Every paper, by date: page 58

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 58 of 200: 25 September 2025 to 17 September 2025.

Thursday, 25 September 2025 (47 papers, 37 on this page)

[12769] doi:10.1038/s41467-025-63132-8 [paper, data]

Corticonigral projections recruit substantia nigra pars lateralis dopaminergic neurons for auditory threat memories.

Journal: Nature communications

Status: code on request, 1 dataset cited

[12770] doi:10.1038/s41467-025-63259-8 [paper, data]

Neurodevelopmental commonalities in cognitive control networks for mathematics and reading in meta-analysis of 3308 participants.

Journal: Nature communications

Status: data only, 1 dataset cited

[12771] doi:10.1038/s41467-025-63416-z [paper, data]

Concurrent temporal patterning of neural stem cells in the fly visual system.

Journal: Nature communications

Status: data only, 1 dataset cited

[12772] doi:10.1038/s41467-025-63522-y [paper, data]

Fragmentation and multithreading of experience in the default-mode network.

Journal: Nature communications

Status: data only, 2 datasets cited

[12773] doi:10.1038/s41598-025-16856-y [paper, repository]

Adolescent suicide behaviors associate with accelerated reductions in cortical gray matter volume and slower decay of behavioral activation Fun-Seeking scores.

Journal: Scientific reports

Authors' code: OSF nxyb5 (no license)

Status: code verified, 7 files readable, 1 match

[12774] doi:10.1038/s41598-025-17751-2 [paper, data]

Gut dysbiosis and brain microhemorrhages in young vs. aged mice with chronic kidney disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12775] doi:10.1038/s41598-025-18275-5 [paper, data]

Decoding of image properties from single-trial visual evoked potentials recorded by ultra-high-density EEG.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12776] doi:10.1038/s41598-025-18476-y [paper, repository]

Mutual information maximizing quantum generative adversarial networks.

Journal: Scientific reports

Authors' code: red1108/InfoQGAN (no license)

Status: code verified, 18 files readable, 3 matches

[12777] doi:10.1038/s41598-025-18479-9 [paper, repository]

Epileptic seizure detection from electroencephalogram signals based on 1D CNN-LSTM deep learning model using discrete wavelet transform.

Journal: Scientific reports

Authors' code: homakashefi/1d-cnn-lstm-for-seizure-detection-eeg-signals- (no license)

Status: code verified, 9 files readable, 9 matches

[12778] doi:10.1038/s44161-025-00722-1 [paper, repository]

Assessing cerebral microvascular volumetric with high-resolution 4D cerebral blood volume MRI at 7 T.

Journal: Nature cardiovascular research

Authors' code: FanhuaGuo/VASO-microvascular-volumetric-pulsatility (no license)

Status: code verified, 34 files readable, 6 matches

[12779] doi:10.1080/19490976.2025.2554195 [paper, repository]

Metabolic modeling links gut microbiota to metabolic markers of Parkinson's disease.

Journal: Gut microbes

Authors' code: ThieleLab/CodeBase (GPL-3.0)

Status: code verified, 223 files readable, 17 matches

[12780] doi:10.1093/braincomms/fcaf371 [paper, repository]

Myelin-water imaging and multi-shell diffusion-weighted imaging in adults with adrenoleukodystrophy.

Journal: Brain communications

Authors' code: kschan0214/mwi (no license), mriresearch.med.ubc.ca/news-projects/myelin-water-fraction (no license)

Status: code verified, 146 files readable, 1 match

[12781] doi:10.1093/nop/npaf098 [paper]

Longitudinal cortical thickness changes in children with posterior fossa tumors.

Journal: Neuro-oncology practice

Status: code on request

[12782] doi:10.1101/2025.09.24.678288 [paper, repository]

Fast and standardized motor-hotspot determination with automated TMS mapping

Journal: bioRxiv (preprint)

Authors' code: lainem11/E-field_targeting (MIT)

Status: code verified, 25 files readable

[12783] doi:10.1101/2025.09.24.678316 [paper, repository]

A molecular map of the living human brain from quantitative MRI

Journal: bioRxiv (preprint)

Authors' code: Jbrenton191/RNAseq_splicing_pipeline (MIT), mgrantpeters/MRIxST (MIT)

Status: code verified, 60 files readable, 15 matches

[12784] doi:10.1101/2025.09.25.675916 [paper, repository]

Distributed range adaptation in human parietal encoding of numbers

Journal: bioRxiv (preprint)

Authors' code: Gilles86/neural_priors (no license)

Status: code verified, 99 files readable, 22 matches

[12785] doi:10.1101/2025.09.25.678485 [paper, repository]

Combining brain-wide activity imaging with electron microscopy reveals a distributed brain network for processing threatening somatosensory stimuli

Journal: bioRxiv (preprint)

Authors' code: raphaelreme/tps (MIT)

Status: code verified, 10 files readable

[12786] doi:10.1101/2025.09.25.678554 [paper, repository]

Modelling Discrete States and Long-Term Dynamics in Functional Brain Networks

Journal: bioRxiv (preprint)

Authors' code: 0HBA-analysis/Cho2026_DyNeStE (no license)

Status: dead link

[12787] doi:10.1128/mbio.01993-25 [paper, data]

Evidence for a post-invasion role of the <i>Chlamydia trachomatis</i> type III secreted effector TmeA in redirection of host plasma membrane-derived material.

Journal: mBio

Status: data only, 1 dataset cited

[12788] doi:10.1162/imag.a.163 [paper, repository]

<i>DeepPhysioRecon</i>: Tracing peripheral physiology in low frequency fMRI dynamics.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: neurdylab/deep-physio-recon (MIT), huggingface.co/rgbayrak/deep-physio-recon (MIT)

Status: code verified, 40 files readable, 12 matches

[12789] doi:10.1186/s13073-025-01538-1 [paper, data]

EMB is essential for enteric nervous system development mediated by PI3K signaling.

Journal: Genome medicine

Status: data only, 2 datasets cited

[12790] doi:10.1186/s13287-025-04591-0 [paper, data]

Optimizing the in vitro neuronal microenvironment to mitigate phototoxicity in live-cell imaging.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[12791] doi:10.1186/s13287-025-04626-6 [paper, data]

Glycyrrhizic acid combined with human adipose-derived MSCs synergistically alleviates the MPP+/MPTP-induced parkinson's disease by inducing autophagy through PI3K/AKT/HIF-1α pathway.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[12792] doi:10.1186/s13567-025-01620-x [paper, data]

RfeA from Streptococcus suis serotype 2 triggers NLRP3/Caspase-1-dependent pyroptosis leading to blood-brain barrier disruption.

Journal: Veterinary research

Status: data only, 1 dataset cited

[12793] doi:10.1212/wnl.0000000000214146 [paper, repository]

Role of the Proportional Odds Assumption for the Analysis of Ordinal Outcomes in Neurologic Trials.

Journal: Neurology

Authors' code: Yongxi-Long/CORPlot (other)

Status: code verified, 16 files readable

[12794] doi:10.1371/journal.pbio.3003418 [paper, repository]

Microsaccades strongly modulate but do not directly cause the EEG N2pc marker of spatial attention.

Journal: PLoS biology

Authors' code: OSF v3ct7 (no license)

Status: code verified, 22 files readable, 4 matches

[12795] doi:10.1523/eneuro.0336-24.2025 [paper, repository]

Hippocampal-Prefrontal Communication Subspaces Align with Behavioral and Network Patterns in a Spatial Memory Task.

Journal: eNeuro

Authors' code: JadhavLab/CommSub (no license)

Status: code verified, 205 files readable

[12796] doi:10.3389/fcell.2025.1650462 [paper, data]

Genetic modulation of mitochondrial NAD+ regeneration does not prevent dopaminergic neuron dysfunction caused by mitochondrial complex I impairment.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[12797] doi:10.3389/fnhum.2025.1681538 [paper, repository]

When embodiment matters most: a confirmatory study on VR priming in motor imagery brain-computer interfaces training.

Journal: Frontiers in human neuroscience

Authors' code: noisys-project/Virtual-Embodiment-and-Motor-Imagery-BCIs (no license)

Status: empty repository, 1 file readable

[12798] doi:10.3389/fnins.2025.1668993 [paper, repository]

Accelerated brain age in Moyamoya disease patients: a deep learning approach and correlation with disease severity.

Journal: Frontiers in neuroscience

Authors' code: MIDIconsortium/BrainAge (CC-BY-NC-ND-4.0)

Status: code verified, 6 files readable

[12799] doi:10.3389/frobt.2025.1528754 [paper, repository]

A multi-user multi-robot multi-goal multi-device human-robot interaction manipulation benchmark.

Journal: Frontiers in robotics and AI

Authors' code: arayabrain/m4bench (no license)

Status: code verified, 55 files readable, 9 matches

[12800] doi:10.3389/ftox.2025.1645842 [paper, data]

Implementing a trilineage differentiation in the ReproTracker assay for improved teratogenicity assessment.

Journal: Frontiers in toxicology

Status: data only, 1 dataset cited

[12801] doi:10.3390/metabo15100641 [paper, data]

Matched Metabolic Stress Preserves Myokine Responses Regardless of Mechanical Load: A Randomized, Controlled Crossover Trial.

Journal: Metabolites

Status: data only, 1 dataset cited

[12802] doi:10.34133/research.0897 [paper, data]

Interleukin-4-Mediated NLRP3 Inflammasome Activation in Microglia Contributes to Allergic Rhinitis via Central Sensitization.

Journal: Research (Washington, D.C.)

Status: data only, 1 dataset cited

[12803] doi:10.3758/s13423-025-02743-0 [paper, data]

Category learning difficulties in ADHD across modalities and multiple learning systems.

Journal: Psychonomic bulletin & review

Status: data only, 1 dataset cited

[12804] doi:10.7554/elife.100687 [paper, repository]

Steady-state neuron-predominant LINE-1 encoded ORF1p protein and LINE-1 RNA increase with aging in the mouse and human brain.

Journal: eLife

Authors' code: orion-cirb/DAPI_NEUN_ORF1P (GPL-3.0), orion-cirb/QuPath_ORF1P (GPL-3.0)

Status: code verified, 12 files readable, 3 matches

[12805] doi:10.7554/elife.98624 [paper, data]

Segment-specific axon guidance by Wnt/Fz signaling diversifies motor commands in <i>Drosophila</i> larvae.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 24 September 2025 (48 papers)

[12806] doi:10.1002/advs.202503897 [paper, data]

Histone Lactylation-Driven Upregulation of VRK1 Expression Promotes Stemness and Proliferation of Glioma Stem Cells.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[12807] doi:10.1002/ana.78042 [paper, repository]

Resilience to Endoplasmic Reticulum Stress Mitigates Membrane Hyperexcitability Underlying Late Disease Onset in a Murine Model of SCA6.

Journal: Annals of neurology

Authors' code: konopkalab/understanding_resilience_in_sca6 (no license)

Status: empty repository, 1 file readable

[12808] doi:10.1002/mds.70063 [paper, repository]

Preoperative Functional Connectivity Predicts Antiparkinson Drug Change after Deep Brain Stimulation.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: Radiology-Morrison-lab-UCSF/DBS_fMRI_prediction (Apache-2.0)

Status: code verified, 4 files readable, 3 matches

[12809] doi:10.1002/pdi3.70027 [paper, data]

Single-Cell Profiling of Pediatric High-Grade Gliomas Reveals OPC-Like Subpopulations Driving Tumorigenic Lineage Transitions.

Journal: Pediatric discovery

Status: data only, 1 dataset cited

[12810] doi:10.1016/j.celrep.2025.116238 [paper, data]

Radiofrequency regulates the BET-mediated pathways in radial glia differentiation in human cortical development.

Journal: Cell reports

Status: code on request, 1 dataset cited

[12811] doi:10.1016/j.isci.2025.113642 [paper]

Targeting proBDNF in neutrophil subsets: Sepsis biomarker discovery and insights into mitochondrial hyperactivation.

Journal: iScience

Status: code on request

[12812] doi:10.1016/j.jare.2025.08.059 [paper, repository]

Periventricular gradient of normal-appearing white matter in normal aging and multiple neurological diseases.

Journal: Journal of advanced research

Authors' code: zhuozhizheng/Periventricular-gradient-of-NAWM (no license)

Status: code verified, 22 files readable, 6 matches

[12813] doi:10.1016/j.jbc.2025.110766 [paper, data]

Differential modulation of polycystin-2 gain-of-function channels by cysteine-reactive compounds, amphiphilic substances, and S4-S5 linker mutations.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[12814] doi:10.1016/j.molpha.2025.100075 [paper, repository]

Distinctive patterns of G protein coupling induced by the structurally similar 5-HT<sub>2A</sub> receptor ligands ketanserin and altanserin in human prefrontal cortex.

Journal: Molecular pharmacology

Authors' code: getcontacts/getcontacts (Apache-2.0)

Status: code verified, 48 files readable

[12815] doi:10.1016/j.nbd.2025.107125 [paper, data]

Demyelination-induced glutamatergic imbalance mediates hippocampal Hyperexcitability.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[12816] doi:10.1016/j.patter.2025.101367 [paper, repository]

AISleep: Automated and interpretable sleep staging from single-channel EEG data.

Journal: Patterns (New York, N.Y.)

Authors' code: mx597014232/AISleep (MIT), Zenodo 16874797 (MIT)

Status: code verified, 14 files readable, 4 matches

[12817] doi:10.1016/j.xgen.2025.101010 [paper, repository]

Cell-type-specific DNA methylation dynamics in the prenatal and postnatal human cortex.

Journal: Cell genomics

Authors' code: alicemfr/DevCortexDNAm (no license), Zenodo 16876128 (CC-BY-4.0), perishky/dmrff (Artistic-2.0), ejh243/CETYGO (Artistic-2.0)

Status: code verified, 163 files readable, 24 matches

[12818] doi:10.1038/s41467-025-62405-6 [paper, data]

CD103<sup>-</sup>CD8<sup>+</sup> T cells promote neurotoxic inflammation in Alzheimer's disease via granzyme K-PAR-1 signaling.

Journal: Nature communications

Status: data only, 1 dataset cited

[12819] doi:10.1038/s41522-025-00808-5 [paper, repository]

Lacticaseibacillus rhamnosus GR-1 prevents autism-like behaviors by reshaping the maternal and offspring microbiome.

Journal: NPJ biofilms and microbiomes

Authors' code: bbuchfink/diamond (GPL-3.0), biobakery/MetaPhlAn (MIT)

Status: code verified, 521 files readable, 3 matches

[12820] doi:10.1038/s41551-025-01467-9 [paper, repository]

Invasive neurophysiology and whole brain connectomics for neural decoding in patients with brain implants.

Journal: Nature biomedical engineering

Authors' code: neuromodulation/py_neuromodulation (MIT), timonmerk/AcrossCohortMovementDecoding (no license), timonmerk/TRD_pynm (MIT), timonmerk/rns_pynm_optimal_detection_params (no license), neuromodulation/AcrossPatientDecodingModel (MIT), Zenodo 10794369 (CC-BY-4.0), Zenodo 8360751 (MIT), neuromodulation/pyparrm (MIT)

Status: code verified, 277 files readable, 25 matches

[12821] doi:10.1038/s41586-025-09500-2 [paper, repository]

LRP8 is a receptor for tick-borne encephalitis virus.

Journal: Nature

Authors' code: chandranlab/mittler_2024 (GPL-3.0)

Status: code verified, 3 files readable

[12822] doi:10.1038/s41586-025-09544-4 [paper, repository]

Arousal as a universal embedding for spatiotemporal brain dynamics.

Journal: Nature

Authors' code: allensdk.readthedocs.io (no license), ryraut/arousal_dynamics (MIT)

Status: code verified, 17 files readable, 13 matches

[12823] doi:10.1038/s41586-025-09564-0 [paper, data]

Reprogramming neuroblastoma by diet-enhanced polyamine depletion.

Journal: Nature

Status: data only, 1 dataset cited

[12824] doi:10.1038/s41598-025-12695-z [paper, repository]

A repeated awakening study exploring the capacity of complexity measures to capture dreaming during propofol sedation.

Journal: Scientific reports

Authors' code: SugarLab/Anesthesia_PCI_Cont (no license), andresni/pyconscious (MIT)

Status: code verified, 53 files readable, 5 matches

[12825] doi:10.1038/s41598-025-17468-2 [paper, repository]

Depolarization block induction via slow Na<sub>V</sub>1.1 inactivation in Dravet syndrome.

Journal: Scientific reports

Authors' code: gitlab.inria.fr/llemaire/slow-nav-inactivation-in-dravet-syndrome (no license), louisianelemaire/Slow-NaV-inactivation-in-Dravet-syndrome (no license)

Status: code verified, 34 files readable, 2 matches

[12826] doi:10.1038/s41598-025-20479-8 [paper, data]

Metacontrol is reflected in phasic but not tonic cognitive control dynamics.

Journal: Scientific reports

Status: data only, 1 dataset cited

[12827] doi:10.1038/s41598-025-20986-8 [paper, repository]

Fibre supplementation alters the gastrointestinal microbiome, the microbial metabolites and indicators of neurodegeneration in a mouse model of Alzheimer´s disease.

Journal: Scientific reports

Authors' code: Lagkouvardos/Rhea (MIT), bfr_bioinformatics/rbvd-study (no license)

Status: code verified, 20 files readable, 4 matches

[12828] doi:10.1038/s42003-025-08674-9 [paper, repository]

Association of genetic scores related to insulin resistance with neurological outcomes in ancestrally diverse cohorts from the Trans-Omics for Precision Medicine (TOPMed) program.

Journal: Communications biology

Authors' code: chloesar77/FI_PRSCSx_Scores (no license)

Status: code verified, 6 files readable, 4 matches

[12829] doi:10.1038/s42003-025-08728-y [paper, repository]

In silico reconstructions underpin aberrant trafficking dynamics in deficient axons of Dst knockout and Dst/Nefl double-knockout mice.

Journal: Communications biology

Authors' code: zongminliu9/igcps (no license), Zenodo 16579992 (CC-BY-4.0)

Status: code verified, 34 files readable, 2 matches

[12830] doi:10.1073/pnas.2513137122 [paper, data]

Ectopic transcription due to inherited histone methylation may interfere with the ongoing function of differentiated neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[12831] doi:10.1080/13825585.2025.2562203 [paper, repository]

Hippocampal volume moderates the association between cerebrospinal fluid growth-associated protein 43 and episodic memory performance in older adults.

Journal: Neuropsychology, development, and cognition. Section B, Aging, neuropsychology and cognition

Authors' code: osubbal/GAP43-HC-Memory_ALee (no license)

Status: code verified, 2 files readable, 2 matches

[12832] doi:10.1080/19336934.2025.2558387 [paper, repository]

VacQuant: a tool to quantify neurodegeneration and associated vacuolation in brain tissue.

Journal: Fly

Authors' code: colinveal/VacQuant (no license)

Status: empty repository, 1 file readable

[12833] doi:10.1113/ep093171 [paper, repository]

Stroke and motor outcomes are associated with regional and age-specific changes in periodic and aperiodic cortical activity.

Journal: Experimental physiology

Authors' code: margareteisfelder/automated-eeg-cleaning-pipeline (no license), keithlohse/stroke_EEG (no license)

Status: code verified, 9 files readable, 2 matches

[12834] doi:10.1126/sciadv.adv5673 [paper, repository]

Glioblastoma exploits ATP from leading-edge astrocytes to fuel its infiltrative growth revealed by spatially resolved chimeric analysis.

Journal: Science advances

Authors' code: Zenodo 15258837 (CC-BY-4.0), zhou-ran/scar (no license)

Status: code verified, 9 files readable, 1 match

[12835] doi:10.1126/sciadv.adw1270 [paper, data]

Gut epithelium modifies enteric behaviors during nutritional adversity via distinct peptidergic signaling axes.

Journal: Science advances

Status: data only, 1 dataset cited

[12836] doi:10.1126/sciadv.adx2369 [paper, repository]

BDNF-driven synaptic plasticity requires autocrine matrix metalloproteinase-9 activity.

Journal: Science advances

Authors' code: ryoheiyasuda/FLIMage_public (no license)

Status: code verified, 174 files readable, 2 matches

[12837] doi:10.1126/sciadv.adx4647 [paper, data]

Cryo-EM snapshots of NMDA receptor activation illuminate sequential rearrangements.

Journal: Science advances

Status: data only, 5 datasets cited

[12838] doi:10.1126/sciadv.ady1704 [paper, repository]

Salient experiences enhance mundane memories through graded prioritization.

Journal: Science advances

Authors' code: Zenodo 15889161 (CC-BY-4.0)

Status: code verified, 2 files readable, 2 matches

[12839] doi:10.1128/jvi.01114-25 [paper, data]

A novel ZIKV-targeted scRNA-seq method for precise quantification of ZIKV RNA.

Journal: Journal of virology

Status: data only, 1 dataset cited

[12840] doi:10.1162/imag.a.162 [paper, repository]

Regularized partial correlation provides reliable functional connectivity estimates while correcting for widespread confounding.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: colelab.github.io/actflowtoolbox (no license), ColeLab/ReliableFC_release (GPL-3.0)

Status: code verified, 33 files readable, 21 matches

[12841] doi:10.1162/nol.a.17 [paper, repository]

No Support for White Matter Alterations in Adults With Dyslexia: A Fixel-Based Diffusion MRI Study.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF znq69 (no license)

Status: code verified, 5 files readable, 11 matches

[12842] doi:10.1162/nol.a.18 [paper, repository]

Noninvasive Neurostimulation to the Inferior Frontal Sulcus or Cerebellum Improves Accuracy But Not Timing in a Speech Motor Learning Task.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: hrowe802 (no license)

Status: code verified

[12843] doi:10.1177/13872877251380301 [paper, repository]

Easy-to-use and easy-to-interpret quality control of 3D gradient echo T1-weighted MR acquisition sequences for improved test-retest stability of MRI-based hippocampus volumetry.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: ledigchr/MALPEM (BSD-3-Clause), CoBrALab/MAGeTbrain (other)

Status: code verified, 19 files readable

[12844] doi:10.1186/s40478-025-02107-8 [paper, data]

Distinct spatial transcriptomic patterns of substantia Nigra in Parkinson disease and Parkinsonian subtype of multiple system atrophy.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[12845] doi:10.1371/journal.pbio.3003391 [paper, repository]

Extinction and subsequent updating of innate fear responses to a visual looming stimulus rely on hippocampus-dependent mechanisms.

Journal: PLoS biology

Authors' code: Zenodo 17048095 (CC-BY-4.0), conwayp1/looming-stimulus-presentation (no license)

Status: code verified, 10 files readable

[12846] doi:10.1371/journal.pcbi.1013504 [paper, repository]

Elucidating reaction dynamics in a model of human brain energy metabolism.

Journal: PLoS computational biology

Authors' code: JolivetLab (no license), patsatzisdim/humBEMm_CSP (MIT)

Status: code verified, 5 files readable

[12847] doi:10.1523/jneurosci.0091-25.2025 [paper, repository]

Looking into Working Memory to Verify Potential Search Targets.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF 4yacu (no license)

Status: code verified, 16 files readable, 4 matches

[12848] doi:10.3340/jkns.2025.0042 [paper, data]

Higher Arterial Oxygen Levels Associated with Improved Survival in Neurocritically Ill Brain Tumor Patients.

Journal: Journal of Korean Neurosurgical Society

Status: data only, 1 dataset cited

[12849] doi:10.3389/fncel.2025.1572213 [paper, data]

Sex-specific interneuron vulnerability after traumatic brain injury correlates with neurotrophic signaling and chloride homeostasis, independent of behavioral and network outcomes.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[12850] doi:10.3389/fninf.2025.1629388 [paper, repository]

Software and pipelines for registration and analyses of rodent brain image data in reference atlas space.

Journal: Frontiers in neuroinformatics

Authors' code: Neural-Systems-at-UIO/3d-point-clouds (MIT), Neural-Systems-at-UIO/QuickNII-extras (MIT)

Status: code verified, 41 files readable, 4 matches

[12851] doi:10.3390/bioengineering12101014 [paper, data]

Ultra-High Resolution 9.4T Brain MRI Segmentation via a Newly Engineered Multi-Scale Residual Nested U-Net with Gated Attention.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[12852] doi:10.3390/ijms26199335 [paper]

A Novel Serum-Free Triculture Model of Glioblastoma, Astrocytes, and Macrophages.

Journal: International journal of molecular sciences

Status: code on request

[12853] doi:10.7554/elife.104101 [paper, repository]

Online reinforcement learning of state representation in recurrent network supported by the power of random feedback and biological constraints.

Journal: eLife

Authors' code: kenjimoritagithub/oVRNN1 (Apache-2.0)

Status: code verified, 54 files readable, 4 matches

Tuesday, 23 September 2025 (31 papers)

[12854] doi:10.1002/acn3.70207 [paper, data]

Annual 12-Week Dosing Gap of Natalizumab: Clinical Efficacy, Blood Biomarkers, and CSF Cell Composition.

Journal: Annals of clinical and translational neurology

Status: data only, 1 dataset cited

[12855] doi:10.1002/advs.202505484 [paper, repository]

Quantitative Profiling of Nanoscopic Protein Aggregates Reveals Specific Fingerprint of TDP-43-Positive Assemblies in Motor Neuron Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Zenodo 14960396 (CC-BY-4.0), Zenodo 14965409 (MIT), dezeraecox-manuscripts/cox_tdp43-fingerprinting (MIT)

Status: code verified, 49 files readable, 2 matches

[12856] doi:10.1002/mds.70040 [paper, repository]

Does COMT Play a Role in Parkinson's Disease Susceptibility across Diverse Ancestral Populations?

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: GP2code/COMT-PD-GeneAnalysis (MIT), Zenodo 15185052 (CC-BY-4.0)

Status: code verified, 7 files readable, 1 match

[12857] doi:10.1007/s10278-025-01536-0 [paper, repository]

Generating Brain MRI with StyleGAN2-ADA: The Effect of the Training Set Size on the Quality of Synthetic Images.

Journal: Journal of imaging informatics in medicine

Authors' code: aiformedresearch/Synthetic_Images_Metrics_Toolkit (no license), hub.docker.com/r/aiformedresearch (no license)

Status: code verified, 51 files readable, 7 matches

[12858] doi:10.1016/j.gim.2025.101587 [paper, repository]

Comprehensive genotypic, phenotypic, and biochemical characterization of GOT2 deficiency: A progressive neurodevelopmental disorder with epilepsy and abnormal movements.

Journal: Genetics in medicine : official journal of the American College of Medical Genetics

Authors' code: UMCUGenetics/DIMS (MIT)

Status: code verified, 3 files readable

[12859] doi:10.1016/j.ohx.2025.e00708 [paper, data]

Low-cost, open-source device for applying controlled olfactory stimuli during functional magnetic resonance imaging (fMRI) of the brain.

Journal: HardwareX

Status: data only, 2 datasets cited

[12860] doi:10.1038/s41467-025-63877-2 [paper, data]

A galanin-positive population of lumbar spinal cord neurons modulates sexual arousal and copulatory behavior in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[12861] doi:10.1038/s41598-025-20294-1 [paper, repository]

Plasticity of interhemispheric motor cortex connectivity induced by brain state-dependent cortico-cortical paired-associative stimulation.

Journal: Scientific reports

Authors' code: mariaermolova/M1M1PAS (no license)

Status: code verified, 15 files readable, 7 matches

[12862] doi:10.1038/s42255-025-01379-7 [paper, data]

Cholesterol metabolic reprogramming mediates microglia-induced chronic neuroinflammation and hinders neurorestoration following stroke.

Journal: Nature metabolism

Status: data only, 1 dataset cited

[12863] doi:10.1038/s44220-025-00503-6 [paper, data]

The network-based underpinnings of persisting symptoms after concussion: a multimodal neuroimaging meta-analysis.

Journal: Nature. Mental health

Status: data only, 1 dataset cited

[12864] doi:10.1073/pnas.2504697122 [paper, data]

ALKBH5 demethylates the m<sup>6</sup>A modification of SOCS3 in microglia/macrophages and alleviates neuroinflammation after brain injury.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[12865] doi:10.1073/pnas.2506976122 [paper, data]

Biomarkers of immune dysregulation and posttreatment inflammation in spinal muscular atrophy.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[12866] doi:10.1093/braincomms/fcaf366 [paper, repository]

Evidence of clinical and brain recovery in post-COVID-19 condition: a three-year follow-up study.

Journal: Brain communications

Authors' code: ravidadsenaiitm/LNC_FU_Codes (other)

Status: code verified, 23 files readable, 6 matches

[12867] doi:10.1093/braincomms/fcaf367 [paper, repository]

The bi-phasic behaviour of grey matter networks after the first demyelinating attack.

Journal: Brain communications

Authors' code: YongLiuLab/R2SN_construction (MIT)

Status: code verified, 15 files readable

[12868] doi:10.1117/1.jbo.30.9.096003 [paper, repository]

Alignment of histological and polarimetric large-scale imaging for brain tissue characterization.

Journal: Journal of biomedical optics

Authors' code: eleagros/clfm (BSD-3-Clause)

Status: code verified, 45 files readable, 2 matches

[12869] doi:10.1186/s13059-025-03724-1 [paper, repository]

Long-read sequencing reveals the RNA isoform repertoire of neuropsychiatric risk genes in human brain.

Journal: Genome biology

Authors' code: ClarkLaboratory/IsoLamp (MIT), Zenodo 16533873 (MIT), Zenodo 16416952 (MIT), clarklaboratory/neuropsychiatric_risk_gene_isoforms (MIT)

Status: code verified, 30 files readable, 4 matches

[12870] doi:10.1186/s40708-025-00272-z [paper, data]

A hybrid neuromarketing approach exploiting EEG graph signal processing and gaze dynamic patterning.

Journal: Brain informatics

Status: data only, 1 dataset cited

[12871] doi:10.1371/journal.pcbi.1013529 [paper, repository]

Category-specific perceptual learning of robust object recognition modelled using deep neural networks.

Journal: PLoS computational biology

Authors' code: OSF zvd7g (no license)

Status: code verified, 8 files readable, 5 matches

[12872] doi:10.1523/eneuro.0276-25.2025 [paper, repository]

SpinalTRAQ: A Novel Pipeline for Volumetric Cervical Spinal Cord Analysis Identifies the Corticospinal Tract Synaptic Projectome in Healthy and Post-stroke Mice.

Journal: eNeuro

Authors' code: Zenodo 14750099 (CC-BY-4.0), Zenodo 13367689 (CC-BY-4.0), Zenodo 14750098 (CC-BY-4.0)

Status: code verified, 199 files readable, 8 matches

[12873] doi:10.3389/fimmu.2025.1648946 [paper, repository]

Morphometric MRI findings in patients with suspected autoimmune psychosis spectrum syndromes and association with EEG slowing, CSF changes, and psychometric/neuropsychological findings.

Journal: Frontiers in immunology

Authors' code: berndf/avg_q (GPL-3.0)

Status: code verified, 494 files readable, 2 matches

[12874] doi:10.3389/fimmu.2025.1669800 [paper]

Single-cell multi-omics and nursing follow-up prognostic modeling reveal SLFN4-mediated neutrophil dysregulation in traumatic brain injury.

Journal: Frontiers in immunology

Status: data only

[12875] doi:10.3389/fnagi.2025.1622816 [paper, data]

Music elicits different gene expression responses in the buccal cavity of age-related cognitive disorders patients and healthy controls.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[12876] doi:10.3389/fncel.2025.1677457 [paper, data]

Endothelin-1 triggers oxidative stress and cytokine release in human microglia cells through ETRB-dependent mechanisms.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[12877] doi:10.3389/fnins.2025.1633386 [paper, repository]

Differential susceptibility to prenatal stress exposure in serotonin transporter-deficient female mice-an epigenetic exploration.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 3564938 (other-open), bcbio/bcbio-nextgen (MIT)

Status: code verified, 636 files readable, 2 matches

[12878] doi:10.3390/biom15101352 [paper, data]

The ExPAND Study: A Prospective Association Study into Endometriosis-Associated Pain, Neurosteroid Synthesis, and TRPM3.

Journal: Biomolecules

Status: data only, 1 dataset cited

[12879] doi:10.3390/brainsci15101025 [paper, data]

Functional Magnetic Resonance Imaging-Based Analysis of Functional Connectivity in Chronic Stress: A Comparison of Stress-Induced and Recovery States.

Journal: Brain sciences

Status: data only, 1 dataset cited

[12880] doi:10.3390/ijms26199284 [paper, data]

Hypergravity Enhances Stretch Sensitivity in Rat Cardiomyocytes via Increased Expression and Activity of Stretch-Activated Channels.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[12881] doi:10.7554/elife.103660 [paper, repository]

Neural dynamics of reversal learning in the prefrontal cortex and recurrent neural networks.

Journal: eLife

Authors' code: chrismkkim/learntoreverse (MIT)

Status: code verified, 6 files readable, 1 match

[12882] doi:10.7554/elife.103879 [paper, repository]

Rab10 inactivation promotes AMPAR trafficking and spine enlargement during long-term potentiation.

Journal: eLife

Authors' code: ryoheiyasuda/FLIMimage_Matlab_ScanImage (no license)

Status: empty repository, 1 file readable

[12883] doi:10.7554/elife.106628 [paper, repository]

Hierarchical encoding of natural sound mixtures in ferret auditory cortex.

Journal: eLife

Authors' code: agneslandemard/naturalsoundmixtures (MIT)

Status: code verified, 38 files readable

[12884] doi:10.7554/elife.90832 [paper, repository]

Restoration of locomotor function following stimulation of the A13 region in Parkinson's mouse models.

Journal: eLife

Authors' code: OSF j4axw (no license)

Status: code verified, 2 files readable

Monday, 22 September 2025 (26 papers)

[12885] doi:10.1007/s12264-025-01506-0 [paper]

Effects of Stress Coping Styles and Social Defeat on Zebrafish Behaviour and Brain Transcriptomics.

Journal: Neuroscience bulletin

Status: code on request

[12886] doi:10.1016/j.bbih.2025.101111 [paper, repository]

Alterations in functional connectivity analyzed using MREG in patients with suspected autoimmune psychosis spectrum syndromes.

Journal: Brain, behavior, & immunity - health

Authors' code: berndf/avg_q (GPL-3.0)

Status: code verified, 494 files readable, 1 match

[12887] doi:10.1016/j.celrep.2025.116305 [paper, data]

Old World alphaviruses use distinct mechanisms to infect brain microvascular endothelial cells for neuroinvasion.

Journal: Cell reports

Status: code on request, 1 dataset cited

[12888] doi:10.1016/j.isci.2025.113605 [paper, repository]

PROTECT: Protein circadian time prediction using unsupervised learning.

Journal: iScience

Authors' code: aramansary/protect (no license), bharathananth/compareRhythms (GPL-3.0), RWParsons/circacompare (other), zqfang/GSEApy (BSD-3-Clause)

Status: code verified, 80 files readable, 5 matches

[12889] doi:10.1016/j.isci.2025.113622 [paper, repository]

Attentional state, not trait, predicts test performance in video-based learning.

Journal: iScience

Authors' code: OSF u72k3 (no license)

Status: code verified, 10 files readable, 2 matches

[12890] doi:10.1038/s41380-025-03238-z [paper, repository]

Mapping symptom-general and symptom-specific targets for transcranial magnetic stimulation in schizophrenia: an electric-field modeling meta-analysis.

Journal: Molecular psychiatry

Authors' code: simnibs.github.io/simnibs (no license), lorinas/metaModeling (no license)

Status: code verified, 1 file readable

[12891] doi:10.1038/s41467-025-64088-5 [paper, data]

NR3C1-mediated epigenetic regulation suppresses astrocytic immune responses in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[12892] doi:10.1038/s41564-025-02120-6 [paper, data]

Nasal Staphylococcus aureus carriage promotes depressive behaviour in mice via sex hormone degradation.

Journal: Nature microbiology

Status: data only, 1 dataset cited

[12893] doi:10.1038/s42255-025-01365-z [paper, repository]

The Neurolipid Atlas: a lipidomics resource for neurodegenerative diseases.

Journal: Nature metabolism

Authors' code: syjgino/SLA (Apache-2.0), CPM-Metabolomics-Lipidomics/soda-light (GPL-3.0)

Status: code verified, 21 files readable, 3 matches

[12894] doi:10.1038/s44320-025-00151-z [paper, data]

Hominoid-specific transposable elements reshaped neural crest migration in craniofacial development.

Journal: Molecular systems biology

Status: data only, 1 dataset cited

[12895] doi:10.1073/pnas.2506513122 [paper, repository]

Disentangling metabolic and neurovascular timescales supporting cognitive processes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: MIPLabCH/TbCAPs (no license), Zenodo 15855362 (GPL-3.0), cimec-mri-lab/brain-metabolism-and-connectivity-dynamics (GPL-3.0)

Status: code verified, 230 files readable, 9 matches

[12896] doi:10.1073/pnas.2515027122 [paper, repository]

Motor expertise modulates cortical activation during imagery of simple and complex actions.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF t3n8c (no license)

Status: empty repository

[12897] doi:10.1111/febs.70266 [paper, data]

D1/D5 receptor activation promotes long-term potentiation and synaptic tagging/capture in hippocampal area CA2.

Journal: The FEBS journal

Status: data only, 1 dataset cited

[12898] doi:10.1162/imag.a.143 [paper, repository]

Frequency-dependence in multidimensional diffusion-relaxation correlation MRI of the brain: Overfitting or meaningful parameter?

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: daniel-topgaard/md-dmri (other)

Status: code verified, 719 files readable, 2 matches

[12899] doi:10.1162/imag.a.155 [paper, repository]

Functional MRI reveals subcortical auditory push-pull interactions requiring intercollicular integrity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: figshare 29974120 (CC-BY-4.0)

Status: code verified

[12900] doi:10.1162/imag.a.156 [paper, repository]

Mapping individual differences in intermodal coupling in neurodevelopment.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ruyipan/CEIDR (other)

Status: code verified, 11 files readable, 2 matches

[12901] doi:10.1162/imag.a.157 [paper, repository]

Activation mapping in multi-center retrospective rat sensory-evoked functional MRI datasets using a unified pipeline.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: grandjeanlab/multirat_se (Apache-2.0), Zenodo 3877179 (other-open), brkraw/bruker (GPL-3.0)

Status: code verified, 144 files readable, 8 matches

[12902] doi:10.1162/imag.a.161 [paper]

Acetaminophen affects the duration but not the occurrence of BOLD signal decline in the dorsal hippocampus after induction of neuronal afterdischarges.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[12903] doi:10.1162/netn_a_00459 [paper, repository]

Reproducibility of resting-state functional connectivity in healthy aging and brain injury: A mini-multiverse analysis.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: holsmon/masters (no license)

Status: code verified, 18 files readable, 2 matches

[12904] doi:10.1371/journal.pgen.1011873 [paper, data]

Ripply3 overdosage induces mid-face shortening through Tbx1 downregulation in Down syndrome models.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[12905] doi:10.1371/journal.pone.0331870 [paper, repository]

CQ-CNN: A lightweight hybrid classical-quantum convolutional neural network for Alzheimer's disease detection using 3D structural brain MRI.

Journal: PloS one

Authors' code: mominul-ssv/alz-cq-cnn (no license)

Status: code verified, 57 files readable, 1 match

[12906] doi:10.3389/fnhum.2025.1595331 [paper, data]

Monotonicity in graph theoretic summaries of fMRI data acquired during human learning.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[12907] doi:10.3389/fnins.2025.1635588 [paper, data]

TFANet: a temporal fusion attention neural network for motor imagery decoding.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[12908] doi:10.3389/fnins.2025.1650437 [paper, repository]

<i>In vitro</i> clustered cortical networks reveal NMDA-dependent modulation of repetitive activation sequences.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 15677872 (MIT), screenneuropharm/mk-801 (MIT)

Status: code verified, 32 files readable, 1 match

[12909] doi:10.3390/neurolint17090151 [paper, data]

SeruNet-MS: A Two-Stage Interpretable Framework for Multiple Sclerosis Risk Prediction with SHAP-Based Explainability.

Journal: Neurology international

Status: data only, 1 dataset cited

[12910] doi:10.7150/thno.110292 [paper]

Deep brain stimulation-induced normalization of hippocampal synchrony in a transgenic rat model of Alzheimer's disease.

Journal: Theranostics

Status: code on request

Sunday, 21 September 2025 (2 papers)

[12911] doi:10.1002/jad.70054 [paper, repository]

Genetic and Environmental Associations Among Pain, Sleep Disturbances, and Substance Use Intent in Early Adolescence.

Journal: Journal of adolescence

Authors' code: nda.nih.gov (no license)

Status: code verified

[12912] doi:10.1038/s44318-025-00521-1 [paper, data]

Telomeric DNA damage response mediates neurotoxicity of Aβ42 oligomers in Alzheimer's disease.

Journal: The EMBO journal

Status: data only, 1 dataset cited

Saturday, 20 September 2025 (6 papers)

[12913] doi:10.1016/j.cccb.2025.100397 [paper, repository]

On the origin of cerebral small vessel disease: MRI markers of cSVD in young adults with hypertension.

Journal: Cerebral circulation - cognition and behavior

Authors' code: miac-research/MARS-WMH (other)

Status: code verified, 9 files readable, 2 matches

[12914] doi:10.1016/j.isci.2025.113615 [paper]

Analysis of neuronal activity impairment in iPSC-derived neurons from idiopathic autism patients.

Journal: iScience

Status: code on request

[12915] doi:10.1038/s41380-025-03224-5 [paper, repository]

Generalizable stratification based on thalamo-somatomotor functional connectivity predicts responses to antidepressants in patients with depression.

Journal: Molecular psychiatry

Authors' code: tomokitokuda/Multiple-Co-clustering (no license)

Status: code verified, 8 files readable

[12916] doi:10.1038/s41380-025-03266-9 [paper, data]

CB<sub>1</sub> receptors on a subset of vagal afferent neurons modulate voluntary ethanol intake in mice.

Journal: Molecular psychiatry

Status: data only, 5 datasets cited

[12917] doi:10.21769/bioprotoc.5446 [paper, repository]

A Protocol to Assess Time-of-Day-Dependent Learning and Memory in Mice Using the Novel Object Recognition Test.

Journal: Bio-protocol

Authors' code: farhylab/Mar-et-al-2025-NOR (GPL-3.0)

Status: code verified, 7 files readable

[12918] doi:10.3390/s25185897 [paper, data]

Sex Differences in Cortical Hemodynamic Responses During Interactive and Passive Tasks: An fNIRS Study Using the Nefroball System.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 19 September 2025 (33 papers)

[12919] doi:10.1016/j.cccb.2025.100396 [paper, repository]

Cerebral small vessel disease lesion segmentation methods: A systematic review.

Journal: Cerebral circulation - cognition and behavior

Authors' code: nitrc.org/projects/w2mhs (no license), Damangir/Cascade (other), febrianrachmadi/lots-iam-gpu (BSD-3-Clause), hub.docker.com/r/skipconnection (no license), ReubenDo/jSTABL (Apache-2.0), spacl-ua/wmh-segmentation (GPL-3.0), hub.docker.com/r/wmhchallenge (no license), Ericzhang1/BAGAU-Net (no license), v-sundaresan/truenet (Apache-2.0), hub.docker.com/repository/docker (no license), kokhaur/WML-Segmentation-False-Positive-Detection (no license), bthyreau/deep-T1-WMH (MIT), simonsf/wmh-segmentation (no license), gongt99/Cascade-U-Net-white-matter-hyperintensities- (no license), pboutinaud/SHIVA_WMH (other), BrainImageAnalysis/instance-loss (Apache-2.0), Yonsei-MILab/Cerebral-Microbleeds-Detection (no license), NAL-UTHSCSA/CMB_NHID_Segmentation (no license), v-sundaresan/microbleed-detection (no license), Yonsei-MILab/TPE-Det (no license), huangnick/mcpvs-net (GPL-3.0), Yonsei-MILab/Lacunes-Identification (no license), hub.docker.com/r/whereisvaldo (no license)

Status: code verified, 297 files readable, 2 matches

[12920] doi:10.1016/j.dcn.2025.101614 [paper, repository]

Analysis of event-related potential difference waves can benefit from linear mixed effects modeling: Recommendations for analyses and general model fitting.

Journal: Developmental cognitive neuroscience

Authors' code: basclab/LME_MixedEffectsERPDifferenceWave (no license), basclab/LME_MixedEffectsERPTutorial (no license), 4ccoxau.github.io/poweranalysisworkshopmanybabies (no license)

Status: code verified, 28 files readable, 34 matches

[12921] doi:10.1016/j.eplepsyres.2025.107667 [paper, data]

Standardization of preclinical methodologies for discovery and validation of circulating microRNA biomarkers for post-traumatic epileptogenesis - Lessons learned from the EpiBioS4Rx Project 1.

Journal: Epilepsy research

Status: data only, 1 dataset cited

[12922] doi:10.1016/j.isci.2025.113602 [paper, repository]

Rotating visual spaces induce behavioral biases consistent with recalibrated heading integration in humans.

Journal: iScience

Authors' code: Zenodo 16777254 (CC-BY-4.0), akeinath/HumanVR_HD_2025 (no license)

Status: code verified, 2 files readable, 1 match

[12923] doi:10.1016/j.neuroimage.2025.121476 [paper]

Measuring the potential risk of re-identification of imaging research participants from open-source automated face recognition software.

Journal: NeuroImage

Status: code on request

[12924] doi:10.1016/j.nicl.2025.103881 [paper, repository]

Brain age gap reduction following exercise mirrors clinical improvements in schizophrenia spectrum disorders.

Journal: NeuroImage. Clinical

Authors' code: OSF tr3nx (no license), james-cole/brainageR (LGPL-3.0), Zenodo 3463212 (other-open), OSF spwc2 (no license)

Status: code verified, 15 files readable, 8 matches

[12925] doi:10.1016/j.nicl.2025.103883 [paper, repository]

Brain white matter microstructure associations with blood markers of the GSH redox cycle in schizophrenia.

Journal: NeuroImage. Clinical

Authors' code: Mic-map/WMTI-Watson_Python (no license)

Status: code verified, 4 files readable, 1 match

[12926] doi:10.1016/j.omtm.2025.101597 [paper]

A novel gene delivery platform based on a commensal human anellovirus demonstrates transduction in multiple tissue types.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[12927] doi:10.1038/s41467-025-64152-0 [paper, repository]

Thalamus enables active dendritic coupling of inputs arriving at different cortical layers.

Journal: Nature communications

Authors' code: mpinb/in_silico_framework_hot_zone (GPL-3.0)

Status: code verified, 179 files readable, 8 matches

[12928] doi:10.1038/s44319-025-00565-8 [paper]

The invasion pore induced by Toxoplasma gondii.

Journal: EMBO reports

Status: data only

[12929] doi:10.1101/2025.09.19.677368 [paper]

Verbal Episodic Processing in Newborns

Journal: bioRxiv (preprint)

Status: code on request

[12930] doi:10.1126/sciadv.adw5500 [paper, repository]

Multistable bimodal perceptual coding within the ventral premotor cortex.

Journal: Science advances

Authors' code: BernardoAO/BDT-VPC (no license), Rossi-Pool-Lab/Bimodal-Detection-analysis (no license)

Status: code verified, 8 files readable, 2 matches

[12931] doi:10.1126/sciadv.adx9737 [paper, data]

Cell type-specific plasticity in synaptic, intrinsic, and sound response properties of deep-layer cortical neurons after noise trauma.

Journal: Science advances

Status: data only, 1 dataset cited

[12932] doi:10.1126/sciadv.adz5524 [paper, repository]

Personalized mapping of inhibitory spinal cord circuits in humans via noninvasive neural decoding and in silico modeling.

Journal: Science advances

Authors' code: Zenodo 16740502 (CC-BY-4.0)

Status: code verified

[12933] doi:10.1159/000548522 [paper, data]

Increasing Temporal Trends in the Frequency of Methamphetamine-Associated Intracerebral Hemorrhage in the Philippines.

Journal: Cerebrovascular diseases extra

Status: data only, 1 dataset cited

[12934] doi:10.1162/imag.a.150 [paper, repository]

Task-related changes in aperiodic activity are related to visual working memory capacity independent of event-related potentials and alpha oscillations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: nigelrogasch/aperiodic-activity-working-memory (no license)

Status: code verified, 38 files readable, 6 matches

[12935] doi:10.1162/imag.a.153 [paper]

Mapping brain function underlying naturalistic motor observation and imitation using high-density diffuse optical tomography.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[12936] doi:10.1162/netn.a.22 [paper, repository]

Partial correlation as a tool for mapping functional-structural correspondence in human brain connectivity.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 8158914 (CC-BY-4.0)

Status: code verified

[12937] doi:10.1162/netn.a.23 [paper, repository]

Stable brain PET metabolic networks using a multiple sampling scheme.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: guischu09/MultipleSampling-MBN (no license)

Status: code verified, 207 files readable, 3 matches

[12938] doi:10.1162/netn.a.24 [paper, repository]

Task-guided generative adversarial networks for synthesizing and augmenting structural connectivity matrices for connectivity-based prediction.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: MIS-Lab-Doshisha/tg-gan2 (no license)

Status: code verified, 84 files readable, 17 matches

[12939] doi:10.1162/netn.a.25 [paper, repository]

Characterizing dynamic functional connectivity subnetwork contributions in narrative classification with Shapley values.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: aurorarossi/fMRINarrativeClassification (no license)

Status: code verified, 61 files readable

[12940] doi:10.1162/netn_a_00452 [paper, repository]

Dynamic fluctuations of intrinsic brain activity are associated with consistent topological patterns in puberty and are biomarkers of neural maturation.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: cstamoulis1/Topological_Signal_Dynamics_in_Puberty (no license), cstamoulis1/Next-Generation-Neur-al-Data-Analysis-NGNDA (no license)

Status: code verified, 35 files readable, 9 matches

[12941] doi:10.1371/journal.pcbi.1013497 [paper, repository]

Brainwide hemodynamics predict EEG neural rhythms across sleep and wakefulness in humans.

Journal: PLoS computational biology

Authors' code: Zenodo 16322911 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[12942] doi:10.1371/journal.pcbi.1013503 [paper, repository]

Modeling neuron-astrocyte interactions in neural networks using distributed simulation.

Journal: PLoS computational biology

Authors' code: Zenodo 13757202 (GPL-3.0), nest-simulator.readthedocs.io (no license), INM-6/beNNch (GPL-3.0), heplesser/astrocyte-surrogate-module (no license), Zenodo 17334796 (GPL-3.0)

Status: code verified, 16 files readable, 2 matches

[12943] doi:10.3389/fgene.2025.1668200 [paper, data]

A hypergraph neural network for prioritizing Alzheimer's disease risk genes.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[12944] doi:10.3389/fphar.2025.1650534 [paper, data]

Kaixin San Jiawei granule improves cognitive function and alleviates neuronal damage in Alzheimer's disease via multi-component and multi-target mechanisms.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[12945] doi:10.3389/fpsyt.2025.1662842 [paper, data]

Volumetric and cortical thickness alterations in alcohol dependence: evidence of accelerated brain aging and clinical correlations.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[12946] doi:10.3390/ijms26189140 [paper, repository]

Altered Neuroinflammatory Transcriptomic Profile in the Hippocampal Dentate Gyrus Three Weeks After Lateral Fluid Percussion Injury in Rats.

Journal: International journal of molecular sciences

Authors' code: NgwenyaLab/DeSana_and_Alfawares_2025 (no license)

Status: code verified, 4 files readable, 7 matches

[12947] doi:10.5498/wjp.v15.i9.108359 [paper, data]

Self-AttentionNeXt: Exploring schizophrenic optical coherence tomography image detection investigations.

Journal: World journal of psychiatry

Status: data only, 1 dataset cited

[12948] doi:10.7554/elife.104057 [paper, repository]

Maintenance of neuronal TDP-43 expression requires axonal lysosome transport.

Journal: eLife

Authors' code: jhawrot/tdp_borc (no license), NIH-CARD/V_Ryan_TDP43_meta_2024 (MIT), frattalab/splicing (no license), HaoGroup-ProtContLib/Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics (no license)

Status: code verified, 69 files readable, 5 matches

[12949] doi:10.7554/elife.106481 [paper, repository]

Human single-neuron activity is modulated by intracranial theta burst stimulation of the basolateral amygdala.

Journal: eLife

Authors' code: Justin-Campbell/BLAESUnits (no license)

Status: code verified, 15 files readable, 12 matches

[12950] doi:10.7554/elife.106508 [paper, repository]

Blue-shifted ancyromonad channelrhodopsins for multiplex optogenetics.

Journal: eLife

Authors' code: doi:10.5281/zenodo/6461999 (no license)

Status: dead link

[12951] doi:10.7759/cureus.92738 [paper, data]

Neural Correlates of Social Exclusion and Childhood Trauma in Borderline Personality Disorder.

Journal: Cureus

Status: data only, 1 dataset cited

Thursday, 18 September 2025 (25 papers)

[12952] doi:10.1002/advs.202410603 [paper]

Excessive DNA Double-Strand Breaks-Associated 3D Genome Reorganization Contributes to Neural Tube Defects with Folate Deficiency.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[12953] doi:10.1002/advs.202508777 [paper, repository]

Neural Response Reliability as a Marker of the Transition of Neural Codes along Auditory Pathways.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Zenodo 16323433 (CC-BY-4.0), gitlab.pasteur.fr/ida-public/ncr-algorithm (no license)

Status: code verified, 16 files readable, 5 matches

[12954] doi:10.1007/s10143-025-03766-w [paper, repository]

Predicting Surgical Site Infection after Lumbar Laminectomy and Discectomy: A Cutting-edge Algorithmic Approach by Incorporating Ensembled Stacking into the Current State-of-the-art for Automated Machine Learning.

Journal: Neurosurgical review

Authors' code: mljar/mljar-supervised (MIT), hhaider15/SSI-stacked-ensemble-predictive-algorithmic-model (GPL-3.0)

Status: code verified, 204 files readable, 4 matches

[12955] doi:10.1016/j.brs.2025.09.008 [paper, repository]

Hierarchical Bayesian estimation of motor-evoked potential recruitment curves yields accurate and robust estimates.

Journal: Brain stimulation

Authors' code: hbmep/hbmep (MIT), hbmep/hbmep-paper (MIT)

Status: code verified, 97 files readable, 11 matches

[12956] doi:10.1016/j.celrep.2025.116294 [paper]

Circuit-selective pharmacological targeting of prefrontal cortex-projecting locus coeruleus neurons drives antinociception.

Journal: Cell reports

Status: code on request

[12957] doi:10.1016/j.crmeth.2025.101179 [paper, repository]

A deep learning pipeline for accurate and automated restoration, segmentation, and quantification of dendritic spines.

Journal: Cell reports methods

Authors' code: Zenodo 15612240 (GPL-3.0), lahammond/RESPAN (GPL-3.0), Zenodo 19671935 (CC-BY-NC-4.0), Zenodo 19671936 (CC-BY-NC-4.0), Zenodo 19672042 (CC-BY-NC-4.0), Zenodo 19672043 (CC-BY-NC-4.0), Zenodo 19671964 (CC-BY-NC-4.0), Zenodo 19671965 (CC-BY-NC-4.0), Zenodo 19671948 (CC-BY-NC-4.0), Zenodo 19671949 (CC-BY-NC-4.0)

Status: code verified, 52 files readable, 4 matches

[12958] doi:10.1016/j.crmeth.2025.101180 [paper, repository]

A real-time all-optical interface for dynamic perturbation of neural activity during behavior.

Journal: Cell reports methods

Authors' code: Zenodo 16424873 (CC-BY-4.0), alloptical/pyRTAOI (GPL-2.0)

Status: code verified, 322 files readable, 12 matches

[12959] doi:10.1016/j.eclinm.2025.103452 [paper, repository]

Identification of critical brain regions for autism diagnosis from fMRI data using explainable AI: an observational analysis of the ABIDE dataset.

Journal: EClinicalMedicine

Authors' code: v1dya/XAI-for-ASD (no license)

Status: dead link

[12960] doi:10.1016/j.jbc.2025.110741 [paper, data]

Intrinsically disordered cytoplasmic tail in netrin receptor DCC binds the large ribosomal subunit to inhibit translation.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[12961] doi:10.1016/j.stemcr.2025.102639 [paper, data]

Satellite glial contact enhances differentiation and maturation of human iPSC-derived sensory neurons.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[12962] doi:10.1016/j.stemcr.2025.102643 [paper, repository]

Drivers and implications of lineage-specific cancer-related mutations in human pluripotent and adult stem cells.

Journal: Stem cell reports

Authors' code: JungJonathan/ASC2CM (no license)

Status: code verified, 19 files readable, 5 matches

[12963] doi:10.1016/j.xgen.2025.101003 [paper, repository]

Network-based drug repurposing for psychiatric disorders using single-cell genomics.

Journal: Cell genomics

Authors' code: daifengwanglab/PEC2NetMed (no license), Zenodo 16756007 (CC-BY-4.0)

Status: code verified, 48 files readable, 19 matches

[12964] doi:10.1021/jacs.5c12812 [paper, repository]

Design of Tau Aggregation Inhibitors Using Iterative Machine Learning and a Polymorph-Specific Brain-Seeded Fibril Amplification Assay.

Journal: Journal of the American Chemical Society

Authors' code: rohorne07/Iterate (MIT)

Status: code verified, 21 files readable, 1 match

[12965] doi:10.1038/s41593-025-02060-8 [paper, repository]

Temporal integration in human auditory cortex is predominantly yoked to absolute time.

Journal: Nature neuroscience

Authors' code: snormanhaignere/time-vs-structure (no license)

Status: code verified, 689 files readable, 16 matches

[12966] doi:10.1038/s42256-025-01104-9 [paper, repository]

Modelling neural coding in the auditory midbrain with high resolution and accuracy.

Journal: Nature machine intelligence

Authors' code: fotisdr/ICNet (other), Zenodo 11943090 (CC-BY-4.0)

Status: code verified, 7 files readable, 6 matches

[12967] doi:10.1093/braincomms/fcaf364 [paper, repository]

Cycles in seizure duration and their underlying dynamics in the tetanus toxin rat model.

Journal: Brain communications

Authors' code: ParvinZE/Cycles-in-Seizure-Duration (no license)

Status: code verified, 6 files readable, 10 matches

[12968] doi:10.1136/bmjopen-2025-109467 [paper, repository]

Remote intentional music listening intervention to support mental health in individuals with chronic stroke: study protocol for a feasibility trial.

Journal: BMJ open

Authors' code: intentional-music-listening/SpotifyTrackerOpen (MIT)

Status: code verified, 3 files readable, 1 match

[12969] doi:10.1161/strokeaha.125.052265 [paper, data]

Experimental Ischemic Stroke-Induced Alpha-Synuclein Pathology Enhances Endothelial Inflammatory Response and Impairs Angiogenesis.

Journal: Stroke

Status: data only, 1 dataset cited

[12970] doi:10.1242/dev.204697 [paper, data]

Chd4 remodels chromatin to control retinal cell type specification and lineage termination.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[12971] doi:10.1371/journal.pbio.3003378 [paper, repository]

Humans have a longer period of cortical maturation across depth and hierarchy than macaques.

Journal: PLoS biology

Authors' code: monami-nishio/prolonged_cortical_maturation (no license), Zenodo 16786211 (CC-BY-4.0)

Status: code verified, 34 files readable, 2 matches

[12972] doi:10.1523/eneuro.0123-25.2025 [paper, repository]

The Oviposition Inhibitory Neuron is a Potential Hub of Multi-Circuit Integration in the <i>Drosophila</i> Brain.

Journal: eNeuro

Authors' code: prameshsingh/generalized-modularity-density (no license), Gutierrez-lab/oviIN-inputs (no license)

Status: code verified, 27 files readable, 9 matches

[12973] doi:10.3389/fbinf.2025.1625664 [paper]

Key genes associated with brain metastasis in non-small cell lung cancer: novel insights from bioinformatics analysis.

Journal: Frontiers in bioinformatics

Status: data only

[12974] doi:10.3758/s13415-025-01345-6 [paper, repository]

Signal suppression makes search less effortful.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF 3zegr (no license)

Status: code verified, 10 files readable, 1 match

[12975] doi:10.7554/elife.104037 [paper, repository]

Recovery of the full in vivo firing range in post-lesion surviving DA SN neurons associated with Kv4.3-mediated pacemaker plasticity.

Journal: eLife

Authors' code: Roeper-Lab/Kovacheva_et_al_2025 (MIT)

Status: code verified, 13 files readable, 3 matches

[12976] doi: [paper, repository]

Social threat, neural connectivity, and adolescent mental health: a population-based longitudinal study

Journal: Psychological medicine

Authors' code: OSF 7xewv (no license)

Status: empty repository

Wednesday, 17 September 2025 (48 papers, 16 on this page)

[12977] doi:10.1002/advs.202514926 [paper]

Enhanced Protein Synthesis and Hippocampus-Dependent Memory via Inhibition of YTHDF2-Mediated m<sup>6</sup>A mRNA Degradation.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: code on request

[12978] doi:10.1002/imt2.70076 [paper, repository]

Multi-omics identifies microbiota-derived deoxycholic acid as a key mediator of blood-brain barrier dysfunction in Parkinson's disease.

Journal: iMeta

Authors' code: ZhezhaoPKU/Trans_PD (no license)

Status: dead link

[12979] doi:10.1002/mrm.70086 [paper, repository]

Bidirectional crusher gradient method to estimate the labeling efficiency of pseudo-continuous arterial spin labeling MRI in mice.

Journal: Magnetic resonance in medicine

Authors' code: zyliamwei/pCASL_Simulation (GPL-3.0)

Status: code verified, 9 files readable, 4 matches

[12980] doi:10.1002/mrm.70087 [paper, repository]

ISME-incoherent sampling of multi-echo data to minimize cardiac-induced noise in brain maps of $$ {R}_2^{\ast } $$ and magnetic susceptibility.

Journal: Magnetic resonance in medicine

Authors' code: Zenodo 14808609 (CC-BY-4.0), fil-physics/MPM_QSM (GPL-3.0)

Status: code verified, 344 files readable, 3 matches

[12981] doi:10.1007/s00204-025-04183-0 [paper, data]

Oxidative stress-driven disease-associated microglia (DAM)-like polarization in human microglia (HMC3) cells exposed to small-size silver nanoparticles in a transwell co-culture system with neurons (cholinergic differentiated SH-SY5Y) cells in vitro.

Journal: Archives of toxicology

Status: data only, 5 datasets cited

[12982] doi:10.1016/j.apsb.2025.09.024 [paper, data]

Sorafenib promotes the E3 ubiquitin ligase FBXW7 to increase tau degradation and ameliorate tauopathies.

Journal: Acta pharmaceutica Sinica. B

Status: data only, 1 dataset cited

[12983] doi:10.1016/j.celrep.2025.116284 [paper, repository]

Neural dynamics in superior colliculus of freely moving mice.

Journal: Cell reports

Authors' code: Zenodo 15446809 (CC-BY-4.0), niellab/FreelyMovingEphys (no license), nielllab/FreelyMovingEphys (no license)

Status: code verified, 93 files readable, 10 matches

[12984] doi:10.1016/j.crmeth.2025.101177 [paper, repository]

High-throughput bioprinting to produce micropatterned neuroepithelial tissues and model TSC2-deficient brain malformations.

Journal: Cell reports methods

Authors' code: OSF 538qa (no license)

Status: empty repository

[12985] doi:10.1016/j.ebiom.2025.105939 [paper, data]

Identification of potential therapeutic targets for problematic alcohol use using multi-omics data.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[12986] doi:10.1016/j.isci.2025.113583 [paper, data]

Longitudinal study of functional brain networks for processing infant-directed and adult-directed speech during the first year.

Journal: iScience

Status: data only, 1 dataset cited

[12987] doi:10.1016/j.neuroimage.2025.121472 [paper, data]

Motor-cognitive aging: The role of motor cortex and its pathways.

Journal: NeuroImage

Status: code on request, 1 dataset cited

[12988] doi:10.1016/j.xgen.2025.100986 [paper, repository]

Cell-type-specific dysregulation of gene expression due to Chd8 haploinsufficiency during mouse cortical development.

Journal: Cell genomics

Authors' code: NoonanLab/Yim_et_al_Chd8 (no license), Zenodo 13324274 (CC-BY-4.0), scicrunch.org/resolver/scr_002105 (no license)

Status: code verified, 82 files readable, 35 matches

[12989] doi:10.1016/j.xgen.2025.101007 [paper, repository]

Single-nucleus transcriptome atlas of orbitofrontal cortex in ALS with a deep learning-based decoding of alternative polyadenylation mechanisms.

Journal: Cell genomics

Authors' code: Zenodo 16879041 (MIT), BaderLab/APA-Net (MIT), plger/scDblFinder (GPL-3.0), RGLab/MAST (no license)

Status: code verified, 158 files readable, 18 matches

[12990] doi:10.1016/j.ynirp.2025.100289 [paper, repository]

A transdiagnostic, multi-modal approach to understanding apathy: Methodological and analytical framework.

Journal: Neuroimage. Reports

Authors' code: cran.r-project.org/web/packages (no license)

Status: code verified

[12991] doi:10.1017/neu.2025.10036 [paper, repository]

MR spectroscopic imaging and its association with EEG, CSF, and psychometric/neuropsychological findings in patients with suspected autoimmune psychosis spectrum syndromes.

Journal: Acta neuropsychiatrica

Authors' code: berndf/avg_q (GPL-3.0)

Status: code verified, 494 files readable

[12992] doi:10.1038/s41380-025-03246-z [paper, repository]

Mutations of schizophrenia risk gene SETD1A dysregulate synaptic function in human neurons.

Journal: Molecular psychiatry

Authors' code: Zenodo 13840811 (CC-BY-4.0), jiayiliujiayi/esnpkaryotype (CC0-1.0)

Status: code verified, 48 files readable, 2 matches

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.