Every paper, by date: page 68

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 68 of 200: 15 July 2025 to 8 July 2025.

Tuesday, 15 July 2025 (49 papers, 29 on this page)

[15009] doi:10.1073/pnas.2500871122 [paper, data]

Foxn3 is required to suppress aberrant ciliogenesis in nonphotoreceptor retinal neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 4 datasets cited

[15010] doi:10.1073/pnas.2506560122 [paper, data]

Structural basis of the inhibition of TRPV1 by analgesic sesquiterpenes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[15011] doi:10.1093/braincomms/fcaf263 [paper, repository]

Hyperuricaemia is associated with smaller volumes in the caudate nucleus head and putamen.

Journal: Brain communications

Authors' code: NaokiOMORI-hub (no license)

Status: code verified

[15012] doi:10.1101/2025.07.10.663870 [paper, repository]

Beta burst waveform extraction using novel ⁴ He-OPMs

Journal: bioRxiv (preprint)

Authors' code: tgutteling/OPM_Motor (no license), danclab/burst_detection (no license)

Status: code verified, 25 files readable, 8 matches

[15013] doi:10.1101/2025.07.10.663897 [paper, repository]

DeepDisco: A Deep Learning Tool for Rapid Brain Connectivity Estimation

Journal: bioRxiv (preprint)

Authors' code: annamatsulevits/DeepDisco (no license)

Status: code verified, 6 files readable

[15014] doi:10.1101/2025.07.10.664116 [paper, repository]

A Canonical Microcircuit for Estimating Excitation/Inhibition (E/I) Balance

Journal: bioRxiv (preprint)

Authors' code: daniel-hauke/dcm_ei (no license)

Status: code verified, 107 files readable, 15 matches

[15015] doi:10.1111/jcpp.70013 [paper, repository]

Childhood Mild Traumatic Brain Injury is Reliably Associated with Anxiety but Not Other Examined Psychiatric Outcomes at Two-Year Follow-up, After Adjusting for Prior Mental Health.

Journal: Journal of child psychology and psychiatry, and allied disciplines

Authors' code: GraceRevill/pTBI-neuropsychiatric-outcomes (MIT)

Status: code verified, 8 files readable, 13 matches

[15016] doi:10.1128/mbio.01497-25 [paper, data]

Interferon-stimulated circHOMER1 attenuates antiviral innate immunity.

Journal: mBio

Status: data only, 1 dataset cited

[15017] doi:10.1162/nol.a.7 [paper, repository]

Brain Segregation and Integration Relate to Word-Finding Abilities in Older and Younger Adults.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF u6p42 (no license)

Status: empty repository

[15018] doi:10.1162/nol_a_00171 [paper, repository]

Using Rapid Invisible Frequency Tagging (RIFT) to Probe the Neural Interaction Between Representations of Speech Planning and Comprehension.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF nzp6u (no license)

Status: code verified, 9 files readable, 5 matches

[15019] doi:10.1172/jci.insight.188459 [paper]

Chronic integrated stress response causes dysregulated cholesterol synthesis in white matter disease.

Journal: JCI insight

Status: data only

[15020] doi:10.1172/jci.insight.192047 [paper, data]

Inhibition of AhR improves cortical bone and skeletal muscle function via preservation of neuromuscular junctions.

Journal: JCI insight

Status: data only, 1 dataset cited

[15021] doi:10.1172/jci190470 [paper, repository]

HIF-1 promotes murine breast cancer brain metastasis by increasing production of integrin β3-containing extracellular vesicles.

Journal: The Journal of clinical investigation

Authors' code: VarenTalwar/transwell-cellcounting (no license)

Status: code verified, 3 files readable

[15022] doi:10.1186/s11556-025-00378-7 [paper, data]

The alternation of neural oscillations during dual task standing in older adults with low back pain.

Journal: European review of aging and physical activity : official journal of the European Group for Research into Elderly and Physical Activity

Status: data only, 1 dataset cited

[15023] doi:10.1186/s13195-025-01808-5 [paper]

Cardiovascular risk factors are associated with lower posterior-medial network functional connectivity in older adults.

Journal: Alzheimer's research & therapy

Status: code on request

[15024] doi:10.1186/s13195-025-01809-4 [paper, data]

Age-related differences in Rostral-Middle locus coeruleus microstructure: A critical role in cognitive decline revealed by magnetic resonance relaxometry.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[15025] doi:10.1242/bio.062010 [paper, data]

Ethanol induces subcellular trafficking of the RNA-binding protein, hnRNP A1, in neuronal cells in vitro, but not in the peripubertal rat brain.

Journal: Biology open

Status: data only, 1 dataset cited

[15026] doi:10.1371/journal.pbio.3003247 [paper, data]

Long-term musical training can protect against age-related upregulation of neural activity in speech-in-noise perception.

Journal: PLoS biology

Status: data only, 1 dataset cited

[15027] doi:10.1523/eneuro.0009-25.2025 [paper, repository]

CalTrig: A GUI-Based Machine Learning Approach for Decoding Neuronal Calcium Transients in Freely Moving Rodents.

Journal: eNeuro

Authors' code: cci-malab/calcium-transient-analysis (GPL-3.0)

Status: code verified, 40 files readable, 15 matches

[15028] doi:10.1523/eneuro.0369-24.2025 [paper, repository]

DeepEthoProfile-Rapid Behavior Recognition in Long-Term Recorded Home-Cage Mice.

Journal: eNeuro

Authors' code: WinterLab-Berlin/DeepEthoProfile (GPL-3.0), Zenodo 14827053 (GPL-3.0)

Status: code verified, 27 files readable, 5 matches

[15029] doi:10.21203/rs.3.rs-6858161/v1 [paper, repository]

Anterior cingulate cortex mixes retrospective cognitive signals and ongoing movement signatures during decision-making

Journal: Research Square (preprint)

Authors' code: churchlandlab/chipmunk (no license), jcouto/fit_psychometric (GPL-3.0), churchlandlab/chiCa (no license), jcouto/labdata-tools (GPL-3.0), jcouto/wfield (GPL-3.0), Lukasfiesch/Oesch_et_al_Trial_History_ACC (no license)

Status: code verified, 193 files readable, 15 matches

[15030] doi:10.2147/jir.s521744 [paper, data]

Integrated Single-Cell and Spatial Transcriptomic Analysis Identifies ISR-Related Genes Driving Immune Regulation in Parkinson's Disease.

Journal: Journal of inflammation research

Status: data only, 1 dataset cited

[15031] doi:10.3389/fmed.2025.1590201 [paper, data]

An explainable and efficient deep learning framework for EEG-based diagnosis of Alzheimer's disease and frontotemporal dementia.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[15032] doi:10.3390/brainsci15070752 [paper, repository]

SAGEFusionNet: An Auxiliary Supervised Graph Neural Network for Brain Age Prediction as a Neurodegenerative Biomarker.

Journal: Brain sciences

Authors' code: NeuralLabIITGuwahati/SAGEFusionNet (GPL-3.0)

Status: code verified, 2 files readable

[15033] doi:10.3390/diagnostics15141782 [paper, data]

Majority Voting Ensemble of Deep CNNs for Robust MRI-Based Brain Tumor Classification.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[15034] doi:10.3390/ijms26146762 [paper, data]

Integrated Behavioral and Proteomic Characterization of MPP<sup>+</sup>-Induced Early Neurodegeneration and Parkinsonism in Zebrafish Larvae.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[15035] doi:10.3390/ijms26146788 [paper, data]

Impact of SOD1 Transcript Variants on Amyotrophic Lateral Sclerosis Severity.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[15036] doi:10.3390/s25144411 [paper]

Utilizing Tympanic Membrane Temperature for Earphone-Based Emotion Recognition.

Journal: Sensors (Basel, Switzerland)

Status: code on request

[15037] doi:10.7554/elife.95324 [paper, repository]

EPHA4 signaling dysregulation links abnormal locomotion and the development of idiopathic scoliosis.

Journal: eLife

Authors' code: kids-first/kf-alignment-workflow (Apache-2.0)

Status: code verified, 9 files readable

Monday, 14 July 2025 (32 papers)

[15038] doi:10.1002/advs.202503344 [paper, repository]

A Machine-Learning Approach Identifies Rejuvenating Interventions in the Human Brain.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: www.gitlab.lcsb.uni.lu/cbg/brain_clock (no license), www.gitlab.lcsb.uni.lu/cbg/brainageshiftr (no license)

Status: dead link

[15039] doi:10.1002/advs.202505844 [paper]

Metabolic Programming Drives Protective and Inflammatory Monocyte Fates in Viral Encephalitis.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[15040] doi:10.1002/jez.70011 [paper, data]

Population Variation in Steroid Hormone-Related Gene Expression and Sexually Dimorphic Communication in the Electric Fish Apteronotus albifrons.

Journal: Journal of experimental zoology. Part A, Ecological and integrative physiology

Status: data only, 1 dataset cited

[15041] doi:10.1002/mco2.70271 [paper, data]

Microglial Transient Receptor Potential Melastatin 2 Deficiency Accelerates Seizure Development via Increasing AMPAR-Mediated Neuronal Excitability.

Journal: MedComm

Status: data only, 1 dataset cited

[15042] doi:10.1016/j.celrep.2025.115991 [paper]

Physiological and injury-induced microglial dynamics across the lifespan.

Journal: Cell reports

Status: code on request

[15043] doi:10.1016/j.isci.2025.113125 [paper]

Aversively conditioned context enhances visual size illusion via stimulus-specific neural networks.

Journal: iScience

Status: code on request

[15044] doi:10.1016/j.neuroimage.2025.121370 [paper, repository]

STF: A spherical transformer for versatile cortical surfaces applications.

Journal: NeuroImage

Authors' code: BRAIN-Lab-UNC/Spherical-Transformer (no license)

Status: empty repository, 1 file readable

[15045] doi:10.1016/j.nicl.2025.103818 [paper, repository]

Fluid and White Matter Suppression contrasts MRI improves Deep Learning detection of Multiple Sclerosis Cortical Lesions.

Journal: NeuroImage. Clinical

Authors' code: hub.docker.com/r/petermcgor (no license)

Status: code verified

[15046] doi:10.1038/s41467-025-60337-9 [paper, data]

Paradoxical mTORC1-Dependent microRNA-mediated Translation Repression in the Nucleus Accumbens of Male Mice Consuming Alcohol Attenuates Glycolysis.

Journal: Nature communications

Status: data only, 1 dataset cited

[15047] doi:10.1038/s41467-025-61532-4 [paper, repository]

Deep-tissue high-sensitivity multimodal imaging and optogenetic manipulation enabled by biliverdin reductase knockout.

Journal: Nature communications

Authors' code: gitlab.oit.duke.edu/pilab/blvra (no license)

Status: code verified, 3 files readable

[15048] doi:10.1038/s41467-025-61706-0 [paper, repository]

A neurofunctional signature of affective arousal generalizes across valence domains and distinguishes subjective experience from autonomic reactivity.

Journal: Nature communications

Authors' code: OSF m3fjb (no license), canlab/2021_Ceko_MPA2_Aversive (no license), canlab/CanlabCore (GPL-2.0)

Status: code verified, 2,080 files readable, 9 matches

[15049] doi:10.1038/s41467-025-61881-0 [paper, data]

Phase separated condensates of ATRX regulate neural progenitor identity.

Journal: Nature communications

Status: data only, 1 dataset cited

[15050] doi:10.1038/s41593-025-01987-2 [paper, repository]

An expanded subventricular zone supports postnatal cortical interneuron migration in gyrencephalic brains.

Journal: Nature neuroscience

Authors' code: aunoyp/arc (MIT)

Status: code verified, 29 files readable, 17 matches

[15051] doi:10.1038/s41597-025-05449-z [paper, repository]

The Chongqing Adolescent Twin Study: An Integrative Multimodal Brain Imaging and Non-imaging Dataset.

Journal: Scientific data

Authors' code: layerConnectome/CATS (no license), Zenodo 15335779 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

[15052] doi:10.1038/s41598-025-10039-5 [paper, repository]

Cognitive control states and traits modulate lexical competition during word production.

Journal: Scientific reports

Authors' code: OSF mwxsc (no license)

Status: code verified, 3 files readable, 1 match

[15053] doi:10.1038/s41598-025-11743-y [paper, data]

A hybrid learning approach for MRI-based detection of alzheimer's disease stages using dual CNNs and ensemble classifier.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15054] doi:10.1073/pnas.2422742122 [paper, data]

Dynamic neuroplasticity of language networks: The intersection of bilingualism and epilepsy.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[15055] doi:10.1073/pnas.2507810122 [paper, data]

Visual adaptation stronger at the horizontal than the vertical meridian: Linking performance with V1 cortical surface area.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[15056] doi:10.1111/jne.70067 [paper, repository]

Stress alters hypothalamic gene expression in adolescent male Golden hamsters.

Journal: Journal of neuroendocrinology

Authors' code: kmoran10/Project-RNA-tag-seq (no license)

Status: code verified, 30 files readable, 8 matches

[15057] doi:10.1111/joa.70010 [paper, data]

Palaeohistology and life history of the early Palaeocene taeniodont Conoryctes comma (Mammalia: Eutheria).

Journal: Journal of anatomy

Status: data only, 1 dataset cited

[15058] doi:10.1152/jn.00164.2025 [paper, repository]

Feeding state-specific hormonal tuning of neural circuit modulation.

Journal: Journal of neurophysiology

Authors' code: pypi.org/project/stns (no license), LoganJF/hormonaltuning (GPL-3.0)

Status: code verified, 9 files readable, 4 matches

[15059] doi:10.1162/imag.a.69 [paper, repository]

High-power transient 12-30 Hz beta event features as early biomarkers of Alzheimer's disease conversion: An MEG study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: jonescompneurolab/SpectralEvents (BSD-3-Clause)

Status: code verified, 13 files readable, 3 matches

[15060] doi:10.1162/imag.a.70 [paper, repository]

40 Hz light stimulation restores early brain dynamics alterations and associative memory in Alzheimer's disease model mice.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: FunSyCNRS (no license)

Status: code verified

[15061] doi:10.1162/imag.a.73 [paper, repository]

An evaluation of image-based and statistical techniques for harmonizing brain volume measurements.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Jfortin1/neuroCombat_Rpackage (no license), iacl/synmi (Apache-2.0), lianruizuo/haca3 (no license)

Status: code verified, 39 files readable, 2 matches

[15062] doi:10.1162/imag.a.80 [paper, data]

Cerebrovascular reactivity mapping using breath-hold BOLD-fMRI: Comparison of signal models combined with voxelwise lag optimization.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[15063] doi:10.1186/s12864-025-11758-9 [paper, repository]

Antennal RNAseq reveals odorant receptors with sex-biased expression in the common eastern firefly, Photinus pyralis.

Journal: BMC genomics

Authors' code: selower/Photinus_pyralis_ORs (MIT), ewynn610/REBEL (other)

Status: code verified, 41 files readable, 12 matches

[15064] doi:10.1186/s13024-025-00874-5 [paper, data]

Proteomic landscape of Alzheimer's disease: emerging technologies, advances and insights (2021 - 2025).

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[15065] doi:10.1371/journal.pbio.3003273 [paper, repository]

Sensory and motor contents are prioritized dynamically in working memory.

Journal: PLoS biology

Authors' code: OSF j5af8 (no license)

Status: code verified, 18 files readable, 5 matches

[15066] doi:10.1371/journal.pgen.1011748 [paper, data]

Semaphorin 3f and post-embryonic regulation of retinal progenitors.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[15067] doi:10.1371/journal.pone.0327256 [paper, data]

Integrative Role of RNA N7-methylguanosine in epilepsy: Regulation of neuronal oxidative phosphorylation, programmed death and immune microenvironment.

Journal: PloS one

Status: data only, 1 dataset cited

[15068] doi:10.7554/elife.100258 [paper, repository]

Normative evidence weighing and accumulation in correlated environments.

Journal: eLife

Authors' code: TheGoldLab/Analysis_Tardiff_Kang_Correlated (no license)

Status: code verified, 43 files readable, 3 matches

[15069] doi:10.7554/elife.104076 [paper, data]

PRDM16 functions as a co-repressor in the BMP pathway to suppress neural stem cell proliferation.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 13 July 2025 (6 papers)

[15070] doi:10.1002/advs.202508386 [paper, repository]

Neural Topology Optimization Via Active Learning for Efficient Channel Design in Turbulent Mass Transfer.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: lu-group/neural-topology-optimization (Apache-2.0)

Status: code verified, 10 files readable

[15071] doi:10.1002/eat.24496 [paper, repository]

Psychobiological Exercise Response: A Pilot Investigation of a Laboratory Exercise Assessment Paradigm Among Young Women With Eating Disorders.

Journal: The International journal of eating disorders

Authors' code: embark-lab/maxed_rr (no license)

Status: code verified, 126 files readable, 18 matches

[15072] doi:10.1016/j.neuroimage.2025.121371 [paper]

7 tesla multiscale entropy analysis reveals increased resting-state complexity in key regions for fear and anxiety in spider-fearful individuals.

Journal: NeuroImage

Status: code on request

[15073] doi:10.1016/j.nicl.2025.103844 [paper]

Evidence for temporal disintegration of information processing during sensorimotor integration in GTS.

Journal: NeuroImage. Clinical

Status: code on request

[15074] doi:10.1016/j.nicl.2025.103845 [paper, repository]

Altered network connectivity and global efficiency in tourette syndrome: insights into sensorimotor integration.

Journal: NeuroImage. Clinical

Authors' code: JuliSchmidgen/rPLV-Connectivity-Analysis (no license)

Status: code verified, 8 files readable, 7 matches

[15075] doi:10.1186/s12967-025-06739-1 [paper, data]

Multi-omics analysis for identifying cell-type-specific and bulk-level druggable targets in Alzheimer's disease.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

Saturday, 12 July 2025 (14 papers)

[15076] doi:10.1007/s10753-025-02330-4 [paper, data]

Zmiz1-Mediated SUMOylation of NLRP3 Inflammasome Regulates Satellite Glial Cell Activation and Neuronal Autophagy in Trigeminal Neuralgia.

Journal: Inflammation

Status: data only, 1 dataset cited

[15077] doi:10.1016/j.isci.2025.112952 [paper]

Glycosaminoglycan sugar side chains on perineuronal nets in the fastigial nucleus regulate motor skills.

Journal: iScience

Status: code on request

[15078] doi:10.1016/j.neurobiolaging.2025.07.008 [paper]

Longitudinal non-linear changes in the microstructure of the hippocampal subfields in older adults.

Journal: Neurobiology of aging

Status: code on request

[15079] doi:10.1038/s41467-025-61579-3 [paper, repository]

Highly adaptable deep-learning platform for automated detection and analysis of vesicle exocytosis.

Journal: Nature communications

Authors' code: AbedChouaib/IVEA (GPL-3.0), Zenodo 15498139 (GPL-3.0), Zenodo 15498138 (GPL-3.0)

Status: code verified, 41 files readable, 5 matches

[15080] doi:10.1038/s41531-025-01011-1 [paper, repository]

Transformer-based long-term predictor of subthalamic beta activity in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: falciglia/sant-anna-pisa (no license)

Status: code verified, 6 files readable

[15081] doi:10.1038/s41597-025-05540-5 [paper, data]

A Cross-Species Brain Magnetic Resonance Imaging and Histology Database of Vertebrates.

Journal: Scientific data

Status: data only, 1 dataset cited

[15082] doi:10.1038/s41598-025-07773-1 [paper, data]

Accurate and real-time brain tumour detection and classification using optimized YOLOv5 architecture.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15083] doi:10.1038/s41598-025-09646-z [paper, data]

Identification of hub six interferon alpha response genes and immune cell infiltration characteristics in low-grade glioma.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15084] doi:10.1038/s41598-025-10586-x [paper]

A scalable reinforcement learning framework inspired by hippocampal memory mechanisms for efficient contextual and sequential decision making.

Journal: Scientific reports

Status: code on request

[15085] doi:10.1101/2025.07.09.663990 [paper, data]

Differences in brain activity during sentence repetition in people who stutter: a combined analysis of four fMRI studies

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[15086] doi:10.1111/acel.70169 [paper, data]

The Transcriptome Trajectory Reveals Sex- and Age-Dependent Changes in the Mouse Adrenal Gland.

Journal: Aging cell

Status: data only, 2 datasets cited

[15087] doi:10.1159/000547306 [paper, data]

Head Positioning for Stroke Blood Flow Augmentation Assisting Reperfusion Therapies Study.

Journal: Cerebrovascular diseases (Basel, Switzerland)

Status: data only, 1 dataset cited

[15088] doi:10.1186/s13195-025-01802-x [paper, repository]

An improved immunoassay detects Aβ oligomers in human biofluids: their CSF levels rise with tau and phosphotau levels.

Journal: Alzheimer's research & therapy

Authors' code: udettmer/dettmerlab (no license)

Status: empty repository

[15089] doi:10.3390/ijms26146706 [paper, repository]

Identification and Characterization of a Translational Mouse Model for Blood-Brain Barrier Leakage in Cerebral Small Vessel Disease.

Journal: International journal of molecular sciences

Authors' code: petmri/ROCKETSHIP (GPL-2.0)

Status: code verified, 202 files readable, 4 matches

Friday, 11 July 2025 (40 papers)

[15090] doi:10.1002/advs.202416315 [paper, data]

The DEC2-SCN2A Axis is Essential for the Anticonvulsant Effects of Cannabidiol by Modulating Neuronal Plasticity.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[15091] doi:10.1016/j.iot.2025.101671 [paper, repository]

A feedback-driven brain organoid platform enables automated maintenance and high-resolution neural activity monitoring.

Journal: Internet of things (Amsterdam, Netherlands)

Authors' code: braingeneers/feedback-organoid-platform (other)

Status: code verified, 24 files readable, 9 matches

[15092] doi:10.1016/j.isci.2025.113089 [paper, data]

Collateralization patterns of principal basolateral amygdala neurons delineate distinct output streams.

Journal: iScience

Status: data only, 2 datasets cited

[15093] doi:10.1016/j.molpha.2025.100060 [paper, data]

Molecular determinants of 2-aminoethoxydiphenyl borate sensitivity of transient receptor potential vanilloid 2-unexpected differences between 2 rodent orthologs.

Journal: Molecular pharmacology

Status: data only, 1 dataset cited

[15094] doi:10.1038/s41398-025-03452-x [paper, data]

Integrative analysis identifies IL-6/JUN/MMP-9 pathway destroyed blood-brain-barrier in autism mice via machine learning and bioinformatic analysis.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[15095] doi:10.1038/s41467-025-60771-9 [paper, repository]

Chromatin heterogeneity modulates nuclear condensate dynamics and phase behavior.

Journal: Nature communications

Authors' code: xiajing09/Chromatin-heterogeneity-and-phase-behavior (no license)

Status: empty repository, 1 file readable

[15096] doi:10.1038/s41467-025-61453-2 [paper, repository]

Direct entorhinal control of CA1 temporal coding.

Journal: Nature communications

Authors' code: NeuroNetMem/LinearTrack_Code (no license)

Status: code verified, 31 files readable, 3 matches

[15097] doi:10.1038/s41467-025-61544-0 [paper, repository]

Gut microbiota and brain-resident CD4<sup>+</sup> T cells shape behavioral outcomes in autism spectrum disorder.

Journal: Nature communications

Authors' code: IMB-AI/JohnPark-ASD (GPL-3.0), Zenodo 15478642 (GPL-3.0)

Status: code verified, 8 files readable

[15098] doi:10.1038/s41467-025-61792-0 [paper, repository]

A tactile discrimination task to study neuronal dynamics in freely-moving mice.

Journal: Nature communications

Authors' code: grohlab/a-tactile-discrimination-task-to-study-neuronal-dynamics-in-freely-moving-mice (no license), syntalos/syntalos (no license), alleninstitute/ecephys_spike_sorting (BSD-2-Clause), Zenodo 15051370 (CC-BY-4.0), Zenodo 13369686 (CC-BY-4.0), Zenodo 21429438 (MIT), Zenodo 21429439 (MIT)

Status: code verified, 965 files readable, 6 matches

[15099] doi:10.1038/s41467-025-61807-w [paper, repository]

Neural dynamics of spontaneous memory recall and future thinking in the continuous flow of thoughts.

Journal: Nature communications

Authors' code: Zenodo 15665444 (CC-BY-4.0), lee-memory-cognition-lab/thinkaloud_paper (no license)

Status: code verified, 3 files readable, 13 matches

[15100] doi:10.1038/s41526-025-00497-6 [paper, repository]

Transient gray matter decline during antarctic isolation: Roles of sleep, exercise, and cognition.

Journal: NPJ microgravity

Authors' code: upenn/nasa_concordia (no license)

Status: code verified, 4 files readable, 5 matches

[15101] doi:10.1038/s41531-025-01055-3 [paper]

Parkinson's paradox: alpha-synuclein's selective strike on SNc dopamine neurons over VTA.

Journal: NPJ Parkinson's disease

Status: code on request

[15102] doi:10.1038/s41597-025-05350-9 [paper, repository]

In vivo submillimeter diffusion MRI dataset of 9 macaque brains curated for tractography.

Journal: Scientific data

Authors' code: AlexVCaron/versaFlow (other), yu02019/BEN (no license), scilus/dmriqcpy (MIT), Zenodo 15198353 (CC-BY-4.0), Zenodo 13989521 (CC-BY-4.0)

Status: code verified, 213 files readable, 5 matches

[15103] doi:10.1038/s41598-025-08871-w [paper]

Population-based spectral characteristics of normal interictal scalp EEG inform diagnosis and treatment planning in focal epilepsy.

Journal: Scientific reports

Status: code on request

[15104] doi:10.1038/s41598-025-08958-4 [paper, repository]

The relationship between the APOE genotypes and memory performance of young adults and its neural basis.

Journal: Scientific reports

Authors' code: YaleMRRC/CPM (no license)

Status: code verified, 41 files readable, 2 matches

[15105] doi:10.1038/s41598-025-10912-3 [paper, repository]

Structural differences between human and mouse neurons and their implementation in generative AIs.

Journal: Scientific reports

Authors' code: mizutanilab.github.io (no license), jleinonen/keras-fid (MIT)

Status: code verified, 3 files readable, 2 matches

[15106] doi:10.1038/s42003-025-08465-2 [paper, data]

Changes in cortical beta power predict motor control flexibility, not vigor.

Journal: Communications biology

Status: data only, 1 dataset cited

[15107] doi:10.1038/s42003-025-08474-1 [paper, repository]

Human and artificial visual systems share a computational principle for transforming binocular disparity into depth representation.

Journal: Communications biology

Authors' code: hiroshiban/Retinotopy (BSD-2-Clause), zyf12389/gc-net (no license), wundari/CMM_model (no license)

Status: code verified, 349 files readable, 27 matches

[15108] doi:10.1038/s43588-025-00826-5 [paper, repository]

Inter-individual and inter-site neural code conversion without shared stimuli.

Journal: Nature computational science

Authors' code: bvlc/caffe (BSD-2-Clause), Zenodo 14910040 (MIT), KamitaniLab/InterSiteNeuralCodeConversion (MIT)

Status: code verified, 410 files readable, 18 matches

[15109] doi:10.1101/2025.07.11.664337 [paper]

The gut microbiota and sleep in infants: a focus on diurnal rhythmicity patterns

Journal: bioRxiv (preprint)

Status: code on request

[15110] doi:10.1117/1.jbo.30.7.076004 [paper, repository]

Automatic photoacoustic monitoring of perinatal brain hypoxia with superior sagittal sinus detection.

Journal: Journal of biomedical optics

Authors' code: bcjiang/hypodetect (MIT)

Status: code verified, 8 files readable, 2 matches

[15111] doi:10.1126/sciadv.adt3778 [paper, repository]

Proteins with cognition-associated structural changes in a rat model of aging exhibit reduced refolding capacity.

Journal: Science advances

Authors' code: Zenodo 15103402 (CC-BY-4.0)

Status: code verified, 1 file readable

[15112] doi:10.1126/sciadv.adv7576 [paper, repository]

Structural and genetic determinants of zebrafish functional brain networks.

Journal: Science advances

Authors' code: pdesrosiers/Legare-zebrafish-brain-networks (no license), Zenodo 15224945 (CC-BY-4.0)

Status: code verified, 7 files readable, 9 matches

[15113] doi:10.1126/sciadv.adv9106 [paper, data]

Decoding sexual dimorphism of the sex-shared nervous system at single-neuron resolution.

Journal: Science advances

Status: data only, 1 dataset cited

[15114] doi:10.1186/s12993-025-00287-w [paper, data]

Knockout of Bmal1 in dopaminergic neurons induces ADHD-like symptoms via hyperactive dopamine signaling in male mice.

Journal: Behavioral and brain functions : BBF

Status: data only, 1 dataset cited

[15115] doi:10.1186/s13063-025-08950-3 [paper, data]

Effects of generative artificial intelligence on cognitive effort and task performance: study protocol for a randomized controlled experiment among college students.

Journal: Trials

Status: data only, 1 dataset cited

[15116] doi:10.1186/s40246-025-00793-y [paper, data]

Integrating gut microbiome and neuroplasticity genomics in alcohol use disorder therapy.

Journal: Human genomics

Status: data only, 1 dataset cited

[15117] doi:10.1186/s40779-025-00620-4 [paper, data]

Epileptic seizure biophysics: the role of local voltage difference.

Journal: Military Medical Research

Status: data only, 1 dataset cited

[15118] doi:10.1371/journal.pbio.3003197 [paper, repository]

Cilia in the brain display region-dependent oscillations of length and orientation.

Journal: PLoS biology

Authors' code: supp:PMC12250621/pbio.3003197.s001.zip (no license)

Status: code verified, 3 files readable, 12 matches

[15119] doi:10.1371/journal.pdig.0000890 [paper, repository]

Short-horizon neonatal seizure prediction using EEG-based deep learning.

Journal: PLOS digital health

Authors' code: dbernardo05/qeegfeats (BSD-3-Clause), dbernardo05/neoSeer (MIT)

Status: code verified, 26 files readable, 3 matches

[15120] doi:10.1371/journal.pgen.1011778 [paper, repository]

Discovery of oligodendrocyte enhancers that regulate Sox10 expression.

Journal: PLoS genetics

Authors' code: dixonlab/scm3C-seq (no license)

Status: code verified, 14 files readable

[15121] doi:10.3389/fnagi.2025.1566247 [paper, repository]

Cerebellar MRI-based radiomics models for identifying mild cognitive impairment: a retrospective multicenter study in Southeast China.

Journal: Frontiers in aging neuroscience

Authors' code: mvallieres/radiomics (GPL-3.0)

Status: code verified, 361 files readable, 4 matches

[15122] doi:10.3389/fnins.2025.1622847 [paper, data]

SVM-enhanced attention mechanisms for motor imagery EEG classification in brain-computer interfaces.

Journal: Frontiers in neuroscience

Status: data only, 3 datasets cited

[15123] doi:10.3389/fpsyt.2025.1556983 [paper, data]

A network analysis of gene co-expression in post-mortem brain tissues identifying novel genes and biological pathways underlying major depression.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[15124] doi:10.3389/frai.2025.1614608 [paper, repository]

High-resolution image inpainting using a probabilistic framework for diverse images with large arbitrary masks.

Journal: Frontiers in artificial intelligence

Authors' code: NVlabs/ffhq-dataset (CC0-1.0)

Status: code verified, 8 files readable

[15125] doi:10.3390/brainsci15070746 [paper, data]

GABAergic Influences on Medulloblastoma.

Journal: Brain sciences

Status: data only, 1 dataset cited

[15126] doi:10.3390/ijms26146653 [paper, data]

Simulated Microgravity Attenuates Stretch Sensitivity of Mechanically Gated Channels in Rat Ventricular Myocytes.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[15127] doi:10.3390/ijms26146680 [paper, repository]

In Silico Analysis of Post-COVID-19 Condition (PCC) Associated SNP rs9367106 Predicts the Molecular Basis of Abnormalities in the Lungs and Brain Functions.

Journal: International journal of molecular sciences

Authors' code: aidenlab/Juicebox (MIT)

Status: code verified, 344 files readable

[15128] doi:10.7554/elife.101105 [paper, repository]

Ultraslow serotonin oscillations in the hippocampus delineate substates across NREM and waking.

Journal: eLife

Authors' code: clairecooper2193/ripNet (MIT), buzsakilab/buzcode (GPL-3.0)

Status: code verified, 2,006 files readable, 12 matches

[15129] doi:10.7554/elife.97326 [paper, data]

Acquisition of auditory discrimination mediated by different processes through two distinct circuits linked to the lateral striatum.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 10 July 2025 (40 papers)

[15130] doi:10.1016/j.isci.2025.113085 [paper]

Conditional deletion of TRPC1 channel modulates synaptic plasticity, long term depression, and memory extinction in Fragile X syndrome mice.

Journal: iScience

Status: code on request

[15131] doi:10.1016/j.isci.2025.113088 [paper]

Dynamic functional MRI markers of drowsiness during sleep onset period.

Journal: iScience

Status: code on request

[15132] doi:10.1016/j.jcte.2025.100408 [paper, data]

Collagen in pituitary adenomas: A comprehensive review of biological roles and clinical implications.

Journal: Journal of clinical & translational endocrinology

Status: data only, 1 dataset cited

[15133] doi:10.1038/s41419-025-07815-6 [paper, data]

Rb substantially compensates for the double loss of p130 and p107 in adult but not embryonic neural stem cell lineages.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[15134] doi:10.1038/s41467-025-61465-y [paper, repository]

Functional development of the human cerebellum from birth to age five.

Journal: Nature communications

Authors' code: jdiedrichsen/suit (no license), xaviergp/littlebrain (Apache-2.0), maartenmennes/ICA-AROMA (Apache-2.0)

Status: code verified, 54 files readable, 6 matches

[15135] doi:10.1038/s41467-025-61497-4 [paper, repository]

Synaptic loss pattern is constrained by brain connectome and modulated by phosphorylated tau in Alzheimer's disease.

Journal: Nature communications

Authors' code: yluan-seu/SV2A_propagation (no license), iDIO4dMRI/iDIO (no license), Zenodo 15609808 (CC-BY-4.0)

Status: code verified, 22 files readable, 13 matches

[15136] doi:10.1038/s41467-025-61643-y [paper, data]

A divergent astrocytic response to stress alters activity patterns via distinct mechanisms in male and female mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[15137] doi:10.1038/s41514-025-00251-y [paper]

p300 inhibition delays premature cellular senescence.

Journal: npj aging

Status: data only

[15138] doi:10.1038/s41531-025-01053-5 [paper]

Long-term consistency of aperiodic and periodic physiomarkers in subthalamic local field potentials in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[15139] doi:10.1038/s41539-025-00337-y [paper, data]

Reading comprehension in L1 and L2 readers: neurocomputational mechanisms revealed through large language models.

Journal: NPJ science of learning

Status: code on request, 2 datasets cited

[15140] doi:10.1038/s41598-025-03408-7 [paper, repository]

Biologically-informed excitatory and inhibitory ratio for robust spiking neural network training.

Journal: Scientific reports

Authors' code: ADAM-Lab-GW/E-I-SNN (BSD-3-Clause)

Status: code verified, 81 files readable, 4 matches

[15141] doi:10.1038/s41598-025-05958-2 [paper, data]

An ODE based neural network approach for PM2.5 forecasting.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15142] doi:10.1038/s41598-025-07699-8 [paper, repository]

Joint contribution of adaptation and neuronal population recruitment to response level in visual area MT: a computational model.

Journal: Scientific reports

Authors' code: Zenodo 10753265 (CC-BY-4.0), mariainescravo/plaids-adaptation (MIT)

Status: code verified, 26 files readable, 2 matches

[15143] doi:10.1038/s41598-025-09705-5 [paper, repository]

Temporal profiling of host transcriptome highlights time- and tissue-dependent Interferon pathway activation in NNV-infected European sea bass.

Journal: Scientific reports

Authors' code: yyoshiaki/VIRTUS2 (CC-BY-NC-4.0), dmarron/virdetect (no license)

Status: code verified, 32 files readable

[15144] doi:10.1038/s41598-025-09742-0 [paper, data]

Comprehensive multi-omics and machine learning framework for glioma subtyping and precision therapeutics.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15145] doi:10.1038/s42003-025-08378-0 [paper, data]

Mineralocorticoid receptor knockout alters hippocampal CA2 neurons to become like those in CA1.

Journal: Communications biology

Status: data only, 1 dataset cited

[15146] doi:10.1038/s42003-025-08456-3 [paper, repository]

Analysis of biased allelic enhancer activity of schizophrenia-linked common variants.

Journal: Communications biology

Authors' code: gaochengwen/STARR-seq-Data-Analysis (no license)

Status: code verified, 14 files readable

[15147] doi:10.1038/s42003-025-08464-3 [paper, repository]

How EEG preprocessing shapes decoding performance.

Journal: Communications biology

Authors' code: kesslerr/m4d (CC-BY-4.0)

Status: code verified, 113 files readable, 23 matches

[15148] doi:10.1038/s44277-025-00035-y [paper, repository]

A deep learning software tool for automated sleep staging in rats via single channel EEG.

Journal: NPP - digital psychiatry and neuroscience

Authors' code: smithandrewk/sleepyrats-ml (no license)

Status: dead link

[15149] doi:10.1038/s44319-025-00503-8 [paper, repository]

Growth phase diets diminish histone acetyltransferase Gcn5 function and shorten lifespan of Drosophila males.

Journal: EMBO reports

Authors' code: FelixKrueger/TrimGalore (GPL-3.0)

Status: code verified, 31 files readable

[15150] doi:10.1039/d5ra02010g [paper, repository]

MoTe<sub>2</sub> synaptic transistor and its application to physical reservoir computing.

Journal: RSC advances

Authors' code: figshare 28642523 (no license)

Status: dead link

[15151] doi:10.1073/pnas.2503088122 [paper, repository]

Orientation fields predict human perception of 3D shape from shading.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF rb943 (no license)

Status: code verified, 17 files readable, 7 matches

[15152] doi:10.1073/pnas.2509003122 [paper, repository]

Glycogen supports glycolytic plasticity in neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 15742216 (CC-BY-4.0)

Status: code verified

[15153] doi:10.1097/js9.0000000000002941 [paper, data]

Integrative multi-omics analysis reveal novel therapeutic targets for glioblastoma.

Journal: International journal of surgery (London, England)

Status: data only, 1 dataset cited

[15154] doi:10.1101/2025.07.09.25331177 [paper, repository]

Automated Detection of Lacunes in Brain MR Images Using SAM with Robust Prompts via Self-Distillation and Anatomy-Informed Priors

Journal: medRxiv (preprint)

Authors' code: PonDeepika/Lacune_Detection (no license)

Status: code verified, 10 files readable, 5 matches

[15155] doi:10.1113/jp288015 [paper, repository]

Out of the single-neuron straitjacket: Neurons within assemblies change selectivity and their reconfiguration underlies dynamic coding.

Journal: The Journal of physiology

Authors' code: DurstewitzLab/CADopti (GPL-3.0)

Status: code verified, 10 files readable, 4 matches

[15156] doi:10.1186/s12967-025-06671-4 [paper]

Multimodal evaluation of cerebrospinal fluid from breast cancer leptomeningeal metastases using circulating tumor cell detection, single-cell sequencing, and proteomics.

Journal: Journal of translational medicine

Status: code on request

[15157] doi:10.1186/s12967-025-06693-y [paper]

Siramesine induced cell death of glioblastoma through inactivating the STAT3-MGMT signaling pathway.

Journal: Journal of translational medicine

Status: data only

[15158] doi:10.1186/s12967-025-06767-x [paper, data]

DNA methylation remodeling in temozolomide resistant recurrent glioblastoma: comparing epigenetic dynamics in vitro and in vivo.

Journal: Journal of translational medicine

Status: data only, 3 datasets cited

[15159] doi:10.1186/s40659-025-00630-5 [paper, repository]

Pharmacological evaluation of physcion as a TRPV1 inhibitor with multimodal analgesic efficacy in experimental pain models.

Journal: Biological research

Authors' code: Zenodo 6408973 (CC-BY-4.0)

Status: code verified, 1 file readable

[15160] doi:10.1371/journal.pbio.3003217 [paper, repository]

Wakefulness can be distinguished from general anesthesia and sleep in flies using a massive library of univariate time series analyses.

Journal: PLoS biology

Authors' code: time-series-features.gitbook.io/hctsa-manual/information-about-hctsa (no license), Zenodo 15370576 (CC-BY-4.0), prototype003/fly_blind_classify (no license)

Status: code verified, 288 files readable, 14 matches

[15161] doi:10.1371/journal.pdig.0000925 [paper, repository]

Improving meningitis surveillance and diagnosis with machine learning: Insights from São Paulo.

Journal: PLOS digital health

Authors' code: Audency/Meningitis-DiagnosisML (no license)

Status: code verified, 1 file readable, 5 matches

[15162] doi:10.1371/journal.pone.0327513 [paper, data]

BN-SNN: Spiking neural networks with bistable neurons for object detection.

Journal: PloS one

Status: data only, 1 dataset cited

[15163] doi:10.1371/journal.pone.0327837 [paper, data]

Correction: Structural and functional features of medium spiny neurons in the BACHDΔN17 mouse model of Huntington's Disease.

Journal: PloS one

Status: data only, 1 dataset cited

[15164] doi:10.3389/fnhum.2025.1637174 [paper, repository]

Neural signals, machine learning, and the future of inner speech recognition.

Journal: Frontiers in human neuroscience

Authors' code: LTU-Machine-Learning/Rethinking-Methods-Inner-Speech (GPL-3.0)

Status: code verified, 42 files readable, 2 matches

[15165] doi:10.3389/fped.2025.1607213 [paper, data]

PURA syndrome-a genetic cause of a neurodevelopmental disorder-case report.

Journal: Frontiers in pediatrics

Status: data only, 1 dataset cited

[15166] doi:10.3389/ftox.2025.1636431 [paper, repository]

Arsenic toxicity in the <i>Drosophila</i> brain at single cell resolution.

Journal: Frontiers in toxicology

Authors' code: Anuragbio/As-snRNAseq (no license), vshanka23/mcpp_network_significancerespectively (no license)

Status: code verified, 2 files readable, 3 matches

[15167] doi:10.3758/s13415-025-01324-x [paper, repository]

Twin differences in the Minnesota Trust Game relate to neural mechanisms of suspiciousness.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF 3k2z9 (no license)

Status: code verified, 2 files readable, 4 matches

[15168] doi:10.7717/peerj-cs.3000 [paper, repository]

Effective classification for neonatal brain injury using EEG feature selection based on elastic net regression and improved crow search algorithm.

Journal: PeerJ. Computer science

Authors' code: supp:PMC12453842/peerj-cs-11-3000-s010.py (no license)

Status: code verified, 1 file readable, 1 match

[15169] doi:10.7717/peerj.19675 [paper, data]

Expression of the IL-18-related gene PTX3 correlates with clinicopathological features and prognosis in glioma patients.

Journal: PeerJ

Status: data only, 1 dataset cited

Wednesday, 9 July 2025 (39 papers)

[15170] doi:10.1002/glia.70057 [paper, data]

Shared Lineage, Distinct Outcomes: Yap and Taz Loss Differentially Impact Schwann and Olfactory Ensheathing Cell Development Without Disrupting GnRH-1 Migration.

Journal: Glia

Status: data only, 1 dataset cited

[15171] doi:10.1007/s00429-025-02962-0 [paper, repository]

The effects of sex and age on movie-watching functional connectivity and movie clip classification.

Journal: Brain structure & function

Authors' code: yangchengxiao/FC_movie-fMRI_HCP (no license)

Status: code verified, 11 files readable, 3 matches

[15172] doi:10.1007/s10014-025-00509-z [paper, repository]

Comprehensive molecular characterization of craniopharyngiomas using whole transcriptome and spatial transcriptomics approaches.

Journal: Brain tumor pathology

Authors' code: TrinityCTAT/ctat-mutations (BSD-3-Clause)

Status: code verified, 64 files readable

[15173] doi:10.1016/j.apsb.2025.07.012 [paper, repository]

Astrocyte FGF7/FGFR2 autocrine signaling mediates neuroinflammation and promotes MPTP-induced degeneration of dopaminergic neurons.

Journal: Acta pharmaceutica Sinica. B

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[15174] doi:10.1038/s41380-025-03102-0 [paper]

Alterations in miR-151a-3p of plasma-derived exosomes and associated multimodal neuroimaging patterns in major depressive disorder.

Journal: Molecular psychiatry

Status: code on request

[15175] doi:10.1038/s41398-025-03455-8 [paper]

Using the excitation/inhibition ratio to optimize the classification of autism and schizophrenia.

Journal: Translational psychiatry

Status: code on request

[15176] doi:10.1038/s41420-025-02604-8 [paper, data]

ELAVL1-mediated USP29 mRNA degradation activates TAK1 driving M1 microglial polarization and neural stem cell differentiation dysregulation in spinal cord injury.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[15177] doi:10.1038/s41467-025-61316-w [paper, repository]

Early developmental origins of cortical disorders modeled in human neural stem cells.

Journal: Nature communications

Authors' code: SantpereLab/CorticalDisorders (no license), Zenodo 15357305 (MIT)

Status: code verified, 44 files readable, 20 matches

[15178] doi:10.1038/s41467-025-61458-x [paper, repository]

Computational models reveal that intuitive physics underlies visual processing of soft objects.

Journal: Nature communications

Authors' code: CNCLgithub/Woven (MIT), CNCLgithub/cloth-intuitive-physics_psiturk (no license), CNCLgithub/cloth-intuitive-physics_analysis (MIT), Zenodo 15555479 (CC-BY-4.0), Zenodo 15556559 (CC-BY-4.0), Zenodo 15555453 (CC-BY-4.0)

Status: code verified, 1,172 files readable, 10 matches

[15179] doi:10.1038/s41467-025-61487-6 [paper]

Intracranial directed connectivity links subregions of the prefrontal cortex to major depression.

Journal: Nature communications

Status: code on request

[15180] doi:10.1038/s41467-025-61547-x [paper, repository]

Combining phenomics with transcriptomics reveals cell-type-specific morphological and molecular signatures of the 22q11.2 deletion.

Journal: Nature communications

Authors' code: broadinstitute/NeuroPainting (BSD-3-Clause)

Status: code verified, 51 files readable, 5 matches

[15181] doi:10.1038/s41528-025-00440-5 [paper]

Mechanically-adaptive, resveratrol-eluting neural probes for improved intracortical recording performance and stability.

Journal: Npj flexible electronics

Status: code on request

[15182] doi:10.1038/s41586-025-09228-z [paper, data]

Nutrients activate distinct patterns of small-intestinal enteric neurons.

Journal: Nature

Status: data only, 1 dataset cited

[15183] doi:10.1038/s41586-025-09246-x [paper, repository]

Coenzyme Q headgroup intermediates can ameliorate a mitochondrial encephalopathy.

Journal: Nature

Authors' code: songs05/ionlab (no license), Zenodo 15361204 (CC-BY-4.0)

Status: code verified, 1 file readable

[15184] doi:10.1038/s41586-025-09341-z [paper, repository]

Replay and representation dynamics in the hippocampus of freely flying bats.

Journal: Nature

Authors' code: kevin-qi/ripple-bat (no license)

Status: code verified, 119 files readable, 33 matches

[15185] doi:10.1038/s41591-025-03798-1 [paper, repository]

Plasma proteomics links brain and immune system aging with healthspan and longevity.

Journal: Nature medicine

Authors' code: hamiltonoh/organageUKB (no license)

Status: code verified, 3 files readable

[15186] doi:10.1038/s41597-025-05406-w [paper, repository]

Age- and Sex-Specific Cerebral Blood Flow Atlases for Healthy Brain Across the Lifespan.

Journal: Scientific data

Authors' code: figshare 28093595 (CC-BY-4.0), NIST-MNI/nist_mni_pipelines (no license), mayh314/CBF_QC (no license)

Status: code verified, 232 files readable

[15187] doi:10.1038/s41597-025-05503-w [paper, repository]

DICOM datasets for reproducible neuroimaging research across manufacturers and software versions.

Journal: Scientific data

Authors' code: Zenodo 15310934 (bsd-2-clause-netbsd), neurolabusc/dcm_validate (BSD-2-Clause)

Status: code verified, 4 files readable, 1 match

[15188] doi:10.1038/s41598-025-08362-y [paper, repository]

Deep ensemble learning with transformer models for enhanced Alzheimer's disease detection.

Journal: Scientific reports

Authors' code: Naeem-Ul/Naeem-Ul.github.io (no license)

Status: code verified, 6 files readable, 3 matches

[15189] doi:10.1038/s41598-025-09124-6 [paper, data]

Enhancing automated detection and classification of dementia in individuals with cognitive impairment using artificial intelligence techniques.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15190] doi:10.1038/s41598-025-09326-y [paper, data]

Improved salp swarm algorithm-driven deep CNN for brain tumor analysis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15191] doi:10.1038/s42003-025-08395-z [paper, repository]

Distinct neural representational geometries of numerosity in early visual and association regions across visual streams.

Journal: Communications biology

Authors' code: tlscott/make_parcels (no license), alireza-kr/numerosity_fmri-meg-cnn (CC0-1.0)

Status: code verified, 45 files readable, 10 matches

[15192] doi:10.1038/s42003-025-08467-0 [paper, repository]

Cerebellar and subcortical contributions to working memory manipulation.

Journal: Communications biology

Authors' code: ShineLabUSYD/Brainstem_DTI_Attractor_Paper (no license), ShineLabUSYD/WM_Manipulation (MIT)

Status: code verified, 26 files readable, 12 matches

[15193] doi:10.1038/s44318-025-00503-3 [paper, data]

FTO promotes weight gain via altering Kif1a splicing and axonal vesicle trafficking in AgRP neurons.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[15194] doi:10.1073/pnas.2420105122 [paper, repository]

Emergence of a temporal processing gradient from naturalistic inputs and network connectivity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: pfdominey/Narrative-Integration-Reservoir (no license)

Status: code verified, 19 files readable

[15195] doi:10.1093/biomethods/bpaf040 [paper, repository]

AllerTrans: a deep learning method for predicting the allergenicity of protein sequences.

Journal: Biology methods & protocols

Authors' code: faezesarlakifar/AllerTrans (MIT), codeocean:1381053 (no license)

Status: code verified, 26 files readable, 3 matches

[15196] doi:10.1093/braincomms/fcaf266 [paper, repository]

Beta burst-driven adaptive deep brain stimulation for gait impairment and freezing of gait in Parkinson's disease.

Journal: Brain communications

Authors' code: bronte-stewart-lab/AdaptiveDBSAnalysis (MIT)

Status: code verified, 9 files readable, 2 matches

[15197] doi:10.1093/evlett/qraf017 [paper, repository]

Repeated evolution of reduced visual investment at the onset of ecological speciation in high-altitude <i>Heliconius</i> butterflies.

Journal: Evolution letters

Authors' code: doi:10.5061/dryad.02v6wwqdg (no license), Zenodo 14750434 (MIT)

Status: code verified

[15198] doi:10.1098/rsos.250430 [paper, repository]

The domestication of the wolf larynx-testing the neural crest connection.

Journal: Royal Society open science

Authors' code: Zenodo 14967301 (MIT)

Status: code verified, 2 files readable, 4 matches

[15199] doi:10.1159/000547340 [paper, data]

Long-Lasting Suppression of Mechanical Allodynia in Mice by Intrathecal Administration of an Anti-Cell Adhesion Molecule 1 Antibody.

Journal: Medical principles and practice : international journal of the Kuwait University, Health Science Centre

Status: data only, 1 dataset cited

[15200] doi:10.1162/imag.a.76 [paper]

Proof-of-concept validation of noninvasive detection of cortical spreading depolarization with high-resolution direct current-electroencephalography with future device recommendations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[15201] doi:10.1186/s13578-025-01443-5 [paper, data]

HTT loss-of-function contributes to RNA deregulation in developing Huntington's disease neurons.

Journal: Cell & bioscience

Status: data only, 8 datasets cited

[15202] doi:10.1523/eneuro.0162-25.2025 [paper, repository]

Transformed Visual Working Memory Representations in Human Occipitotemporal and Posterior Parietal Cortices.

Journal: eNeuro

Authors' code: OSF 8rbkh (no license)

Status: code verified, 24 files readable, 2 matches

[15203] doi:10.26508/lsa.202503323 [paper, data]

Loss of PLA2G4E compromises synaptic structure and cognitive outcomes in mice.

Journal: Life science alliance

Status: data only, 1 dataset cited

[15204] doi:10.3390/bioengineering12070747 [paper, data]

Hybrid Attention-Enhanced Xception and Dynamic Chaotic Whale Optimization for Brain Tumor Diagnosis.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 2 datasets cited

[15205] doi:10.3390/biomimetics10070452 [paper, data]

Multi-Class Classification Methods for EEG Signals of Lower-Limb Rehabilitation Movements.

Journal: Biomimetics (Basel, Switzerland)

Status: data only, 1 dataset cited

[15206] doi:10.7554/elife.100947 [paper, repository]

Molecular characterization of gustatory second-order neurons reveals integrative mechanisms of gustatory and metabolic information.

Journal: eLife

Authors' code: sanchez-alcaniz_lab/molla-albaladejo (no license)

Status: code verified, 2 files readable

[15207] doi:10.7554/elife.105153 [paper, data]

CRISPR-edited DPSCs constitutively expressing BDNF enhance dentin regeneration in injured teeth.

Journal: eLife

Status: data only, 1 dataset cited

[15208] doi:10.7554/elife.99368 [paper, data]

A temporally restricted function of the dopamine receptor Dop1R2 during memory formation.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 8 July 2025 (45 papers, 24 on this page)

[15209] doi:10.1002/advs.202502047 [paper, repository]

Distributed Temporal Coding of Visual Memory Categories in Human Hippocampal Neurons Revealed by an Interpretable Decoding Model.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: neural-modeling-and-interface-lab/Human_Memory_Decoding (no license)

Status: code verified, 28 files readable, 2 matches

[15210] doi:10.1002/advs.202503768 [paper, data]

Multi-Region Brain Organoids Integrating Cerebral, Mid-Hindbrain, and Endothelial Systems.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[15211] doi:10.1002/advs.202504175 [paper, data]

Aberrant Mitochondrial Metabolism in Alzheimer's Disease Links Energy Stress with Ferroptosis.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[15212] doi:10.1002/mrm.30629 [paper, repository]

Fast MR signal simulations of microvascular and diffusion contributions using histogram-based approximation and recurrent neural networks.

Journal: Magnetic resonance in medicine

Authors' code: ThomasCoudert/MR-WAVES-public (no license)

Status: code verified, 23 files readable, 2 matches

[15213] doi:10.1007/s00432-025-06254-2 [paper, data]

Expression profile and prognostic relevance of immune infiltration-related RBMS1 in gliomas: a multidimensional integrative analysis.

Journal: Journal of cancer research and clinical oncology

Status: data only, 1 dataset cited

[15214] doi:10.1007/s12565-025-00859-w [paper, repository]

ht-MASH: a high-throughput, cost-effective, and robust protocol for microscopic 3D imaging of human angio- and cytoarchitecture in large human brain samples.

Journal: Anatomical science international

Authors' code: ClearAnatomics/ClearMap (GPL-3.0)

Status: code verified, 647 files readable, 2 matches

[15215] doi:10.1016/j.brs.2025.07.003 [paper]

All-optical mapping reveals distributed suppression of cortical sensory responses after optogenetic silencing.

Journal: Brain stimulation

Status: code on request

[15216] doi:10.1016/j.celrep.2025.115952 [paper, data]

Testosterone and 17β-estradiol regulate hippocampal area CA3 sharp waves in male and female rats.

Journal: Cell reports

Status: code on request, 1 dataset cited

[15217] doi:10.1016/j.dib.2025.111855 [paper, data]

EEG data of museum visitors experiencing visual and audiovisual simulations of Edzná, an archaeological site in Mexico.

Journal: Data in brief

Status: data only, 3 datasets cited

[15218] doi:10.1016/j.ynirp.2025.100275 [paper, repository]

Pre-CBT resting-state connectivity and white matter integrity in OCD remission: A multimodal MRI study.

Journal: Neuroimage. Reports

Authors' code: ENIGMA-git/ENIGMA-FreeSurfer-protocol (no license)

Status: code verified, 226 files readable, 2 matches

[15219] doi:10.1038/s41467-025-59931-8 [paper, repository]

Neural signatures of emotional intent and inference align during social consensus.

Journal: Nature communications

Authors' code: OSF cs3km (no license), canlab/CanlabCore (GPL-2.0)

Status: code verified, 2,016 files readable, 19 matches

[15220] doi:10.1038/s41467-025-60466-1 [paper, repository]

Towards fair decentralized benchmarking of healthcare AI algorithms with the Federated Tumor Segmentation (FeTS) challenge.

Journal: Nature communications

Authors' code: mlcommons/medperf (Apache-2.0), FETS-AI/Front-End (other), FETS-AI/Challenge (no license), Zenodo 4633206 (other-open), Zenodo 15102249 (CC-BY-4.0), fets-ai/labelfusion (Apache-2.0)

Status: code verified, 1,728 files readable, 9 matches

[15221] doi:10.1038/s41467-025-61614-3 [paper, repository]

Chronic cerebral hypoperfusion induces venous dysfunction via EPAS1 regulation in mice.

Journal: Nature communications

Authors' code: aravind245/microglial_ramification_pipeline (GPL-3.0), aravind245/enos_signal_intensity_measurement (MIT), Zenodo 15493407 (GPL-3.0), sichen-lin/microglial_ramification_pipeline (GPL-3.0)

Status: code verified, 30 files readable, 7 matches

[15222] doi:10.1038/s41467-025-61770-6 [paper, data]

A mechanosensitive ion channel controls touch-triggered stigma movement through manipulation of calcium signature in Torenia.

Journal: Nature communications

Status: data only, 1 dataset cited

[15223] doi:10.1038/s41593-025-01999-y [paper, repository]

Temporal control of progenitor competence shapes maturation in GABAergic neuron development in mice.

Journal: Nature neuroscience

Authors' code: mayer-lab/bright-et-al-2025 (no license), Zenodo 15195253 (CC-BY-4.0), Zenodo 15195252 (CC-BY-4.0)

Status: code verified, 72 files readable, 28 matches

[15224] doi:10.1038/s41593-025-02002-4 [paper, repository]

Intersectin and endophilin condensates prime synaptic vesicles for release site replenishment.

Journal: Nature neuroscience

Authors' code: imotolab-neuroem/sted_image_analysis_package_public_v1.4 (no license), shigekiwatanabe/SynapsEM (no license)

Status: code verified, 98 files readable, 2 matches

[15225] doi:10.1038/s41598-025-00012-7 [paper]

Multiregional representations of intertemporal decision making in human single neurons.

Journal: Scientific reports

Status: code on request

[15226] doi:10.1038/s41598-025-00824-7 [paper, data]

Motor imagery EEG signal classification using novel deep learning algorithm.

Journal: Scientific reports

Status: data only, 2 datasets cited

[15227] doi:10.1038/s41598-025-02010-1 [paper]

CLN3 disease disrupts very early postnatal hippocampal maturation.

Journal: Scientific reports

Status: code on request

[15228] doi:10.1038/s41598-025-09154-0 [paper, repository]

Predictive models of influenza A virus lethal disease yield insights from ferret respiratory tract and brain tissues.

Journal: Scientific reports

Authors' code: Troy-Kieran/machine-learning-influenza-lethality-ferret (Apache)

Status: code verified, 3 files readable, 3 matches

[15229] doi:10.1038/s41598-025-09756-8 [paper, data]

Magnetic iron-oxide nanoparticles in the brain connected to alcohol-associated liver disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15230] doi:10.1038/s41598-025-10408-0 [paper, repository]

Graph-based vision transformer with sparsity for training on small datasets from scratch.

Journal: Scientific reports

Authors' code: cvcoding/GvT (Apache)

Status: code verified, 14 files readable, 1 match

[15231] doi:10.1038/s42003-025-08437-6 [paper, repository]

PP2Acα regulates sleep amount and sleep homeostasis in mice.

Journal: Communications biology

Authors' code: Zenodo 7102778 (CC-BY-4.0)

Status: code verified

[15232] doi:10.1038/s44318-025-00498-x [paper]

Optochemical profiling of NMDAR molecular diversity at synaptic and extrasynaptic sites.

Journal: The EMBO journal

Status: data only

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