Every paper, by date: page 44

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 44 of 200: 17 December 2025 to 11 December 2025.

Wednesday, 17 December 2025 (46 papers, 33 on this page)

[9633] doi:10.1038/s41586-025-09887-y [paper, data]

Lesion-remote astrocytes govern microglia-mediated white matter repair.

Journal: Nature

Status: data only, 2 datasets cited

[9634] doi:10.1038/s41593-025-02157-0 [paper]

Phosphorylated tau exhibits antimicrobial activity capable of neutralizing herpes simplex virus 1 infectivity in human neurons.

Journal: Nature neuroscience

Status: code on request

[9635] doi:10.1038/s41598-025-28243-8 [paper, repository]

Lightweight Vision Transformer with transfer learning for interpretable Alzheimer's disease severity assessment.

Journal: Scientific reports

Authors' code: RuhikaSharma/enhanced-alzheimer-risk-assessment (MIT)

Status: code verified, 21 files readable, 10 matches

[9636] doi:10.1038/s41598-025-30780-1 [paper, repository]

Neural representation of the musical beat is facilitated but not contingent on the repetition of rhythmic patterns.

Journal: Scientific reports

Authors' code: Manu-RnB/pattern_repetition (no license)

Status: code verified, 49 files readable, 10 matches

[9637] doi:10.1038/s41598-025-31294-6 [paper, data]

Neural entrainment to visual rules in infant and adult brain.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9638] doi:10.1038/s41598-025-31344-z [paper, data]

Circulating MicroRNAs do not provide a diagnostic benefit over tissue biopsy in patients with brain metastases.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9639] doi:10.1038/s41598-025-31437-9 [paper, repository]

Comparison of human and marmoset basic-level face categorization based on shape.

Journal: Scientific reports

Authors' code: issalab/Jeon-apple_facestim_generation (MIT), issalab/mkturk (no license)

Status: code verified, 51 files readable, 2 matches

[9640] doi:10.1038/s41598-025-32385-0 [paper, repository]

Adaptive response to electrical pulse stimulation is impaired in FSHD myotubes by DUX4 gene network activation.

Journal: Scientific reports

Authors' code: Cardiovascular-Modeling-Laboratory/zlineDetection (BSD-3-Clause)

Status: code verified, 156 files readable

[9641] doi:10.1038/s43587-025-01025-7 [paper, data]

Lysophosphatidylcholines are associated with amyloidosis in early stages of Alzheimer's disease.

Journal: Nature aging

Status: code on request, 2 datasets cited

[9642] doi:10.1038/s43587-025-01027-5 [paper, repository]

Integrating polygenic signals and single-cell multiomics identifies cell-type-specific regulomes critical for immune- and aging-related diseases.

Journal: Nature aging

Authors' code: mayunlong89/scMORE (other), mayunlong89/scMORE_reproduce (no license)

Status: code verified, 157 files readable, 20 matches

[9643] doi:10.1073/pnas.2520814122 [paper, repository]

DNA methylation shapes transcription factor binding beyond canonical CpG contexts.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: rubensolozabal/methylation_on_peaks (no license)

Status: code verified, 37 files readable, 1 match

[9644] doi:10.1080/29979676.2025.2579919 [paper, repository]

A Novel, Variance Component-Based Method for Detecting Brain-Behavior Associations in Neuroimaging Data.

Journal: Statistics and data science in imaging

Authors' code: christinachen94/LaxKAT (no license)

Status: code verified, 12 files readable, 2 matches

[9645] doi:10.1093/braincomms/fcaf493 [paper, repository]

Subcortical correlates of developmental language disorder: more than the neostriatum.

Journal: Brain communications

Authors' code: qoala-t/qc (BSD-3-Clause), OSF wmkrq (no license)

Status: code verified, 21 files readable, 8 matches

[9646] doi:10.1126/sciadv.adw4917 [paper, repository]

Single-nucleus multiomics reveals the disrupted regulatory programs in three brain regions of sporadic early-onset Alzheimer's disease.

Journal: Science advances

Authors' code: Zenodo 16749335 (CC-BY-4.0), bsml320/snMultiome_sEOAD (no license)

Status: code verified, 60 files readable, 23 matches

[9647] doi:10.1126/sciadv.ady1348 [paper, repository]

High-order expansion of neural ordinary differential equation flows.

Journal: Science advances

Authors' code: bit.ly/3fprtuh (no license), Zenodo 17598142 (Apache-2.0)

Status: code verified

[9648] doi:10.1162/imag.a.1051 [paper, repository]

Mapping object space dimensions: New insights from temporal dynamics.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: alexiskidder/ObjectProcessing_RSVP (no license)

Status: code verified, 11 files readable, 5 matches

[9649] doi:10.1162/imag.a.1063 [paper, data]

Contrasting neonatal brain morphometry and its impact on neurodevelopmental outcome between preterm birth and congenital heart disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request, 1 dataset cited

[9650] doi:10.1186/s12864-025-12217-1 [paper, repository]

Sex chromosome dosage compensation in a sex reversing skink is not influenced by sexual phenotype.

Journal: BMC genomics

Authors' code: kango2/Annotation (no license)

Status: code verified, 5 files readable

[9651] doi:10.1186/s12916-025-04583-0 [paper]

Risk and protective factors associated with brain grey matter patterns in a population-based cohort of cognitively unimpaired 70 years old.

Journal: BMC medicine

Status: code on request

[9652] doi:10.1186/s12974-025-03621-1 [paper, data]

Basophils activate splenic B cells and dendritic cells via IL-13 signaling in acute traumatic brain injury.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[9653] doi:10.1186/s40478-025-02189-4 [paper, repository]

Microglia drive synaptic and functional connectivity deficits in the Ts65Dn mouse model of Down syndrome by affecting inhibition.

Journal: Acta neuropathologica communications

Authors' code: embl-cba/microglia-morphometry (no license), stardist/stardist (BSD-3-Clause), AlexiaTiberi/MicroNeuSeg (GPL-3.0), Zenodo 15228611 (GPL-3.0)

Status: code verified, 162 files readable, 5 matches

[9654] doi:10.1371/journal.pmen.0000509 [paper, repository]

Toward dimensional psychiatry in youth: A data-driven analysis of transdiagnostic internalizing symptoms in childhood and adolescence.

Journal: PLOS mental health

Authors' code: OSF br8wd (no license)

Status: code verified, 5 files readable, 2 matches

[9655] doi:10.3389/fneur.2025.1672133 [paper, repository]

Multi-center evaluation of Neurophet AQUA for brain MRI segmentation: T1 compared with FreeSurfer and T2-FLAIR compared with ground truth.

Journal: Frontiers in neurology

Authors' code: TorchIO-project/torchio (Apache-2.0)

Status: code verified, 170 files readable

[9656] doi:10.3389/fnins.2025.1639092 [paper, repository]

Simulated auditory nerve response evoked by lateral-wall and peri-modiolar electrode arrays inserted in scala tympani or scala vestibuli.

Journal: Frontiers in neuroscience

Authors' code: MPh-py/MPh (MIT), doi:10.12751/nncn.bc2023.262 (no license)

Status: code verified, 40 files readable, 1 match

[9657] doi:10.3389/frai.2025.1731062 [paper, repository]

Deep multimodal learning for domain-level cognitive decline prediction in Alzheimer's disease.

Journal: Frontiers in artificial intelligence

Authors' code: FernandoGaGu/Domain-cognitive-decline-prediction (no license)

Status: code verified, 46 files readable, 28 matches

[9658] doi:10.3389/fsysb.2025.1715692 [paper, data]

Neural networks and foundation models: two strategies for EEG-to-fMRI prediction.

Journal: Frontiers in systems biology

Status: data only, 1 dataset cited

[9659] doi:10.3390/cells14242011 [paper]

Dietary Interventions Modulate Cell Competition and Locomotor Decline in an Alzheimer's Disease <i>Drosophila</i> Model.

Journal: Cells

Status: code on request

[9660] doi:10.3390/cimb47121059 [paper]

Novel Synthetic Steroid Derivatives: Target Prediction and Biological Evaluation of Antiandrogenic Activity.

Journal: Current issues in molecular biology

Status: code on request

[9661] doi:10.64898/2025.12.15.693140 [paper, repository]

Neuronal recordings in head-fixed and freely-moving mole-rats

Journal: bioRxiv (preprint)

Authors' code: Malkemperlab/Molerat-Ephys (no license)

Status: code verified, 203 files readable, 8 matches

[9662] doi:10.64898/2025.12.15.694379 [paper, repository]

Resolving near-micron scale features within a whole sheep head using Hierarchical Phase-Contrast Tomography

Journal: bioRxiv (preprint)

Authors' code: gitlab.esrf.fr/night_rail/applications/mirone/night_rail_bm18 (no license), gitlab.esrf.fr/tomotools/nabu (MIT), Zenodo 16967995 (MIT), hipctproject/organ-masker (MIT)

Status: code verified, 468 files readable, 3 matches

[9663] doi:10.64898/2025.12.15.694413 [paper]

Control of cellular cortical tension and shape by RhoGTPase signalling

Journal: bioRxiv (preprint)

Status: code on request

[9664] doi:10.64898/2025.12.17.694881 [paper]

The Sweet Spot of Plasticity in Perceptual Learning Depends on Training Variability

Journal: bioRxiv (preprint)

Status: code on request

[9665] doi:10.7554/elife.106201 [paper, repository]

On CA1 ripple oscillations in rats and the reassessment of asynchronicity evidence.

Journal: eLife

Authors' code: RobsonSchefferTeixeira/elife_ripple_synchronization (no license)

Status: code verified, 40 files readable, 11 matches

Tuesday, 16 December 2025 (39 papers)

[9666] doi:10.1002/acn3.70285 [paper, repository]

Developmental, Neuroanatomical and Cellular Expression of Genes Causing Dystonia.

Journal: Annals of clinical and translational neurology

Authors' code: Dazcam/dystonia_snRNAseq_2024 (other)

Status: code verified, 30 files readable, 12 matches

[9667] doi:10.1007/s10571-025-01635-0 [paper]

Single-Cell Transcriptomic Profiling of GL261 Glioblastoma Cells Reveals Gene Expression Signatures Underlying Tumorigenicity.

Journal: Cellular and molecular neurobiology

Status: data only

[9668] doi:10.1007/s12035-025-05495-z [paper, data]

Analysis of AQP4 SNPs and Their Association With REM Sleep Behavior Disorder and Hallucinations in Parkinson's Disease.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[9669] doi:10.1016/j.ajhg.2025.11.012 [paper, repository]

Genetic control of non-coding RNAs in the human brain and their implications for complex traits.

Journal: American journal of human genetics

Authors' code: yanglab.westlake.edu.cn/ncrna_eqtl.html (no license), lichen1990/lncrna_circrna_eqtl (no license)

Status: code verified, 8 files readable, 2 matches

[9670] doi:10.1016/j.celrep.2025.116693 [paper, repository]

The production of the chemokine CCL2 by corneal sensory neurons initiates anti-viral immunity at the cornea and trigeminal ganglion.

Journal: Cell reports

Authors' code: Zenodo 17364394 (CC-BY-4.0), jishnu-lab/cornea_tg_ccl2 (no license)

Status: code verified, 6 files readable, 6 matches

[9671] doi:10.1016/j.isci.2025.114454 [paper]

Spectrin condensates provide a nidus for assembling the axonal membrane-associated periodic skeleton.

Journal: iScience

Status: code on request

[9672] doi:10.1016/j.molmet.2025.102303 [paper, repository]

Vagal sensory neurons encode internal protein status to guide eating.

Journal: Molecular metabolism

Authors' code: uit-no/lickcalc (GPL-3.0)

Status: code verified, 27 files readable

[9673] doi:10.1016/j.neurot.2025.e00813 [paper, repository]

Deep learning analysis of urine-derived stem cell mitochondrial morphology as a non-invasive Alzheimer's disease biomarker.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Authors' code: WinnieLaugh/MitoAnalysis (GPL-3.0)

Status: code verified, 9 files readable, 2 matches

[9674] doi:10.1038/s41413-025-00492-3 [paper, data]

Pharmacological inhibition of RAS pathway alleviates spine deformity in a mouse model of neurofibromatosis type 1.

Journal: Bone research

Status: data only, 1 dataset cited

[9675] doi:10.1038/s41467-025-64937-3 [paper, data]

Transcriptional regulation of protein synthesis by mediator kinase represents a therapeutic vulnerability in MYC-driven medulloblastoma.

Journal: Nature communications

Status: data only, 1 dataset cited

[9676] doi:10.1038/s41467-025-66107-x [paper, repository]

Differential modulation of feedforward inhibition reflects topographic organization in the olfactory system.

Journal: Nature communications

Authors' code: JohnHageter/Binned_Intensity (MIT)

Status: code verified, 3 files readable, 1 match

[9677] doi:10.1038/s41467-025-66110-2 [paper, data]

Cell-specific delivery of GJB2 restores auditory function in mouse models of DFNB1 deafness and mediates appropriate expression in NHP cochlea.

Journal: Nature communications

Status: data only, 1 dataset cited

[9678] doi:10.1038/s41467-025-67445-6 [paper, data]

VPS13B recruits lipid vesicles to promote mitochondrial fission and quality control.

Journal: Nature communications

Status: data only, 1 dataset cited

[9679] doi:10.1038/s41467-025-67472-3 [paper, repository]

Processing of natural scenes in the human pulvinar.

Journal: Nature communications

Authors' code: cvnlab/analyzePRF (no license), Zenodo 17476802 (CC-BY-4.0), guestdaniel/guestetal2025_nsdpulvinar (no license)

Status: code verified, 215 files readable, 15 matches

[9680] doi:10.1038/s41556-025-01813-8 [paper, repository]

Modelling co-development between the somites and neural tube in human trunk-like structures.

Journal: Nature cell biology

Authors' code: zhirongbaolab/heoa (no license), immunogenomics/harmony (no license)

Status: code verified, 59 files readable, 5 matches

[9681] doi:10.1038/s41593-025-02132-9 [paper, repository]

BOLD signal changes can oppose oxygen metabolism across the human cortex.

Journal: Nature neuroscience

Authors' code: NeuroenergeticsLab/two_modes_of_hemodynamics (CC-BY-NC-SA-4.0), gitlab.lrz.de/nmrm_lab/public_projects/mq-bold (GPL-3.0)

Status: code verified, 123 files readable, 13 matches

[9682] doi:10.1038/s41598-025-31143-6 [paper, data]

The expression of father-daughter bond behaviors influences adult partner attachment in titi monkeys.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9683] doi:10.1038/s41598-025-31601-1 [paper, data]

Reduced IGF-1 signaling fails to limit Alzheimer's disease progression in a novel rat model of IGF-1R haploinsufficiency.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9684] doi:10.1038/s41598-025-31666-y [paper, data]

Automated computer vision and dose-response modeling improve throughput and accuracy of an ex vivo functional precision medicine platform.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9685] doi:10.1038/s41746-025-02237-2 [paper, repository]

SLEEPYLAND: trust begins with fair evaluation of automatic sleep staging models.

Journal: NPJ digital medicine

Authors' code: biomedical-signal-processing/uSLEEPYLAND (MIT), biomedical-signal-processing/sleepyland (MIT)

Status: code verified, 173 files readable, 11 matches

[9686] doi:10.1038/s41746-025-02249-y [paper]

Prognostic model and U-shaped SBP-risk correlation in unstable pelvic fractures with TBI.

Journal: NPJ digital medicine

Status: code on request

[9687] doi:10.1038/s42003-025-09165-7 [paper, repository]

Feature similarity, a sensitive method to capture the functional interaction of brain regions and networks to support flexible behavior.

Journal: Communications biology

Authors' code: Xiuyi-Wang/Feature_similarity_Project (no license)

Status: code verified, 40 files readable, 4 matches

[9688] doi:10.1038/s44400-025-00049-5 [paper, repository]

Integrated genomic analysis and CRISPRi implicates <i>EGFR</i> in Alzheimer's disease risk.

Journal: NPJ dementia

Authors' code: wanglab-upenn/bash-INFERNO (no license)

Status: code verified, 23 files readable, 10 matches

[9689] doi:10.1044/2025_jslhr-24-00872 [paper, repository]

The Role of Speech Reading During Visual Word Processing in Hearing Children: A Functional Magnetic Resonance Imaging Study.

Journal: Journal of speech, language, and hearing research : JSLHR

Authors' code: OSF zx2y9 (no license)

Status: code verified

[9690] doi:10.1093/braincomms/fcaf476 [paper, repository]

Functional connectivity as a prognostic biomarker for neurodevelopmental outcomes in preterm infants without severe brain injury.

Journal: Brain communications

Authors' code: YiTienLi/Preterm_infant_study (no license)

Status: code verified, 7 files readable, 2 matches

[9691] doi:10.1093/braincomms/fcaf491 [paper, data]

Microstructure and gene expression influence gyrification in amyotrophic lateral sclerosis.

Journal: Brain communications

Status: data only, 2 datasets cited

[9692] doi:10.1159/000550075 [paper, data]

A Case of Severe Cerebral Amyloid Angiopathy-Related Inflammation in a 81-Year-Old Woman with Rapid Cognitive Decline.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[9693] doi:10.1159/000550096 [paper, data]

Effect of Water Temperature during Aquatic Exercise on Cognitive Impairment in Mice with Chronic Cerebral Hypoperfusion.

Journal: Journal of vascular research

Status: data only, 1 dataset cited

[9694] doi:10.1162/imag.a.1047 [paper, repository]

Unraveling the neural basis of repeated moral decisions with mouse tracking and fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: andlab-um/RDdishonesty (no license)

Status: code verified, 6 files readable, 1 match

[9695] doi:10.1162/imag.a.1064 [paper, repository]

Separating feedforward and feedback dynamics using time-frequency resolved connectivity: A hybrid model of left ventral occipitotemporal cortex in word reading.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: AaltoImagingLanguage/you2025 (no license)

Status: code verified, 18 files readable, 10 matches

[9696] doi:10.1186/s12984-025-01841-3 [paper, data]

Establishment of a novel brainstem ischemic dysphagia model: single-cell sequencing reveals the molecular mechanisms underlying mPES intervention.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

[9697] doi:10.1186/s42238-025-00361-0 [paper, data]

Comparative analysis of 105 datasets across species and tissues reveals differential transcriptomic responses to cannabinoids THC and CBD.

Journal: Journal of cannabis research

Status: data only, 2 datasets cited

[9698] doi:10.1371/journal.pbio.3003553 [paper, data]

The Drosophila escape motor circuit shows differential vulnerability to aging linked to functional decay.

Journal: PLoS biology

Status: data only, 2 datasets cited

[9699] doi:10.1371/journal.pcbi.1012873 [paper, repository]

The dynamics of explore-exploit decisions suggest a threshold mechanism for reduced random exploration in older adults.

Journal: PLoS computational biology

Authors' code: OSF upn8t (no license)

Status: code verified, 44 files readable, 2 matches

[9700] doi:10.3390/molecules30244789 [paper, data]

Synthesis and Anti-Tumor Evaluation of Carboranyl BMS-202 Analogues-A Case of Carborane Not as Phenyl Ring Mimetic.

Journal: Molecules (Basel, Switzerland)

Status: data only, 1 dataset cited

[9701] doi:10.3390/s25247634 [paper, data]

EEG Sensor-Based Computational Model for Personality and Neurocognitive Health Analysis Under Social Stress.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[9702] doi:10.64898/2025.12.12.694017 [paper, repository]

Diffusion-weighted steady-state free precession imaging in the ex vivo macaque brain on a 10.5T human MRI scanner

Journal: bioRxiv (preprint)

Authors' code: BenjaminTendler/UHF_DWSSFP (Apache-2.0)

Status: code verified, 21 files readable, 5 matches

[9703] doi:10.64898/2025.12.13.694093 [paper, data]

The Overlap Area as a Novel Measure of Effect Size in Neuroscience Research

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[9704] doi:10.7554/elife.105271 [paper, data]

Strikingly different neurotransmitter release strategies in dopaminergic subclasses.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 15 December 2025 (49 papers)

[9705] doi:10.1002/advs.202512362 [paper]

Ferroptosis-Mediated Hippocampal Neuronal Loss Post-mTBI: Chromatin Accessibility Profiling and Single-Nucleus Transcriptomics.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[9706] doi:10.1002/advs.202514352 [paper, data]

Convergent and Divergent Connectivity Patterns of the Arcuate Fasciculus in Macaques and Humans.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[9707] doi:10.1016/j.isci.2025.114425 [paper]

Transcranial microtesla magnetic fields suppress neuroinflammation and neuronal oxidative stress burden.

Journal: iScience

Status: code on request

[9708] doi:10.1016/j.isci.2025.114436 [paper, repository]

Reinforcement learning in densely recurrent biological networks.

Journal: iScience

Authors' code: Zenodo 17591250 (MIT), dsb-lab/softwired-celegans (MIT)

Status: code verified, 88 files readable

[9709] doi:10.1016/j.jneumeth.2025.110661 [paper, data]

An optogenetic assay of Drosophila larval motor neuron performance in vivo.

Journal: Journal of neuroscience methods

Status: data only, 1 dataset cited

[9710] doi:10.1038/s41380-025-03418-x [paper]

An fMRI-informed EEG model of the amygdala is associated with salience network dynamics during naturalistic emotional stimulation.

Journal: Molecular psychiatry

Status: code on request

[9711] doi:10.1038/s41419-025-08314-4 [paper, repository]

Combined ketone body and glutamine supplementation restores aerobic energy production in AGC1-deficient neuronal progenitors.

Journal: Cell death & disease

Authors' code: Nbalb/AGC1_iPSCs (no license)

Status: dead link

[9712] doi:10.1038/s41467-025-66108-w [paper, data]

Slc22a17 governs postnatal neurogenesis by maintaining the iron homeostasis in hippocampus.

Journal: Nature communications

Status: data only, 1 dataset cited

[9713] doi:10.1038/s41467-025-67077-w [paper, repository]

Single-neuron correlates of visual consciousness in human lateral occipital complex.

Journal: Nature communications

Authors' code: codeocean:0628053 (no license), codeocean:2303025 (no license), codeocean:7059539 (no license), codeocean:4388145 (no license), codeocean:5851818 (no license)

Status: code found, still to be checked

[9714] doi:10.1038/s41467-025-67381-5 [paper, data]

Convergent causal mapping unravels distinct frontal networks for visuospatial selective attention.

Journal: Nature communications

Status: data only, 1 dataset cited

[9715] doi:10.1038/s41592-025-02927-5 [paper, repository]

Systematic scRNA-seq screens profile neural organoid response to morphogens.

Journal: Nature methods

Authors' code: quadbio/organoid_patterning_screen (no license)

Status: code verified, 11 files readable, 12 matches

[9716] doi:10.1038/s41593-025-02123-w [paper, data]

A fully iPS-cell-derived 3D model of the human blood-brain barrier for exploring neurovascular disease mechanisms and therapeutic interventions.

Journal: Nature neuroscience

Status: data only, 2 datasets cited

[9717] doi:10.1038/s41593-025-02136-5 [paper, repository]

The stroke risk gene Foxf2 maintains brain endothelial cell function via Tie2 signaling.

Journal: Nature neuroscience

Authors' code: simonmfr/foxf2-per-celltype (no license), simonmfr/brain-vasc-scrnaseq-foxf2-ko (no license), GunnarSchotta/NGS.analysis (no license)

Status: code verified, 28 files readable, 10 matches

[9718] doi:10.1038/s41598-025-28070-x [paper, data]

NeuroFusionNet: a hybrid EEG feature fusion framework for accurate and explainable Alzheimer's Disease detection.

Journal: Scientific reports

Status: data only, 4 datasets cited

[9719] doi:10.1038/s41598-025-31999-8 [paper, repository]

Leveraging spatial cues from cochlear implant microphones to efficiently enhance speech separation in naturalistic listening scenes.

Journal: Scientific reports

Authors' code: sayo20/Leveraging-Spatial-Cues-from-Cochlear-Implant-Microphones-to-Efficiently-Enhance-Speech-Separation- (no license)

Status: code verified, 5 files readable, 4 matches

[9720] doi:10.1038/s41598-025-32091-x [paper, data]

Selective cognitive effects of multilingualism emerge in visuospatial working memory in later life.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9721] doi:10.1038/s42003-025-09357-1 [paper, repository]

Low-dimensional signatures of neuronal activity associated with long-term operant conditioning in Aplysia.

Journal: Communications biology

Authors' code: Byrne-Lab/VSD_CFE_analysis (no license), OSF qb59g (no license), Byrne-Lab/Vanaki (no license)

Status: code verified, 62 files readable, 4 matches

[9722] doi:10.1038/s44271-025-00377-5 [paper, repository]

No disconnection syndrome after near-complete callosotomy.

Journal: Communications psychology

Authors' code: selinbekir/splitbrain-disconnection-analysis (no license)

Status: code verified, 2 files readable, 2 matches

[9723] doi:10.1038/s44318-025-00653-4 [paper, repository]

TDP-43 directly inhibits mRNA accumulation in neurites through modulation of mRNA stability.

Journal: The EMBO journal

Authors' code: COMBINE-lab/Salmon (BSD-3-Clause), xryanglab/xtail (GPL-3.0), taliaferrolab/oligopools (no license)

Status: code verified, 131 files readable, 4 matches

[9724] doi:10.1073/pnas.2505086122 [paper, repository]

Dynamic functional connectivity following cochlear implantation: Predicting speech outcomes and exploring brain network dynamics.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: jesmaelpoor/Dynamic-Functional-Connectivity-Following-Cochlear-Implantation (no license)

Status: code verified, 4 files readable, 3 matches

[9725] doi:10.1073/pnas.2512665122 [paper, repository]

Cortical tracking of sign language: The role of language knowledge in tracking of different articulators.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF um8re (no license)

Status: code verified, 4 files readable, 3 matches

[9726] doi:10.1093/braincomms/fcaf445 [paper, repository]

A pilot safety and tolerability study of scanning ultrasound as a neuromodulation therapy in Alzheimer's disease.

Journal: Brain communications

Authors' code: AnthMHarris/SUSinAD (CC0-1.0)

Status: code verified, 14 files readable, 2 matches

[9727] doi:10.1093/braincomms/fcaf497 [paper, repository]

Enhanced monitoring of Alzheimer's disease brain atrophy using composite value ratios of volumes.

Journal: Brain communications

Authors' code: isaac-6/biodiscvr (GPL-3.0)

Status: code verified, 19 files readable, 7 matches

[9728] doi:10.1093/nc/niaf059 [paper, repository]

Brain-body interactions associated with the transition from mind wandering to awareness of its occurrence.

Journal: Neuroscience of consciousness

Authors' code: shina-k/Neurosci.-Conscious.2025 (MIT)

Status: code verified, 11 files readable, 4 matches

[9729] doi:10.1111/jcpp.70096 [paper, repository]

Smartphone language and resting-state EEG indicators of self-focused attention prospectively predict major depressive disorder risk in adolescents.

Journal: Journal of child psychology and psychiatry, and allied disciplines

Authors' code: OSF tkrsf (no license)

Status: code verified, 1 file readable

[9730] doi:10.1117/1.jbo.30.12.126007 [paper, repository]

Versatile and comprehensive hyperspectral imaging tool for molecular neuronavigation: a case study on cerebral gliomas.

Journal: Journal of biomedical optics

Authors' code: HyperProbe/SpectraFit (no license)

Status: code verified, 24 files readable

[9731] doi:10.1152/function.078.2025 [paper, data]

Intracellular calcium release activates carotid body afferents by fentanyl.

Journal: Function (Oxford, England)

Status: data only, 1 dataset cited

[9732] doi:10.1161/strokeaha.125.052266 [paper, repository]

Patterns of Structural Disconnection Driving Proprioceptive Deficits in Chronic Stroke.

Journal: Stroke

Authors' code: neuralabc/Structural-Proprioceptive-Disconnectome-Stroke (GPL-3.0)

Status: code verified, 4 files readable, 2 matches

[9733] doi:10.1162/imag.a.1059 [paper, repository]

Subjective reliving of past events is modulated by premotor-hippocampal coupling and bodily self-consciousness during event encoding.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF wkcnm (no license)

Status: code verified, 1 file readable, 1 match

[9734] doi:10.1186/s40035-025-00527-z [paper, data]

Positive modulation of sigma-1 receptor: a new weapon to mitigate disease progression in amyotrophic lateral sclerosis.

Journal: Translational neurodegeneration

Status: data only, 1 dataset cited

[9735] doi:10.1242/dev.205064 [paper, data]

Pair-rule-like transcription patterns during neural tube closure in a proto-vertebrate.

Journal: Development (Cambridge, England)

Status: data only, 2 datasets cited

[9736] doi:10.1371/journal.pcbi.1013674 [paper, repository]

Computational origins of shape perception.

Journal: PLoS computational biology

Authors' code: buildingamind/ShapeBasedVision_HumanAdult (MIT)

Status: code verified, 38 files readable, 4 matches

[9737] doi:10.1371/journal.pcbi.1013733 [paper, data]

Axon collateralization and focal myelin dystrophy alter action potential propagation in multicompartment pyramidal neuron models.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[9738] doi:10.1371/journal.pcbi.1013782 [paper, repository]

Predicting neural responses to intra- and extra-cranial electric brain stimulation by means of the reciprocity theorem.

Journal: PLoS computational biology

Authors' code: torbjone/ES_from_reciprocity (no license)

Status: code verified, 10 files readable, 8 matches

[9739] doi:10.1371/journal.pcbi.1013822 [paper, repository]

Lysergic acid diethylamide-derived excitatory/inhibitory ratio change enhances global synchrony in functional brain dynamics.

Journal: PLoS computational biology

Authors' code: zoelingyu/lsd (no license)

Status: code verified, 10 files readable, 5 matches

[9740] doi:10.1371/journal.pone.0292768 [paper, data]

PRCnet: An efficient model for automatic detection of brain tumor in MRI images.

Journal: PloS one

Status: data only, 2 datasets cited

[9741] doi:10.1371/journal.pone.0326727 [paper, data]

Estrogen profiling in blood and brain: Effects of season and an aggressive interaction in a songbird.

Journal: PloS one

Status: data only, 1 dataset cited

[9742] doi:10.26508/lsa.202503508 [paper, data]

A role for the cholinergic neuron circadian clock in RNA metabolism and mediating neurodegeneration.

Journal: Life science alliance

Status: data only, 1 dataset cited

[9743] doi:10.3389/fncel.2025.1681881 [paper, repository]

Single-nucleus RNA-seq reveals no increase in T cells in Alzheimer's disease prefrontal cortex or hippocampus.

Journal: Frontiers in cellular neuroscience

Authors' code: YOKOYAMA-UCSF/Brain-Resident-T-Cells-in-Alzheimer-s-Disease (no license)

Status: code verified, 12 files readable, 4 matches

[9744] doi:10.3389/fneur.2025.1719618 [paper, data]

Multi-site, <i>in vivo</i> MRI dataset of brain diffusivity measures before and after harmonization, and atrophy measures following controlled cortical impact in male and female adult rats.

Journal: Frontiers in neurology

Status: data only, 2 datasets cited

[9745] doi:10.3390/jimaging11120449 [paper, data]

Sensory Representation of Neural Networks Using Sound and Color for Medical Imaging Segmentation.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[9746] doi:10.3390/molecules30244779 [paper, repository]

Cu<sub>14</sub>H<sub>12</sub>(P<i><sup>t</sup></i>Bu<sub>3</sub>)<sub>6</sub>Cl<sub>2</sub>-The Expanse of Stryker's Reagent.

Journal: Molecules (Basel, Switzerland)

Authors' code: Conzel/cu14-hydride-prediction (no license)

Status: code verified, 6 files readable, 2 matches

[9747] doi:10.3390/nano15241879 [paper, data]

Toward Subcellular Action Potential Detection with Nanodiamond Quantum Magnetometry.

Journal: Nanomaterials (Basel, Switzerland)

Status: data only, 1 dataset cited

[9748] doi:10.3390/proteomes13040066 [paper, data]

Proteome Profiling of Rabies-Infected and Uninfected Dog Brain Tissues, Cerebrospinal Fluids and Serum Samples.

Journal: Proteomes

Status: data only, 2 datasets cited

[9749] doi:10.3758/s13421-025-01826-6 [paper, repository]

Two routes to a target: Visual priming for direct and indirect attentional sets.

Journal: Memory & cognition

Authors' code: alexander-pastukhov/priming-attentional-sets-geistesblitz (CC0-1.0), OSF jftg4 (no license)

Status: code verified, 60 files readable

[9750] doi:10.5114/pjr/209785 [paper, repository]

Assessing glymphatic dysfunction using the diffusion tensor image analysis along the perivascular space (DTI-ALPS) index in gliomas and metastases.

Journal: Polish journal of radiology

Authors' code: raidionics/raidionics (BSD-2-Clause)

Status: code verified, 128 files readable, 2 matches

[9751] doi:10.64898/2025.12.12.693919 [paper, repository]

Experiences are encoded by brainwide reprogramming of synaptome architecture

Journal: bioRxiv (preprint)

Authors' code: git.ecdf.ed.ac.uk/ddominic/the-synaptome-experience-project (no license)

Status: code verified

[9752] doi:10.7554/elife.105452 [paper, repository]

Early changes in the properties of CA3 engram cells explored with a novel viral tool in mice.

Journal: eLife

Authors' code: dcupolillo/cupolillo_et_al_2025 (MIT)

Status: code verified, 6 files readable, 4 matches

[9753] doi:10.7554/elife.98652 [paper, repository]

Dissociable memory modulation mechanisms facilitate fear amnesia at different timescales.

Journal: eLife

Authors' code: OSF 9agvk (no license)

Status: code verified, 12 files readable

Sunday, 14 December 2025 (13 papers)

[9754] doi:10.1002/advs.202502250 [paper, data]

Circular RNA PTPN4 Contributes to Blood-Brain Barrier Disruption during Early Epileptogenesis.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[9755] doi:10.1038/s41380-025-03382-6 [paper, repository]

MRI-derived estimation of biological aging in patients with affective disorders in a 9-year follow-up - a prospective marker of future recurrence.

Journal: Molecular psychiatry

Authors' code: OSF qadxz (no license)

Status: empty repository

[9756] doi:10.1038/s41419-025-08319-z [paper]

Ferroptosis inhibition protects against α-synuclein-related neuronal cell death.

Journal: Cell death & disease

Status: code on request

[9757] doi:10.1038/s41467-025-67434-9 [paper, repository]

Cell type-specific functions of the PBAF chromatin-remodeling complex in neuronal diversification.

Journal: Nature communications

Authors' code: Zenodo 10567647 (CC-BY-4.0)

Status: code verified, 5 files readable, 1 match

[9758] doi:10.1038/s41467-025-67542-6 [paper, data]

Dysregulated hippocampal fatty acid metabolism following intermittent hypoxemia-induced neonatal brain injury is rescued by treatment with acetate.

Journal: Nature communications

Status: data only, 1 dataset cited

[9759] doi:10.1038/s41540-025-00627-6 [paper, repository]

Biophysical simulation enables segmentation and nervous system atlas mapping for image first spatial omics.

Journal: NPJ systems biology and applications

Authors' code: buchserlab/sidola-ns (AGPL-3.0)

Status: code verified, 4 files readable, 2 matches

[9760] doi:10.1038/s41598-025-30645-7 [paper, repository]

FireCastNet: earth-as-a-graph for seasonal fire prediction.

Journal: Scientific reports

Authors' code: seasfire/firecastnet (no license)

Status: code verified, 73 files readable, 19 matches

[9761] doi:10.1038/s42003-025-09339-3 [paper]

Distinct information flows for different whole-body actions across LOTC subdivisions.

Journal: Communications biology

Status: code on request

[9762] doi:10.1038/s42003-025-09361-5 [paper, data]

Neural network dynamics associated with facial and subjective emotional responses.

Journal: Communications biology

Status: data only, 1 dataset cited

[9763] doi:10.1038/s42003-025-09371-3 [paper, repository]

Multi-contrast generation and quantitative MRI using a transformer-based framework with RF excitation embeddings.

Journal: Communications biology

Authors' code: momentum-laboratory/tbmf (CC-BY-NC-ND-4.0), Zenodo 17712834 (CC-BY-NC-ND-4.0), kherz/pulseq-cest-library (no license)

Status: code verified, 92 files readable, 6 matches

[9764] doi:10.1080/15548627.2025.2597463 [paper, data]

Autophagy regulates PVALB (parvalbumin) interneuron excitability and memory.

Journal: Autophagy

Status: data only, 1 dataset cited

[9765] doi:10.1111/acel.70329 [paper, repository]

Linking Age Changes in Human Cortical Microcircuits to Impaired Brain Function and EEG Biomarkers.

Journal: Aging cell

Authors' code: Zenodo 15847900 (CC-BY-4.0)

Status: code verified, 60 files readable, 12 matches

[9766] doi:10.1111/add.70283 [paper, repository]

Appetitive responses toward smoking-related stimuli in abstinence-motivated, non-deprived individuals with chronic tobacco dependence: A multi-methodological investigation.

Journal: Addiction (Abingdon, England)

Authors' code: OSF 74ydh (no license)

Status: code verified, 18 files readable, 5 matches

Saturday, 13 December 2025 (28 papers)

[9767] doi:10.1002/epi.70057 [paper, data]

Cardiorespiratory cross-frequency coupling biomarker for sudden unexpected death in epilepsy.

Journal: Epilepsia

Status: data only, 2 datasets cited

[9768] doi:10.1007/s11881-025-00353-y [paper, data]

Event-related potentials in the "Triangle" framework of reading and developmental dyslexia: a systematic review.

Journal: Annals of dyslexia

Status: data only, 1 dataset cited

[9769] doi:10.1016/j.celrep.2025.116670 [paper, repository]

MeCP2 regulates telencephalic development in human cerebral organoids.

Journal: Cell reports

Authors' code: ncbi.nlm.nih.gov/geo/query (no license)

Status: code verified

[9770] doi:10.1016/j.crphys.2025.100176 [paper, data]

Verifying the physiological significance of the preference for low facial temperature in humans.

Journal: Current research in physiology

Status: data only, 1 dataset cited

[9771] doi:10.1016/j.isci.2025.114440 [paper, repository]

Multiplexing of visual-auditory signals in a predominantly auditory brain region.

Journal: iScience

Authors' code: cran.r-project.org/web/packages (no license)

Status: code verified

[9772] doi:10.1016/j.isci.2025.114442 [paper, repository]

Contextualized biomedical language processing enhances ICU survival prediction.

Journal: iScience

Authors' code: Zenodo 17733440 (CC-BY-4.0), aaronchen007/cns_model_code (no license)

Status: code verified, 32 files readable, 5 matches

[9773] doi:10.1016/j.isci.2025.114443 [paper, repository]

A human blood-brain barrier model reveals pericytes as critical regulators of viral neuroinvasion.

Journal: iScience

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[9774] doi:10.1016/j.mtbio.2025.102671 [paper, data]

Active-targeted nano-hemostatic for hemostasis and brain microenvironment optimization in intracerebral hemorrhage therapy.

Journal: Materials today. Bio

Status: data only, 1 dataset cited

[9775] doi:10.1038/s41467-025-66217-6 [paper, data]

Egr1 is a sex-dependent regulator of neuronal chromatin, structural plasticity, and behaviour.

Journal: Nature communications

Status: data only, 1 dataset cited

[9776] doi:10.1038/s41467-025-66355-x [paper, repository]

Cryo-correlative light and electron tomography of dopaminergic axonal varicosities reveals non-synaptic modulation of cortico-striatal synapses.

Journal: Nature communications

Authors' code: vladanl/Pyto (GPL-3.0)

Status: code verified, 359 files readable, 2 matches

[9777] doi:10.1038/s41467-025-66427-y [paper, data]

The E3 ubiquitin ligase FBXL18 stabilizes BST2 to promote inflammation in RABV-infected astrocytes.

Journal: Nature communications

Status: data only, 1 dataset cited

[9778] doi:10.1038/s41467-025-66436-x [paper, repository]

Norepinephrine-mediated arousal fluctuations drive inverted U-shaped functional connectivity dynamics.

Journal: Nature communications

Authors' code: TrangeTung/LC_inverted_U_shape_FNs (no license)

Status: code verified, 52 files readable, 9 matches

[9779] doi:10.1038/s41467-025-66548-4 [paper]

Human cerebrospinal fluid net flow enhanced by respiration during the awake state.

Journal: Nature communications

Status: code on request

[9780] doi:10.1038/s41467-025-67137-1 [paper, repository]

Reshaping reservoirs with unsupervised Hebbian adaptation.

Journal: Nature communications

Authors' code: Zenodo 1342401 (other-open), Zenodo 4654722 (CC-BY-4.0), codeocean:3241639 (no license)

Status: code verified, 9 files readable

[9781] doi:10.1038/s41467-025-67291-6 [paper, repository]

Dynamic nanoscale architecture of synaptic vesicle fusion in mouse hippocampal neurons.

Journal: Nature communications

Authors' code: MohsenSadeghi/meso_synaptic_vesicle_fusion (MIT), Zenodo 17369946 (MIT)

Status: code verified, 18 files readable

[9782] doi:10.1038/s41467-025-67477-y [paper, data]

Methylphenidate reorganizes cortical hierarchy through dopaminergic modulation.

Journal: Nature communications

Status: data only, 1 dataset cited

[9783] doi:10.1038/s41598-025-25575-3 [paper, repository]

Bistability and hysteresis in the proximity-based grouping of dot lattices.

Journal: Scientific reports

Authors' code: OSF gcxp9 (no license), PerceptualGroupingResearch/gcxp9 (no license)

Status: code verified, 42 files readable, 5 matches

[9784] doi:10.1038/s41598-025-31868-4 [paper, repository]

Growth factor supplementation modulates survival, morphology, and network activity of neurogenin-2 induced human neurons.

Journal: Scientific reports

Authors' code: git.vu.nl/public-neurosciences-fga/matlab-apps (no license)

Status: code verified

[9785] doi:10.1038/s41598-025-31950-x [paper, repository]

Episodic-like memory in a simulation of cuttlefish behavior.

Journal: Scientific reports

Authors' code: jkrichma/EpisodicLikeMemoryModel (GPL-3.0)

Status: code verified, 4 files readable, 1 match

[9786] doi:10.1038/s41598-025-32561-2 [paper, repository]

Optimal channel selection of electroencephalography based on functional network via global graph measurements: application for epilepsy.

Journal: Scientific reports

Authors' code: LouisLee6111/Epilepsy_Channel_reduction (no license)

Status: code verified, 129 files readable

[9787] doi:10.1038/s42003-025-09184-4 [paper, repository]

Optimal stochastic tracking control for brain network dynamics.

Journal: Communications biology

Authors' code: mb-bca/pymou (Apache-2.0), Kangli-Dong (no license)

Status: code verified, 5 files readable, 4 matches

[9788] doi:10.1038/s42003-025-09315-x [paper, repository]

Can we infer excitation-inhibition balance from the spectrum of population activity?

Journal: Communications biology

Authors' code: arvkumar/ei_balance_lfp_spectrum (no license)

Status: code verified, 17 files readable, 5 matches

[9789] doi:10.1186/s12936-025-05730-x [paper]

Odor repellency and neuronal responses of commercial products towards Anopheles mosquitoes.

Journal: Malaria journal

Status: code on request

[9790] doi:10.3390/brainsci15121329 [paper, data]

Lesion-Symptom Mapping of Acute Speech Deficits After Left vs. Right Hemisphere Stroke: A Retrospective Analysis of NIHSS Best Language Scores and Clinical Neuroimaging.

Journal: Brain sciences

Status: data only, 1 dataset cited

[9791] doi:10.3390/brainsci15121330 [paper, repository]

The Neural Contributions to Reactive Balance Control: A Scoping Review of EEG, fNIRS, MRI, and PET Studies.

Journal: Brain sciences

Authors' code: OSF ckyf6 (no license)

Status: empty repository

[9792] doi:10.64898/2025.12.10.693407 [paper, repository]

A subject-specific reversible folding model reveals geometry-driven white-matter organization

Journal: bioRxiv (preprint)

Authors' code: Besm/neurotrace (no license)

Status: empty repository, 1 file readable

[9793] doi:10.64898/2025.12.11.693716 [paper, repository]

Human cortical networks trade communication efficiency for computational reliability.

Journal: bioRxiv (preprint)

Authors' code: fabridamicelli.github.io/echoes (no license), netneurotools.readthedocs.io (no license), netneurolab.github.io/neuromaps (no license)

Status: code verified

[9794] doi:10.64898/2025.12.12.693963 [paper]

Neural replay is connected to latent cause inference and supports fast generalization

Journal: bioRxiv (preprint)

Status: code on request

Friday, 12 December 2025 (50 papers)

[9795] doi:10.1002/advs.202503725 [paper, data]

CRISPRa Lipid Nanocomplex-Mediated Mt3 Targeting Enhances Astrocytic Endocytosis of Amyloid-β in an Alzheimer's Disease Mouse Model.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[9796] doi:10.1002/mrm.70144 [paper, repository]

What If Each Voxel Were Measured With a Different Diffusion Protocol?

Journal: Magnetic resonance in medicine

Authors' code: NYU-DiffusionMRI/PIPE (no license)

Status: code verified, 5 files readable, 2 matches

[9797] doi:10.1007/s12672-025-04271-8 [paper, data]

Integrative analysis reveals NFIL3 as a prognostic marker in glioblastoma associated with anesthesia and circadian rhythm genes.

Journal: Discover oncology

Status: data only, 1 dataset cited

[9798] doi:10.1016/j.bandl.2025.105687 [paper, data]

The neural response to highly iconic signs in hearing learners and deaf signers.

Journal: Brain and language

Status: data only, 1 dataset cited

[9799] doi:10.1016/j.celrep.2025.116697 [paper]

Retrograde control of sympathetic neuron-satellite glia interactions by target-derived NGF signaling.

Journal: Cell reports

Status: code on request

[9800] doi:10.1016/j.dcn.2025.101657 [paper, repository]

Pubertal timing and tempo differentially influence cortical and subcortical maturation in adolescence.

Journal: Developmental cognitive neuroscience

Authors' code: clarefmccann/abcd-pub-smri-publication (no license)

Status: code verified, 19 files readable

[9801] doi:10.1016/j.isci.2025.114421 [paper]

Increased excitability of layer 5 neocortical pyramidal neurons and its contribution to seizure activity in Gabrg2 gene-deficient mice.

Journal: iScience

Status: code on request

[9802] doi:10.1016/j.isci.2025.114427 [paper, data]

Somatosensory control of thalamic relay neurons is regulated by two distinct layer 6 feedback systems.

Journal: iScience

Status: code on request, 1 dataset cited

[9803] doi:10.1016/j.isci.2025.114431 [paper, data]

Directed functional reinnervation to curb nociception and enable sensation.

Journal: iScience

Status: code on request, 1 dataset cited

[9804] doi:10.1016/j.xpro.2025.104271 [paper, repository]

Protocol for retinal stress culture and single-cell analysis.

Journal: STAR protocols

Authors' code: Zenodo 14279513 (CC-BY-4.0), jackienorrie/retinastress (no license)

Status: code verified, 4 files readable, 10 matches

[9805] doi:10.1038/s41380-025-03368-4 [paper]

Lifestyle shapes preclinical social and microglial deficits in an Alzheimer's disease mouse model.

Journal: Molecular psychiatry

Status: code on request

[9806] doi:10.1038/s41380-025-03384-4 [paper, data]

A co-culture model of dopaminergic and glutamatergic neurons derived from patients with idiopathic schizophrenia reveals a hypodopaminergic phenotype.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[9807] doi:10.1038/s41467-025-65541-1 [paper, repository]

Neural decoding of autobiographical mental image features with a general semantic model.

Journal: Nature communications

Authors' code: OSF d4ku8 (no license)

Status: code verified, 89 files readable, 9 matches

[9808] doi:10.1038/s41467-025-66051-w [paper, repository]

An epigenetic repressor TRIM66 dictates monogenic olfactory receptor expression, neural activity, and olfactory behavior.

Journal: Nature communications

Authors' code: YaleiKong/Trim66_project (MIT), Zenodo 17132541 (CC-BY-4.0)

Status: code verified, 38 files readable, 14 matches

[9809] doi:10.1038/s41467-025-66397-1 [paper, data]

Transferrin-phosphatidylserine liposomes target TDP-43 and neuroinflammation in male mice with neuropathic pain.

Journal: Nature communications

Status: data only, 1 dataset cited

[9810] doi:10.1038/s41467-025-66709-5 [paper, repository]

Dynamic changes in mitochondria support phenotypic flexibility of microglia.

Journal: Nature communications

Authors' code: codeocean:1668583 (no license)

Status: code found, still to be checked

[9811] doi:10.1038/s41467-025-67052-5 [paper, repository]

Assembly and lipid-gating of LRRC8A:D volume-regulated anion channels.

Journal: Nature communications

Authors' code: Zenodo 16921648 (CC-BY-4.0), Latorraca-Lab/CAVER_PROTEIN_TUNNEL_PROCESSING (MIT)

Status: code verified, 8 files readable

[9812] doi:10.1038/s41539-025-00390-7 [paper, repository]

Reading experience reveals shared and idiosyncratic neural patterns during text comprehension.

Journal: NPJ science of learning

Authors' code: OSF 7h3y2 (no license)

Status: code verified, 3 files readable

[9813] doi:10.1038/s41597-025-06311-y [paper, repository]

A large-scale dataset of pre- and postsurgical MRI data from patients with chronic trigeminal neuralgia.

Journal: Scientific data

Authors' code: UNFmontreal/Dcm2Bids (GPL-3.0)

Status: code verified, 32 files readable, 1 match

[9814] doi:10.1038/s41598-025-28512-6 [paper]

Shallow entangled circuits for quantum time series prediction on IBM devices.

Journal: Scientific reports

Status: code on request

[9815] doi:10.1038/s41598-025-30552-x [paper, data]

Threat-related corticocortical connectivity elicited by rapid auditory looms.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9816] doi:10.1038/s41598-025-31622-w [paper, data]

Proteasomal activity and disease outcome in phenylketonuria patients with a structural SLC7A5 variant.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9817] doi:10.1038/s41598-025-32189-2 [paper, repository]

Indirect experiential grounding: semantic similarity of abstract scientific concepts is reflected in activity patterns in visual and motor cortex.

Journal: Scientific reports

Authors' code: rsatoolbox.readthedocs.io (no license), OSF 82utn (no license)

Status: code verified

[9818] doi:10.1073/pnas.2513319122 [paper, repository]

Spiking world model with multicompartment neurons for model-based reinforcement learning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Brain-Cog-Lab/Spiking-WM (Apache-2.0)

Status: code verified, 15 files readable

[9819] doi:10.1073/pnas.2533074122 [paper, repository]

Correction for Pospisil and Pillow, Revisiting the high-dimensional geometry of population responses in the visual cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: dapospisil/revisit_hid_geom (no license)

Status: code verified, 27 files readable

[9820] doi:10.1080/07853890.2025.2597624 [paper, data]

HDAC1 dysregulation promotes pro-inflammatory microglial activation and aggravates post-stroke neuroinflammation.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[9821] doi:10.1093/biomethods/bpaf090 [paper, repository]

The protocol for mesoscopic wide-field optical imaging in mice: from zero to hero.

Journal: Biology methods & protocols

Authors' code: natalia1896/WIFIOPIA (no license)

Status: code verified, 18 files readable, 8 matches

[9822] doi:10.1097/pr9.0000000000001353 [paper, repository]

Neural and psychosocial signatures of the comorbidity between pain and affective symptoms.

Journal: Pain reports

Authors' code: imagen-project.org/the-imagen-dataset (no license), OSF kngfb (no license)

Status: code verified, 15 files readable, 5 matches

[9823] doi:10.1111/jopy.70036 [paper, repository]

Narcissism Is Associated With Blunted Error-Related Brain Activity.

Journal: Journal of personality

Authors' code: OSF gubyp (no license)

Status: code verified, 3 files readable, 2 matches

[9824] doi:10.1126/sciadv.adv8128 [paper, data]

Integrated single-cell atlases unveil the operation principles of whole-brain 5-HT neuronal subsystems.

Journal: Science advances

Status: data only, 2 datasets cited

[9825] doi:10.1126/sciadv.adw4970 [paper, repository]

Constructing biologically constrained RNNs via Dale's backpropagation and topologically informed pruning.

Journal: Science advances

Authors' code: hchoilab/biologicalrnns (MIT), hchoilab.github.io/biologicalrnns (no license), Zenodo 15620871 (MIT)

Status: code verified, 56 files readable, 5 matches

[9826] doi:10.1159/000549641 [paper, data]

Balance on the Brain: Facilitators and Barriers of Intervention Implementation.

Journal: Gerontology

Status: data only, 1 dataset cited

[9827] doi:10.1159/000549988 [paper, data]

Mineralizing Microangiopathy Presenting as Pediatric Stroke: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[9828] doi:10.1159/000550076 [paper, data]

Epilepsy Surgery in Drug-Resistant Epilepsy Facilitated by Artificial Intelligence: A Case of Left Temporal Encephalocele.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[9829] doi:10.1162/imag.a.1055 [paper, repository]

Functional connectivity between the uncinate fasciculus and frontotemporal semantic system supports reading comprehension in adolescents.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: vuiis/scz-wm-pipeline (no license), EBRL/ImagingNeuroscience_ReadingWhiteGrayMatterfMRI (no license)

Status: code verified, 309 files readable, 2 matches

[9830] doi:10.1186/s12883-025-04578-7 [paper, repository]

Age-dependent recovery of white matter integrity after surgical correction in children with infantile esotropia.

Journal: BMC neurology

Authors' code: yeatmanlab/AFQ (gnu)

Status: code verified, 180 files readable, 7 matches

[9831] doi:10.1186/s12974-025-03628-8 [paper, data]

MiR-106a-5p in extracellular vesicles derived from alveolar epithelial cells mediates cognitive dysfunction induced by chronic intermittent hypoxia in mice through MAPK signaling pathway.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[9832] doi:10.1186/s40168-025-02226-3 [paper, data]

Fetal programming by the parental microbiome of offspring behavior, and DNA methylation and gene expression within the hippocampus.

Journal: Microbiome

Status: data only, 1 dataset cited

[9833] doi:10.1371/journal.pcbi.1013764 [paper, repository]

PyFibers: An open-source NEURON-Python package to simulate responses of model nerve fibers to electrical stimulation.

Journal: PLoS computational biology

Authors' code: Zenodo 17068760 (CC-BY-4.0), Zenodo 5136631 (MIT), Zenodo 10608262 (GPL-2.0), Zenodo 15825841 (GPL-2.0), Zenodo 22921429 (CC-BY-4.0), Zenodo 22904322 (CC-BY-4.0), Zenodo 19595192 (CC-BY-4.0), Zenodo 22708608 (CC-BY-4.0), Zenodo 22697954 (CC-BY-4.0), Zenodo 21499046 (CC-BY-4.0), Zenodo 22030929 (CC-BY-4.0), Zenodo 21966787 (CC-BY-4.0), Zenodo 18774046 (CC-BY-4.0), Zenodo 17967056 (CC-BY-4.0)

Status: code verified, 1,569 files readable, 25 matches

[9834] doi:10.1523/eneuro.0184-25.2025 [paper, data]

Multiplexed smFISH Reveals the Spatial Organization of Neuropil Localized mRNAs Is Linked to Abundance.

Journal: eNeuro

Status: data only, 12 datasets cited

[9835] doi:10.3389/fnimg.2025.1653206 [paper, repository]

Global signal regression reduces connectivity patterns related to physiological signals and does not alter EEG-derived connectivity.

Journal: Frontiers in neuroimaging

Authors' code: mkassinopoulos/PRF_estimation (no license)

Status: code verified, 16 files readable, 3 matches

[9836] doi:10.3389/fnins.2025.1695464 [paper, data]

Isogenic iPSC-derived <i>CTBP1</i> mutant neuronal cells exhibit neurodevelopmental defects.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[9837] doi:10.3389/fnins.2025.1716204 [paper, data]

A hybrid Spiking Neural Network-Transformer architecture for motor imagery and sleep apnea detection.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[9838] doi:10.3390/biomimetics10120832 [paper, data]

Robust Motor Imagery-Brain-Computer Interface Classification in Signal Degradation: A Multi-Window Ensemble Approach.

Journal: Biomimetics (Basel, Switzerland)

Status: data only, 1 dataset cited

[9839] doi:10.3390/jimaging11120444 [paper, data]

AI-Driven Clinical Decision Support System for Automated Ventriculomegaly Classification from Fetal Brain MRI.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[9840] doi:10.3390/ph18121883 [paper, data]

Morin Alleviates Fructose-Driven Disturbance of Podocyte Mitochondrial Energy Metabolism by Inhibiting Adenosine 5'-Monophosphate Deaminase Activity to Improve Glomerular Injury.

Journal: Pharmaceuticals (Basel, Switzerland)

Status: data only, 1 dataset cited

[9841] doi:10.3390/v17121608 [paper]

Long-Term Transcriptomic Reprogramming in Peripheral Blood Mononuclear Cells of Severe COVID-19 Survivors Reveals Pro-Oncogenic Signatures and Cancer-Associated Hub Genes.

Journal: Viruses

Status: data only

[9842] doi:10.64898/2025.12.10.693579 [paper, repository]

Serotonergic neuron-glioma interactions drive high-grade glioma pathophysiology

Journal: bioRxiv (preprint)

Authors' code: theMILOlab (no license), Zenodo 22040374 (MIT)

Status: code verified, 12 files readable, 1 match

[9843] doi:10.64898/2025.12.11.693658 [paper, repository]

The Connectome Modulates Critical Brain Dynamics Across Local and Global Scales

Journal: bioRxiv (preprint)

Authors' code: grabuffo/Multiscale_Brain_Criticality (no license)

Status: code verified, 40 files readable, 6 matches

[9844] doi:10.7554/elife.106194 [paper, repository]

Virtual Brain Inference (VBI), a flexible and integrative toolkit for efficient probabilistic inference on whole-brain models.

Journal: eLife

Authors' code: ins-amu/vbi (Apache-2.0)

Status: code verified, 128 files readable, 31 matches

Thursday, 11 December 2025 (56 papers, 12 on this page)

[9845] doi:10.1007/s11357-025-02027-4 [paper, repository]

Your brain doesn't look a day past 70! Cross-sectional associations with brain-predicted age in the cognitively-intact oldest-old.

Journal: GeroScience

Authors' code: OSF ax93d (no license)

Status: code verified, 5 files readable, 5 matches

[9846] doi:10.1007/s11357-025-02039-0 [paper, repository]

Cognitive training effects are shaped more by individual brain dynamics than age-evidence from younger and older women.

Journal: GeroScience

Authors' code: OSF kc9br (no license)

Status: code verified, 4 files readable, 7 matches

[9847] doi:10.1007/s11357-025-02046-1 [paper, repository]

Deep neural networks and genome-wide associations reveal the polygenic architecture of local brain aging.

Journal: GeroScience

Authors' code: SamAndTheSun/greatbrowser (MIT), lmcinnes/umap (BSD-3-Clause)

Status: code verified, 72 files readable, 4 matches

[9848] doi:10.1016/j.celrep.2025.116661 [paper]

Mycobacteria trehalose dimycolate interactions with host Mincle remodel blood-brain barrier junctions for brain invasion.

Journal: Cell reports

Status: code on request

[9849] doi:10.1016/j.celrep.2025.116664 [paper, repository]

Neuronal hyperactivity becomes mTORC1 independent due to transcriptional changes in tuberous sclerosis complex disease models.

Journal: Cell reports

Authors' code: doi:10.7910/dvn/n6hw6m (no license)

Status: code found, still to be checked

[9850] doi:10.1016/j.celrep.2025.116672 [paper, repository]

Parietal cortex is causally required for state-dependent decisions.

Journal: Cell reports

Authors' code: Zenodo 17478824 (CC-BY-4.0), acbandi213/bandi---runyan-2024 (no license)

Status: code verified, 34 files readable, 15 matches

[9851] doi:10.1016/j.celrep.2025.116682 [paper, repository]

The relevance of context in memory tasks influences the magnitude of hippocampal remapping.

Journal: Cell reports

Authors' code: Zenodo 17488388 (CC-BY-4.0), ewellneurolab/discrimination-ca1 (no license)

Status: code verified, 230 files readable, 14 matches

[9852] doi:10.1016/j.celrep.2025.116685 [paper, repository]

A human CAGinSTEM platform for decoding HTT repeats' somatic instability links CAG interruption to HD pathology in neurons.

Journal: Cell reports

Authors' code: GianlucaDamaggio/T-Rex (GPL-3.0)

Status: code verified, 5 files readable, 2 matches

[9853] doi:10.1016/j.isci.2025.114387 [paper]

Sensory modality shapes post-learning functional connectivity.

Journal: iScience

Status: code on request

[9854] doi:10.1016/j.isci.2025.114388 [paper]

RNAi-based screen for pigmentation in <i>Drosophila melanogaster</i> reveals regulators of brain dopamine and sleep.

Journal: iScience

Status: code on request

[9855] doi:10.1016/j.isci.2025.114390 [paper, repository]

The encoding of interoceptive-based predictions by the paraventricular nucleus of the thalamus D2R+ neurons.

Journal: iScience

Authors' code: gloewing/fastFMM (no license)

Status: code verified, 16 files readable

[9856] doi:10.1016/j.isci.2025.114426 [paper, data]

Proximal procrastination of saccades: "paradoxical" delays to larger objects explained by a simple payoff-time heuristic.

Journal: iScience

Status: code on request, 1 dataset cited

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