rsfMRI (no license), Zenodo 17309535 (CC-BY-4.0)

Status: code verified, 12 files readable, 1 match

[9629] doi:10.1038/s41467-025-66112-0 [paper, data]

The gut vagal sensory pathway drives postprandial sleep via activation of PVH-projecting GABAergic neurons in the NTS.

Journal: Nature communications

Status: data only, 1 dataset cited

[9630] doi:10.1038/s41467-025-67038-3 [paper, repository]

Time or distance encoding by hippocampal neurons via heterogeneous ramping rates.

Journal: Nature communications

Authors' code: the-wang-lab/Code-Heldman-NC-2025 (no license)

Status: code verified, 75 files readable, 3 matches

[9631] doi:10.1038/s41467-025-67610-x [paper, repository]

3D-MINFLUX nanoscopy reveals distinct allosteric mechanisms for activation and modulation of PIEZO1 by Yoda1.

Journal: Nature communications

Authors' code: StefanLechnerUKE/PIEZO1_Yoda1_MINFLUX (no license), Zenodo 17700348 (CC-BY-4.0)

Status: code verified, 11 files readable, 5 matches

[9632] doi:10.1038/s41586-025-09770-w [paper, repository]

Astrocyte CCN1 stabilizes neural circuits in the adult brain.

Journal: Nature

Authors' code: Zenodo 15785196 (CC-BY-4.0)

Status: code verified, 12 files readable, 19 matches

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