Every paper, by date: page 69

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 69 of 200: 8 July 2025 to 1 July 2025.

Tuesday, 8 July 2025 (45 papers, 21 on this page)

[15233] doi:10.1063/5.0261497 [paper, data]

Frequency and duration of sensory flicker control transcriptional profiles in 5xFAD mice.

Journal: APL bioengineering

Status: data only, 1 dataset cited

[15234] doi:10.1073/pnas.2420287122 [paper, repository]

Multiarea processing in body patches of the primate inferotemporal cortex implements inverse graphics.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: CNCLgithub/Body-inference-network-paper (no license), CNCLgithub/SPIN (BSD-3-Clause)

Status: code verified, 7 files readable

[15235] doi:10.1073/pnas.2500004122 [paper, repository]

OMT and tensor SVD-based deep learning model for segmentation and predicting genetic markers of glioma: A multicenter study.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.6084/m9.figshare.c.5904905.v1 (no license), happywind-boy/OMT-APC (no license)

Status: code verified, 387 files readable, 1 match

[15236] doi:10.1073/pnas.2504103122 [paper, data]

<i>Piezo2</i>+ mechanosensory neurons orchestrate postnatal development through mechano-chemo-transduction of PDGFA signaling.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[15237] doi:10.1093/pnasnexus/pgaf213 [paper, data]

Noncanonical sustained actions of propofol reverse surgery-induced microglial activation and cognitive impairment in aged mice.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[15238] doi:10.1172/jci.insight.187684 [paper, data]

Glycoprotein NMB mediates bidirectional GSC-TAM interactions to promote tumor progression.

Journal: JCI insight

Status: data only, 1 dataset cited

[15239] doi:10.1177/0271678x251355049 [paper, repository]

2-deoxy-D-glucose chemical exchange-sensitive spin-lock MRI of cerebral glucose metabolism after transient focal stroke in the rat.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: Zenodo 14526091 (CC-BY-4.0)

Status: code verified, 1 file readable

[15240] doi:10.1177/19417381251350688 [paper, repository]

Movement Rate and Brain-Muscle Coupling in Male Footballers With and Without Hamstring Injury History.

Journal: Sports health

Authors' code: Zenodo 7704280 (no license)

Status: code verified, 53 files readable, 1 match

[15241] doi:10.1186/s11689-025-09630-8 [paper, data]

Charting the future: current and future directions in translational research for individuals with Down syndrome.

Journal: Journal of neurodevelopmental disorders

Status: data only, 2 datasets cited

[15242] doi:10.1186/s12888-025-07000-1 [paper, data]

A randomised controlled trial of amygdala fMRI-neurofeedback versus sham-feedback in borderline-personality disorder - systematic literature review and introduction to the BrainSTEADy trial.

Journal: BMC psychiatry

Status: data only, 1 dataset cited

[15243] doi:10.1186/s12915-025-02289-6 [paper, data]

Serial dependence in face-gender classification revealed in low-beta frequency EEG.

Journal: BMC biology

Status: data only, 1 dataset cited

[15244] doi:10.1371/journal.pgen.1011752 [paper, repository]

The foraging gene coordinates brain and heart networks to modulate socially cued interval timing in Drosophila.

Journal: PLoS genetics

Authors' code: vib-singlecell-nf (no license)

Status: code verified

[15245] doi:10.1371/journal.pone.0327121 [paper, data]

Utilizing statistical analysis for motion imagination classification in brain-computer interface systems.

Journal: PloS one

Status: data only, 2 datasets cited

[15246] doi:10.1371/journal.pone.0327793 [paper, repository]

Quantifying hot topic dynamics in scientific literature: An information-theoretical approach.

Journal: PloS one

Authors' code: ArtemEsper/TopicGeometry (MIT)

Status: code verified, 9 files readable, 2 matches

[15247] doi:10.3389/fnagi.2025.1593868 [paper, data]

Efficiency of structural brain networks mediates age-associated differences in executive functioning in older adults.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[15248] doi:10.3389/fninf.2025.1563893 [paper, repository]

Decoding event-related potentials: single-dose energy dietary supplement acts on earlier brain processes than we thought.

Journal: Frontiers in neuroinformatics

Authors' code: kariniak/Decoding-the-effect-of-an-energy-dietary-supplement-on-visual-P3_public (no license)

Status: code verified, 12 files readable, 1 match

[15249] doi:10.3389/fnins.2025.1620181 [paper]

Targeting oxidized phosphatidylcholines in SOD1-associated ALS: therapeutic potential of PC-OxPL-VecTab<sup>®</sup>.

Journal: Frontiers in neuroscience

Status: data only

[15250] doi:10.3389/fnmol.2025.1602201 [paper]

Peripheral gene dysregulation in Negr1-deficient mice: insights into possible links with affective behavior.

Journal: Frontiers in molecular neuroscience

Status: data only

[15251] doi:10.3390/antiox14070837 [paper, data]

Agmatine Mitigates Diabetes-Related Memory Loss in Female Mice by Targeting I<sub>2</sub>/I<sub>3</sub> Imidazoline Receptors and Enhancing Brain Antioxidant Defenses.

Journal: Antioxidants (Basel, Switzerland)

Status: data only, 1 dataset cited

[15252] doi:10.3390/biomedicines13071674 [paper, repository]

Experimentally Constrained Mechanistic and Data-Driven Models for Simulating NMDA Receptor Dynamics.

Journal: Biomedicines

Authors' code: duytanph/exp_constrained_NMDAR_models (no license)

Status: code verified, 6 files readable, 2 matches

[15253] doi:10.7554/elife.85300 [paper, repository]

Homophilic wiring principles underpin neuronal network topology in vitro.

Journal: eLife

Authors' code: DanAkarca/MEA_generative_models (MIT)

Status: code verified, 10 files readable, 6 matches

Monday, 7 July 2025 (42 papers)

[15254] doi:10.1007/s00422-025-01017-1 [paper, repository]

Incorporating buccal mass planar mechanics and anatomical features improves neuromechanical modeling of Aplysia feeding behavior.

Journal: Biological cybernetics

Authors' code: CMU-BORG/Aplysia_Feeding_Neuromechanical_Model_Bennington_et_al (no license), Zenodo 15699753 (CC-BY-4.0)

Status: code verified, 37 files readable, 19 matches

[15255] doi:10.1007/s10565-025-10065-z [paper, data]

Single-nucleus rna sequencing identifies universal camk1d upregulation and dysregulated c-ltmr subtypes as key drivers of paclitaxel-induced neuropathy.

Journal: Cell biology and toxicology

Status: data only, 1 dataset cited

[15256] doi:10.1016/j.isci.2025.112922 [paper, repository]

Delta-band audience brain synchrony tracks engagement with live and recorded dance.

Journal: iScience

Authors' code: rdr.ucl.ac.uk/articles/dataset (no license), OSF uz573 (no license), parralab.org/resources.html (no license), OSF 69gfe (no license), OSF b62d7 (no license)

Status: code verified

[15257] doi:10.1016/j.isci.2025.113075 [paper, repository]

Connectome-based predictive modeling of handwriting and reading using task-evoked and resting-state functional connectivity.

Journal: iScience

Authors' code: Junjun-Li2020/PsychCAS-Yang-Lab-CPM (LGPL-2.1)

Status: code verified, 5 files readable

[15258] doi:10.1016/j.jot.2025.06.014 [paper]

Bone marrow-derived myeloid cells drive neuroinflammation in Alzheimer's disease: Insights from the FAD<sup>4T</sup> mouse model.

Journal: Journal of orthopaedic translation

Status: data only

[15259] doi:10.1017/s0033291725001151 [paper, repository]

Early predictors of late childhood behavioural outcomes following very preterm birth.

Journal: Psychological medicine

Authors' code: RobinZSun/dCVnet_BIPP (no license)

Status: code verified, 2 files readable, 4 matches

[15260] doi:10.1038/s41398-025-03443-y [paper]

Genetic liability to major psychiatric disorders contributes to multi-faceted quality of life outcomes in children and adults.

Journal: Translational psychiatry

Status: code on request

[15261] doi:10.1038/s41467-025-60968-y [paper, repository]

Striatal astrocytes modulate behavioral flexibility and whole-body metabolism in mice.

Journal: Nature communications

Authors' code: talialerner/Photometry-Analysis-Shared (no license), dl9999/C-Screen-raw (no license)

Status: code verified, 5 files readable

[15262] doi:10.1038/s41467-025-61313-z [paper, repository]

Neurogenomic and behavioral principles shape freezing dynamics and synergistic performance in Drosophila melanogaster.

Journal: Nature communications

Authors' code: Zenodo 15630079 (MIT), daikisato12/sato2025_fruitfly_collectives (MIT)

Status: code verified, 116 files readable, 16 matches

[15263] doi:10.1038/s41551-025-01449-x [paper, repository]

Holographic transcranial ultrasound neuromodulation enhances stimulation efficacy by cooperatively recruiting distributed brain circuits.

Journal: Nature biomedical engineering

Authors' code: Zenodo 15225873 (GPL-2.0), Zenodo 15232784 (CC-BY-4.0), razanskylab/htus (GPL-2.0), tjjlemaire/fusnetwork (no license)

Status: code verified, 48 files readable, 10 matches

[15264] doi:10.1038/s41598-025-04932-2 [paper]

Contrast subgraphs catch patterns of altered functional connectivity in autism spectrum disorder.

Journal: Scientific reports

Status: code on request

[15265] doi:10.1038/s41598-025-07754-4 [paper, data]

Neural responses to perceptual and sexual ambiguity in facial images: an ERP and time-frequency analysis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15266] doi:10.1038/s41598-025-09539-1 [paper, data]

ResSAXU-Net for multimodal brain tumor segmentation from brain MRI.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15267] doi:10.1038/s42003-025-08267-6 [paper, repository]

Brainbuilder: a software pipeline for 3D reconstruction of cortical maps from multi-modal 2D data sets.

Journal: Communications biology

Authors' code: tfunck/brainbuilder (MIT), figshare 28934441 (CC-BY-4.0)

Status: code verified, 45 files readable, 3 matches

[15268] doi:10.1038/s42003-025-08447-4 [paper, repository]

Spatiotemporal dynamics of sleep spindles form spiral waves that predict overnight memory consolidation and age-related memory decline.

Journal: Communications biology

Authors' code: BrainDynamicsUSYD (no license)

Status: code verified

[15269] doi:10.1039/d4mo00261j [paper, repository]

Lipidomics reveals cell specific changes during pluripotent differentiation to neural and mesodermal lineages.

Journal: Molecular omics

Authors' code: BakerLabNCSU/SCOPE (no license)

Status: code verified, 8 files readable, 3 matches

[15270] doi:10.1073/pnas.2419733122 [paper, data]

Adaptive arousal regulation: Pharmacologically shifting the peak of the Yerkes-Dodson curve by catecholaminergic enhancement of arousal.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[15271] doi:10.1073/pnas.2421886122 [paper, data]

Autophagic stress activates distinct compensatory secretory pathways in neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 3 datasets cited

[15272] doi:10.1073/pnas.2421905122 [paper, repository]

Hippocampal blood oxygenation predicts choices about everyday consumer experiences: A deep-learning approach.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF pkbv2 (no license)

Status: code verified

[15273] doi:10.1093/jscr/rjaf482 [paper]

AI-assisted prostheses manufacturing for cranioplasties in low-income countries. A case report and technique description.

Journal: Journal of surgical case reports

Status: code on request

[15274] doi:10.1101/2025.07.03.663006 [paper, repository]

Phaeochromocytomas and paragangliomas harbour tumour-initiating SOX2+ stem cells

Journal: bioRxiv (preprint)

Authors' code: Andoniadou-Lab/SOX2_PPGL (MIT)

Status: code verified, 5 files readable, 10 matches

[15275] doi:10.1111/epi.18532 [paper, repository]

Medial septum parvalbumin-expressing inhibitory neurons are impaired in a mouse model of Dravet syndrome.

Journal: Epilepsia

Authors' code: mattis-laboratory/Slice-Physiology-Automated-Analysis (no license)

Status: code verified, 9 files readable, 4 matches

[15276] doi:10.1111/epi.18540 [paper, repository]

Distinct impacts of sodium channel blockers on the strength-duration properties of human motor cortex neurons.

Journal: Epilepsia

Authors' code: OSF d6vf2 (no license)

Status: code verified, 10 files readable, 2 matches

[15277] doi:10.1128/spectrum.00178-25 [paper]

<i>Clostridium butyricum</i> enhances cognitive function in APP/PS1 mice by modulating neuropathology and regulating acetic acid levels in the gut microbiota.

Journal: Microbiology spectrum

Status: data only

[15278] doi:10.1162/imag.a.65 [paper, repository]

Altered brain state dynamics between preterm and term-born infants.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: srd49/dbi (no license)

Status: code verified, 10 files readable, 2 matches

[15279] doi:10.1162/imag.a.67 [paper]

T<sub>2</sub> contrast variation in human brain at 7 T and its potential contributors.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[15280] doi:10.1162/imag.a.74 [paper, repository]

The impact of inherently aversive contexts on visuocortical processing of generalized threat.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF jhvm4 (no license)

Status: code verified, 1 file readable, 1 match

[15281] doi:10.1186/s12974-025-03497-1 [paper, data]

MAVS signaling of long-lived brain-resident myeloid cells is needed during viral encephalitis to adjust the transcriptome of CNS infiltrating CD8⁺ T cells.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[15282] doi:10.1186/s12984-025-01685-x [paper]

Electrophysiological-based automatic subgroups diagnosis of patients with chronic dysimmune polyneuropathies.

Journal: Journal of neuroengineering and rehabilitation

Status: code on request

[15283] doi:10.1371/journal.pbio.3003228 [paper, repository]

A comparison of viral strategies and model systems to target norepinephrine neurons in the locus coeruleus reveals high variability in transgene expression patterns.

Journal: PLoS biology

Authors' code: SynapticWiringLab/Wissing_and_Eschholz_LC-transduction (CC0-1.0), Zenodo 15474852 (CC0-1.0)

Status: code verified, 42 files readable, 7 matches

[15284] doi:10.1371/journal.pbio.3003234 [paper, repository]

Reward expectation yields distinct effects on sensory processing and decision making in the human brain.

Journal: PLoS biology

Authors' code: figshare 25966015 (CC-BY-4.0)

Status: code verified, 7 files readable

[15285] doi:10.1371/journal.pbio.3003267 [paper, repository]

The human medial temporal lobe represents memory items in their ordinal position in both declarative and motor memory domains.

Journal: PLoS biology

Authors' code: Zenodo 15642711 (CC-BY-4.0)

Status: code verified, 36 files readable, 5 matches

[15286] doi:10.1371/journal.pbio.3003278 [paper, repository]

Layers of the monkey visual cortex are selectively modulated during electrical stimulation.

Journal: PLoS biology

Authors' code: Zenodo 15723993 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[15287] doi:10.1371/journal.pcbi.1012733 [paper, repository]

Jaxkineticmodel: Neural ordinary differential equations inspired parameterization of kinetic models.

Journal: PLoS computational biology

Authors' code: AbeelLab/jaxkineticmodel (Apache-2.0), data.4tu.nl/datasets/3662eca5-7077-4ca3-8f66-d051e2c79cbe (no license)

Status: code verified, 61 files readable, 7 matches

[15288] doi:10.1371/journal.pcbi.1013267 [paper, repository]

Selective inhibition in CA3: A mechanism for stable pattern completion through heterosynaptic plasticity.

Journal: PLoS computational biology

Authors' code: kgt1220/Hippocampus_SNN (no license)

Status: code verified, 36 files readable, 1 match

[15289] doi:10.1371/journal.pone.0326765 [paper, repository]

Quantitative MRI relaxometry in brain tumor needle biopsies: Multimodal comparison with tissue fluorescence, radiology, and neuropathology.

Journal: PloS one

Authors' code: Eli-Klint/qmri-multimodal-processing (no license)

Status: empty repository, 1 file readable

[15290] doi:10.21203/rs.3.rs-6917781/v1 [paper]

Mannose Receptor C type 2 influences autoimmune neuroinflammation and blood-brain barrier integrity

Journal: Research Square (preprint)

Status: code on request

[15291] doi:10.3389/fcvm.2025.1569423 [paper, data]

Biological heart and brain ageing in subjects with cardiovascular diseases.

Journal: Frontiers in cardiovascular medicine

Status: data only, 1 dataset cited

[15292] doi:10.3389/fnetp.2025.1565802 [paper, repository]

Resolving inconsistent effects of tDCS on learning using a homeostatic structural plasticity model.

Journal: Frontiers in network physiology

Authors' code: ErbB4/tDCS-and-learning (no license)

Status: code verified, 31 files readable, 1 match

[15293] doi:10.3389/fnins.2025.1622950 [paper, data]

Self-supervised learning analysis of multi-FISH labeled cell-type map in thick brain slices.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[15294] doi:10.3390/mps8040074 [paper, repository]

A Framework for Corticomuscle Control Studies Using a Serious Gaming Approach.

Journal: Methods and protocols

Authors' code: Zenodo 11245416 (CC-BY-4.0)

Status: code verified

[15295] doi:10.3390/vision9030053 [paper, data]

Stronger Short-Term Memory, Larger Hippocampi and Area V1 in People with High VVIQ Scores.

Journal: Vision (Basel, Switzerland)

Status: data only, 1 dataset cited

Sunday, 6 July 2025 (5 papers)

[15296] doi:10.1038/s41467-025-61575-7 [paper, repository]

Learning interpretable network dynamics via universal neural symbolic regression.

Journal: Nature communications

Authors' code: codeocean:3947449 (no license)

Status: code found, still to be checked

[15297] doi:10.1038/s41598-025-08632-9 [paper]

Central nervous system and systemic inflammatory networks associated with acute neurological outcomes in COVID-19.

Journal: Scientific reports

Status: data only

[15298] doi:10.1186/s13024-025-00869-2 [paper, data]

Methylome analysis of FTLD patients with TDP-43 pathology identifies epigenetic signatures specific to pathological subtypes.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[15299] doi:10.1186/s13059-025-03677-5 [paper, repository]

Systematic assessment of microenvironment-dependent transcriptional patterns and intercellular communication.

Journal: Genome biology

Authors' code: sbnb-irb/cell-cell-communication (MIT), Zenodo 15746152 (MIT), epalo/cell-cell-communication (MIT)

Status: code verified, 26 files readable, 6 matches

[15300] doi:10.3390/biomedicines13071649 [paper, data]

Inhibitory Effects of 3-(4-Hydroxy-3-methoxyphenyl) Propionic Acid on Amyloid β-Peptide Aggregation In Vitro.

Journal: Biomedicines

Status: data only, 1 dataset cited

Saturday, 5 July 2025 (18 papers)

[15301] doi:10.1016/j.dcn.2025.101593 [paper, repository]

Large-scale examination of hot and cool executive function in children born preterm.

Journal: Developmental cognitive neuroscience

Authors' code: OSF 539nk (no license)

Status: code verified, 1 file readable, 5 matches

[15302] doi:10.1016/j.fmre.2025.07.001 [paper, repository]

Deciphering molecular inputs to CRH neurons from POMC neurons.

Journal: Fundamental research

Authors' code: figshare 24086037 (CC-BY-4.0)

Status: code verified, 1 file readable, 4 matches

[15303] doi:10.1016/j.isci.2025.113048 [paper]

HHV-6 and EBV reactivation in relapsing remitting multiple sclerosis: Disability, progression, and inflammation links.

Journal: iScience

Status: code on request

[15304] doi:10.1016/j.isci.2025.113062 [paper, data]

FMRP-dependent translational control negatively regulates adapter protein complex 2-mediated endocytosis.

Journal: iScience

Status: code on request, 1 dataset cited

[15305] doi:10.1016/j.isci.2025.113070 [paper, repository]

lncRNA ADEPTR loss-of-function elicits sex-specific behavioral and spine deficits.

Journal: iScience

Authors' code: ryoheiyasuda/SpineDetector (no license)

Status: code verified, 3 files readable

[15306] doi:10.1016/j.nbd.2025.107023 [paper]

Inhibition of PTPRS function does not affect the survival or regeneration of dopaminergic neurons but alters synaptic function in the nigrostriatal pathway.

Journal: Neurobiology of disease

Status: code on request

[15307] doi:10.1038/s41398-025-03440-1 [paper, data]

Neurobiological correlates of schizophrenia-specific and highly pleiotropic genetic risk scores for neuropsychiatric disorders.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[15308] doi:10.1038/s41398-025-03460-x [paper, repository]

Prediction of generalized anxiety disorder treatment outcomes with neurobehavioral responses to approach-avoidance conflict: a randomized clinical trial.

Journal: Translational psychiatry

Authors' code: OSF 8cfwk (no license)

Status: code verified, 1 file readable

[15309] doi:10.1038/s41467-025-61471-0 [paper, repository]

Genetic risk-dependent brain markers of resilience to childhood Trauma.

Journal: Nature communications

Authors' code: hanluyt/modulation_emotionalBrain (no license)

Status: code verified, 10 files readable, 6 matches

[15310] doi:10.1038/s41467-025-61679-0 [paper, repository]

The Mn-motif protein MAP6d1 assembles ciliary doublet microtubules.

Journal: Nature communications

Authors' code: EricDenarier/MAPd1_MT_Doublets_2025 (no license)

Status: empty repository, 1 file readable

[15311] doi:10.1038/s41598-025-03672-7 [paper, data]

Design of a novel multiepitope vaccine against glioblastoma by in silico approaches.

Journal: Scientific reports

Status: data only, 4 datasets cited

[15312] doi:10.1111/epi.18531 [paper]

Functional network dynamics in photosensitive epilepsy depend on stimulation frequency and photoparoxysmal electroencephalographic response.

Journal: Epilepsia

Status: code on request

[15313] doi:10.1186/s12984-025-01682-0 [paper, repository]

Neuroimaging and biological markers of different paretic hand outcomes after stroke.

Journal: Journal of neuroengineering and rehabilitation

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 2 matches

[15314] doi:10.1186/s40478-025-02047-3 [paper, data]

Spatial transcriptome analysis of myenteric plexus and intestinal epithelium of colon in patients with Parkinson's disease.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[15315] doi:10.1186/s40478-025-02062-4 [paper, repository]

Early transcriptional responses reveal cell type-specific vulnerability and neuroprotective mechanisms in the neonatal ischemic hippocampus.

Journal: Acta neuropathologica communications

Authors' code: Erik-D-Nelson/ARG_HPC_snRNAseq (no license)

Status: code verified, 19 files readable, 5 matches

[15316] doi:10.1186/s40478-025-02071-3 [paper, data]

DNA methylation as a contributor to dysregulation of STX6 and other frontotemporal Lobar degeneration genetic risk-associated loci.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[15317] doi:10.21769/bioprotoc.5371 [paper, repository]

Two-photon (2P) Microscopy to Study Ca<sup>2+</sup> Signaling in Astrocytes From Acute Brain Slices.

Journal: Bio-protocol

Authors' code: ladymariot/AstroResp (MIT)

Status: code verified, 5 files readable

[15318] doi:10.4103/nrr.nrr-d-24-01400 [paper, data]

Delayed microglial depletion protects against white matter injury following neonatal cerebral hemorrhage in mice.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

Friday, 4 July 2025 (25 papers)

[15319] doi:10.1002/jcv2.70023 [paper]

Genetic and environmental influences on sleep quality, ability to settle, and crying duration in 2- and 5-month-old infants: A longitudinal twin study.

Journal: JCPP advances

Status: code on request

[15320] doi:10.1007/s11548-025-03425-x [paper, repository]

eNCApsulate: neural cellular automata for precision diagnosis on capsule endoscopes.

Journal: International journal of computer assisted radiology and surgery

Authors' code: MECLabTUDA/eNCApsulate (MIT)

Status: empty repository, 2 files readable

[15321] doi:10.1016/j.bandl.2025.105610 [paper, data]

Neural associations between fingerspelling, print, and signs: An ERP priming study with deaf readers.

Journal: Brain and language

Status: data only, 1 dataset cited

[15322] doi:10.1016/j.dcn.2025.101594 [paper, repository]

Developmental changes in dopamine-related neurophysiology and associations with adolescent substance use and incentive-boosted cognitive control.

Journal: Developmental cognitive neuroscience

Authors' code: Flanneryg3/TissueIron_ProjectCode (no license), identifiers.org/neurovault.collection:19012 (no license)

Status: code verified, 20 files readable, 11 matches

[15323] doi:10.1016/j.mex.2025.103482 [paper, repository]

ENIGMA's advanced guide for parcellation error identification (EAGLE-I): An implementation in the context of brain lesions.

Journal: MethodsX

Authors' code: enigma-git (no license), raamana/visualqc (Apache-2.0)

Status: code verified, 30 files readable

[15324] doi:10.1017/s0033291725100962 [paper]

A common symptom geometry of mood improvement under sertraline and placebo associated with distinct neural patterns.

Journal: Psychological medicine

Status: code on request

[15325] doi:10.1038/s41467-025-61180-8 [paper, data]

Nicotine engages a VTA-NAc feedback loop to inhibit amygdala-projecting dopamine neurons and induce anxiety-like behaviors.

Journal: Nature communications

Status: data only, 1 dataset cited

[15326] doi:10.1038/s41467-025-61292-1 [paper, repository]

Utility of synthetic musculoskeletal gaits for generalizable healthcare applications.

Journal: Nature communications

Authors' code: namjohn10/GenerativeGaitNet (Apache-2.0), alexandervnikitin/tsgm (Apache-2.0), hfawaz/dl-4-tsc (GPL-3.0), zhihanyue/ts2vec (MIT)

Status: code verified, 234 files readable, 4 matches

[15327] doi:10.1038/s41467-025-61303-1 [paper, repository]

A multi-tiered mechanical mechanism shapes the early neural plate.

Journal: Nature communications

Authors' code: Zenodo 15458516 (CC-BY-4.0), Zenodo 8171784 (MIT)

Status: code verified, 67 files readable, 3 matches

[15328] doi:10.1038/s41467-025-61399-5 [paper, repository]

Self-supervised predictive learning accounts for cortical layer-specificity.

Journal: Nature communications

Authors' code: neuralml/neoSSL (MIT), Zenodo 15359568 (MIT)

Status: code verified, 66 files readable, 1 match

[15329] doi:10.1038/s41593-025-01991-6 [paper, repository]

Human thalamocortical structural connectivity develops in line with a hierarchical axis of cortical plasticity.

Journal: Nature neuroscience

Authors' code: Zenodo 5045684 (no license), hub.docker.com/r/dsistudio (no license), nimare.readthedocs.io (no license), frantisekvasa/rotate_parcellation (MIT), pennlinc.github.io/thalamocortical_development (no license)

Status: code verified, 7 files readable

[15330] doi:10.1038/s41597-025-05349-2 [paper, repository]

A Multi-Context Emotional EEG Dataset for Cross-Context Emotion Decoding.

Journal: Scientific data

Authors' code: ncclab-sustech/EmoEEG-MC (MIT)

Status: code verified, 36 files readable, 4 matches

[15331] doi:10.1038/s41598-025-07568-4 [paper, repository]

A bioelectric router for adaptive isochronous neurostimulation enables multipolar bioelectric stimulation from a single source.

Journal: Scientific reports

Authors' code: denmanlab/BRAINSboard (no license)

Status: empty repository, 1 file readable

[15332] doi:10.1038/s41598-025-08028-9 [paper, repository]

Neural network assisted annotation and analysis tool to study in-vivo foveolar cone photoreceptor topography.

Journal: Scientific reports

Authors' code: ukb-aoslo/ConeMapper (GPL-3.0), nl.mathworks.com/matlabcentral/fileexchange (no license)

Status: code verified, 42 files readable, 2 matches

[15333] doi:10.1038/s42003-025-08429-6 [paper, data]

Visuoaffective day residue in hypnagogia involves sequential bihemispheric interactions between cortical, subcortical, and cerebellar structures.

Journal: Communications biology

Status: data only, 1 dataset cited

[15334] doi:10.1038/s42003-025-08445-6 [paper, data]

Bidirectional information flow in cooperative learning reflects emergent leadership.

Journal: Communications biology

Status: code on request, 1 dataset cited

[15335] doi:10.1038/s42003-025-08453-6 [paper, repository]

3BTRON: A Blood-Brain Barrier Recognition Network.

Journal: Communications biology

Authors' code: tmi-lab/3BTRON (CC0-1.0), Zenodo 15683557 (CC-BY-4.0)

Status: code verified, 19 files readable, 1 match

[15336] doi:10.1093/braincomms/fcaf243 [paper, repository]

Deep learning to predict progression independent of relapse activity at a first demyelinating event.

Journal: Brain communications

Authors' code: cemcat/Predictive_Models_Cemcat (no license)

Status: dead link

[15337] doi:10.1126/sciadv.adt8765 [paper, repository]

H3K79 methylation and H3K36 trimethylation synergistically regulate gene expression in pluripotent stem cells.

Journal: Science advances

Authors' code: ENCODE-DCC/chip-seq-pipeline2 (MIT)

Status: code verified, 57 files readable, 2 matches

[15338] doi:10.1159/000547257 [paper, data]

Mesenchymal Stromal Cells from Dental Tissues Demonstrate Neuronal Potential Pre- and Post-Induction.

Journal: Cells, tissues, organs

Status: data only, 1 dataset cited

[15339] doi:10.1186/s12984-025-01686-w [paper, data]

A PRISMA systematic review through time on predictive musculoskeletal simulations.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

[15340] doi:10.1186/s40478-025-02063-3 [paper, data]

Brain macrophages and pial fibroblasts promote inflammation in a hypomyelination model.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[15341] doi:10.3390/s25134160 [paper, repository]

Using Wearable MEG to Study the Neural Control of Human Stepping.

Journal: Sensors (Basel, Switzerland)

Authors' code: meaghanspedden/stepping_opm_data (no license)

Status: code verified, 30 files readable, 3 matches

[15342] doi:10.7554/elife.88376 [paper, repository]

The interplay between homeostatic synaptic scaling and homeostatic structural plasticity maintains the robust firing rate of neural networks.

Journal: eLife

Authors' code: ErbB4/HSP-SS-interplay (no license)

Status: code verified, 92 files readable

[15343] doi:10.7554/elife.98634 [paper, data]

Multifaceted role of galanin in brain excitability.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 3 July 2025 (39 papers)

[15344] doi:10.1007/s00429-025-02976-8 [paper, repository]

Individual uniqueness of connectivity gradients is driven by the complexity of the embedded networks and their dispersion.

Journal: Brain structure & function

Authors' code: SOC-PAB-Lab/Connectivity-Gradients-Stability (no license)

Status: code verified, 5 files readable, 3 matches

[15345] doi:10.1016/j.celrep.2025.115923 [paper, repository]

Rhabdomyosarcoma fusion oncoprotein initially pioneers a neural signature in vivo.

Journal: Cell reports

Authors' code: lextallan/PerCell (MIT), cxtaslim/RNA-SeqEZPZ (CC-BY-NC-ND-4.0), Kendall-Cancer-Lab/PAX3-FOXO1_invivo_6hpf (no license), Zenodo 15391919 (CC-BY-4.0), ENCODE-DCC/chip-seq-pipeline2 (MIT), ENCODE-DCC/atac-seq-pipeline (MIT), igvteam/igv (MIT)

Status: code verified, 1,307 files readable, 7 matches

[15346] doi:10.1016/j.dcn.2025.101591 [paper]

Social profiles among youth with attention-deficit/hyperactivity disorder (ADHD): Evidence from the ABCD study.

Journal: Developmental cognitive neuroscience

Status: code on request

[15347] doi:10.1016/j.ebiom.2025.105836 [paper, data]

Cagrilintide lowers bodyweight through brain amylin receptors 1 and 3.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[15348] doi:10.1016/j.eurox.2025.100417 [paper, repository]

Fetal MRI study of brain differences in early-onset fetal growth restriction versus healthy controls at 30 weeks of gestation.

Journal: European journal of obstetrics & gynecology and reproductive biology: X

Authors' code: OSF v3s7t (no license)

Status: empty repository

[15349] doi:10.1016/j.isci.2025.113049 [paper, repository]

Inferring global exponents in subsampled neural systems.

Journal: iScience

Authors' code: decandia/subsampling (no license)

Status: code verified, 1 file readable

[15350] doi:10.1016/j.stemcr.2025.102575 [paper, repository]

Progenitor neighborhoods function as transient niches to sustain olfactory neurogenesis.

Journal: Stem cell reports

Authors' code: alifarhat40/bioacme (no license)

Status: code verified, 48 files readable

[15351] doi:10.1038/s41467-025-61156-8 [paper, data]

Mechanism of EHMT2-mediated genomic imprinting associated with Prader-Willi syndrome.

Journal: Nature communications

Status: data only, 2 datasets cited

[15352] doi:10.1038/s41467-025-61164-8 [paper, repository]

Descending projection neurons in the primary sensorimotor cortex regulate neuropathic pain and locomotion in mice.

Journal: Nature communications

Authors' code: Zenodo 14545435 (CC-BY-4.0)

Status: code verified

[15353] doi:10.1038/s41467-025-61312-0 [paper, data]

Pericyte pannexin1 controls cerebral capillary diameter and supports memory function.

Journal: Nature communications

Status: data only, 1 dataset cited

[15354] doi:10.1038/s41531-025-01020-0 [paper, repository]

Multiparametric quantitative MRI uncovers putamen microstructural changes in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: mezera/mrQ (MIT), MezerLab/mrGrad (no license), shirfilo/MDM_toolbox (MIT), shirfilo/r1_r2s_rel_toolbox (MIT)

Status: code verified, 196 files readable, 6 matches

[15355] doi:10.1038/s41588-025-02217-y [paper, repository]

Detecting and quantifying clonal selection in somatic stem cells.

Journal: Nature genetics

Authors' code: Wedge-lab/battenberg (AGPL-3.0), emily-mitchell/normal_haematopoiesis (no license), VerenaK90/SCIFER (MIT), VerenaK90/Clonal_hematopoiesis (no license), Zenodo 14507248 (CC-BY-4.0), Zenodo 14627371 (CC-BY-4.0)

Status: code verified, 203 files readable, 21 matches

[15356] doi:10.1038/s41597-025-05462-2 [paper, repository]

The "Podcast" ECoG dataset for modeling neural activity during natural language comprehension.

Journal: Scientific data

Authors' code: hassonlab/podcast-ecog-paper (no license)

Status: code verified, 10 files readable, 2 matches

[15357] doi:10.1038/s41598-025-07644-9 [paper, data]

Optimal feature encoding in early vision.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15358] doi:10.1038/s41598-025-09833-y [paper, repository]

A novel hybrid vision UNet architecture for brain tumor segmentation and classification.

Journal: Scientific reports

Authors' code: Zenodo 15771335 (CC-BY-4.0), renugadevi26/hvu_code (no license)

Status: code verified, 18 files readable, 3 matches

[15359] doi:10.1038/s42003-025-08435-8 [paper, repository]

Exposure to COVID-19 virus-like particles modulates firing patterns of cortical neurons in the mouse brain.

Journal: Communications biology

Authors' code: figshare 29238128 (CC-BY-4.0)

Status: code verified, 7 files readable, 2 matches

[15360] doi:10.1038/s42003-025-08439-4 [paper, repository]

Exploratory GABAa-informed control network modulates hyperarousal brain dynamics in chronic insomnia.

Journal: Communications biology

Authors' code: thomasyeolab/cbig (MIT), netneurolab/neuromaps (CC-BY-NC-SA-4.0), Zenodo 6968138 (other-open), singlesp/energy_landscape (no license)

Status: code verified, 2,263 files readable, 3 matches

[15361] doi:10.1080/07853890.2025.2526709 [paper, data]

Evaluating muscle characteristics and fall events: insights from real-world longitudinal data.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[15362] doi:10.1088/1741-2552/ade402 [paper, repository]

Annotating neurophysiologic data at scale with optimized human input.

Journal: Journal of neural engineering

Authors' code: penn-cnt/RNS_Annotation-Pipeline (CC-BY-4.0), kaggle.com/competitions/seizure-detection (no license)

Status: code verified, 60 files readable, 1 match

[15363] doi:10.1101/2025.06.30.662426 [paper, repository]

Multiscale wrinkling dynamics in epithelial shells

Journal: bioRxiv (preprint)

Authors' code: juglab/n2v (BSD-3-Clause)

Status: code verified, 47 files readable

[15364] doi:10.1101/2025.07.02.662710 [paper, repository]

Accurate and Interpretable Prediction of Antidepressant Treatment Response from Receptor-informed Neuroimaging

Journal: bioRxiv (preprint)

Authors' code: Imperial-MIND-lab/graphTRIP (BSD-3-Clause), netneurolab/hansen_receptors (CC-BY-NC-SA-4.0)

Status: code verified, 77 files readable, 25 matches

[15365] doi:10.1101/2025.07.02.662871 [paper, repository]

Pre-stimulus alpha power modulates trial-by-trial variability in theta rhythmic multisensory entrainment strength and theta-induced memory effect

Journal: bioRxiv (preprint)

Authors' code: OSF skm4q (no license)

Status: code verified, 14 files readable, 12 matches

[15366] doi:10.1101/2025.07.03.25330767 [paper, repository]

Quantification of Optical Coherence Tomography Features in >3500 Patients with Inherited Retinal Disease Reveals Novel Genotype-Phenotype Associations

Journal: medRxiv (preprint)

Authors' code: Eye2Gene (no license)

Status: code verified

[15367] doi:10.1111/his.15506 [paper, data]

A deep active learning framework for mitotic figure detection with minimal manual annotation and labelling.

Journal: Histopathology

Status: data only, 1 dataset cited

[15368] doi:10.1128/mbio.01249-25 [paper, data]

IFNγ-inducible Gbp4 and Irgb6 contribute to experimental cerebral malaria pathology in the olfactory bulb.

Journal: mBio

Status: data only, 1 dataset cited

[15369] doi:10.1177/20503121251352360 [paper, data]

Investigating the neural correlates of the left thalamus in women with fibromyalgia: A Granger causality and voxel-based morphometry approach.

Journal: SAGE open medicine

Status: data only, 1 dataset cited

[15370] doi:10.1186/s12935-025-03823-w [paper, data]

HIF-1α and HIF-2α: synergistic regulation of glioblastoma malignant progression during hypoxia and apparent chemosensitization in response to hyperbaric oxygen.

Journal: Cancer cell international

Status: data only, 1 dataset cited

[15371] doi:10.1186/s13059-025-03670-y [paper, data]

A new IDH-independent hypermethylation phenotype is associated with astrocyte-like cell state in glioblastoma.

Journal: Genome biology

Status: data only, 2 datasets cited

[15372] doi:10.1186/s40246-025-00789-8 [paper, repository]

Shared genetic architecture between stroke and blood lipids: a large-scale genome-wide cross-trait analysis.

Journal: Human genomics

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable, 2 matches

[15373] doi:10.1371/journal.pcbi.1012156 [paper, repository]

Cooperative coding of continuous variables in networks with sparsity constraint.

Journal: PLoS computational biology

Authors' code: NatalieSchieferstein/CoopCodeSpiking (GPL-3.0), Zenodo 15553757 (GPL-3.0), PaulZOnGit/CoopCodingRate (MIT), Zenodo 15555348 (MIT)

Status: code verified, 22 files readable, 7 matches

[15374] doi:10.1371/journal.pone.0326449 [paper, data]

Distinct neural patterns for various information in working memory: A brain connectivity study.

Journal: PloS one

Status: data only, 1 dataset cited

[15375] doi:10.1371/journal.pone.0326897 [paper, data]

Semaglutide ameliorates diabetes-associated cognitive dysfunction in mouse model of type 2 diabetes.

Journal: PloS one

Status: data only, 1 dataset cited

[15376] doi:10.2196/63847 [paper, repository]

Optimizing Vital Signs in Patients With Traumatic Brain Injury: Reinforcement Learning Algorithm Development and Validation.

Journal: Journal of medical Internet research

Authors' code: supp:PMC12244269/jmir-v27-e63847-s003.zip (no license)

Status: code verified, 17 files readable, 2 matches

[15377] doi:10.3389/fcell.2025.1577045 [paper, data]

Age-dependent integration of cortical progenitors transplanted at CSF-neurogenic niche interface.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[15378] doi:10.3389/fnins.2025.1489800 [paper, data]

An exploration of the editing cut as an articulator in film through frequency domain analysis of spectator EEGs.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[15379] doi:10.3389/fnins.2025.1618514 [paper, data]

MLG: a mixed local and global model for brain tumor classification.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[15380] doi:10.3390/v17070944 [paper, data]

The Gene Expression Profile of Milk Somatic Cells of Small Ruminant Lentivirus-Seropositive and -Seronegative Dairy Goats (<i>Capra hircus</i>) During Their First Lactation.

Journal: Viruses

Status: data only, 1 dataset cited

[15381] doi:10.7554/elife.103636 [paper, repository]

Elucidating the selection mechanisms in context-dependent computation through low-rank neural network modeling.

Journal: eLife

Authors' code: sillybun/selection_vector_modulation_lowrank_rnn (Apache-2.0)

Status: code verified, 8 files readable

[15382] doi:10.7554/elife.104996 [paper, repository]

Intrinsic dynamic shapes responses to external stimulation in the human brain.

Journal: eLife

Authors' code: MaxNentwich/varx_demo (MIT), Zenodo 15127333 (MIT)

Status: code verified, 180 files readable, 17 matches

Wednesday, 2 July 2025 (58 papers)

[15383] doi:10.1007/s11571-025-10289-z [paper, data]

Linear modeling of brain activity during selective attention to continuous speech: the critical role of the N1 effect in event-related potentials to acoustic edges.

Journal: Cognitive neurodynamics

Status: data only, 1 dataset cited

[15384] doi:10.1016/j.conb.2025.103074 [paper, repository]

What's the occasion? Phasic dopamine signaling and interoception.

Journal: Current opinion in neurobiology

Authors' code: jaimemcc/time-averaged-da (GPL-3.0)

Status: code verified, 5 files readable

[15385] doi:10.1021/acsomega.5c01993 [paper, data]

Computational Study of Pathogenic Variants in Phenylalanine-4-hydroxylase (PAH): Insights into Structure, Dynamics, and BH<sub>4</sub> Binding.

Journal: ACS omega

Status: data only, 1 dataset cited

[15386] doi:10.1038/s41398-025-03441-0 [paper, repository]

Beyond homogeneity: charting the landscape of heterogeneity in neurodevelopmental and psychiatric electroencephalography.

Journal: Translational psychiatry

Authors' code: MINDIG-1/NM-Psy (no license)

Status: code verified, 10 files readable, 2 matches

[15387] doi:10.1038/s41398-025-03448-7 [paper, data]

Characterization of Neurensin-2 knockout mice: insights into stress-resilience mechanisms.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[15388] doi:10.1038/s41467-025-61042-3 [paper, data]

Immature Acta2<sup>R179C/+</sup> smooth muscle cells cause moyamoya-like cerebrovascular lesions in mice prevented by boosting OXPHOS.

Journal: Nature communications

Status: data only, 2 datasets cited

[15389] doi:10.1038/s41467-025-61251-w [paper, repository]

Functional contrast across the gray-white matter boundary.

Journal: Nature communications

Authors' code: geyerou/Gray-White-Matter-Boundary (no license)

Status: code verified, 4 files readable

[15390] doi:10.1038/s41586-025-09142-4 [paper, repository]

Discovering cognitive strategies with tiny recurrent neural networks.

Journal: Nature

Authors' code: psuthaharan/covid19paranoia (no license), jil095/tinyRNN (no license)

Status: code verified, 274 files readable, 11 matches

[15391] doi:10.1038/s41586-025-09211-8 [paper, repository]

A mouse brain stereotaxic topographic atlas with isotropic 1-μm resolution.

Journal: Nature

Authors' code: Kitware/VTK (BSD-2-Clause), mrdoob/three.js (MIT), google/neuroglancer (Apache-2.0), farrell236/SVRnet (MIT)

Status: code verified, 4,687 files readable, 1 match

[15392] doi:10.1038/s41586-025-09215-4 [paper, repository]

A foundation model to predict and capture human cognition.

Journal: Nature

Authors' code: huggingface.co/marcelbinz/llama-3.1-centaur-70b-adapter (no license), marcelbinz/Llama-3.1-Centaur-70B (Apache-2.0)

Status: code verified, 74 files readable, 16 matches

[15393] doi:10.1038/s41597-025-05435-5 [paper, data]

EEG dataset from playing Multiplayer Online Battle Arena games in natural settings.

Journal: Scientific data

Status: data only, 1 dataset cited

[15394] doi:10.1038/s41598-025-02890-3 [paper, data]

Lightweight convolutional neural networks using nonlinear Lévy chaotic moth flame optimisation for brain tumour classification via efficient hyperparameter tuning.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15395] doi:10.1038/s41598-025-05447-6 [paper]

A sensation driven functional MRI study on brain activation during bladder filling in healthy participants.

Journal: Scientific reports

Status: code on request

[15396] doi:10.1038/s41598-025-05517-9 [paper, data]

New microRNA-based therapies reveal common targets in paediatric medulloblastoma and adult glioblastoma.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15397] doi:10.1038/s41598-025-05632-7 [paper, repository]

Identifying individuals from their brain natural frequency fingerprints.

Journal: Scientific reports

Authors' code: necog-UAM (no license)

Status: code verified

[15398] doi:10.1038/s41598-025-06065-y [paper, data]

Trimetazidine stimulates intracellular Ca<sup>2+</sup> transients and zebrafish locomotor activity in spinal neurons.

Journal: Scientific reports

Status: data only, 2 datasets cited

[15399] doi:10.1038/s41598-025-06364-4 [paper, repository]

Advancing BCI with a transformer-based model for motor imagery classification.

Journal: Scientific reports

Authors' code: BlackCattt9/EEGEncoder (no license)

Status: code verified, 4 files readable

[15400] doi:10.1038/s41598-025-06489-6 [paper, data]

Spectral feature modeling with graph signal processing for brain connectivity in autism spectrum disorder.

Journal: Scientific reports

Status: data only, 2 datasets cited

[15401] doi:10.1038/s41598-025-06519-3 [paper, repository]

A dual path graph neural network framework for dementia diagnosis.

Journal: Scientific reports

Authors' code: gitcode.com/kooooooooooo/bi-mcgnn2025 (no license)

Status: code found, still to be checked

[15402] doi:10.1038/s41598-025-06529-1 [paper, data]

Multi channel fusion diffusion models for brain tumor MRI data augmentation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15403] doi:10.1038/s41598-025-06779-z [paper, repository]

Machine learning for experimental design of ultrafast electron diffraction.

Journal: Scientific reports

Authors' code: MATSAIL-TAMU/ML-UED (MIT)

Status: code verified, 6 files readable, 6 matches

[15404] doi:10.1038/s41598-025-06919-5 [paper, repository]

Modeling visual working memory using recurrent on-center off-surround neural network with distance dependent inhibition.

Journal: Scientific reports

Authors' code: rakesh-sengupta/vwm-change-detect (MIT)

Status: code verified, 3 files readable, 5 matches

[15405] doi:10.1038/s41598-025-06994-8 [paper, data]

Body roundness index and mental health in middle-aged and elderly adults: a prospective cohort study.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[15406] doi:10.1038/s41598-025-07112-4 [paper, data]

A refined lion optimizer for deep learning.

Journal: Scientific reports

Status: data only, 4 datasets cited

[15407] doi:10.1038/s41598-025-07257-2 [paper, data]

Deep learning strategies for semantic segmentation of pediatric brain tumors in multiparametric MRI.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15408] doi:10.1038/s41598-025-07466-9 [paper, data]

Hierarchical in-out fusion for incomplete multimodal brain tumor segmentation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15409] doi:10.1038/s41598-025-07703-1 [paper, data]

Scalable geometric learning with correlation-based functional brain networks.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15410] doi:10.1038/s41598-025-07807-8 [paper, data]

A federated learning-based privacy-preserving image processing framework for brain tumor detection from CT scans.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15411] doi:10.1038/s41598-025-08092-1 [paper, data]

Classifying and diagnosing Alzheimer's disease with deep learning using 6735 brain MRI images.

Journal: Scientific reports

Status: data only, 2 datasets cited

[15412] doi:10.1038/s41598-025-08373-9 [paper, repository]

Lizards and tortoises show evidence of low inhibitory control.

Journal: Scientific reports

Authors' code: r-project.org (no license)

Status: code verified

[15413] doi:10.1038/s41598-025-08611-0 [paper, repository]

Educational multimedia design principles affect local and global information processing in functional brain networks.

Journal: Scientific reports

Authors' code: K-Hun/multimedia-learning-hci (no license)

Status: code verified, 9 files readable

[15414] doi:10.1038/s41598-025-99501-y [paper, data]

A quantum-inspired neural fuzzy sliding mode control framework for fractional-order modeling of intraocular pressure regulation and optic nerve damage in glaucoma.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15415] doi:10.1038/s44271-025-00281-y [paper, repository]

Electrical stimulation of smiling muscles reduces visual processing load and enhances happiness perception in neutral faces.

Journal: Communications psychology

Authors' code: tinyurl.com/4wjy78nb (no license), Zenodo 15364133 (CC-BY-4.0)

Status: code verified, 1 file readable, 4 matches

[15416] doi:10.1038/s44303-025-00094-y [paper]

High contrast fluorescence polarization microscopy through double tagged photoswitchable fluorescent proteins.

Journal: Npj imaging

Status: code on request

[15417] doi:10.1089/neur.2025.0052 [paper]

Identifying a Biological Signature of Trauma-Related Neurodegeneration Following Repeated Traumatic Brain Injuries Compared with Healthy Controls.

Journal: Neurotrauma reports

Status: code on request

[15418] doi:10.1093/braincomms/fcaf261 [paper, data]

Downregulation of <i>NEAT1</i> due to loss of TDP-43 function exacerbates motor neuron degeneration in amyotrophic lateral sclerosis.

Journal: Brain communications

Status: data only, 1 dataset cited

[15419] doi:10.1103/1258-cl48 [paper, repository]

Collective Dynamics of Frustrated Biological Neuron Networks.

Journal: PRX life

Authors' code: figshare 23298476 (CC-BY-4.0), rwl23/collective_dynamics_of_frustrated_biological_neuron_networks (no license)

Status: code verified, 11 files readable

[15420] doi:10.1126/sciadv.adr6470 [paper, repository]

Simultaneous two-color imaging with a dual-channel miniscope in freely behaving mice.

Journal: Science advances

Authors' code: Aharoni-Lab/Miniscope-DAQ-QT-Software (GPL-3.0), denisecailab/ezTrack (GPL-3.0), denisecailab/Miniscope_2s-validation (no license)

Status: code verified, 254 files readable

[15421] doi:10.1126/sciadv.adw4939 [paper, repository]

Spatial-offset pump-probe imaging of nonradiative dynamics at optical resolution.

Journal: Science advances

Authors' code: datadryad.org/share/jyssobkjlvfhdogsxchu6h8tw8o3gm7zsfc1utupjtw (no license)

Status: code verified

[15422] doi:10.1126/scitranslmed.adu2459 [paper, data]

A genome-wide in vivo CRISPR activation screen identifies BACE1 as a therapeutic vulnerability of lung cancer brain metastasis.

Journal: Science translational medicine

Status: data only, 1 dataset cited

[15423] doi:10.1162/imag.a.63 [paper, repository]

When age tips the balance: A dual mechanism affecting hemispheric specialization for language.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: loiclabache/RogerLabache_2023_LanguAging (MIT), Zenodo 10278266 (CC-BY-4.0)

Status: code verified, 11 files readable, 6 matches

[15424] doi:10.1162/imag.a.64 [paper, repository]

The fluctuations of alpha power: Bimodalities, connectivity, and neural mass models.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: jescab01/AlphaFluctuations_2025 (no license)

Status: code verified, 30 files readable, 12 matches

[15425] doi:10.1186/s11689-025-09622-8 [paper, data]

Diffusivity alterations related to cognitive performance and phenylalanine levels in early-treated adults with phenylketonuria.

Journal: Journal of neurodevelopmental disorders

Status: data only, 1 dataset cited

[15426] doi:10.1186/s12877-025-05740-z [paper, repository]

A secondary analysis of cortical atrophy and plasma amyloid β patterns in older patients with cognitive frailty undergoing elective surgery.

Journal: BMC geriatrics

Authors' code: Wiebachj/POCDr (other)

Status: code verified, 3 files readable

[15427] doi:10.1186/s41065-025-00491-8 [paper, data]

TIMP1 promotes microglia M2 polarization through MAPK pathway to ameliorate early brain injury after ischemia.

Journal: Hereditas

Status: data only, 1 dataset cited

[15428] doi:10.1371/journal.pcbi.1013226 [paper, repository]

Nucleus accumbens dopamine release reflects Bayesian inference during instrumental learning.

Journal: PLoS computational biology

Authors' code: Wilbrecht-Lab/cogmodels (MIT)

Status: code verified, 15 files readable, 7 matches

[15429] doi:10.1371/journal.pone.0325977 [paper, data]

Newly acquired word-action associations trigger auditory cortex activation during movement preparation: Implications for Hebbian plasticity in action word learning.

Journal: PloS one

Status: data only, 1 dataset cited

[15430] doi:10.1371/journal.pone.0326163 [paper, data]

Regular physical activity affects brain activities in old individuals: an observational study.

Journal: PloS one

Status: data only, 1 dataset cited

[15431] doi:10.3389/fmed.2025.1596726 [paper, data]

OculusNet: Detection of retinal diseases using a tailored web-deployed neural network and saliency maps for explainable AI.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[15432] doi:10.3389/fmicb.2025.1595742 [paper, data]

The potential of olfaction loss to induce cognitive impairment and anxiety behavior in mice via the microbiota-gut-brain axis.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[15433] doi:10.3389/fnins.2025.1555657 [paper, repository]

A multi-graph convolutional network method for Alzheimer's disease diagnosis based on multi-frequency EEG data with dual-mode connectivity.

Journal: Frontiers in neuroscience

Authors' code: XQJMJ/MF-MGCN (no license)

Status: code verified, 2 files readable

[15434] doi:10.3389/fnrgo.2025.1578586 [paper, data]

How low can you go: evaluating electrode reduction methods for EEG-based speech imagery BCIs.

Journal: Frontiers in neuroergonomics

Status: data only, 2 datasets cited

[15435] doi:10.3390/audiolres15040078 [paper, data]

Individual Noise-Tolerance Profiles and Neural Signal-to-Noise Ratio: Insights into Predicting Speech-in-Noise Performance and Noise-Reduction Outcomes.

Journal: Audiology research

Status: data only, 1 dataset cited

[15436] doi:10.3390/cells14131014 [paper, repository]

Understanding Microglia in Mesocorticolimbic Circuits: Implications for the Study of Chronic Stress and Substance Use Disorders.

Journal: Cells

Authors' code: Zenodo 14159877 (CC-BY-4.0), cgk-laboratory/cellselect-3dmorph (MIT)

Status: code verified, 116 files readable

[15437] doi:10.3390/jimaging11070220 [paper, data]

Spectro-Image Analysis with Vision Graph Neural Networks and Contrastive Learning for Parkinson's Disease Detection.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[15438] doi:10.3390/s25134135 [paper, data]

Latency and Amplitude of Cortical Activation in Interactive vs. Passive Tasks: An fNIRS Study Using the NefroBall System.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[15439] doi:10.4103/bc.bc_163_24 [paper, data]

Exacerbation of hemorrhagic stroke and impaired hemostasis in mice deficient of the integrated stress response kinase heme-regulated inhibitor.

Journal: Brain circulation

Status: data only, 1 dataset cited

[15440] doi:10.7554/elife.101959 [paper, repository]

Inference technique for the synaptic conductances in rhythmically active networks and application to respiratory central pattern generation circuits.

Journal: eLife

Authors' code: doi:10.5061/dryad.bcc2fqzrp (no license)

Status: code verified

Tuesday, 1 July 2025 (251 papers, 16 on this page)

[15441] doi:10.1001/jamanetworkopen.2025.28532 [paper, repository]

Psychopathology and Gaming Disorder in Adolescents.

Journal: JAMA network open

Authors' code: OSF jkw3e (no license)

Status: empty repository

[15442] doi:10.1002/ab.70036 [paper, repository]

A Meta-Analysis of the Effects of Transcranial Direct Current Stimulation on Anger and Aggression.

Journal: Aggressive behavior

Authors' code: OSF ty5sn (no license)

Status: code verified, 3 files readable, 3 matches

[15443] doi:10.1002/acn3.70115 [paper, data]

Time-Frequency Fingerprint Analysis in SEEG Source-Space to Identify the Epileptogenic Zone.

Journal: Annals of clinical and translational neurology

Status: data only, 1 dataset cited

[15444] doi:10.1002/alz.70227 [paper, repository]

Real-world brain imaging in a population-based cohort enables accurate markers for dementia.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: rsund/OSTPRE-brain-MRI (no license)

Status: code verified, 25 files readable, 13 matches

[15445] doi:10.1002/alz.70347 [paper, repository]

Regional effects of gantenerumab on neuroimaging biomarkers in the DIAN-TU-001 trial.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: ysu001/PUP (BSD-3-Clause)

Status: code verified, 277 files readable

[15446] doi:10.1002/alz.70367 [paper, repository]

Structural and functional connectivity in tau mutation carriers: from presymptomatic to symptomatic frontotemporal dementia.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Vince-LD/DWEZ (no license), mvlearn.github.io/references (no license)

Status: code verified

[15447] doi:10.1002/alz.70379 [paper, repository]

A novel approach to resilience and its links with education and Alzheimer's disease genetics.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: imputation.biodatacatalyst.nhlbi.nih.gov (no license)

Status: code verified

[15448] doi:10.1002/alz.70395 [paper, data]

Frontal cortex pyramidal neuron expression profiles differentiate the prodromal stage from progressive degeneration across the Alzheimer's disease spectrum.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[15449] doi:10.1002/alz.70406 [paper, repository]

Synbiotics of Lactobacillus suilingensis and inulin alleviates cognitive impairment via regulating gut microbiota indole-3-lactic acid metabolism in female AD mice.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: biobakery/metawibele (MIT), eggnogdb/eggnog-mapper (AGPL-3.0), DerrickWood/kraken2 (MIT)

Status: code verified, 265 files readable

[15450] doi:10.1002/alz.70496 [paper, repository]

24-hour activity cycle behaviors and gray matter volume in mild cognitive impairment.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: guimbalbim/24hac_brain_cortical_volume (no license)

Status: code verified, 2 files readable, 1 match

[15451] doi:10.1002/brb3.70650 [paper, data]

Advancing Spike Sorting Through Gradient-Based Preprocessing and Nonlinear Reduction With Agglomerative Clustering.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[15452] doi:10.1002/brb3.70664 [paper, repository]

Integrating Genetic and Single-Cell Genomic Data to Reveal Brain Cell-Specific Regulation of Attention-Deficit/Hyperactivity Disorder Risk in the Prefrontal Cortex.

Journal: Brain and behavior

Authors' code: gjw2025up/Single-cell-eQTL-MR (no license)

Status: code verified, 2 files readable, 3 matches

[15453] doi:10.1002/brb3.70689 [paper, repository]

A FastSurfer Database for Age-Specific Brain Volumes in Healthy Children: A Tool for Quantifying Localized and Global Brain Volume Alterations in Pediatric Patients.

Journal: Brain and behavior

Authors' code: Zenodo 11521841 (MIT), ibrazug/kinderseg (MIT)

Status: code verified, 144 files readable, 2 matches

[15454] doi:10.1002/cam4.70993 [paper, data]

Identification of the Oncogenic Role of MSH2 in the Stemness and Progression of Glioma Through Regulating Wnt Signaling Pathway.

Journal: Cancer medicine

Status: data only, 1 dataset cited

[15455] doi:10.1002/cnm.70057 [paper, data]

Inverse Problem Regularization for 3D Multi-Species Tumor Growth Models.

Journal: International journal for numerical methods in biomedical engineering

Status: data only, 1 dataset cited

[15456] doi:10.1002/cpz1.70161 [paper, repository]

PASTa: An Open-Source Analysis and Signal Processing Toolbox for Fiber Photometry Data.

Journal: Current protocols

Authors' code: rdonka/PASTa (no license)

Status: code verified, 71 files readable, 40 matches

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