Every paper, by date: page 45

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 45 of 200: 11 December 2025 to 5 December 2025.

Thursday, 11 December 2025 (56 papers, 44 on this page)

[9857] doi:10.1016/j.xgen.2025.101101 [paper, repository]

Transcript-guided targeted cell enrichment for scalable single-nucleus RNA sequencing.

Journal: Cell genomics

Authors' code: andrewliao99/EnrichSci_analysis (no license), Zenodo 17497563 (CC-BY-4.0), MarioniLab/miloR (GPL-3.0), cole-trapnell-lab/monocle2-rge-paper (no license), cole-trapnell-lab/monocle3 (other), scverse/scanpy (BSD-3-Clause), swolock/scrublet (MIT), alexdobin/STAR (MIT), FelixKrueger/TrimGalore (GPL-3.0), rwnull/insitu_probe_generator (GPL-3.0)

Status: code verified, 696 files readable, 11 matches

[9858] doi:10.1016/j.xpro.2025.104269 [paper]

Protocol for screening of small molecules in a CLN3 disease patient-specific iPSC-derived neuronal progenitor cell model.

Journal: STAR protocols

Status: code on request

[9859] doi:10.1038/s41467-025-66012-3 [paper, repository]

Systematic profiling reveals distinct senescence signatures and regulators across human brain cell types.

Journal: Nature communications

Authors' code: califano-lab/ARACNe-AP (other)

Status: code verified, 14 files readable

[9860] doi:10.1038/s41467-025-66069-0 [paper, repository]

Syngap1 and the development of murine neocortical progenitor cells.

Journal: Nature communications

Authors' code: Zenodo 16914738 (CC-BY-4.0), vanniexu/syngap1 (no license)

Status: code verified, 6 files readable, 1 match

[9861] doi:10.1038/s41467-025-66081-4 [paper, repository]

Prefrontal cortex temporally multiplexes slow and fast dynamics in value learning and memory.

Journal: Nature communications

Authors' code: Zenodo 16751843 (CC-BY-4.0), hemi1997/tworate_rl (no license)

Status: code verified, 84 files readable, 16 matches

[9862] doi:10.1038/s41467-025-66109-9 [paper, repository]

Mid-gestational cell-type-specific transcriptomic signatures in the prefrontal and superior temporal cortex in Down syndrome.

Journal: Nature communications

Authors' code: niuruize/Cell-Type-Specific-Transcriptomic-Signatures-in-the-PFC-and-STP-Cortex-of-DS-Fetuses (no license)

Status: code verified, 27 files readable, 22 matches

[9863] doi:10.1038/s41467-025-66157-1 [paper, repository]

Layer 5 myelination gates corticothalamic coincidence detection.

Journal: Nature communications

Authors' code: JorritMontijn/Acquipix (GPL-3.0), JorritMontijn/ZETA (GPL-3.0), modeldb:8115 (no license), Kolelab/Neuropixels_ephys_Jamann_2025 (MIT), Kolelab/long_range-NEURON-model (no license), imagej.net/plugins/bigstitcher (no license), imagej.net/plugins/snt (no license), napari.org/stable (no license)

Status: code verified, 255 files readable, 10 matches

[9864] doi:10.1038/s41467-025-66185-x [paper, data]

C1q drives neural stem cell quiescence by regulating cell cycle and metabolism through BAI1.

Journal: Nature communications

Status: code on request, 5 datasets cited

[9865] doi:10.1038/s41467-025-67132-6 [paper, repository]

A corticospinal signature for interindividual pain sensitivity.

Journal: Nature communications

Authors' code: canlab/Lindquist_Dynamic_Correlation (no license), Zenodo 15469454 (CC-BY-4.0)

Status: code verified, 165 files readable, 6 matches

[9866] doi:10.1038/s41467-025-67157-x [paper, repository]

Hippocampal-prefrontal orchestration supports higher-order learning for creative ideation.

Journal: Nature communications

Authors' code: canlab/RobustToolbox (GPL-2.0), psy-luolab (no license)

Status: code verified, 38 files readable, 1 match

[9867] doi:10.1038/s41467-025-67302-6 [paper, repository]

Cohesin forms fountains at active enhancers in C. elegans.

Journal: Nature communications

Authors' code: cellfatenucorg/bolaji_luthi_rnaseq (no license), cellfatenucorg/luthi_etal (no license), Zenodo 17582094 (CC-BY-4.0), Zenodo 17582103 (CC-BY-4.0), physical-biology-of-chromatin (no license)

Status: code verified, 120 files readable, 16 matches

[9868] doi:10.1038/s41467-025-67399-9 [paper, repository]

Multi-horizon flight trajectory prediction enabled by time-frequency wavelet transform.

Journal: Nature communications

Authors' code: Zenodo 17624336 (Apache-2.0), musdev7/wtftp_plus (Apache-2.0)

Status: code verified, 52 files readable, 5 matches

[9869] doi:10.1038/s41593-025-02150-7 [paper, repository]

Single-cell spatiotemporal transcriptomic and chromatin accessibility profiling in developing postnatal human and macaque prefrontal cortex.

Journal: Nature neuroscience

Authors' code: Wu-lab-code-repository/PostnatalPFC (no license)

Status: code verified, 11 files readable, 18 matches

[9870] doi:10.1038/s41597-025-06175-2 [paper, repository]

An EEG Dataset of Exploring Navigation in Virtual Reality.

Journal: Scientific data

Authors' code: scidb.cn/en/detail (no license), andlab-um/VR_Navigation (no license)

Status: code verified, 29 files readable, 13 matches

[9871] doi:10.1038/s41597-025-06250-8 [paper, repository]

Tactile-evoked EEG Dataset for Natural Perception Using an Integrated Stimulation-Recording Framework.

Journal: Scientific data

Authors' code: liupeishuai/Code-for-Tactile-evoked-EEG-Dataset (no license)

Status: code verified, 2 files readable

[9872] doi:10.1038/s41597-025-06354-1 [paper, repository]

Semi-automatic annotation of brain vessels in magnetic resonance angiography images.

Journal: Scientific data

Authors' code: Zenodo 17391998 (CC-BY-4.0)

Status: code verified, 16 files readable, 10 matches

[9873] doi:10.1038/s41597-025-06359-w [paper, repository]

Longitudinal multitask wireless electrocorticography data from two fully implanted nonhuman primates.

Journal: Scientific data

Authors' code: Nehilum/bids_converter (MIT)

Status: code verified, 6 files readable, 11 matches

[9874] doi:10.1038/s41598-025-18843-9 [paper, data]

Understanding and simulating border ownership centered segmentation.

Journal: Scientific reports

Status: data only, 2 datasets cited

[9875] doi:10.1038/s41598-025-27312-2 [paper]

Predicting visual object memory through natural eye movement topography.

Journal: Scientific reports

Status: code on request

[9876] doi:10.1038/s41598-025-27606-5 [paper, repository]

Chewing modulates theta oscillation and functional connectivity of the frontocentral cortex in attention and working memory.

Journal: Scientific reports

Authors' code: sespinozae/Paperchew1 (no license)

Status: code verified, 2 files readable, 1 match

[9877] doi:10.1038/s41598-025-29213-w [paper, repository]

High-throughput tracking of freely moving Drosophila reveals variations in aggression and courtship behaviors.

Journal: Scientific reports

Authors' code: ziyingc/flypairtracking (MIT)

Status: code verified, 18 files readable, 4 matches

[9878] doi:10.1038/s41598-025-29768-8 [paper, data]

Interpretable multi-model deep learning framework for automated four-class diagnosis of ocular toxoplasmosis using fundus imaging.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9879] doi:10.1038/s41598-025-32069-9 [paper, data]

Regulation of glypican 6-mediated Wnt activation maintains TDP-43 nuclear localization in neurons.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9880] doi:10.1038/s42003-025-09149-7 [paper]

Metabolic costs and trade-offs of hypermetabolism in human motor neurons with ATP synthase deficiency.

Journal: Communications biology

Status: code on request

[9881] doi:10.1038/s42003-025-09299-8 [paper, repository]

Functional differentiation and interactions among inferior, medial frontal and posterior temporal cortex in semantic control.

Journal: Communications biology

Authors' code: zaixucui/pattern_regression_matlab (no license), thomasyeolab/cbig (MIT), Zenodo 17623952 (CC-BY-4.0), yuanbinke/semantic_control (no license)

Status: code verified, 2,107 files readable, 6 matches

[9882] doi:10.1038/s42003-025-09336-6 [paper, repository]

Layer-specific cortical dynamics during transitions from error monitoring to decision execution in reversal learning.

Journal: Communications biology

Authors' code: CortXplorer/Acun_et-al (no license)

Status: dead link

[9883] doi:10.1038/s44319-025-00664-6 [paper]

Conserved lipid metabolic reprogramming confers hypoxic and aging resilience.

Journal: EMBO reports

Status: data only

[9884] doi:10.1073/pnas.2507417122 [paper, repository]

Building hierarchically nested structure by rapid neural sequences.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF q8s4b (no license)

Status: code verified

[9885] doi:10.1126/science.aeb3577 [paper, data]

Structure and organization of AMPA receptor-TARP complexes in the mammalian cerebellum.

Journal: Science (New York, N.Y.)

Status: data only, 1 dataset cited

[9886] doi:10.1162/imag.a.1043 [paper, repository]

Comparing the effect of multi-gradient echo and multi-band fMRI during a semantic task.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: AjayHalai/Sensitivity_of_MEMB (CC0-1.0), mrc-cbu/riksneurotools (GPL-3.0), DrMichaelLindner/MAP4SL (CC-BY-4.0)

Status: code verified, 89 files readable, 18 matches

[9887] doi:10.1162/imag.a.1050 [paper, repository]

Post-stroke cognitive impairment: More than a lesion-symptom model.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF mv2qf (no license), figshare 28387994 (CC-BY-4.0)

Status: code verified, 48 files readable, 7 matches

[9888] doi:10.1162/imag.a.1060 [paper]

The link to steady-state oxidative metabolism and hemodynamics varies across rs-fMRI metrics: A whole-brain assessment using macrovascular correction.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[9889] doi:10.1177/11795972251395954 [paper, repository]

Hybrid Deep Learning for Brain Tumor Detection: Combining DenseNet and Custom CNN for Enhanced Accuracy.

Journal: Biomedical engineering and computational biology

Authors' code: Almas3007/BrainTumor (no license)

Status: code verified, 4 files readable, 3 matches

[9890] doi:10.1186/s12864-025-12201-9 [paper, repository]

An updated and spatially validated somatic single-cell atlas of Hydractinia symbiolongicarpus.

Journal: BMC genomics

Authors' code: sjwu571/HyS_scRNAseq (no license)

Status: code verified, 27 files readable, 27 matches

[9891] doi:10.1186/s12989-025-00650-9 [paper, data]

Sleep disruption from inhalation of biomass smoke: a basis for coincident hypertension?

Journal: Particle and fibre toxicology

Status: data only, 1 dataset cited

[9892] doi:10.1186/s42492-025-00208-8 [paper, data]

Comprehensive review of machine learning and deep learning techniques for epileptic seizure detection and prediction based on neuroimaging modalities.

Journal: Visual computing for industry, biomedicine, and art

Status: data only, 4 datasets cited

[9893] doi:10.1192/bjp.2025.10482 [paper, repository]

Medication and atypical brain maturation in psychosis associated with long-term cognitive decline and symptom progression.

Journal: The British journal of psychiatry : the journal of mental science

Authors' code: brainchart/Lifespan (no license), RafaelRomeroGarcia/cca_pls_toolkit (GPL-3.0), RafaelRomeroGarcia/LongitudinalCentilesFEP (GNU)

Status: code verified, 138 files readable, 4 matches

[9894] doi:10.1371/journal.pone.0338730 [paper, repository]

The effects of 12 weeks of chiropractic spinal adjustments on physiological biomarkers in adults: A pragmatic randomized controlled trial.

Journal: PloS one

Authors' code: supp:PMC12697962/pone.0338730.s001.zip (no license)

Status: empty repository

[9895] doi:10.3389/fbinf.2025.1684227 [paper, repository]

Celline: a flexible tool for one-step retrieval and integrative analysis of public single-cell RNA sequencing data.

Journal: Frontiers in bioinformatics

Authors' code: Kataoka-K-Lab/Celline (MIT), Zenodo 17274556 (MIT)

Status: code verified, 292 files readable, 18 matches

[9896] doi:10.3390/biomimetics10120830 [paper, data]

Animal Species Classification from Vocalizations Using Cochlear-Inspired Audio Features and Machine Learning.

Journal: Biomimetics (Basel, Switzerland)

Status: data only, 1 dataset cited

[9897] doi:10.64898/2025.12.09.693141 [paper, repository]

Inter- and intra-individual differences in brain sex map to neuroendocrine profiles

Journal: bioRxiv (preprint)

Authors' code: gloriamatte (no license)

Status: code verified

[9898] doi:10.64898/2025.12.09.693169 [paper, repository]

Corticofugal gated recurrency captures auditory cortical responses

Journal: bioRxiv (preprint)

Authors' code: neuralml/pytorch-subLSTM (MIT), lm1017/corticofugal-LSTM (no license), miltonllera/pytorch-subLSTM (MIT)

Status: code verified, 76 files readable, 12 matches

[9899] doi:10.64898/2025.12.09.693191 [paper, data]

Insular cortex predictions regulate glucose homeostasis

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[9900] doi:10.7554/elife.91427 [paper, repository]

A single-cell transcriptomic atlas reveals resident dendritic-like cells in the zebrafish brain parenchyma.

Journal: eLife

Authors' code: rulatt/scAtlas_Zebrafish (MIT)

Status: code verified, 4 files readable

Wednesday, 10 December 2025 (46 papers)

[9901] doi:10.1007/s12035-025-05604-y [paper, data]

Mitochondrial Transplantation Increases Bioenergetics and Neurite Outgrowth in Healthy and P301Ltau-Expressing SH-SY5Y Cells.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[9902] doi:10.1007/s12035-025-05608-8 [paper, data]

Unraveling Cannabidiol's Dual Modulatory Role in Schizophrenia: Network Pharmacology and In Vivo Validation of Neuroinflammatory and Behavioral Modulation.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[9903] doi:10.1016/j.ebiom.2025.106062 [paper, repository]

Sex-specific interaction effects of Syntaxin 1A coexpression network and childhood trauma on adult depressive symptoms.

Journal: EBioMedicine

Authors' code: mrcieu.github.io/twosamplemr (no license), SilveiraLab (no license)

Status: code verified

[9904] doi:10.1016/j.ebiom.2025.106076 [paper, data]

Identification of genes underlying nigrostriatal iron accumulation: transcriptome-wide association study of iron-sensitive brain MRI.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[9905] doi:10.1016/j.tjnut.2025.101267 [paper, data]

Maternal Sucrose Intake during Pregnancy Alone Disrupts Testosterone and Allopregnanolone Levels in the Fetal Brain of Rats.

Journal: The Journal of nutrition

Status: data only, 1 dataset cited

[9906] doi:10.1021/acschemneuro.5c00712 [paper, data]

(±)-2-Cyclohexyl-5-methoxy-2H-chromene, a Synthetic 5-Methoxyflavone Derivative, Is a Selective DNA Polymerase-β Inhibitor with Neuroprotective Activity against β-Amyloid Toxicity.

Journal: ACS chemical neuroscience

Status: data only, 2 datasets cited

[9907] doi:10.1038/s41398-025-03790-w [paper]

Modulation of suicide-related neural circuits by transcranial magnetic stimulation and its role in reducing suicide risk.

Journal: Translational psychiatry

Status: code on request

[9908] doi:10.1038/s41420-025-02886-y [paper, data]

Sympathetic nerve inhibition enhances calvarial bone repair via senescent macrophage-induced osteogenesis and angiogenesis.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[9909] doi:10.1038/s41467-025-66146-4 [paper, data]

Seed amplification of MSA alpha-synuclein aggregates preserves the biological and structural properties of brain-derived aggregates.

Journal: Nature communications

Status: data only, 1 dataset cited

[9910] doi:10.1038/s41467-025-66254-1 [paper, data]

Structural basis of calcium-dependent C1ql1/BAI3 assemblies in synaptic connectivity.

Journal: Nature communications

Status: data only, 2 datasets cited

[9911] doi:10.1038/s41467-025-66387-3 [paper, repository]

Enhanced neural plasticity in monkey TE compared to TEO during learning of a feature-ambiguous visual categorization task.

Journal: Nature communications

Authors' code: figshare 29896067 (CC-BY-4.0)

Status: code verified, 1 file readable

[9912] doi:10.1038/s41467-025-66396-2 [paper, repository]

Learning from imagined experiences via an endogenous prediction error.

Journal: Nature communications

Authors' code: OSF q3v6b (no license)

Status: code verified, 34 files readable, 15 matches

[9913] doi:10.1038/s41467-025-67054-3 [paper, repository]

The balance between stability and plasticity of the visual word form area in dyslexia.

Journal: Nature communications

Authors' code: jamielmitchell/Mitchell_TraitStateVWFA_2025 (MIT)

Status: code verified, 15 files readable, 1 match

[9914] doi:10.1038/s41467-025-67380-6 [paper]

Cross-spatial scale processing of hierarchical auditory sequences in human brains revealed using 7 T magnetic resonance imaging.

Journal: Nature communications

Status: code on request

[9915] doi:10.1038/s41531-025-01231-5 [paper, data]

Cognitive reserve, frailty status, and risk of neurodegenerative diseases: a prospective cohort study.

Journal: NPJ Parkinson's disease

Status: code on request, 1 dataset cited

[9916] doi:10.1038/s41586-025-09820-3 [paper, repository]

Mapping the genetic landscape across 14 psychiatric disorders.

Journal: Nature

Authors' code: GenomicSEM/GenomicSEM (GPL-3.0), rdocumentation.org/packages/stats (no license), precimed/mixer (GPL-3.0), josefin-werme/LAVA (no license), wouterpeyrot/CCGWAS (no license), cran.r-project.org/web/packages (no license), toppgene.cchmc.org (no license), nathanskene.github.io/ewce (no license), neurogenomics.github.io/magma_celltyping (no license)

Status: code verified, 62 files readable, 13 matches

[9917] doi:10.1038/s41593-025-02134-7 [paper, repository]

Electrophysiological classification of human layer 2-3 pyramidal neurons reveals subtype-specific synaptic interactions.

Journal: Nature neuroscience

Authors' code: figshare 28184126 (GPL 3.0+)

Status: code verified, 119 files readable, 38 matches

[9918] doi:10.1038/s41597-025-06233-9 [paper, repository]

An fNIRS hyperscanning dataset on the modulation of synchrony by social relationship during social touch.

Journal: Scientific data

Authors' code: OSF sm7yt (no license)

Status: code verified, 12 files readable, 4 matches

[9919] doi:10.1038/s41598-025-30848-y [paper, repository]

Critical role of EEG signals in assessment of sex-specific insights in neurological diagnostics via machine learning approach.

Journal: Scientific reports

Authors' code: JavadBayazi/AURA-EEG (no license)

Status: code verified, 11 files readable, 7 matches

[9920] doi:10.1038/s41598-025-31768-7 [paper]

Fractional-order stochastic delayed neural networks with impulses: mean square finite-time contractive synchronization.

Journal: Scientific reports

Status: code on request

[9921] doi:10.1038/s41598-025-31852-y [paper, data]

Effectiveness of treadmill-based virtual-reality biofeedback training to improve gait function in children and adolescents with congenital and acquired brain injury.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9922] doi:10.1038/s44319-025-00647-7 [paper]

Cerebral organoids expressing mutant actin genes reveal cellular mechanism underlying microcephaly.

Journal: EMBO reports

Status: data only

[9923] doi:10.1073/pnas.2516279122 [paper, repository]

Distinct neural dynamics in the ventral hippocampus and medial prefrontal cortex during social information processing.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: YangZhanLab/hippocampus-prefrontal-social-information (Apache-2.0)

Status: code verified, 7 files readable, 3 matches

[9924] doi:10.1093/braincomms/fcaf483 [paper, repository]

Progression of fragile X-associated tremor/ataxia syndrome revealed by subtype and stage inference.

Journal: Brain communications

Authors' code: UCD-IDDRC/fxtas (other)

Status: code verified, 484 files readable, 20 matches

[9925] doi:10.1093/braincomms/fcaf486 [paper, repository]

The impact of pain on memory: a study in chronic low back pain and migraine patients.

Journal: Brain communications

Authors' code: OSF sk26g (no license)

Status: code verified, 5 files readable, 7 matches

[9926] doi:10.1126/sciadv.ads5703 [paper, repository]

Evaluating the effects of archaic protein-altering variants in living human adults.

Journal: Science advances

Authors' code: Zenodo 16912130 (CC-BY-4.0), gitlab.gwdg.de/barmol/fixedvariant (no license)

Status: code verified, 20 files readable, 4 matches

[9927] doi:10.1126/sciadv.adv0431 [paper, data]

From sensory to perceptual manifolds: The twist of neural geometry.

Journal: Science advances

Status: data only, 1 dataset cited

[9928] doi:10.1126/sciadv.adz4143 [paper, repository]

Dynamic brain mechanisms supporting salient memories under cortisol.

Journal: Science advances

Authors' code: Zenodo 17253770 (CC-BY-4.0), floryhyy/dcpm_cortmem (no license)

Status: code verified, 25 files readable, 2 matches

[9929] doi:10.1136/bmjopen-2025-106149 [paper, repository]

Protocol for a prospective observational study linking research domain criteria-based phenotypes with clinical and care-related outcomes in psychiatric patients and healthy controls: the VeRDoC study.

Journal: BMJ open

Authors' code: OSF u9fpw (no license)

Status: empty repository

[9930] doi:10.1162/imag.a.1031 [paper, repository]

Multiscale modes of functional brain connectivity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: thomasyeolab/cbig (MIT), git.fmrib.ox.ac.uk/profumo/profumo (no license), git.fmrib.ox.ac.uk/profumo/pfm_simulations (no license)

Status: code verified, 2,000 files readable, 4 matches

[9931] doi:10.1162/imag.a.1046 [paper, repository]

A double-blind replication attempt of offline 5Hz-rTUS-induced corticospinal excitability.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF s5ag6 (no license), ucl-bug/k-plan-matlab-tools (MIT)

Status: code verified, 17 files readable, 9 matches

[9932] doi:10.1186/s11689-025-09664-y [paper, data]

Emotion regulation in autistic adolescents: a mixed methods systematic review.

Journal: Journal of neurodevelopmental disorders

Status: data only, 2 datasets cited

[9933] doi:10.1186/s12935-025-04112-2 [paper, data]

CYP27A1 suppresses brain metastasis via ferroptosis in lung adenocarcinoma: a six-gene signature predicting the immunotherapy response and clinical outcomes.

Journal: Cancer cell international

Status: data only, 1 dataset cited

[9934] doi:10.1186/s12935-025-04114-0 [paper, data]

Ferroptosis resistance-related TEP1 as a novel prognostic biomarker involved in immune cell infiltration and tumour progression in glioblastoma.

Journal: Cancer cell international

Status: data only, 1 dataset cited

[9935] doi:10.1186/s12974-025-03572-7 [paper, repository]

Acute neuroinflammation induces prolonged transcriptional reprogramming in microglia.

Journal: Journal of neuroinflammation

Authors' code: Mervyism (no license)

Status: code verified

[9936] doi:10.1186/s12987-025-00743-9 [paper, repository]

Imaging blood to periarterial CSF flow coupling using 4D flow MRI and an ultra-high-performance head-only gradient system.

Journal: Fluids and barriers of the CNS

Authors' code: uwmri/QVT (BSD-2-Clause)

Status: code verified, 22 files readable, 4 matches

[9937] doi:10.1186/s13018-025-06500-w [paper, data]

MiR499-5P loaded MSC derived exosomes affect oxidative stress and inflammatory response after spinal cord injury by targeting genes.

Journal: Journal of orthopaedic surgery and research

Status: data only, 1 dataset cited

[9938] doi:10.1371/journal.pone.0337087 [paper, repository]

Modulatory feedback determines attentional object segmentation in a model of the ventral stream.

Journal: PloS one

Authors' code: williford/seg-mnist-dataset (AGPL-3.0), PPthe2nd/DeepSegm (MIT), colab.research.google.com/drive/13o0-4uyq3l1tzupvn-nlp8c-wvakajcg (no license)

Status: code verified, 32 files readable, 3 matches

[9939] doi:10.1371/journal.pone.0338262 [paper, repository]

The eye, a spy hole on human mind: Spontaneous blink rate and amplitude, and their variability, as new psychobiological markers of anxiety.

Journal: PloS one

Authors' code: alontom/Eye-Blink-Anxiety (no license)

Status: code verified, 2 files readable, 1 match

[9940] doi:10.1523/eneuro.0065-25.2025 [paper, repository]

In Vivo Analysis of Medial Perforant Path-Evoked Excitation and Inhibition in Dentate Granule Cells.

Journal: eNeuro

Authors' code: IEECR/In-vivo-analysis-of-medial-perforant-path-evoked-excitation-and-inhibition-in-dentate-granule-cells (GPL-3.0)

Status: code verified, 46 files readable, 3 matches

[9941] doi:10.1523/jneurosci.0508-25.2025 [paper, repository]

Experience-Dependent Plasticity to Visual Sequences in Mouse Anterior Cingulate Cortex Reflects Familiarity.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: jeffgavornik/VEPStimulusSuite (no license), jeffgavornik/VEPAnalysisSuite (MIT)

Status: code verified, 606 files readable, 1 match

[9942] doi:10.3389/fimmu.2025.1727298 [paper, data]

COL8A1 as a pro-inflammatory mediator bridges immune evasion and therapy resistance in glioma.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[9943] doi:10.3389/fnbeh.2025.1689016 [paper, data]

The non-nuclear DifB NF-κB isoform affects courtship, circadian, and locomotor behavior in adult <i>Drosophila melanogaster</i>.

Journal: Frontiers in behavioral neuroscience

Status: data only, 1 dataset cited

[9944] doi:10.3389/fphys.2025.1708686 [paper, data]

Tmem45b modulates itch via endoplasmic reticulum calcium regulation.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[9945] doi:10.3758/s13415-025-01371-4 [paper, repository]

Effect of emotion on hippocampal-dependent associative binding through the lens of the weather prediction task.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF das37 (no license)

Status: code verified, 39 files readable, 5 matches

[9946] doi:10.7554/elife.107540 [paper, repository]

Longitudinal tracking of neuronal activity from the same cells in the developing brain using Track2p.

Journal: eLife

Authors' code: track2p.github.io/home.html (no license), juremaj/track2p (GPL-3.0), basler/pypylon (BSD-3-Clause), track2p.github.io/run_inputs_and_parameters (no license)

Status: code verified, 263 files readable, 3 matches

Tuesday, 9 December 2025 (44 papers)

[9947] doi:10.1002/advs.202512413 [paper, repository]

Induced Proprioceptor and Low-Threshold Mechanoreceptor Neurons Derived from Human Pluripotent Stem Cells Exhibit Distinct Functional Mechanosensory Properties.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Zenodo 7460899 (other-open), nmarzano/peakfinding_patchclamping_calcium-imaging (no license)

Status: code verified, 10 files readable

[9948] doi:10.1007/s12672-025-04121-7 [paper, data]

Cell cycle-related biomarker lineage promotes the malignant progression of recurrent IDH wild-type glioma.

Journal: Discover oncology

Status: data only, 1 dataset cited

[9949] doi:10.1016/j.celrep.2025.116655 [paper, repository]

Age- and cell-type-specific effects of histone variant H2BE in the brain.

Journal: Cell reports

Authors' code: shenlab-sinai/ngsplot (CC-BY-NC-SA-4.0), jinworks/CellChat (GPL-3.0)

Status: code verified, 63 files readable, 4 matches

[9950] doi:10.1016/j.gendis.2025.101969 [paper, repository]

Spatial transcriptomics revealed the regulatory role of CCN1 to microglia distribution through region-specific cellular interactions.

Journal: Genes & diseases

Authors' code: saeyslab/nichenetr (no license)

Status: code verified, 61 files readable, 7 matches

[9951] doi:10.1016/j.isci.2025.114371 [paper, repository]

Transient neurovascular coupling impairment in brain penetrating arterioles of streptozotocin treated mice post recurrent nonsevere hypoglycemia.

Journal: iScience

Authors' code: mostanylab/NVC (no license), Zenodo 17541129 (CC-BY-4.0)

Status: code verified, 10 files readable

[9952] doi:10.1016/j.isci.2025.114373 [paper, repository]

Fully automated Res3DNet model to predict IDH mutation of gliomas from whole-brain MRI free of tumor segmentation.

Journal: iScience

Authors' code: YLiu-nju/Res3DNet (no license)

Status: code verified, 7 files readable

[9953] doi:10.1016/j.isci.2025.114381 [paper]

Early-life cognitive intervention preserves brain function in aged TgF344-AD rats with sex-specific effects.

Journal: iScience

Status: code on request

[9954] doi:10.1016/j.isci.2025.114395 [paper, repository]

Locomotion selectively enhances visual speed encoding in mouse medial higher visual areas.

Journal: iScience

Authors' code: eabhorrocks/HorrocksSaleem_AllenVisSpeed (MIT), Zenodo 17512798 (MIT)

Status: code verified, 113 files readable, 16 matches

[9955] doi:10.1016/j.jbc.2025.111031 [paper, repository]

Minimal actin cortices: The αD-helix of ezrin's C-ERMAD governs F-actin binding.

Journal: The Journal of biological chemistry

Authors' code: AKSteinem (no license)

Status: code verified

[9956] doi:10.1016/j.molmet.2025.102300 [paper, repository]

Sustained diabetes remission induced by FGF1 involves a shift in transcriptionally distinct AgRP neuron subpopulations.

Journal: Molecular metabolism

Authors' code: perslab/Aalling-Todorov-Hassan-2025 (no license), Zenodo 8131648 (other-open), pvtodorov/resolve2xe (MIT)

Status: code verified, 10 files readable, 2 matches

[9957] doi:10.1016/j.omton.2025.201108 [paper]

MicroRNA-138 regulation promotes the efficacy of oncolytic herpes virus G47Δ for malignant brain tumor therapy.

Journal: Molecular therapy. Oncology

Status: code on request

[9958] doi:10.1016/j.xhgg.2025.100555 [paper, repository]

Lack of association between G6PD variants and Parkinson disease.

Journal: HGG advances

Authors' code: gan-orlab/G6PD-on-PD (no license)

Status: empty repository, 1 file readable

[9959] doi:10.1016/j.ynirp.2025.100307 [paper, repository]

Altered structural networks and cognitive functioning in long-term survivors of pediatric brain tumors.

Journal: Neuroimage. Reports

Authors' code: OSF 7t3xu (no license), OSF aqm3s (no license)

Status: code verified, 6 files readable, 9 matches

[9960] doi:10.1038/s41467-025-65958-8 [paper, data]

Epigenetic regulation of cocaine intake through dopaminergic control of cholinergic interneurons in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[9961] doi:10.1038/s41467-025-65964-w [paper, repository]

Prime editing of the β<sub>1</sub> adrenoceptor in the brain restores physiological REM sleep in a mouse model of Alzheimer's disease.

Journal: Nature communications

Authors' code: ETHZ-INS/DLCAnalyzer (GPL-3.0)

Status: code verified, 9 files readable, 1 match

[9962] doi:10.1038/s41467-025-66669-w [paper, repository]

State-space kinetic Ising model reveals task-dependent entropy flow in sparsely active nonequilibrium neuronal dynamics.

Journal: Nature communications

Authors' code: KenIshihara-17171ken/Non_equ (no license), Zenodo 17504162 (CC-BY-4.0)

Status: code verified, 22 files readable, 8 matches

[9963] doi:10.1038/s41467-025-66838-x [paper, repository]

Dynamic changes in chloride homeostasis coordinate midbrain inhibitory network activity during reward learning.

Journal: Nature communications

Authors' code: aolabgeorgetown/ostroumovlab (no license)

Status: code verified, 2 files readable

[9964] doi:10.1038/s41467-025-67270-x [paper, data]

Functional KCC2 expression marks an evolutionarily conserved population of early-maturing interneurons in the perinatal cortex.

Journal: Nature communications

Status: data only, 1 dataset cited

[9965] doi:10.1038/s41539-025-00388-1 [paper]

Neural mechanisms underpinning the association between visual arts education and creativity.

Journal: NPJ science of learning

Status: code on request

[9966] doi:10.1038/s41592-025-02925-7 [paper, repository]

FACED 2.0 enables large-scale voltage and calcium imaging in vivo.

Journal: Nature methods

Authors' code: JiLabUCBerkeley/FACED2PFM2p0-analysis (GPL-3.0)

Status: empty repository, 2 files readable

[9967] doi:10.1038/s41597-025-06384-9 [paper, data]

A Multimodal Virtual Reality Data Acquisition Platform and Dataset to Assess Systemic Human Cognitive States.

Journal: Scientific data

Status: data only, 1 dataset cited

[9968] doi:10.1038/s41598-025-29442-z [paper, repository]

RHO GTPase by L1 GABAergic neurons in frontal cortex and L6 glutamatergic neurons in prefrontal cortex differentiates states of unconsciousness.

Journal: Scientific reports

Authors' code: tagtag/Sleep_vs_anesthesia (no license)

Status: code verified, 2 files readable, 1 match

[9969] doi:10.1038/s42003-025-09270-7 [paper]

Single cell spatial profiling of the matrisome identifies region-specific adhesion and signaling networks in glioblastoma.

Journal: Communications biology

Status: code on request

[9970] doi:10.1038/s44321-025-00350-z [paper, repository]

Channelrhodopsin variants for high-rate optogenetic neurostimulation at low light intensities.

Journal: EMBO molecular medicine

Authors' code: Zenodo 15210800 (CC-BY-4.0), Zenodo 17458418 (CC-BY-4.0)

Status: code verified

[9971] doi:10.1073/pnas.2424400122 [paper, data]

Three distinct components of pragmatic language use: Social conventions, intonation, and world knowledge-based causal reasoning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[9972] doi:10.1073/pnas.2513989122 [paper, data]

HLA-DQB1*03:01 strongly affects age of onset of type 1 narcolepsy independently of DQA1 and ethnicity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[9973] doi:10.1080/07853890.2025.2599059 [paper, data]

Sleep fragmentation exacerbates myocardial ischemia-reperfusion injury via hypothalamic paraventricular nucleus-resident OX1R-mediated sympathetic hyperactivity in adult mice.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[9974] doi:10.1093/braincomms/fcaf478 [paper, repository]

Accelerated forgetting in presymptomatic Alzheimer's: mediation by prefrontal cortical degeneration.

Journal: Brain communications

Authors' code: csparker/parker-braincomms25-neuroanatomicalcorrelates (no license)

Status: code verified, 7 files readable, 7 matches

[9975] doi:10.1109/ojemb.2025.3642070 [paper, repository]

Graph Attention Networks for Detecting Epilepsy From EEG Signals Using Accessible Hardware in Low-Resource Settings.

Journal: IEEE open journal of engineering in medicine and biology

Authors' code: alecrimi/eeg_nigeria_guinea (no license)

Status: code verified, 4 files readable, 7 matches

[9976] doi:10.1152/jn.00442.2025 [paper, data]

To jump or not to jump: comparing effects of phenotypic plasticity on the visual responses and escape behavior of locusts and grasshoppers.

Journal: Journal of neurophysiology

Status: data only, 2 datasets cited

[9977] doi:10.1159/000549940 [paper, data]

A Cavernous Sinus Meningioma in a Child with Progressive Bilateral Visual Loss Ultimately Attributed to Unsuspected Optic Nerve Sheath Meningiomas.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[9978] doi:10.1162/imag.a.1053 [paper]

Fully individualized models for cross-sectional and longitudinal network-based tau spread.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[9979] doi:10.1162/imag.a.948 [paper, repository]

<i>TORTOISEV4</i>: Reimagining the NIH diffusion MRI processing pipeline.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: QMICodeBase/TORTOISEV4 (GPL-3.0)

Status: code verified, 159 files readable, 4 matches

[9980] doi:10.1172/jci198531 [paper, repository]

Vinculin influences essential processes in enteric nervous system development and Hirschsprung disease pathogenesis.

Journal: The Journal of clinical investigation

Authors' code: ellylab/Vcl-ENS (no license)

Status: code verified, 3 files readable, 5 matches

[9981] doi:10.1186/s13054-025-05789-7 [paper, data]

The molecular architecture of severe pediatric traumatic brain injury: integrated omics reveal therapeutic pathways.

Journal: Critical care (London, England)

Status: data only, 2 datasets cited

[9982] doi:10.3389/fcvm.2025.1623644 [paper, data]

Cardiovascular safety pharmacology: beyond arrhythmic risk assessment.

Journal: Frontiers in cardiovascular medicine

Status: data only, 1 dataset cited

[9983] doi:10.3389/fnhum.2025.1698605 [paper, data]

Retraining dorsal visual pathways improves cognitive skills and executive control networks following mild traumatic brain injury.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[9984] doi:10.3389/fnimg.2025.1671310 [paper, repository]

Brain plasticity underlying acquisition of new organizational skills in children: A Rashomon analysis.

Journal: Frontiers in neuroimaging

Authors' code: luisagulleiro/OrganizationalSkillsTraining (no license)

Status: empty repository

[9985] doi:10.3389/fonc.2025.1676103 [paper, data]

Sialylation-related gene signature predict prognosis and immunotherapy efficacy in low- and high-grade glioma: a PCA-based stratification study.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[9986] doi:10.64898/2025.12.05.692533 [paper, repository]

Identification of cell types associated with 14 brain phenotypes from more than 10 million single cells

Journal: bioRxiv (preprint)

Authors' code: tanyaphung/scrnaseq_viewer (MIT), tanyaphung/brain_celltypes (MIT), tanyaphung/FUMA_Celltype_cmd (MIT)

Status: code verified, 93 files readable, 7 matches

[9987] doi:10.64898/2025.12.05.692595 [paper, data]

Multiscale brain-wide mapping of α-synuclein-driven dopaminergic degeneration and white matter impairment in α-synucleinopathy mice

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[9988] doi:10.64898/2025.12.07.692806 [paper, repository]

Brain-wide synaptosome profiling reveals localized mRNAs that diversify synapses

Journal: bioRxiv (preprint)

Authors' code: gitlab.mpcdf.mpg.de/mpibr/schu/synaptosort (no license), gitlab.mpcdf.mpg.de/mpibr/schu/passfinder (GPL-3.0), edmond.mpg.de (no license)

Status: code verified, 9 files readable, 1 match

[9989] doi:10.64898/2025.12.07.692889 [paper, repository]

Exploration of RNA outside segmented cells in spatial transcriptomics reveals extrasomatic RNA organization

Journal: bioRxiv (preprint)

Authors' code: theislab/troutpy (BSD-3-Clause), troutpy.readthedocs.io (no license), theislab/troutpy_reproducibility (BSD-3-Clause)

Status: code verified, 96 files readable, 20 matches

[9990] doi:10.7554/elife.107223 [paper, repository]

Human neurocomputational mechanisms of guilt-driven and shame-driven altruistic behavior.

Journal: eLife

Authors' code: OSF sve7h (no license)

Status: code verified

Monday, 8 December 2025 (37 papers)

[9991] doi:10.1002/advs.202417721 [paper, data]

Metformin Restores Mitochondrial Function and Neurogenesis in POLG Patient-Derived Brain Organoids.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[9992] doi:10.1002/advs.202506695 [paper, repository]

Modifying Glucose Metabolism Reverses Memory Defects of Alzheimer's Disease Model at Late Stages.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: tyyl622/admouse (no license)

Status: code verified, 4 files readable, 4 matches

[9993] doi:10.1002/advs.202512499 [paper, repository]

Microglial Fkbp5 Impairs Post-Stroke Vascular Integrity and Regeneration by Promoting Yap1-Mediated Glycolysis and Oxidative Phosphorylation.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: MGI-tech-bioinformatics/DNBelab_C_Series_scRNA-analysis-software (MIT)

Status: code verified, 9 files readable, 2 matches

[9994] doi:10.1007/s12035-025-05475-3 [paper, repository]

Expression, Subcellular Localization, and Mechanistic Analysis of Intellectual Disability Syndrome Protein ABBA.

Journal: Molecular neurobiology

Authors' code: laurilahti/neural-image-brightness-cluster-analysis-script (CC-BY-4.0)

Status: code verified, 4 files readable, 6 matches

[9995] doi:10.1016/j.ynirp.2025.100306 [paper, repository]

Using, misusing, and improving online machine learning-based meta-analysis of neuroimaging published data: A perspective on NeuroQuery.

Journal: Neuroimage. Reports

Authors' code: NICER-Lab/ml-neuroimaging-meta-analysis-challenges (MIT)

Status: code verified, 6 files readable

[9996] doi:10.1038/s41401-025-01690-9 [paper, data]

Modest improvement of metabolic and behavioral deficits with long-term ambroxol treatment in a Pink1<sup>-/-</sup>SNCA<sup>A53T</sup> double mutant mouse model of Parkinson's disease.

Journal: Acta pharmacologica Sinica

Status: data only, 1 dataset cited

[9997] doi:10.1038/s41531-025-01232-4 [paper, repository]

Brain age gap as predictor of disease progression in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: t-haehnel/Brainage-PD-Progression (MIT), juaml/brainage_estimation (no license)

Status: code verified, 46 files readable, 19 matches

[9998] doi:10.1038/s41551-025-01536-z [paper, repository]

Long-term unsupervised recalibration of cursor-based intracortical brain-computer interfaces using a hidden Markov model.

Journal: Nature biomedical engineering

Authors' code: guyhwilson/nonstationarities (no license), guyhwilson/PRI-T (other)

Status: code verified, 25 files readable, 4 matches

[9999] doi:10.1038/s41597-025-06203-1 [paper, data]

An EEG dataset to study neural correlates of audiovisual long-term memory retrieval.

Journal: Scientific data

Status: code on request, 1 dataset cited

[10000] doi:10.1038/s41597-025-06213-z [paper, repository]

An open dataset of multidimensional signals based on different speech patterns in pragmatic Mandarin.

Journal: Scientific data

Authors' code: cstr.cn/31253.11.sciencedb.24416 (no license)

Status: code verified

[10001] doi:10.1038/s41597-025-06346-1 [paper, repository]

3M-CPSEED, An EEG-based Dataset for Chinese Pinyin Production in Overt, Mouthed, and Imagined Speech.

Journal: Scientific data

Authors' code: XinyuM-OvO/3M-CPSEED (no license)

Status: code verified, 8 files readable, 4 matches

[10002] doi:10.1038/s41598-025-27275-4 [paper, repository]

Structurally constrained functional connectivity reveals efficient visuomotor decision-making mechanisms in action video gamers.

Journal: Scientific reports

Authors' code: OSF 8utzc (no license)

Status: code verified, 18 files readable, 5 matches

[10003] doi:10.1038/s41598-025-28376-w [paper, data]

Intelligent retinal disease detection using deep learning.

Journal: Scientific reports

Status: data only, 14 datasets cited

[10004] doi:10.1038/s41598-025-30392-9 [paper, repository]

Integrative gene co-expression network analysis reveals protein-coding and LncRNA genes associated with Alzheimer's disease pathology.

Journal: Scientific reports

Authors' code: mpstar92/Shiny_App_ADnet (no license), Tima-Ze/AD_network (MIT)

Status: code verified, 31 files readable, 9 matches

[10005] doi:10.1038/s41598-025-31136-5 [paper]

Instructional modality influences neurocognitive engagement during moral learning.

Journal: Scientific reports

Status: code on request

[10006] doi:10.1038/s41598-025-31783-8 [paper, repository]

Simulation-assisted multimodal deep learning (Sim-MDL) fusion models for the evaluation of thermal barrier coatings using infrared thermography and Terahertz imaging.

Journal: Scientific reports

Authors' code: SKrishkp/Sim-MDL (no license)

Status: code verified, 3 files readable

[10007] doi:10.1038/s41746-025-02161-5 [paper, repository]

Deep learning-based brain age predicts stroke recurrence in acute ischemic cerebrovascular disease.

Journal: NPJ digital medicine

Authors' code: liuziyang1106/MBA_Net_for_ContexualBrainAge (no license)

Status: code verified, 15 files readable, 5 matches

[10008] doi:10.1038/s44319-025-00653-9 [paper, data]

A low-level Cdkn1c/p57<sup>kip2</sup> expression in spinal progenitors drives the transition from proliferative to neurogenic modes of division.

Journal: EMBO reports

Status: data only, 2 datasets cited

[10009] doi:10.1073/pnas.2513076122 [paper, data]

Combination of Cas9 and adeno-associated vectors enables efficient in vivo knockdown of precise miRNAs in the rodent and primate brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[10010] doi:10.1073/pnas.2527641122 [paper, data]

Galectin-related protein, a key contributor, drives diabetes-associated neuropathic pain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[10011] doi:10.1080/01621459.2025.2563189 [paper, repository]

Bayesian Signal Matching for Transfer Learning in ERP-Based Brain Computer Interface.

Journal: Journal of the American Statistical Association

Authors' code: NiubilityDiu/Bayesian-Signal-Matching-JASA (MIT)

Status: code verified, 68 files readable, 7 matches

[10012] doi:10.1080/07853890.2025.2598930 [paper, data]

Predictive value of motor-evoked potentials for upper limb functional outcomes in acute ischemic stroke.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[10013] doi:10.1093/braincomms/fcaf480 [paper, data]

Transcranial direct current stimulation over the frontal eye field has no effect on visual search performance.

Journal: Brain communications

Status: data only, 1 dataset cited

[10014] doi:10.1111/acel.70305 [paper, repository]

Atavistic Genetic Expression Dissociation (AGED) During Aging: Meta-Phylostratigraphic Evidence of Cellular and Tissue-Level Phylogenetic Dissociation.

Journal: Aging cell

Authors' code: LPioL/atavisticDissociation (MIT)

Status: code verified, 3 files readable, 2 matches

[10015] doi:10.1111/jnp.70026 [paper, repository]

Animal fluency in people with Parkinson's disease: Item-based performance before and after deep brain stimulation surgery.

Journal: Journal of neuropsychology

Authors' code: OSF h2jtg (no license)

Status: code verified, 7 files readable, 5 matches

[10016] doi:10.1152/function.084.2025 [paper, data]

Orexin facilitates the peripheral chemoreflex in the active phase via corticotropin-releasing hormone neurons that project to the nucleus of the solitary tract.

Journal: Function (Oxford, England)

Status: data only, 1 dataset cited

[10017] doi:10.1159/000549822 [paper, data]

Utilizing the DMN and DAN to Study the Effects of Acupuncture on Patients with Cognitive Impairment in Long COVID: A Pragmatic Randomized Controlled Trial Protocol.

Journal: Complementary medicine research

Status: data only, 1 dataset cited

[10018] doi:10.1159/000549847 [paper, data]

Peripheral T-Cell Lymphoma Mimicking Chronic Lymphocytic Inflammation with Pontine Perivascular Enhancement Responsive to Steroids: A Case Report with Confirmatory Brain Biopsy and Longitudinally Extensive Transverse Myelitis.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[10019] doi:10.1159/000549960 [paper, data]

Effect of Transcranial Direct Current Stimulation on Motor Speech in Nonfluent Primary Progressive Aphasia: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[10020] doi:10.1162/imag.a.1052 [paper, repository]

Is Pearson's correlation coefficient enough for functional connectivity in fMRI?

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: hyppo.neurodata.io/api/generated (no license), HechengJin0/MGC_paper (no license)

Status: code verified, 3 files readable

[10021] doi:10.1186/s40478-025-02187-6 [paper, data]

The profiling of extracellular vesicle subtypes in Huntington's disease brains identifies Alix as a novel marker of neuropathology.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[10022] doi:10.1371/journal.pcbi.1013748 [paper, repository]

Observing hidden neuronal states in experiments.

Journal: PLoS computational biology

Authors' code: serafimrodrigues/Amakhin-etal-2025 (MIT)

Status: code verified, 1,757 files readable, 3 matches

[10023] doi:10.1371/journal.pone.0323637 [paper, data]

Judging the unseen: The impact of onset controllability in shaping perceptions of defendants with traumatic brain injury.

Journal: PloS one

Status: data only, 1 dataset cited

[10024] doi:10.3390/audiolres15060172 [paper, data]

Early Speech Development in Romanian Children with Cochlear Implants Assessed Using the LittlEARS<sup>®</sup> Early Speech Production Questionnaire (LEESPQ).

Journal: Audiology research

Status: data only, 1 dataset cited

[10025] doi:10.3390/diagnostics15243118 [paper, repository]

A Hybrid Explainable AI Framework (HXAI) for Accurate and Interpretable Diagnosis of Alzheimer's Disease.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: F-H5/diagnosis_explanation_module (no license)

Status: code verified, 2 files readable, 8 matches

[10026] doi:10.64898/2025.12.03.691887 [paper, repository]

Crossmodal attention develops in the first year of life: Cortical signatures of tactile to visual exogenous spatial cuing at 8 but not 5 months of age

Journal: bioRxiv (preprint)

Authors' code: OSF k8qpe (no license)

Status: code verified, 8 files readable

[10027] doi:10.64898/2025.12.03.692197 [paper, repository]

Detection and quantification of planar traveling waves in the EEG using spherical phase fitting

Journal: bioRxiv (preprint)

Authors' code: jcbschwenk/eeg-planarwave-clust (no license)

Status: code verified, 35 files readable, 13 matches

Sunday, 7 December 2025 (9 papers)

[10028] doi:10.1002/ijc.70250 [paper, repository]

Outcomes and risk factors of hemorrhage in patients with resected brain metastases.

Journal: International journal of cancer

Authors' code: dasilew/clinicalNSCLC_1 (no license)

Status: code verified, 7 files readable, 5 matches

[10029] doi:10.1007/s10456-025-10019-3 [paper]

Integrative single cell RNA and spatial profiling identify mechanisms of neonatal brain hemorrhage pathophysiology and repair.

Journal: Angiogenesis

Status: code on request

[10030] doi:10.1016/j.gloepi.2025.100235 [paper, data]

AlzStack: Forecasting early-onset Alzheimer's with an explainable AI system using multiple data balancing techniques.

Journal: Global epidemiology

Status: data only, 1 dataset cited

[10031] doi:10.1038/s41467-025-66371-x [paper, data]

INSM1 governs a neuronal progenitor state that drives glioblastoma in a human stem cell model.

Journal: Nature communications

Status: data only, 1 dataset cited

[10032] doi:10.1038/s41540-025-00626-7 [paper, repository]

Criticality and increased intrinsic neural timescales in stroke.

Journal: NPJ systems biology and applications

Authors' code: kaichaowuu/Criticality_and_Increased_Intrinsic_Neural_Timescales_in_Stroke (no license)

Status: code verified, 5 files readable

[10033] doi:10.1038/s42003-025-09171-9 [paper]

Medium-chain triglycerides and ketogenic diet prevent alterations of the gut microbiome in transgenic Alzheimer's disease mice.

Journal: Communications biology

Status: code on request

[10034] doi:10.1186/s13041-025-01259-x [paper, data]

Identification and validation of microglia-associated genes in ischemic stroke using single-cell and bulk RNA-seq.

Journal: Molecular brain

Status: data only, 2 datasets cited

[10035] doi:10.3390/biology14121756 [paper, repository]

Effect of Proximity to Failure in Resistance Training on Circulating Levels of Neuroprotective Biomarkers.

Journal: Biology

Authors' code: OSF hmjrg (no license)

Status: code verified, 6 files readable

[10036] doi:10.3390/s25247439 [paper, data]

CONECT: Novel Weighted Networks Framework Leveraging Angle-Relation Connection (ARC) and Metaheuristic Algorithms for EEG-Based Dementia Classification.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

Saturday, 6 December 2025 (9 papers)

[10037] doi:10.1007/s10571-025-01640-3 [paper, data]

HIV-1 Tat Protein Exposure Alters the Morphological Characteristics and Gene Expression in the Primary Mouse Cortex Endothelial Cells and Human Brain Microvascular Endothelial Cells.

Journal: Cellular and molecular neurobiology

Status: data only, 1 dataset cited

[10038] doi:10.1038/s41467-025-66980-6 [paper, data]

Harnessing theta-gamma coupled brainwaves using ultrasound for spinal astrocyte revitalization and sustained neuropathic pain relief in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[10039] doi:10.1038/s41467-025-67133-5 [paper, repository]

Activation of hypothalamic-pontine-spinal pathway promotes locomotor initiation and functional recovery after spinal cord injury in mice.

Journal: Nature communications

Authors' code: pypi.org/project/pyswcloader (no license), gitee.com/bigduduwxf/neuron-vis (no license), Lilab2025/Single-neuron-projectome-of-Lateral-Hypothalamus (no license)

Status: code verified, 9 files readable

[10040] doi:10.1038/s42003-025-09239-6 [paper, data]

Amphetamine in adolescence induces a sex-specific mesolimbic dopamine phenotype in the adult prefrontal cortex.

Journal: Communications biology

Status: data only, 1 dataset cited

[10041] doi:10.1111/aos.70048 [paper]

Using continuous visual stimulus tracking for detecting visual function loss due to acquired brain injury.

Journal: Acta ophthalmologica

Status: code on request

[10042] doi:10.1186/s12984-025-01833-3 [paper, data]

Characterization of error-related potentials during the command of a lower-limb exoskeleton based on deep learning.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 2 datasets cited

[10043] doi:10.1186/s13071-025-07171-6 [paper, data]

Effects of emodepside on single-channel properties of Onchocerca volvulus SLO-1A (BK) potassium channels.

Journal: Parasites & vectors

Status: data only, 1 dataset cited

[10044] doi:10.3390/life15121871 [paper, data]

Multiscale Segmentation-Guided Diffusion Model for CBCT-to-CT Synthesis.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[10045] doi:10.3390/s25247426 [paper, data]

A Multidimensional Benchmark of Public EEG Datasets for Driver State Monitoring in Brain-Computer Interfaces.

Journal: Sensors (Basel, Switzerland)

Status: data only, 4 datasets cited

Friday, 5 December 2025 (40 papers, 35 on this page)

[10046] doi:10.1007/s10687-025-00521-8 [paper, repository]

Neural Bayes estimation and selection of complex bivariate extremal dependence models.

Journal: Extremes

Authors' code: lidiamandre/NBE_classifier_depmodels (no license)

Status: code verified, 2 files readable

[10047] doi:10.1016/j.hroo.2025.11.025 [paper, repository]

A custom analysis of R-R interval properties reveals alterations in the brain-heart axis in experimental animals with metabolic syndrome.

Journal: Heart rhythm O2

Authors' code: mathworks.com/matlabcentral/fileexchange (no license)

Status: code verified

[10048] doi:10.1016/j.isci.2025.114352 [paper, data]

PP2Acα regulates cerebellar development via phosphorylation-dependent neuronal programs.

Journal: iScience

Status: code on request, 2 datasets cited

[10049] doi:10.1016/j.isci.2025.114355 [paper]

Otic organoids: A model to study spiral ganglion neuron characteristics in Tmprss3-deficiency.

Journal: iScience

Status: code on request

[10050] doi:10.1016/j.xpro.2025.104239 [paper]

Protocol for generation of endothelial cells from human-derived iPSCs and integration into mouse brain explants.

Journal: STAR protocols

Status: code on request

[10051] doi:10.1016/j.xpro.2025.104258 [paper, repository]

Protocol for wide-field brainstem imaging largely preserving the overlying cerebellum.

Journal: STAR protocols

Authors' code: jp.mathworks.com/matlabcentral/fileexchange (no license), flatironinstitute/CaImAn-MATLAB (GPL-2.0), flatironinstitute/CaImAn (GPL-2.0)

Status: code verified, 345 files readable

[10052] doi:10.1038/s41398-025-03757-x [paper, data]

Functional vs anatomical cortico-striatal connectivity in the macaque brain.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[10053] doi:10.1038/s41467-025-65878-7 [paper, repository]

No causal links between estradiol and female's brain and mental health using Mendelian randomization.

Journal: Nature communications

Authors' code: han09090/Estradiol_Brain_Mental_Health (no license), Zenodo 17099458 (CC-BY-4.0)

Status: code verified, 10 files readable

[10054] doi:10.1038/s41467-025-66521-1 [paper, repository]

Human oligodendrocyte progenitor cells mediate synapse elimination through TAM receptor activation.

Journal: Nature communications

Authors' code: SellgrenLab/organoid-oligodendrocyte (no license), Zenodo 17418028 (CC-BY-4.0)

Status: code verified, 18 files readable, 8 matches

[10055] doi:10.1038/s41467-025-66975-3 [paper, repository]

Early intrinsic excitability plasticity of neocortical engram neurons defines memory formation and precision.

Journal: Nature communications

Authors' code: Yves33/Intrinsic (no license)

Status: code verified, 21 files readable, 3 matches

[10056] doi:10.1038/s41598-025-29008-z [paper, data]

A large-scale, multi-site examination of resting state functional connectivity in tinnitus.

Journal: Scientific reports

Status: data only, 4 datasets cited

[10057] doi:10.1038/s41598-025-29896-1 [paper, data]

Microbiome modulation and behavioural improvements in children with fragile X syndrome following probiotic intake: A pilot study.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10058] doi:10.1038/s41598-025-30168-1 [paper, repository]

Integrating active brain-computer interfaces (aBCIs) with passive BCIs (pBCIs) under different frustration levels.

Journal: Scientific reports

Authors' code: Delusionx1/aBCI_pBCI (no license)

Status: code verified, 58 files readable, 3 matches

[10059] doi:10.1038/s42003-025-09168-4 [paper, repository]

A genome-wide association study identifies the GPM6A locus associated with age at onset in ALS.

Journal: Communications biology

Authors' code: speciationgenomics.github.io/phasing (no license), usadellab/trimmomatic (GPL-3.0), alexdobin/STAR (MIT), deweylab.github.io/rsem (no license)

Status: code verified, 483 files readable

[10060] doi:10.1038/s43856-025-01170-5 [paper, repository]

Integrating individualized connectome with amyloid pathology improves predictive modeling of future cognitive decline.

Journal: Communications medicine

Authors' code: hehengda/cross_validation_network_based_amyloid (MIT), figshare 30152470 (CC-BY-4.0)

Status: code verified, 8 files readable, 6 matches

[10061] doi:10.1073/pnas.2523019122 [paper, data]

Neuromodulatory control of energy reserves in dopaminergic neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[10062] doi:10.1093/braincomms/fcaf475 [paper, repository]

Investigating links between white matter hyperintensities and menopausal status using robust age-correction methods in UK Biobank.

Journal: Brain communications

Authors' code: cobralab/documentation (no license), CoBrALab/WMH_UKB_menopause (no license)

Status: code verified, 3 files readable, 5 matches

[10063] doi:10.1093/psyrad/kkaf036 [paper]

Impact of AIR™ Recon DL on magnetic resonance imaging-based quantitative brain structure measurements.

Journal: Psychoradiology

Status: code on request

[10064] doi:10.1155/da/6529148 [paper, data]

Brain Network Controllability and Its Regional Gene Expression Profile Associated With Suicidal Tendencies in Major Depressive Disorder Patients.

Journal: Depression and anxiety

Status: data only, 2 datasets cited

[10065] doi:10.1162/imag.a.1044 [paper, repository]

Simultaneous confidence regions for image excursion sets: A validation study with applications in fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: JiyueQin/SimuInf (CC-BY-4.0), sjdavenport/StatBrainz (other)

Status: code verified, 400 files readable, 5 matches

[10066] doi:10.1162/imag.a.1045 [paper, repository]

Prediction-based sensory attenuation is related to prediction-based motor attenuation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: nicolasmcnair/MEPAnalysis (GPL-3.0)

Status: code verified, 11 files readable

[10067] doi:10.1162/imag.a.1049 [paper, data]

Interactive shape and color representation in visual working memory for colored objects in the human occipitotemporal cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[10068] doi:10.1186/s12880-025-02009-0 [paper, data]

Precision connectivity in osteoarthritis pain with permutation and network analysis: a key step toward clinical application.

Journal: BMC medical imaging

Status: data only, 1 dataset cited

[10069] doi:10.1186/s12967-025-07512-0 [paper, repository]

Same movies, different stories: aberrant brain state dynamics during naturalistic emotional stimuli in depression.

Journal: Journal of translational medicine

Authors' code: neurosynth/neurosynth (MIT)

Status: code verified, 38 files readable, 2 matches

[10070] doi:10.1186/s12974-025-03626-w [paper, data]

IL-2/IL-2Rβγ signaling in pruriceptors drives neuroimmune mechanisms of nivolumab-induced persistent itch.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[10071] doi:10.1186/s13041-025-01258-y [paper, data]

A cross-tissue transcriptome-wide association study identifies novel candidate genes associated with brain glymphatic system function.

Journal: Molecular brain

Status: data only, 1 dataset cited

[10072] doi:10.1186/s13195-025-01924-2 [paper, data]

Post-infection brain atrophy accelerates cognitive and molecular changes underlying dementia.

Journal: Alzheimer's research & therapy

Status: data only, 2 datasets cited

[10073] doi:10.1186/s40035-025-00519-z [paper, data]

Stratification of brain-derived extracellular vesicles of Alzheimer's disease patients indicates a unique proteomic content and a higher seeding capacity of small extracellular vesicles.

Journal: Translational neurodegeneration

Status: data only, 1 dataset cited

[10074] doi:10.1186/s40478-025-02090-0 [paper, repository]

Complement pathway dysregulation and astrocyte alterations in Down syndrome: evidence from postmortem brain tissue and iPSC-derived astrocytes.

Journal: Acta neuropathologica communications

Authors' code: pedrohpro/snRNAseq_DSbrain (no license)

Status: code verified, 3 files readable, 6 matches

[10075] doi:10.1186/s40708-025-00279-6 [paper, data]

Boosting brain tumor detection with an optimized ResNet and explainability via Grad-CAM and LIME.

Journal: Brain informatics

Status: data only, 2 datasets cited

[10076] doi:10.1371/journal.pbio.3003505 [paper, data]

Adaptive communication between cell assemblies and "reader" neurons shapes flexible brain dynamics.

Journal: PLoS biology

Status: data only, 1 dataset cited

[10077] doi:10.1371/journal.pcbi.1013777 [paper, repository]

Transient boosting of action potential backpropagation for few-shot temporal pattern learning.

Journal: PLoS computational biology

Authors' code: gsivori/transientboost (Apache-2.0), Zenodo 14792253 (Apache-2.0)

Status: code verified, 52 files readable, 2 matches

[10078] doi:10.1371/journal.pgen.1011942 [paper, data]

A dendritic guidance receptor functions in both ligand dependent and independent modes.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[10079] doi:10.1371/journal.pone.0324092 [paper, data]

Conditional deletion of Tmem63b does not impact mouse voiding behavior.

Journal: PloS one

Status: data only, 1 dataset cited

[10080] doi:10.3390/ani15243518 [paper, data]

Integrative Genomics and Multi-Tissue Transcriptomics Identify Key Loci and Pathways for Hypoxia Tolerance in Grass Carp.

Journal: Animals : an open access journal from MDPI

Status: data only, 1 dataset cited

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.