Every paper, by date: page 46

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 46 of 200: 5 December 2025 to 1 December 2025.

Friday, 5 December 2025 (40 papers, 5 on this page)

[10081] doi:10.3390/ijms262411781 [paper, repository]

Extract of <i>Bacopa procumbens</i> Mitigates Brain Injury and Improves Functional Outcomes Following Ischemia-Reperfusion.

Journal: International journal of molecular sciences

Authors' code: pubchem.ncbi.nlm.nih.gov (no license)

Status: code verified

[10082] doi:10.3390/s25247415 [paper, repository]

Decision Support Systems in Neurosurgery: Current Applications and Future Directions.

Journal: Sensors (Basel, Switzerland)

Authors' code: YosefLab/totalVI_reproducibility (no license)

Status: code verified, 41 files readable

[10083] doi:10.64898/2025.12.04.25341605 [paper, repository]

Epigenomic embedding of childhood adversity links to disease risk and chronic immune changes

Journal: medRxiv (preprint)

Authors' code: darinacz/contextual_meQTLs (no license)

Status: dead link

[10084] doi:10.7554/elife.89189 [paper, repository]

Sex differences in BNST signaling and BNST CRF in fear processing.

Journal: eLife

Authors' code: oliviahon/FiberPho (no license)

Status: code verified, 6 files readable, 3 matches

[10085] doi:10.7554/elife.89908 [paper, repository]

Neural correlates and reinstatement of recent and remote memory in children and young adults.

Journal: eLife

Authors' code: iryna1schommartz/memokid_fmri (no license)

Status: code verified, 14 files readable, 1 match

Thursday, 4 December 2025 (46 papers)

[10086] doi:10.1007/s12035-025-05409-z [paper]

Inflammatory microglia signals drive A1-like polarization of astrocytes even in the presence of HIV-1 Tat.

Journal: Molecular neurobiology

Status: data only

[10087] doi:10.1016/j.apsb.2025.12.005 [paper, data]

The Kv4.3 channel on c-low threshold mechanoreceptors in DRG is a key mediator transforming tactile stimuli into nociceptive signals in chemotherapy-induced neuropathy.

Journal: Acta pharmaceutica Sinica. B

Status: data only, 1 dataset cited

[10088] doi:10.1016/j.bpsgos.2025.100663 [paper, repository]

μ Opioid Modulation of Sensorimotor Functional Connectivity in Autism: Insights From a Pharmacological Neuroimaging Investigation Using Tianeptine.

Journal: Biological psychiatry global open science

Authors' code: misho-dimitrov/Tianeptine_wDC (MIT)

Status: code verified, 19 files readable, 2 matches

[10089] doi:10.1016/j.cub.2025.11.011 [paper, repository]

Neurons in auditory cortex integrate information within a constrained and context-invariant temporal window.

Journal: Current biology : CB

Authors' code: snormanhaignere/TCI (no license), magdalenasabat/TCI-ferret (no license)

Status: code verified, 411 files readable, 6 matches

[10090] doi:10.1016/j.jgeb.2025.100615 [paper, data]

Integrative analysis of transcriptomics and drug-target networks identifies SMN1 as a novel biomarker and therapeutic target for amyotrophic lateral sclerosis.

Journal: Journal, genetic engineering & biotechnology

Status: data only, 1 dataset cited

[10091] doi:10.1016/j.pneurobio.2025.102865 [paper, repository]

Divergence of cortical neurophysiology across different neurodegenerative disorders compared to healthy ageing.

Journal: Progress in neurobiology

Authors' code: ajquinn/glmtools (no license), Zenodo 10401793 (CC-BY-4.0), Zenodo 6875060 (BSD-3-Clause)

Status: code verified, 87 files readable, 4 matches

[10092] doi:10.1016/j.stemcr.2025.102723 [paper]

Hypoxic stress is an early pathogenic event in human VCP-mutant ALS astrocytes.

Journal: Stem cell reports

Status: code on request

[10093] doi:10.1016/j.xpro.2025.104223 [paper, repository]

Protocol for the measurement and analysis of human photoencephalographic signals.

Journal: STAR protocols

Authors' code: Zenodo 15830349 (CC-BY-4.0)

Status: code verified, 18 files readable, 32 matches

[10094] doi:10.1038/s41467-025-67012-z [paper, repository]

Graded encoding of spatial novelty scales in the human brain.

Journal: Nature communications

Authors' code: cognizelab/SpaNovVR (GPL-3.0), JAQuent/Object-Location-Memory-Task (GPL-3.0)

Status: code verified, 39 files readable, 9 matches

[10095] doi:10.1038/s41467-025-67021-y [paper, repository]

Histone deacetylase SIRT6 regulates tryptophan catabolism and prevents metabolite imbalance associated with neurodegeneration.

Journal: Nature communications

Authors' code: sirt6/kaluski_et_al_2024 (no license), Zenodo 17250775 (CC-BY-4.0)

Status: code verified, 18 files readable, 4 matches

[10096] doi:10.1038/s41592-025-02896-9 [paper, repository]

Latent space-based network analysis for brain-behavior linking in neuroimaging.

Journal: Nature methods

Authors' code: selenashuowang/latentSNA (no license)

Status: code verified, 23 files readable, 2 matches

[10097] doi:10.1038/s41597-025-06165-4 [paper, repository]

LLaMAC: low-cost biosignal sensor based large multimodal dataset for affective computing.

Journal: Scientific data

Authors' code: figshare 28748696 (CC-BY-4.0)

Status: code verified, 4 files readable, 9 matches

[10098] doi:10.1038/s41597-025-06173-4 [paper, repository]

Hi-C sequencing data from frontal cortex of laboratory rats.

Journal: Scientific data

Authors' code: aidenlab/juicer (MIT), distilledchild/rat-cortex-hic-descriptor (no license)

Status: code verified, 106 files readable, 4 matches

[10099] doi:10.1038/s41598-025-21252-7 [paper, repository]

Revealing neural resonance in neuronal ensembles through frequency response tests.

Journal: Scientific reports

Authors' code: OSF bk6ew (no license)

Status: code found, still to be checked

[10100] doi:10.1038/s41598-025-27246-9 [paper, data]

An explainable machine learning-based approach to predicting treatment response for neurofeedback in ADHD.

Journal: Scientific reports

Status: data only, 2 datasets cited

[10101] doi:10.1038/s41598-025-27303-3 [paper, data]

MedShieldFL-a privacy-preserving hybrid federated learning framework for intelligent healthcare systems.

Journal: Scientific reports

Status: data only, 3 datasets cited

[10102] doi:10.1038/s41598-025-28221-0 [paper, data]

Alzheimer disease predicting from clinical and MRI data using DeepALZNET dual pathway framework.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10103] doi:10.1038/s41598-025-28338-2 [paper, repository]

Dosage effect of copy number variation in epilepsy and ten regions of the human brain.

Journal: Scientific reports

Authors' code: DE-Tisham/MultiPhenv2.1.8 (no license), DE-Tisham/CNV-dosage (GPL-3.0), lachlancoin/MultiPhen (no license), imperial.ac.uk/people/l.coin (no license)

Status: code verified, 17 files readable, 1 match

[10104] doi:10.1038/s41598-025-28855-0 [paper, repository]

ReHA-Net: a ReVIN-hybrid attention network with multiscale convolution for robust EEG artifact removal in brain-computer interfaces.

Journal: Scientific reports

Authors' code: ncclabsustech/EEGdenoiseNet (MIT)

Status: code verified, 67 files readable, 4 matches

[10105] doi:10.1038/s41598-025-30806-8 [paper, data]

SATrans-Net: Sparse Attention Transformer for EEG-based motor imagery decoding.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10106] doi:10.1038/s41598-025-30913-6 [paper, data]

An efficient dimensionality reduction framework using metaheuristic optimization with deep learning models for amyotrophic lateral sclerosis disease progression prediction.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10107] doi:10.1038/s41598-025-31005-1 [paper, data]

Research on the automation of intelligent accounting information processing process driven by neural networks.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10108] doi:10.1038/s42003-025-09181-7 [paper, repository]

Brain metabolic-functional (de)coupling from health to glioma dysfunction.

Journal: Communications biology

Authors' code: danizoeller/myPLS (GPL-2.0)

Status: code verified, 37 files readable, 4 matches

[10109] doi:10.1093/braincomms/fcaf477 [paper, repository]

From acute neglect to chronic constructional deficits: parietotemporal contributions to long-term post-stroke impairments.

Journal: Brain communications

Authors' code: Jiesong2358/SVR-LSM (no license)

Status: code verified, 6 files readable, 5 matches

[10110] doi:10.1093/nsr/nwaf551 [paper, repository]

Neuromorphic spike-based large language model.

Journal: National science review

Authors' code: BICLab (no license)

Status: code verified

[10111] doi:10.1097/j.pain.0000000000003851 [paper, repository]

Transcranial direct current stimulation of primary motor cortex reduces thermal pain.

Journal: Pain

Authors' code: canlab/stimMAP_2025 (no license)

Status: empty repository, 1 file readable

[10112] doi:10.1111/acel.70310 [paper, repository]

Biological Aging Acceleration in Major Depressive Disorder: A Multi-Omics Analysis.

Journal: Aging cell

Authors' code: kuo-lab-uchc/GWAS (no license)

Status: empty repository, 1 file readable

[10113] doi:10.1111/acel.70311 [paper, data]

PBX1 Improves Cognition and Reduces Amyloid-β Pathology in APP/PS1 Mice by Transcriptionally Activating the CRTC2-CREB Pathway.

Journal: Aging cell

Status: data only, 1 dataset cited

[10114] doi:10.1111/bpa.70056 [paper, data]

Tau-targeting active immunotherapy slows progression and reduces pathology in mouse models of tauopathy.

Journal: Brain pathology (Zurich, Switzerland)

Status: data only, 6 datasets cited

[10115] doi:10.1113/jp288411 [paper, repository]

Amacrine cell inputs to OFF midget ganglion cells in macaque retina.

Journal: The Journal of physiology

Authors' code: neitzlab/sbfsem-tools (MIT)

Status: code verified, 643 files readable

[10116] doi:10.1186/s12883-025-04551-4 [paper, data]

Integrating single-cell RNA-Seq and machine learning to dissect a novel Palmitoylation-related prognostic signature of glioblastoma.

Journal: BMC neurology

Status: data only, 1 dataset cited

[10117] doi:10.1186/s12964-025-02528-x [paper, data]

Long-tailed class I myosins rely on tail-mediated phosphoinositide recognition for specific membrane recruitment.

Journal: Cell communication and signaling : CCS

Status: data only, 1 dataset cited

[10118] doi:10.1186/s40644-025-00967-w [paper, data]

Development and validation of a convolutional neural network for automatic differentiation of primary central nervous system lymphoma and glioblastoma.

Journal: Cancer imaging : the official publication of the International Cancer Imaging Society

Status: data only, 1 dataset cited

[10119] doi:10.1371/journal.pone.0335952 [paper, data]

Brain tumour segmentation in fused MRI-PET images with permutate U-Net framework.

Journal: PloS one

Status: data only, 1 dataset cited

[10120] doi:10.1371/journal.pone.0337470 [paper, repository]

Abnormal brain network reconfiguration in neuropsychiatric disorders across cognitive decline, Depression, and Schizophrenia.

Journal: PloS one

Authors' code: commdetect.weebly.com (no license)

Status: code verified

[10121] doi:10.1371/journal.pone.0337834 [paper, data]

Object location memories recruit distal CA1 and catecholaminergic inputs to proximodistal CA1.

Journal: PloS one

Status: data only, 1 dataset cited

[10122] doi:10.1371/journal.pone.0338035 [paper, repository]

Limitations of multiexponential T1 mapping of cortical myeloarchitecture.

Journal: PloS one

Authors' code: JakubJamarik/multiexponential-t1-mapping (GPL-3.0)

Status: code verified, 28 files readable

[10123] doi:10.1371/journal.pone.0338190 [paper, data]

Housing environment bilaterally alters transcriptomic profile in the rat hippocampal CA1 region.

Journal: PloS one

Status: data only, 1 dataset cited

[10124] doi:10.3389/fnbeh.2025.1673093 [paper, data]

Bright light exposure reduces negative affect and modulates EEG activity in sleep-deprived and well-rested adolescents.

Journal: Frontiers in behavioral neuroscience

Status: data only, 2 datasets cited

[10125] doi:10.3389/fradi.2025.1686780 [paper, data]

H-VIP: quantifying regional topological contributions of the brain network to cognition.

Journal: Frontiers in radiology

Status: data only, 1 dataset cited

[10126] doi:10.3390/cells14231929 [paper, data]

PeriTox-M, a Cell-Based Assay for Peripheral Neurotoxicity with Improved Sensitivity to Mitochondrial Inhibitors.

Journal: Cells

Status: data only, 1 dataset cited

[10127] doi:10.3390/s25237382 [paper, data]

Intraocular Cytokine Level Prediction from Fundus Images and Optical Coherence Tomography.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[10128] doi:10.34133/research.0984 [paper, repository]

Long-Term Brain-Computer Interface Functional Electrical Stimulation Enhances Neuroplasticity and Functional Recovery in Elderly Stroke: A 4.5-Year Longitudinal Study Integrating Electroencephalography Biomarkers and Clinical Assessments.

Journal: Research (Washington, D.C.)

Authors' code: supp:PMC12677916/research.0984.f1.zip (no license)

Status: empty repository

[10129] doi:10.64898/2025.12.03.692036 [paper, data]

A paradoxical impact of alcohol on sleep-memory coupling

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[10130] doi:10.7554/elife.108331 [paper, repository]

Ptbp1 is not required for retinal neurogenesis and cell fate specification.

Journal: eLife

Authors' code: csanti88/ptbp1_2025 (MIT)

Status: code verified, 7 files readable, 6 matches

[10131] doi:10.7554/elife.93554 [paper, repository]

Sub-surface deformation of individual fingerprint ridges during tactile interactions.

Journal: eLife

Authors' code: doi:10.5061/dryad.0vt4b8hbz (no license)

Status: code verified

Wednesday, 3 December 2025 (41 papers)

[10132] doi:10.1007/s00401-025-02968-2 [paper, data]

Nucleolar aggregation of key neuropathological proteins in the postmortem neurodegenerative brain.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[10133] doi:10.1016/j.apsb.2025.12.002 [paper]

OTUD6A drives dopaminergic neuronal degeneration of Parkinson's disease through deubiquitinating ACTG1 in neuronal cells.

Journal: Acta pharmaceutica Sinica. B

Status: data only

[10134] doi:10.1016/j.crmeth.2025.101247 [paper, repository]

Approaches for identification of 5' UTR mutations impacting translation and protein production from neurodevelopmental disorder genes.

Journal: Cell reports methods

Authors' code: jdlabteam/fiveprime_mpra_pub (no license), Zenodo 17459278 (CC-BY-4.0)

Status: code verified, 63 files readable, 16 matches

[10135] doi:10.1016/j.dcn.2025.101654 [paper, data]

Developmental differences in hippocampal long-axis contributions to memory precision.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[10136] doi:10.1016/j.isci.2025.114313 [paper, repository]

Deriving connectivity from spiking activity in detailed models of large-scale cortical microcircuits.

Journal: iScience

Authors' code: Zenodo 7016054 (other-open), Zenodo 5771000 (CC-BY-4.0), agmccrei/humanl5circuit_agm2022 (GPL-3.0)

Status: code verified, 731 files readable, 3 matches

[10137] doi:10.1016/j.isci.2025.114320 [paper]

ABCA1 acts as a protective modulator in amyotrophic lateral sclerosis.

Journal: iScience

Status: code on request

[10138] doi:10.1016/j.isci.2025.114324 [paper]

Decoding IFN-mediated immunity and cell dynamics in viral encephalitis: Insights from coxsackievirus B3 infection.

Journal: iScience

Status: code on request

[10139] doi:10.1016/j.jneumeth.2025.110647 [paper, repository]

NERV: A comprehensive framework for rapid, reproducible, and hardware-synchronized neuroscience experiment design and execution.

Journal: Journal of neuroscience methods

Authors' code: kylecoutray/NERV (MIT), nervframework.com (no license), kylecoutray/NERV_PD_TEST (no license)

Status: code verified, 5 files readable, 1 match

[10140] doi:10.1016/j.patter.2025.101427 [paper, repository]

Node persistence from topological data analysis reveals changes in brain functional connectivity.

Journal: Patterns (New York, N.Y.)

Authors' code: asamallab/Curvature-FCN-Aging (MIT), asamallab/Curvature-FCN-ASD (no license), asamallab/NodePersistence_PH_FCM (no license), Zenodo 17340938 (CC-BY-4.0)

Status: code verified, 79 files readable, 6 matches

[10141] doi:10.1016/j.xcrm.2025.102470 [paper, repository]

Frontoparietal network mediates the antidepressant effects of accelerated iTBS and cTBS: TMS-EEG study.

Journal: Cell reports. Medicine

Authors' code: thexche/TMS-EEG-data-analysis-for-the-aitbs-and-actbs-trial (no license)

Status: code verified, 7 files readable, 2 matches

[10142] doi:10.1016/j.xpro.2025.104235 [paper, repository]

Protocol for inferring cell type relationships and linking genomic annotations to cell type hierarchies using CellWalker2.

Journal: STAR protocols

Authors' code: pfprzytycki/cellwalkr (GPL-2.0), Zenodo 16103696 (CC-BY-4.0)

Status: code verified, 40 files readable, 40 matches

[10143] doi:10.1038/s41467-025-66613-y [paper, repository]

Laminar organization of pyramidal neuron cell types defines distinct CA1 hippocampal subregions.

Journal: Nature communications

Authors' code: ramin-ali-marandi-ghoddousi/SCAMPR (Apache-2.0)

Status: code verified, 16 files readable, 1 match

[10144] doi:10.1038/s41467-025-66818-1 [paper, data]

Ultrafast neural sampling with spiking nanolasers.

Journal: Nature communications

Status: data only, 1 dataset cited

[10145] doi:10.1038/s41597-025-06183-2 [paper, repository]

A multimodal neuroimaging dataset for investigating speech perceptual normalization.

Journal: Scientific data

Authors' code: OSF b3jhs (no license)

Status: code verified, 3 files readable

[10146] doi:10.1038/s41597-025-06189-w [paper, data]

An EEG Dataset on Aesthetic and Creative Judgments of Brief Structured Poetry.

Journal: Scientific data

Status: data only, 2 datasets cited

[10147] doi:10.1038/s42003-025-09074-9 [paper, data]

Inhba, Homer1 and Bdnf are major targets of transcriptomic dysregulation by neurodegenerative disease-associated excitotoxic NMDA receptor signaling.

Journal: Communications biology

Status: data only, 1 dataset cited

[10148] doi:10.1038/s44319-025-00646-8 [paper]

TMEM251 loss-induced autophagy dysfunction in the anterior cingulate cortex contributes to chronic postoperative pain.

Journal: EMBO reports

Status: data only

[10149] doi:10.1073/pnas.2521762122 [paper, repository]

Reconstructing Waddington's landscape from data.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: DillonCislo/WaddingtonPathIntegralDynamics (GPL-3.0)

Status: code verified, 1,871 files readable, 9 matches

[10150] doi:10.1093/braincomms/fcaf474 [paper, repository]

20 Hz beta stimulation of the subthalamic nucleus improves response inhibition in Parkinson's disease.

Journal: Brain communications

Authors' code: OSF s4utw (no license)

Status: code verified, 13 files readable, 2 matches

[10151] doi:10.1101/gr.280803.125 [paper, repository]

Unified integration of spatial transcriptomics across platforms with LLOKI.

Journal: Genome research

Authors' code: ma-compbio/Lloki (MIT)

Status: code verified, 13 files readable, 10 matches

[10152] doi:10.1126/sciadv.adv8224 [paper, data]

State-dependent modulation of spiny projection neurons controls levodopa-induced dyskinesia in a mouse model of Parkinson's disease.

Journal: Science advances

Status: data only, 1 dataset cited

[10153] doi:10.1126/sciadv.adw7427 [paper, repository]

VTA dopaminergic neuronal activity during NREM sleep is modulated by learning and facilitates motor memory consolidation.

Journal: Science advances

Authors' code: Zenodo 17409953 (CC-BY-4.0)

Status: code verified

[10154] doi:10.1162/imag.a.1030 [paper, repository]

MRI-scale histology validates spatial sensitivity of in-vivo MRI-based axon radius estimation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: quantitative-mri-and-in-vivo-histology/mri_radius_validation (MIT)

Status: code verified, 88 files readable, 27 matches

[10155] doi:10.1162/imag.a.1041 [paper, repository]

Characterising the association between posterior parietal metabolite levels and cortical macrostructure in a cohort spanning childhood to adulthood.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: schorschinho/osprey (MIT)

Status: code verified, 487 files readable, 11 matches

[10156] doi:10.1162/imag.a.1048 [paper, repository]

Comparison of brain normalization software and lesion compensation techniques in chronic perinatal stroke imaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: bchcohenlab/Perinatal_Stroke_Brain_Normalization (no license), Zenodo 3885143 (other-open), bchcohenlab/bids_lesion_code (MIT)

Status: code verified, 42 files readable, 4 matches

[10157] doi:10.1186/s12916-025-04536-7 [paper, repository]

Sleep and physical activity trade-offs and dementia risk: a prospective cohort study in UK Biobank participants.

Journal: BMC medicine

Authors' code: BeaudanBrown/coda-dementia (no license)

Status: code verified, 21 files readable, 6 matches

[10158] doi:10.1186/s13072-025-00644-z [paper, data]

Local chromatin context informs transcriptional outcomes for the histone demethylase KDM5.

Journal: Epigenetics & chromatin

Status: data only, 1 dataset cited

[10159] doi:10.1186/s40478-025-02162-1 [paper, data]

Spatial transcriptomics analysis uncovers ER stress in MANF-deficient Purkinje cells underlying alcohol-induced cerebellar neurodegeneration in mice.

Journal: Acta neuropathologica communications

Status: data only, 3 datasets cited

[10160] doi:10.1523/jneurosci.0454-25.2025 [paper, repository]

Identifying Key Regulators in Odorant Receptor Trafficking.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Justice-Lu/Chaperone_Analysis (no license), Justice-Lu/geLine_dash (no license)

Status: code verified, 9 files readable, 5 matches

[10161] doi:10.1523/jneurosci.0474-25.2025 [paper, repository]

Contents of Visual Predictions Oscillate at Alpha Frequencies.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF re6x7 (no license)

Status: code verified, 76 files readable, 17 matches

[10162] doi:10.1523/jneurosci.0657-25.2025 [paper, repository]

Attentional Engagement with Target and Distractor Streams Predicts Speech Comprehension in Multitalker Environments.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: vivienbarchet/target_dis_attention (no license)

Status: code verified, 39 files readable, 4 matches

[10163] doi:10.2147/jir.s539404 [paper, data]

Single-Cell RNA Sequencing Reveals Microglial Heterogeneity and Functional States After Cerebral Ischemia-Reperfusion Injury.

Journal: Journal of inflammation research

Status: data only, 1 dataset cited

[10164] doi:10.3389/fcimb.2025.1726007 [paper]

Distinct ZIKV strain signatures and type I IFN modulation reveal a protective role of brain endothelial interferon signaling <i>in vitro</i> and <i>in vivo</i>.

Journal: Frontiers in cellular and infection microbiology

Status: data only

[10165] doi:10.3389/fnagi.2025.1695806 [paper, data]

Abnormal subthalamic nucleus functional connectivity and machine learning classification in Parkinson's disease: a multisite functional magnetic resonance imaging study.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[10166] doi:10.3389/fnhum.2025.1676585 [paper, data]

Macroscopic quantum effects in the brain: new insights into the fundamental principle underlying conscious processes.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[10167] doi:10.3389/fnut.2025.1682419 [paper, repository]

The effects of <i>Lactobacillus</i> and/or <i>Bifidobacterium</i> in fermented foods on cognitive health: a systematic review.

Journal: Frontiers in nutrition

Authors' code: OSF z6grw (no license)

Status: empty repository

[10168] doi:10.64898/2025.12.01.691604 [paper, repository]

Modeling Hierarchical Brain Dynamics Outperforms Hormonal Biomarkers in Predicting Menstrual Cycle Phases

Journal: bioRxiv (preprint)

Authors' code: webapps.ccns.sbg.ac.at/opendata (no license), OSF 23d7x (no license), elviradelagua/irreversibility-menstrual-cycle (MIT)

Status: code verified, 13 files readable, 4 matches

[10169] doi:10.64898/2025.12.01.691619 [paper, data]

Directed cortico-limbic dialogue in the human brain

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[10170] doi:10.64898/2025.12.01.691701 [paper, repository]

Cognitive cartography of mammalian brains using meta-analysis of AI experts

Journal: bioRxiv (preprint)

Authors' code: Hana-Ali/neuroLLM (no license), neurosynth/neurosynth (MIT), netneurolab/hansen_receptors (CC-BY-NC-SA-4.0), dominance-analysis/dominance-analysis (MIT), netneurolab/hansen_many_networks (no license), brainnetworkslab.com/coderesources (no license)

Status: code verified, 99 files readable, 21 matches

[10171] doi:10.7554/elife.103781 [paper, repository]

The electrogenicity of the Na<sup>+</sup>/K<sup>+</sup>-ATPase poses challenges for computation in highly active spiking cells.

Journal: eLife

Authors' code: itbgit.biologie.hu-berlin.de/compneurophys_pub/electrocyte_nakatpase (no license), supp:PMC12674616/elife-103781-code1.zip (no license)

Status: code verified, 18 files readable, 2 matches

[10172] doi:10.7554/elife.105863 [paper, repository]

Dorsal hippocampus mediates light-tone associations in male mice.

Journal: eLife

Authors' code: abusquets85/Pinho-et-al.-eLife-Manuscript-2025 (GPL-3.0)

Status: code verified, 16 files readable, 5 matches

Tuesday, 2 December 2025 (52 papers)

[10173] doi:10.1002/acn3.70267 [paper]

Age-Related Characteristics of SYT1-Associated Neurodevelopmental Disorder.

Journal: Annals of clinical and translational neurology

Status: code on request

[10174] doi:10.1007/s10565-025-10109-4 [paper, data]

Exploring potential targets and molecular mechanisms of traumatic brain injury exacerbated by Benzo(a)pyrene via network toxicology and molecular dynamics simulation.

Journal: Cell biology and toxicology

Status: data only, 1 dataset cited

[10175] doi:10.1007/s11538-025-01557-4 [paper, repository]

Astrocyte Reprogramming Drives Tumor Progression and Chemotherapy Resistance in Agent-Based Models of Breast Cancer Brain Metastases.

Journal: Bulletin of mathematical biology

Authors' code: RupleenK/AstroTumor-ABM (MIT)

Status: code verified, 220 files readable, 14 matches

[10176] doi:10.1007/s12264-025-01538-6 [paper]

The Secondary Motor Cortex-External Globus Pallidus Pathway Regulates Auditory Feedback of Volitional Control.

Journal: Neuroscience bulletin

Status: code on request

[10177] doi:10.1007/s12975-025-01398-2 [paper, repository]

Clusters of Pediatric Brain Arteriovenous Malformations Link Spatial Distribution, Clinical Presentation, and Outcomes.

Journal: Translational stroke research

Authors' code: neurolabusc/NiiStat (GPL-2.0)

Status: code verified, 62 files readable

[10178] doi:10.1016/j.bbih.2025.101152 [paper, repository]

Socio-environmental and health-related factors and their association with longitudinal change in brain neuroimaging markers through the plasma metabolome among UK adults: An additive Bayesian network analysis.

Journal: Brain, behavior, & immunity - health

Authors' code: baydounm/UKB-paper18-supplementarydata (no license)

Status: code verified, 2 files readable, 2 matches

[10179] doi:10.1016/j.crmeth.2025.101244 [paper, repository]

Development and application of a barcoded rabies viral tracing method for mapping brain-wide inputs to single neurons.

Journal: Cell reports methods

Authors' code: constantAmateur/SoupX (gnu), CGATOxford/UMI-tools (MIT), Nik-Tavakolian/Shepherd (GPL-3.0)

Status: code verified, 62 files readable, 4 matches

[10180] doi:10.1016/j.crmeth.2025.101245 [paper, repository]

One-step approach producing barcoded rabies virus with optimized diversity.

Journal: Cell reports methods

Authors' code: Nik-Tavakolian/Shepherd (GPL-3.0), CGATOxford/UMI-tools (MIT)

Status: code verified, 45 files readable, 1 match

[10181] doi:10.1016/j.csbj.2025.12.001 [paper, repository]

Model-based evaluation of connexin hemichannel permeability.

Journal: Computational and structural biotechnology journal

Authors' code: thr3iog/detectron2-hela-cells-data-extractor (no license)

Status: code verified, 19 files readable, 4 matches

[10182] doi:10.1016/j.ebiom.2025.106053 [paper, data]

Neural synaptic vesicle autoimmunity following aerosolized porcine neural tissue exposure: insights into autoimmune inflammatory polyradiculoneuropathy.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[10183] doi:10.1016/j.ebiom.2025.106064 [paper, repository]

Metabolic inflammation, brain age and cognitive functioning in short- and long-term clinical weight loss trials.

Journal: EBioMedicine

Authors' code: slundberg/shap (MIT), Zenodo 17540342 (CC-BY-4.0)

Status: code verified, 99 files readable, 4 matches

[10184] doi:10.1016/j.ijpx.2025.100459 [paper, data]

Longitudinal pharmacokinetic and safety studies of an antibody-erythropoietin fusion protein for Alzheimer's disease.

Journal: International journal of pharmaceutics: X

Status: data only, 1 dataset cited

[10185] doi:10.1016/j.isci.2025.114305 [paper, repository]

LAMP2A regulates endosomal protein composition and membrane identity in exosome biogenesis.

Journal: iScience

Authors' code: r-graph-gallery.com (no license)

Status: code verified

[10186] doi:10.1016/j.xgen.2025.101079 [paper, repository]

Incomplete lineage sorting of segmental duplications defines the human chromosome 2 fusion site early during African great ape speciation.

Journal: Cell genomics

Authors' code: marbl/Primates (other), zhang-shilong/T2T-MFA8 (CC0-1.0), lh3/minimap2 (MIT), inab/trimal (GPL-3.0), vpc-ccg/sedef (MIT), talgalili/dendextend (no license), ms609/TreeDist (no license), sfu-compbio/mrsfast (BSD-3-Clause), thelovelab/DESeq2 (no license), YuLab-SMU/clusterProfiler (no license)

Status: code verified, 567 files readable, 4 matches

[10187] doi:10.1038/s41421-025-00835-8 [paper, data]

Single-cell profiling reveals a shared proinflammatory macrophage signature across multiple organs in myopia.

Journal: Cell discovery

Status: code on request, 1 dataset cited

[10188] doi:10.1038/s41467-025-66048-5 [paper, repository]

A spatial atlas of the complement system uncovers unique expression patterns in postnatal brain development in mice.

Journal: Nature communications

Authors' code: doi:10.5061/dryad.cnp5hqcbq (no license), ZhuangLab/MERFISH_analysis (other), Zenodo 17399249 (MIT)

Status: code verified, 91 files readable, 16 matches

[10189] doi:10.1038/s41467-025-66226-5 [paper, repository]

Aberrant neural activity in the peritumoral cortex underlies the progression of tumor-associated seizures.

Journal: Nature communications

Authors' code: ydtang/Seizure-model (no license), kthvdk/gaolabglioma (no license)

Status: code verified, 50 files readable, 5 matches

[10190] doi:10.1038/s41467-025-66553-7 [paper, repository]

Neural dissociation of attention and working memory through inhibitory control.

Journal: Nature communications

Authors' code: OSF v2qn9 (no license)

Status: code verified, 2 files readable

[10191] doi:10.1038/s41467-025-66914-2 [paper, data]

CAV2-expressing nerves induce metabolic switch toward mitochondrial oxidative phosphorylation to promote cancer stemness.

Journal: Nature communications

Status: data only, 1 dataset cited

[10192] doi:10.1038/s41592-025-02972-0 [paper, repository]

CaBLAM: a high-contrast bioluminescent Ca<sup>2+</sup> indicator derived from an engineered Oplophorus gracilirostris luciferase.

Journal: Nature methods

Authors' code: NICALab/SUPPORT (GPL-3.0), Shaner-Lab/CaBLAM (CC0-1.0)

Status: code verified, 46 files readable, 18 matches

[10193] doi:10.1038/s41598-025-29366-8 [paper]

Comparing deep learning CNN method with traditional MRI-based hippocampal segmentation and volumetry for early Alzheimer's disease diagnosis across diverse populations.

Journal: Scientific reports

Status: code on request

[10194] doi:10.1038/s42003-025-09122-4 [paper, repository]

Multi-modal label-free imaging of cellular metabolism and oxidative stress in 3D brain tissue models.

Journal: Communications biology

Authors' code: Zenodo 17228894 (CC-BY-4.0)

Status: code verified, 14 files readable

[10195] doi:10.1038/s42003-025-09128-y [paper, data]

Conditional Dmd ablation in muscle and brain causes profound effects on muscle function and neurobehavior.

Journal: Communications biology

Status: data only, 1 dataset cited

[10196] doi:10.1038/s44318-025-00654-3 [paper]

E3 ligase AREL1 controls perinuclear localization of lysosomes and supports Purkinje cell survival.

Journal: The EMBO journal

Status: data only

[10197] doi:10.1073/pnas.2511741122 [paper, data]

Erasable serum markers.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[10198] doi:10.1073/pnas.2516229122 [paper, repository]

Interoception vs. Exteroception: Cardiac interoception competes with tactile perception, yet also facilitates self-relevance encoding.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF yzmx4 (no license)

Status: code verified, 70 files readable, 27 matches

[10199] doi:10.1073/pnas.2517668122 [paper, data]

Core microRNAs regulate neural crest delamination and condensation in the developing trigeminal ganglion.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[10200] doi:10.1093/pnasnexus/pgaf347 [paper, data]

Less is more: Aesthetic liking is inversely related to metabolic expense by the visual system.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[10201] doi:10.1162/imag.a.1033 [paper]

What does my network learn? Assessing interpretability of deep learning for EEG.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[10202] doi:10.1186/s10194-025-02235-5 [paper, repository]

Causal proteomic insights into drug target discovery for tension-type headache.

Journal: The journal of headache and pain

Authors' code: WSpiller/RadialMR (GPL-3.0)

Status: code verified, 11 files readable, 4 matches

[10203] doi:10.1186/s12885-025-15319-x [paper, repository]

Pharmacological targeting and characterization of Voltage-Gated Sodium Channels (VGSCs) expressed in the high-grade glioma microenvironment.

Journal: BMC cancer

Authors' code: chloe-shard/Fletcher_et_al_2025 (no license)

Status: empty repository, 1 file readable

[10204] doi:10.1186/s12888-025-07640-3 [paper, repository]

SSRI-induced modulation of cytokines, barrier permeability, and BDNF in adolescent depression.

Journal: BMC psychiatry

Authors' code: gaofengjie-2019/adolescents_depression2025 (no license)

Status: code verified, 4 files readable

[10205] doi:10.1186/s13024-025-00903-3 [paper, repository]

DAP12 deletion reduces neuronal SLIT2 and demyelination and enhances brain resilience in female tauopathy mice.

Journal: Molecular neurodegeneration

Authors' code: lifan36/Chen-et-al-Dap12-2025 (no license)

Status: code verified, 5 files readable, 2 matches

[10206] doi:10.1186/s13293-025-00792-7 [paper, data]

Sex-dimorphic reprogramming of fetal mouse brain development by maternal estradiol excess.

Journal: Biology of sex differences

Status: data only, 9 datasets cited

[10207] doi:10.1186/s40001-025-03587-z [paper, repository]

Influence of early temperature trajectories on clinical outcomes in traumatic brain injury: a multicenter validation study using machine learning.

Journal: European journal of medical research

Authors' code: ningyile/BDMCC_APP (no license)

Status: empty repository, 1 file readable

[10208] doi:10.1186/s40364-025-00879-8 [paper, repository]

Non-invasive prediction of Ki-67 and p53 biomarkers in spinal ependymoma via deep learning: using multimodal magnetic resonance imaging and clinical data.

Journal: Biomarker research

Authors' code: Jimmy3270/Deep-Learning-Models-for-Spinal-Ependymoma (no license)

Status: code verified, 4 files readable, 5 matches

[10209] doi:10.1242/jeb.250429 [paper, repository]

Biosynthesis of long-chain omega-3 fatty acids by the nestlings of a generalist seabird.

Journal: The Journal of experimental biology

Authors' code: doi:10.5061/dryad.3r2280gsw (no license), Zenodo 14879632 (MIT)

Status: code verified, 1 file readable, 4 matches

[10210] doi:10.1364/boe.576516 [paper, data]

Miniaturized widefield microscope for high speed in vivo voltage imaging.

Journal: Biomedical optics express

Status: data only, 1 dataset cited

[10211] doi:10.1371/journal.pbio.3003231 [paper, repository]

Low-dose mixtures of dietary nutrients ameliorate behavioral deficits in multiple mouse models of autism.

Journal: PLoS biology

Authors' code: mortazavilab/PyWGCNA (MIT), HsuehYiPing/Tbr1Cocktail (MIT), Zenodo 17394195 (MIT)

Status: code verified, 44 files readable, 7 matches

[10212] doi:10.1371/journal.pone.0337007 [paper, data]

From data to diagnosis: An innovative approach to epilepsy prediction with CGTNet incorporating spatio-temporal features.

Journal: PloS one

Status: data only, 1 dataset cited

[10213] doi:10.1371/journal.pone.0337808 [paper, data]

ceRNA regulatory network and immune-neurodegenerative mechanisms of peripheral CD4+ T cells in parkinson's disease.

Journal: PloS one

Status: data only, 1 dataset cited

[10214] doi:10.1523/eneuro.0325-25.2025 [paper, repository]

Intrinsic Cell-Class-Specific Modulation of Intracellular Chloride Levels and Inhibitory Function, in Cortical Networks, between Day and Night.

Journal: eNeuro

Authors' code: mathworks.com/matlabcentral/fileexchange (no license)

Status: code verified

[10215] doi:10.26508/lsa.202503366 [paper, data]

GPR88 localization to primary cilia in neurons is cell-type specific.

Journal: Life science alliance

Status: data only, 1 dataset cited

[10216] doi:10.3389/fmedt.2025.1699821 [paper, data]

An advanced multimodal image fusion model for accurate detection of Alzheimer's disease using MRI and PET.

Journal: Frontiers in medical technology

Status: data only, 1 dataset cited

[10217] doi:10.3389/fnhum.2025.1707031 [paper, repository]

"PICS": a novel patient-specific landmark for thalamic surgical interventions in the posterior limb of the internal capsule signal.

Journal: Frontiers in human neuroscience

Authors' code: VincentStimper/mclahe (MIT)

Status: code verified, 7 files readable

[10218] doi:10.3389/fnins.2025.1683204 [paper]

APOE ε4 allele drives female-specific Alzheimer's disease progression via vascular dysfunction and tau spreading.

Journal: Frontiers in neuroscience

Status: data only

[10219] doi:10.3390/biom15121684 [paper, data]

Transcriptomic Profiles from Stereo-EEGs May Reflect the Local Brain Cell Microenvironment in Human Epilepsy.

Journal: Biomolecules

Status: data only, 1 dataset cited

[10220] doi:10.3390/cells14231915 [paper, data]

Extracellular Vesicles from iPSC-Derived Glial Progenitor Cells Prevent Glutamate-Induced Excitotoxicity by Stabilising Calcium Oscillations and Mitochondrial Depolarisation.

Journal: Cells

Status: data only, 1 dataset cited

[10221] doi:10.3390/s25237341 [paper, data]

Few-Shot and Zero-Shot Learning for MRI Brain Tumor Classification Using CLIP and Vision Transformers.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[10222] doi:10.64898/2025.11.28.691184 [paper, repository]

Dopamine and serotonin transients predict depressive symptom relief following deep brain stimulation of human subcallosal cingulate cortex

Journal: bioRxiv (preprint)

Authors' code: blairshevlin/shevlin-fu_volt-trd (GPL-3.0)

Status: code verified, 26 files readable, 5 matches

[10223] doi:10.64898/2025.12.01.691172 [paper]

Neuronal excitability is permanently altered by activity manipulation during an embryonic critical period in <i>Drosophila</i>

Journal: bioRxiv (preprint)

Status: code on request

[10224] doi:10.7554/elife.100159 [paper, data]

&lt;i&gt;Eed&lt;/i&gt; controls craniofacial osteoblast differentiation and mesenchymal proliferation from the neural crest.

Journal: eLife

Status: data only, 2 datasets cited

Monday, 1 December 2025 (110 papers, 80 on this page)

[10225] doi:10.1002/acm2.70373 [paper, repository]

mpMRI-based MGMT methylation status prediction for glioblastoma through off-the-shelf deep features: A multi-dataset feasibility study.

Journal: Journal of applied clinical medical physics

Authors' code: FORRESTHUACHEN/mpMRI_for_MGMT_Prediction- (no license)

Status: code verified, 5 files readable, 1 match

[10226] doi:10.1002/alz.70915 [paper, repository]

Locus coeruleus-entorhinal cortex tract integrity is linked to plasma tau and glial fibrillary acidic protein.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: robbert-harms/MDT (LGPL-3.0)

Status: code verified, 189 files readable, 3 matches

[10227] doi:10.1002/alz.70970 [paper, repository]

Enrichment of patients with concomitant limbic-predominant age-related TDP-43 encephalopathy (LATE) on the Alzheimer's disease continuum using hippocampal volume.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: pyushkevich/cmrep (GPL-3.0)

Status: code verified, 104 files readable

[10228] doi:10.1002/alz.70973 [paper, data]

Structural similarity networks reveal brain vulnerability in dementia.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[10229] doi:10.1002/alz.70982 [paper, data]

Blood gene expression network expression strongly relates to brain amyloid burden.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[10230] doi:10.1002/alz.71022 [paper, repository]

Associations between cerebral blood transit time, amyloid-β pathology and cognitive decline in non-demented older adults.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: hub.docker.com/r/wmhchallenge (no license)

Status: code verified

[10231] doi:10.1002/alz.71033 [paper]

PAK1 inhibitor NVS-PAK1-1 preserves dendritic spines in amyloid/tau exposed neurons and 5xFAD mice.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[10232] doi:10.1002/alz.71041 [paper, data]

Single-cell landscape of sex-specific drivers of Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request, 1 dataset cited

[10233] doi:10.1002/brb3.71098 [paper]

Identification of Key Biomarkers for Systemic Lupus Erythematosus Progression and Therapy Response: A Bulk RNA-Sequencing-Based Bioinformatics Study.

Journal: Brain and behavior

Status: data only

[10234] doi:10.1002/brb3.71110 [paper]

CCNE1 Exerts a Protective Effect on Parkinson's Disease by Regulating Ferroptosis-Related Proteins.

Journal: Brain and behavior

Status: data only

[10235] doi:10.1002/cam4.71454 [paper, data]

TMEM106A as a Macrophage-Associated Biomarker of Prognosis in IDH-Wildtype Glioma: Integrative Multi-Omics and Spatial Analyses.

Journal: Cancer medicine

Status: data only, 1 dataset cited

[10236] doi:10.1002/cns.70710 [paper, repository]

Functional Brain Connectivity Patterns of Headache-Mental Disorder Comorbidity in Patients With Migraine.

Journal: CNS neuroscience & therapeutics

Authors' code: danizoeller/myPLS (GPL-2.0)

Status: code verified, 37 files readable, 3 matches

[10237] doi:10.1002/dvg.70031 [paper, data]

ATRX: From Chromatin Remodeling to Disease.

Journal: Genesis (New York, N.Y. : 2000)

Status: data only, 1 dataset cited

[10238] doi:10.1002/hbm.70409 [paper, repository]

Prediction of Individual Melodic Contour Processing in Sensory Association Cortices From Resting State Functional Connectivity.

Journal: Human brain mapping

Authors' code: vidaurre/NetsPredict (MIT)

Status: code verified, 57 files readable

[10239] doi:10.1002/hbm.70416 [paper, repository]

Investigating the Neural Correlates of the Attention Training Technique Using a Novel fMRI Paradigm for Measuring Attentional Control.

Journal: Human brain mapping

Authors' code: OSF scbrj (no license)

Status: code verified, 19 files readable, 1 match

[10240] doi:10.1002/hbm.70417 [paper, repository]

In Vivo Quantification of White Matter Pathways in the Human Hippocampus.

Journal: Human brain mapping

Authors' code: OSF 9a2u4 (no license)

Status: code verified, 30 files readable, 11 matches

[10241] doi:10.1002/hbm.70419 [paper, data]

Inverse Association of Locus Coeruleus MRI Integrity With Structural Volume and Its Impact on Individual's Inattentiveness.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[10242] doi:10.1002/hbm.70421 [paper, repository]

Discordance Between Spatial and Population Correlations From Human Brain Imaging Data.

Journal: Human brain mapping

Authors' code: bozenne/article-mapping-fMRI-PET (no license)

Status: code verified, 13 files readable, 5 matches

[10243] doi:10.1002/hbm.70422 [paper, repository]

High Resolution Postmortem MRI Discovers Developing Structural Connectivity in the Human Ascending Arousal Network.

Journal: Human brain mapping

Authors' code: lillazollei/HBM2025 (no license)

Status: dead link

[10244] doi:10.1002/hbm.70427 [paper, repository]

Disrupted Energetic and Entropic Landscape in Individuals With Mild Cognitive Impairment: Insights From Network Control Theory.

Journal: Human brain mapping

Authors' code: dn3umann/nct-mci (no license)

Status: code verified, 3 files readable, 3 matches

[10245] doi:10.1002/hbm.70430 [paper]

Lexical Representations in the Common and Specific Neural Networks for Visual, Phonological, and Semantic Processing in Chinese Reading.

Journal: Human brain mapping

Status: code on request

[10246] doi:10.1002/hbm.70434 [paper, repository]

Network Neuroscience of Human Multitasking: Local Connections Matter.

Journal: Human brain mapping

Authors' code: faskowit/app-fmri-2-mat (MIT), OSF w9hsu (no license)

Status: code verified, 18 files readable, 5 matches

[10247] doi:10.1002/jcsm.70126 [paper, repository]

Intrinsic Motoneuron Excitability Differentiates Sarcopenic, Nonsarcopenic and Athletic Ageing Phenotypes.

Journal: Journal of cachexia, sarcopenia and muscle

Authors' code: orssatto/XXX (no license), orssatto/PICs-sarcopenia (no license)

Status: code verified, 5 files readable, 4 matches

[10248] doi:10.1002/jev2.70173 [paper, data]

Microglial Extracellular Vesicles Mediate C1q Deposition at the Pre-Synapse and Promote Synaptic Pruning.

Journal: Journal of extracellular vesicles

Status: data only, 1 dataset cited

[10249] doi:10.1002/prp2.70186 [paper, data]

Intranasal Insulin Mitigates Memory Impairment and Neuroinflammation in a Mouse Model of Hippocampal Aging.

Journal: Pharmacology research & perspectives

Status: data only, 1 dataset cited

[10250] doi:10.1007/s00285-025-02317-7 [paper, repository]

A 3D-1D-0D multiscale model of the neuro-glial-vascular unit for synaptic and vascular dynamics in the dorsal vagal complex.

Journal: Journal of mathematical biology

Authors' code: alhermann/ngvu-multiscale-3d1d0d (GPL-3.0)

Status: code verified, 397 files readable, 10 matches

[10251] doi:10.1007/s12035-025-05406-2 [paper, data]

The Role of HIF-1α/BNIP3 Pathway in Hippocampal Neuronal Autophagy in Epilepsy.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[10252] doi:10.1016/j.cell.2025.11.039 [paper, repository]

Stimulant medications affect arousal and reward, not attention networks.

Journal: Cell

Authors' code: netneurolab/hansen_receptors (CC-BY-NC-SA-4.0), neurdylab/fMRIAlertnessDetection (no license), ryraut/arousal-waves (no license), DosenbachGreene/abcde (no license), DosenbachGreene/shaman (no license), netneurolab/neuromaps (CC-BY-NC-SA-4.0), DCAN-Labs/abcd-hcp-pipeline (BSD-3-Clause)

Status: code verified, 950 files readable, 6 matches

[10253] doi:10.1016/j.isci.2025.114282 [paper, repository]

Divergence unveils further distinct phenotypic traits of human brain connectomics fingerprint.

Journal: iScience

Authors' code: KaosarUddin/b_f (MIT), hub.docker.com/r/kaosar148 (no license), Zenodo 15891140 (CC-BY-4.0)

Status: code verified, 685 files readable, 2 matches

[10254] doi:10.1016/j.isci.2025.114294 [paper]

Bridged artificial neurons based on memristor circuit for spiking propagation network and coincidence detection.

Journal: iScience

Status: code on request

[10255] doi:10.1016/j.isci.2025.114301 [paper, data]

Context-dependent NMDA receptor dysfunction predicts seizure treatment in mice with human GluN1 variant.

Journal: iScience

Status: code on request, 1 dataset cited

[10256] doi:10.1016/j.jaacop.2025.11.011 [paper, repository]

Developmental Pathways From Childhood Neurodevelopmental Traits to Early Adolescent Psychiatric Dimensions: The Role of Environmental and Lifestyle Factors.

Journal: JAACAP open

Authors' code: OSF yhkvm (no license)

Status: code verified, 2 files readable, 1 match

[10257] doi:10.1016/j.jbc.2025.110995 [paper]

A humanized transferrin receptor 1-transferrin model supports functional iron homeostasis and therapeutic delivery across the blood-brain barrier.

Journal: The Journal of biological chemistry

Status: code on request

[10258] doi:10.1016/j.xcrm.2025.102509 [paper]

Intracranial injection of genetically modified, mosquito non-transmissible Zika virus: Safety in primates and ramifications for brain tumor therapy.

Journal: Cell reports. Medicine

Status: code on request

[10259] doi:10.1038/s41398-025-03766-w [paper]

Relationships between local metabolic activity and distributed functional connectivity in major depressive disorder.

Journal: Translational psychiatry

Status: code on request

[10260] doi:10.1038/s41413-025-00473-6 [paper, data]

SMN deficiency inhibits endochondral ossification via promoting TRAF6-induced ubiquitination degradation of YBX1 in spinal muscular atrophy.

Journal: Bone research

Status: data only, 1 dataset cited

[10261] doi:10.1038/s41467-025-65631-0 [paper, repository]

Light-modulated stem cells in the camera-type eye of an annelid model for adult brain plasticity.

Journal: Nature communications

Authors' code: Zenodo 17349847 (CC-BY-4.0)

Status: code verified, 1 file readable, 5 matches

[10262] doi:10.1038/s41467-025-66477-2 [paper, data]

Interferon dependent immune memory during HSV-1 neuronal latency via increased H3K9me3 and restriction by ATRX.

Journal: Nature communications

Status: data only, 1 dataset cited

[10263] doi:10.1038/s41531-025-01181-y [paper, repository]

The relationship between neuropsychiatric dimensions and markers of Parkinson's disease risk in the UK Biobank.

Journal: NPJ Parkinson's disease

Authors' code: OSF vmabg (no license)

Status: code verified, 98 files readable

[10264] doi:10.1038/s41598-025-28304-y [paper, data]

Molecular modeling to simulation: insights into Gaussian QSAR, molecular docking, and DFT for identification of HDAC3 inhibitors for neurocognitive vascular dementia.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10265] doi:10.1038/s41598-025-28813-w [paper]

A transfer learning-driven fine-tuning of YOLOv10 for improved brain tumor detection in MRI images.

Journal: Scientific reports

Status: code on request

[10266] doi:10.1038/s41598-025-30456-w [paper, data]

Fusion of transfer learning models for detection of alzheimer's disease using bidirectional long short-term memory with equilibrium optimization algorithm.

Journal: Scientific reports

Status: data only, 1 dataset cited

[10267] doi:10.1038/s42003-025-08945-5 [paper, repository]

Eye metrics often reflect visual conscious awareness, conscious content, and neural processing in cerebral blindness.

Journal: Communications biology

Authors' code: nimh-sfim/Eye-Metrics-Cerebral-Blindness (CC0-1.0)

Status: code verified, 83 files readable, 16 matches

[10268] doi:10.1038/s42003-025-09110-8 [paper, repository]

The prefrontal operculum, a human-specific hub for the cognitive control of speech.

Journal: Communications biology

Authors' code: CharlesVerstraete/RSfMRI-connectivity-based-parcelisation (no license)

Status: code verified, 22 files readable, 3 matches

[10269] doi:10.1038/s42003-025-09300-4 [paper, repository]

Dynamic structure-function coupling in macroscale neonatal brain networks.

Journal: Communications biology

Authors' code: zztute/Dynamic-SFC (no license)

Status: code verified, 32 files readable

[10270] doi:10.1038/s44321-025-00348-7 [paper, repository]

Prediction of continuous amyloid positron emission tomography with fluid measures of phosphorylated tau and β-amyloid.

Journal: EMBO molecular medicine

Authors' code: DeMONLab-BioFINDER/continuous-abpet-prediction (no license)

Status: code verified, 4 files readable, 3 matches

[10271] doi:10.1073/pnas.2503931122 [paper, data]

Tppp3 determines basal body positioning and identity of respiratory cilia via microtubule assembly and sphingolipid homeostasis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[10272] doi:10.1073/pnas.2504954122 [paper, data]

S-cone-specific circuitry in the outer plexiform layer of a cone-dominant mammal.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[10273] doi:10.1073/pnas.2513640122 [paper, data]

Genome of venomous caterpillar &lt;i&gt;Doratifera vulnerans&lt;/i&gt; reveals recruitment of immune peptides and their adaptation as pain-inducing toxins.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[10274] doi:10.1093/biostatistics/kxaf022 [paper, repository]

Leveraging population information in brain connectivity via Bayesian ICA with a novel informative prior for correlation matrices.

Journal: Biostatistics (Oxford, England)

Authors' code: mandymejia/FC-TemplateICA-paper (GPL-3.0)

Status: code verified, 15 files readable, 5 matches

[10275] doi:10.1093/bjsopen/zraf158 [paper, repository]

Application of deep learning towards automated electromyographic wave classification for neuromonitoring in thyroid and parathyroid surgery.

Journal: BJS open

Authors' code: ionmreference.net/downloads/mionqa-software (no license)

Status: code verified

[10276] doi:10.1093/brain/awaf331 [paper, repository]

Combined magnetic resonance imaging and serum analysis reveals distinct multiple sclerosis types.

Journal: Brain : a journal of neurology

Authors' code: armaneshaghi/trained_models_MS_SuStaIn (MIT)

Status: empty repository, 2 files readable

[10277] doi:10.1093/gpbjnl/qzaf087 [paper, repository]

A Model for the Development of Alzheimer's Disease.

Journal: Genomics, proteomics & bioinformatics

Authors' code: ngdc.cncb.ac.cn/biocode/tools (no license)

Status: code verified

[10278] doi:10.1093/gpbjnl/qzaf125 [paper, repository]

A Human-specific Protein Regulated by Alternative Polyadenylation Shapes Uniqueness of Human Brain Development.

Journal: Genomics, proteomics & bioinformatics

Authors' code: ngdc.cncb.ac.cn/biocode/tools (no license)

Status: code verified

[10279] doi:10.1093/neuonc/noaf179 [paper, repository]

A cycling, progenitor-like cell population at the base of atypical teratoid rhabdoid tumor subtype differentiation trajectories.

Journal: Neuro-oncology

Authors' code: DrostGroup/ATRT_SC_Het (no license)

Status: code verified, 48 files readable, 14 matches

[10280] doi:10.1093/neuonc/noaf190 [paper, repository]

Spatial profiling of longitudinal glioblastoma reveals consistent changes in cellular architecture, post-treatment.

Journal: Neuro-oncology

Authors' code: GliomaGenomics/GBM_IMC_Analysis (no license)

Status: code verified, 42 files readable, 9 matches

[10281] doi:10.1093/sleep/zsaf205 [paper, repository]

A bistable stochastic model quantifies performance degradation during sleep deprivation.

Journal: Sleep

Authors' code: SR393/PVT-SD-vulnerability (no license)

Status: code verified, 44 files readable, 5 matches

[10282] doi:10.1097/md.0000000000046463 [paper, data]

Research on the potential mechanisms of propofol in treating depression after brain injury based on network pharmacology.

Journal: Medicine

Status: data only, 1 dataset cited

[10283] doi:10.1109/tbme.2025.3572837 [paper, repository]

A Joint Geometric Topological Analysis Network (JGTA-Net) for Detecting and Segmenting Intracranial Aneurysms.

Journal: IEEE transactions on bio-medical engineering

Authors' code: intra3d2019/IntrA (no license)

Status: code verified, 11 files readable

[10284] doi:10.1111/adb.70108 [paper, data]

Epigenetic Landscapes of Methamphetamine Addiction: Unravelling the Diagnostic Potential of Gene Methylation.

Journal: Addiction biology

Status: data only, 1 dataset cited

[10285] doi:10.1111/adb.70112 [paper, repository]

Behavioural and Neural Reliability of a Pavlovian-to-Instrumental Transfer Task.

Journal: Addiction biology

Authors' code: nkroemer/reliability (GPL-3.0)

Status: code verified, 63 files readable

[10286] doi:10.1111/cen.70067 [paper, repository]

Cerebrovascular Function in Women With Polycystic Ovary Syndrome: A Pilot Multi-Parameter Magnetic Resonance Imaging Study.

Journal: Clinical endocrinology

Authors' code: doi:10.12751/g-node.y6xp8z (no license)

Status: code verified

[10287] doi:10.1111/ede.70022 [paper, data]

Growth and Developmental Processes Alternate During Larval Development of Atlantic Herring.

Journal: Evolution & development

Status: data only, 1 dataset cited

[10288] doi:10.1111/ejn.70354 [paper, repository]

Perisaccadic Attentional Updating in Area V4: A Neurocomputational Approach.

Journal: The European journal of neuroscience

Authors' code: hamkerlab/Bergelt2025_AttentionalUpdatingInV4 (MIT)

Status: code verified, 19 files readable, 9 matches

[10289] doi:10.1111/ejn.70355 [paper, repository]

Single-Neuron Critical Intermittency in a Stochastic Hodgkin-Huxley Model.

Journal: The European journal of neuroscience

Authors' code: KonVarv/Single-Neuron-Criticality (no license)

Status: empty repository, 1 file readable

[10290] doi:10.1111/ejn.70356 [paper, repository]

Alpha Modulation of Spiking Activity Across Multiple Brain Regions in Mice Performing a Tactile Selective Detection Task.

Journal: The European journal of neuroscience

Authors' code: Neural-Control-Engineering/n-CORTex (no license), Neural-Control-Engineering/AlphaModulation_SelectiveDetection (no license)

Status: code verified, 892 files readable, 11 matches

[10291] doi:10.1111/ejn.70360 [paper, data]

Propagation of Prediction Signals Revealed by Synchronous Oscillations in the Frontotemporal Network During Tone Omission in Macaque Monkeys.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[10292] doi:10.1111/ejn.70375 [paper, repository]

Increase in Ia Afferent Synaptic Excitation of SOD1 G93A Mouse Motoneurons by 2-Week Anodal Trans-Spinal Direct Current Stimulation Does Not Ameliorate the Cellular Burden of the Disease.

Journal: The European journal of neuroscience

Authors' code: Zenodo 17513623 (CC-BY-4.0)

Status: code verified, 1 file readable

[10293] doi:10.1111/gbb.70035 [paper, repository]

Spatiotemporal Patterns of Gene Expression Associated With Mating Stimuli in the Brain of Female Guppies.

Journal: Genes, brain, and behavior

Authors' code: neurogen-uniandes/networks (MIT)

Status: code verified, 4 files readable

[10294] doi:10.1111/gbb.70042 [paper, data]

Shared Genetic Links Between Birth Weight and Developmental-Behavioral Disorders.

Journal: Genes, brain, and behavior

Status: data only, 1 dataset cited

[10295] doi:10.1111/jnc.70329 [paper, repository]

The Lipidome of the Lateral Ventricle Choroid Plexus Exhibits Sex-Specific Changes Across Aging.

Journal: Journal of neurochemistry

Authors' code: BakerLabNCSU/SCOPE (no license)

Status: code verified, 8 files readable

[10296] doi:10.1111/jnc.70330 [paper, data]

Postnatal Mouse Brain Region-Resolved Peptidomic Resource of Conditional Ndel1 Loss: Comparison of Acidic and Alcoholic Extraction Strategies.

Journal: Journal of neurochemistry

Status: data only, 1 dataset cited

[10297] doi:10.1111/jnc.70332 [paper, data]

Cannabinoid Ligand-Mediated Glycogen Depletion in Astrocytes Is Associated With Increased Intracellular Calcium, Energy Metabolism, and Membrane Dynamics.

Journal: Journal of neurochemistry

Status: data only, 2 datasets cited

[10298] doi:10.1111/psyp.70182 [paper, data]

A Randomized Clinical Trial Reveals Effects of Mindfulness and Slow Breathing on Plasma Amyloid Beta Levels.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[10299] doi:10.1111/psyp.70187 [paper, repository]

ARTEM-IS for ERP: Agreed Reporting Template for EEG Methodology-International Standard for Event-Related Potential Experiments.

Journal: Psychophysiology

Authors' code: artemis.incf.org (no license), OSF kn9f3 (no license), ohbm/hackathon2021 (MIT), OSF anvqy (no license), OSF pdx6y (no license)

Status: code verified, 30 files readable

[10300] doi:10.1111/psyp.70203 [paper, data]

Deviation From Typical Brain Activity During Naturalistic Stimulation Is Related to Personality Traits.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[10301] doi:10.1111/psyp.70205 [paper, data]

How the Dominant Reading Direction Changes Parafoveal Processing: A Combined EEG/Eye-Tracking Study.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[10302] doi:10.1111/psyp.70206 [paper, repository]

Characterizing the Heartbeat-Evoked Potential: A Two-Component Model of Cardiac Signal Processing?

Journal: Psychophysiology

Authors' code: gin.g-node.org/rgautier/hep_characterization (CC-BY-NC-4.0)

Status: code verified, 1 file readable

[10303] doi:10.1111/psyp.70210 [paper, repository]

Decoding Auditory Working Memory Load From EEG Alpha Oscillations.

Journal: Psychophysiology

Authors' code: OSF mw5ve (no license)

Status: code verified

[10304] doi:10.1136/bmjment-2025-302124 [paper, repository]

Do the pharmacokinetics of statins explain psychiatric symptom improvement from adjunctive statin prescribing in severe mental illness? Three target trial emulation studies.

Journal: BMJ mental health

Authors' code: NaomiLaunders/Repurposing-statins-in-SMI (MIT)

Status: code verified, 48 files readable, 5 matches

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