Every paper, by date: page 70

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 70 of 200: 1 July 2025.

Tuesday, 1 July 2025 (251 papers, 224 on this page)

[15457] doi:10.1002/ctm2.70420 [paper]

YOD1 regulates oxidative damage of dopamine neurons in Parkinson's disease by deubiquitinating PKM2.

Journal: Clinical and translational medicine

Status: data only

[15458] doi:10.1002/dad2.70159 [paper, repository]

Classifying mild cognitive impairment from normal cognition: fMRI complexity matches tau PET performance.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: kayjann/complexity (no license)

Status: code verified, 39 files readable

[15459] doi:10.1002/dad2.70165 [paper, repository]

Accounting for white matter uptake improves between tracer agreement in amyloid PET.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: ysu001/PUP (BSD-3-Clause)

Status: code verified, 277 files readable

[15460] doi:10.1002/dad2.70171 [paper]

A vision transformer approach for fully automated and scalable dementia screening using clock drawing test images.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Status: code on request

[15461] doi:10.1002/dad2.70176 [paper, repository]

Alzheimer's disease neuropathology and longitudinal change in subjective cognitive complaints.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: bilgelm/PET-and-CFQ (no license)

Status: code verified, 3 files readable, 12 matches

[15462] doi:10.1002/hbm.70267 [paper, repository]

Sensory Entrained TMS (seTMS) Enhances Motor Cortex Excitability.

Journal: Human brain mapping

Authors' code: jross4-stanford/R-SAP (no license)

Status: code verified, 1 file readable, 1 match

[15463] doi:10.1002/hbm.70268 [paper, data]

A Cerebellar Partitioning Method Using Spectral Clustering With Optimized Nonlinear Functional Connectivity.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[15464] doi:10.1002/hbm.70277 [paper, repository]

Unraveling Hierarchical Brain Dysfunction in Major Depressive Disorder: A Multimodal Imaging and Transcriptomic Approach.

Journal: Human brain mapping

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable, 2 matches

[15465] doi:10.1002/hbm.70279 [paper, repository]

Neural Mechanisms of Feedback Processing and Regulation Recalibration During Neurofeedback Training.

Journal: Human brain mapping

Authors' code: gustavopamplona/FeedbackReward (no license)

Status: code verified, 62 files readable, 4 matches

[15466] doi:10.1002/hbm.70287 [paper, repository]

Limitations of Correlation Coefficients in Research on Functional Connectomes and Psychological Processes.

Journal: Human brain mapping

Authors' code: OSF 3n5hz (no license)

Status: code verified, 6 files readable, 2 matches

[15467] doi:10.1002/jev2.70125 [paper, repository]

Umbilical Cord-Mesenchymal Stromal Cell-Derived Extracellular Vesicles Target the Liver to Improve Neurovascular Health in Type 2 Diabetes With Non-Alcoholic Fatty Liver Disease.

Journal: Journal of extracellular vesicles

Authors' code: amplab/snap (Apache-2.0)

Status: code verified, 166 files readable

[15468] doi:10.1002/mp.17963 [paper, repository]

Assessment and mitigation of geometric distortions in Cartesian MR images at 15.2T for preclinical radiation research.

Journal: Medical physics

Authors' code: isselmou92/DistortionCorrection (MIT)

Status: code verified, 9 files readable, 3 matches

[15469] doi:10.1002/mrm.30542 [paper, repository]

Achieving robust labeling above the circle of Willis with vessel-encoded arterial spin labeling.

Journal: Magnetic resonance in medicine

Authors' code: SpinEvo/labeling_above_cow (no license), Zenodo 7952965 (other-open), tomokell/bloch_sim (other)

Status: code verified, 104 files readable, 6 matches

[15470] doi:10.1002/nbm.70064 [paper, repository]

The Goldilocks Zone for 3-T MRS Studies Using Semi-LASER: Determining the Optimal Balance Between Repetition Time and Scan Time.

Journal: NMR in biomedicine

Authors' code: alexensworth/TRISP (no license)

Status: code verified, 2 files readable, 4 matches

[15471] doi:10.1002/nbm.70067 [paper, repository]

Inversion Efficiency Model Yields Improved Accuracy in MP2RAGE-Based T<sub>1</sub> Mapping in the Human Brain at 7.0T.

Journal: NMR in biomedicine

Authors' code: JosePMarques/MP2RAGE-related-scripts (GPL-3.0), OlssonHampus/MP2RAGE_custom_finv (no license)

Status: code verified, 42 files readable, 2 matches

[15472] doi:10.1002/nbm.70076 [paper, repository]

Physiological Confounds in BOLD-fMRI and Their Correction.

Journal: NMR in biomedicine

Authors' code: rapidtide.readthedocs.io (no license)

Status: code verified

[15473] doi:10.1002/sim.70186 [paper, repository]

A Latent-Class Model for Time-To-Event Outcomes and High-Dimensional Imaging Data.

Journal: Statistics in medicine

Authors' code: jiahfeng/LCM_image (no license)

Status: code verified, 4 files readable, 3 matches

[15474] doi:10.1007/s10565-025-10061-3 [paper, data]

YTHDF1 promotes p53 translation and induces ferroptosis during acute cerebral ischemia/reperfusion through m<sup>6</sup>A-dependent binding.

Journal: Cell biology and toxicology

Status: data only, 1 dataset cited

[15475] doi:10.1016/j.cortex.2025.06.007 [paper, repository]

Reduced temporal organization of narrative recall in adults with moderate-severe traumatic brain injury.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Authors' code: OSF 3fdsz (no license)

Status: code verified, 7 files readable, 4 matches

[15476] doi:10.1016/j.cortex.2025.06.008 [paper, repository]

Effective neural connectivity deficits during speech auditory feedback processing in post-stroke aphasia: An fMRI study.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Authors' code: OSF jcrvg (no license)

Status: code verified, 2 files readable

[15477] doi:10.1016/j.isci.2025.113032 [paper, repository]

Pre-sleep experiences shape neural activity and dream content in the sleeping brain.

Journal: iScience

Authors' code: OSF 2bkus (no license)

Status: code verified, 25 files readable, 2 matches

[15478] doi:10.1016/j.isci.2025.113039 [paper]

Prevalence and risk factors for asymptomatic venous thromboembolism in patients with primary brain tumors.

Journal: iScience

Status: code on request

[15479] doi:10.1016/j.isci.2025.113041 [paper]

Cholinotrophic basal forebrain connectome dysfunction in Down syndrome with and without dementia.

Journal: iScience

Status: code on request

[15480] doi:10.1016/j.isci.2025.113042 [paper, repository]

Eccentricity-dependent saccadic reaction time: The roles of foveal magnification and attentional orienting.

Journal: iScience

Authors' code: esi-neuroscience/ARCADE (GPL-3.0), Zenodo 15686112 (CC-BY-4.0)

Status: code verified, 390 files readable

[15481] doi:10.1016/j.jbc.2025.110432 [paper, repository]

Targeting HIF-P4H-2 in APP/PS1 Alzheimer's mouse model improves glucose metabolism, reduces dystrophic neuritis, and maintains exploratory activity.

Journal: The Journal of biological chemistry

Authors' code: snakemake.github.io (no license), stnava.github.io/ants (no license)

Status: code verified

[15482] doi:10.1016/j.jbc.2025.110433 [paper, data]

Hypoxia-inducible factor 1α in Schwann cells promotes peripheral nerve myelination.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[15483] doi:10.1016/j.ynpai.2025.100194 [paper, data]

NGF stimulation alters the transcriptome and surface TrkB expression in axons of dorsal root ganglion neurons.

Journal: Neurobiology of pain (Cambridge, Mass.)

Status: data only, 1 dataset cited

[15484] doi:10.1016/j.ynpai.2025.100201 [paper, repository]

Brain aging among individuals with trigeminal neuralgia.

Journal: Neurobiology of pain (Cambridge, Mass.)

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable, 1 match

[15485] doi:10.1038/s41398-025-03446-9 [paper, repository]

Reduced neural suppression at occipital cortex in subthreshold depression.

Journal: Translational psychiatry

Authors' code: OSF 68trj (no license)

Status: code verified, 20 files readable, 1 match

[15486] doi:10.1038/s41467-025-58573-0 [paper, data]

Non-canonical nuclear function of glutaminase cooperates with Wnt signaling to drive EMT during neural crest development.

Journal: Nature communications

Status: data only, 1 dataset cited

[15487] doi:10.1038/s41467-025-59150-1 [paper, repository]

Visualizing PIEZO1 localization and activity in hiPSC-derived single cells and organoids with HaloTag technology.

Journal: Nature communications

Authors' code: doi:10.5061/dryad.w6m905qwm (no license), Zenodo 15059239 (CC-BY-4.0), Zenodo 15048049 (CC-BY-4.0), pathak-lab/piezo1-localizationtools (MIT)

Status: code verified, 188 files readable, 1 match

[15488] doi:10.1038/s41467-025-59575-8 [paper, repository]

Context-invariant socioemotional encoding by prefrontal ensembles.

Journal: Nature communications

Authors' code: nickfrostneuro/Static-Dynamic (no license)

Status: code verified, 15 files readable, 4 matches

[15489] doi:10.1038/s41467-025-59915-8 [paper, repository]

Perceived community alignment increases information sharing.

Journal: Nature communications

Authors' code: Zenodo 15080346 (CC-BY-4.0), Zenodo 11106494 (CC-BY-4.0), Zenodo 11432270 (CC-BY-4.0)

Status: code verified, 3 files readable, 3 matches

[15490] doi:10.1038/s41467-025-60308-0 [paper, data]

Reduction of neuronal activity mediated by blood-vessel regression in the adult brain.

Journal: Nature communications

Status: data only, 1 dataset cited

[15491] doi:10.1038/s41467-025-60360-w [paper, repository]

Projection-TAGs enable multiplex projection tracing and multi-modal profiling of projection neurons.

Journal: Nature communications

Authors' code: Samineni-Lab/Projection-TAGs (no license)

Status: code verified, 7 files readable, 5 matches

[15492] doi:10.1038/s41467-025-60366-4 [paper, repository]

Individualizing glioma radiotherapy planning by optimization of a data and physics-informed discrete loss.

Journal: Nature communications

Authors' code: m1balcerak/GliODIL (MIT)

Status: code verified, 33 files readable

[15493] doi:10.1038/s41467-025-60446-5 [paper, repository]

High-resolution detection of copy number alterations in single cells with HiScanner.

Journal: Nature communications

Authors' code: raphael-group/chisel (BSD-3-Clause), parklab/scanner (MIT), parklab/HiScanner (MIT), Zenodo 15108638 (MIT)

Status: code verified, 273 files readable, 8 matches

[15494] doi:10.1038/s41467-025-60451-8 [paper, repository]

Longitudinal changes in brain asymmetry track lifestyle and disease.

Journal: Nature communications

Authors' code: MRCIEU/PHESANT (MIT), phewascatalog.org/phecodes_icd10 (no license), ksaltoun/asympath_age_progression (BSD-3-Clause), Zenodo 15392168 (BSD-3-Clause)

Status: code verified, 105 files readable, 13 matches

[15495] doi:10.1038/s41467-025-60511-z [paper, repository]

A normative principle governing memory transfer in cerebellar motor learning.

Journal: Nature communications

Authors' code: codeocean:3208717 (no license)

Status: code found, still to be checked

[15496] doi:10.1038/s41467-025-60512-y [paper, repository]

Acute stress causes sex-specific changes to ventral subiculum synapses, circuitry, and anxiety-like behavior.

Journal: Nature communications

Authors' code: LernerLab/GuPPy (BSD-3-Clause), BeierLaboratory/FiberPhotometry (MIT)

Status: code verified, 308 files readable, 2 matches

[15497] doi:10.1038/s41467-025-60529-3 [paper, repository]

A molecularly defined brain circuit module for regulating panic-like defensive state.

Journal: Nature communications

Authors' code: Researcher0123/-Code-for-Nature-communications-miniscope-data-analysis (no license)

Status: code verified, 5 files readable

[15498] doi:10.1038/s41467-025-60543-5 [paper, data]

Memantine inhibits calcium-permeable AMPA receptors.

Journal: Nature communications

Status: data only, 3 datasets cited

[15499] doi:10.1038/s41467-025-60556-0 [paper, repository]

Cell-specific mechanisms drive connectivity across the time course of Huntington's disease.

Journal: Nature communications

Authors' code: cestevezfraga/hd-mind-neurotransmitter (no license)

Status: code verified, 36 files readable, 12 matches

[15500] doi:10.1038/s41467-025-60585-9 [paper, repository]

Brain-wide input-output analysis of tuberal nucleus somatostatin neurons reveals hierarchical circuits for orchestrating feeding behavior.

Journal: Nature communications

Authors' code: gitee.com/bigduduwxf/neuron-vis (no license), sanderslab/magellanmapper (BSD-3-Clause), yufu1981/plotting_results (no license)

Status: code verified, 122 files readable, 9 matches

[15501] doi:10.1038/s41467-025-60592-w [paper, repository]

Reward history guides focal attention in whisker somatosensory cortex.

Journal: Nature communications

Authors' code: Zenodo 14888799 (CC-BY-4.0)

Status: code verified

[15502] doi:10.1038/s41467-025-60640-5 [paper, repository]

MassCube improves accuracy for metabolomics data processing from raw files to phenotype classifiers.

Journal: Nature communications

Authors' code: Zenodo 14159704 (CC-BY-4.0), huaxuyu/masscube (Apache-2.0), Zenodo 15151320 (CC-BY-4.0)

Status: code verified, 61 files readable, 26 matches

[15503] doi:10.1038/s41467-025-60648-x [paper, repository]

Closed-loop two-photon functional imaging in a freely moving animal.

Journal: Nature communications

Authors' code: GershowLab/CRASH2p (gnu)

Status: code verified, 128 files readable, 4 matches

[15504] doi:10.1038/s41467-025-60653-0 [paper, repository]

Single-cell analysis reveals a longitudinal trajectory of meningioma evolution and heterogeneity.

Journal: Nature communications

Authors' code: jylee07/meningioma (MIT)

Status: code verified, 7 files readable, 7 matches

[15505] doi:10.1038/s41467-025-60665-w [paper, repository]

Decoding DNA sequence-driven evolution of the human brain epigenome at cellular resolution.

Journal: Nature communications

Authors' code: konopkalab/HumanEpigenome_Evo (no license), Zenodo 15376944 (CC-BY-4.0)

Status: code verified, 37 files readable, 15 matches

[15506] doi:10.1038/s41467-025-60666-9 [paper, repository]

An intracranial dissection of human escape circuits.

Journal: Nature communications

Authors' code: andlab-um/sEEG-slow-fast-attack (MIT)

Status: code verified, 7 files readable, 3 matches

[15507] doi:10.1038/s41467-025-60679-4 [paper, repository]

Brain region-specific gain modulation of place cells by VIP neurons.

Journal: Nature communications

Authors' code: Zenodo 11179846 (CC-BY-4.0), vervaekelab/placegain (MIT)

Status: code verified, 94 files readable, 10 matches

[15508] doi:10.1038/s41467-025-60681-w [paper, repository]

Enhanced role of the entorhinal cortex in adapting to increased working memory load.

Journal: Nature communications

Authors' code: Zenodo 15355761 (CC-BY-4.0)

Status: code verified, 5 files readable, 1 match

[15509] doi:10.1038/s41467-025-60686-5 [paper, repository]

Genetic risk predicts adolescent mood pathology via sexual differentiation of brain function and physiological aging.

Journal: Nature communications

Authors' code: McIntosh-Lab/PLS (Apache-2.0)

Status: code verified, 365 files readable

[15510] doi:10.1038/s41467-025-60695-4 [paper, repository]

Boundary complexity of cortical and subcortical areas predicts deep brain stimulation outcomes in Parkinson's disease.

Journal: Nature communications

Authors' code: codeocean:9780346 (no license)

Status: code found, still to be checked

[15511] doi:10.1038/s41467-025-60697-2 [paper]

Stable recurrent dynamics in heterogeneous neuromorphic computing systems using excitatory and inhibitory plasticity.

Journal: Nature communications

Status: code on request

[15512] doi:10.1038/s41467-025-60709-1 [paper, repository]

Structural Repetition Detector for multi-scale quantitative mapping of molecular complexes through microscopy.

Journal: Nature communications

Authors' code: HenriquesLab/SReD (MIT)

Status: code verified, 31 files readable, 5 matches

[15513] doi:10.1038/s41467-025-60730-4 [paper, data]

Ghrelin-induced neuronal NPY promotes brain metastasis in lung cancer patients with low BMI.

Journal: Nature communications

Status: data only, 2 datasets cited

[15514] doi:10.1038/s41467-025-60731-3 [paper, data]

Unsupervised learning of temporal regularities in visual cortical populations.

Journal: Nature communications

Status: code on request, 1 dataset cited

[15515] doi:10.1038/s41467-025-60747-9 [paper, repository]

FABP7 is increased in progressive multiple sclerosis and induces a pro-inflammatory phenotype in monocytes through a glycolytic switch.

Journal: Nature communications

Authors' code: TNRC-code/FABP7 (no license)

Status: code verified, 4 files readable, 4 matches

[15516] doi:10.1038/s41467-025-60750-0 [paper, data]

HDL-bound S1P affects the subventricular niche and early neuropathological features of Alzheimer's disease.

Journal: Nature communications

Status: data only, 1 dataset cited

[15517] doi:10.1038/s41467-025-60753-x [paper, repository]

Microglial cyclooxygenase-1 modulates cerebral capillary basal tone in vivo in mice.

Journal: Nature communications

Authors' code: microgleyolab.com/s-projects-basic (no license)

Status: code verified

[15518] doi:10.1038/s41467-025-60774-6 [paper, repository]

Distinct subnetworks of the mouse anterior thalamic nuclei.

Journal: Nature communications

Authors' code: ucla-brain/atn_community (no license)

Status: dead link

[15519] doi:10.1038/s41467-025-60775-5 [paper, data]

RFC1 regulates the expansion of neural progenitors in the developing zebrafish cerebellum.

Journal: Nature communications

Status: data only, 2 datasets cited

[15520] doi:10.1038/s41467-025-60788-0 [paper, repository]

Movie-watching evokes ripple-like activity within events and at event boundaries.

Journal: Nature communications

Authors' code: codeocean:4543503 (no license)

Status: code found, still to be checked

[15521] doi:10.1038/s41467-025-60800-7 [paper, repository]

Neurons exploit stochastic growth to rapidly and economically build dense dendritic arbors.

Journal: Nature communications

Authors' code: SabyasachiSutradhar/Directed_Rod_Simulation (GPL-3.0)

Status: code verified, 8 files readable, 1 match

[15522] doi:10.1038/s41467-025-60806-1 [paper, repository]

Glial reactivity correlates with synaptic dysfunction across aging and Alzheimer's disease.

Journal: Nature communications

Authors' code: PascoalLab/rohden2025-glial-reactivity (no license)

Status: code verified, 2 files readable, 1 match

[15523] doi:10.1038/s41467-025-60815-0 [paper, repository]

A multicenter longitudinal study of cholinergic subgroups in Parkinson disease.

Journal: Nature communications

Authors' code: codeocean:3508354 (no license)

Status: code found, still to be checked

[15524] doi:10.1038/s41467-025-60825-y [paper, repository]

Large-scale synaptic dynamics drive the reconstruction of binocular circuits in mouse visual cortex.

Journal: Nature communications

Authors' code: Palpatineli/oi_analyzer (no license), Zenodo 15475970 (MIT), surlab/tsimring-enhanced-synaptic-dynamics-drive-the-reorganization-of-binocular-circuit (MIT)

Status: code verified, 133 files readable, 7 matches

[15525] doi:10.1038/s41467-025-60835-w [paper, repository]

Thalamocortical feedback selectively controls pyramidal neuron excitability.

Journal: Nature communications

Authors' code: jovo/oopsi (Apache-2.0)

Status: code verified, 11 files readable, 3 matches

[15526] doi:10.1038/s41467-025-60837-8 [paper, repository]

Brainstem noradrenergic modulation of the kisspeptin neuron GnRH pulse generator in mice.

Journal: Nature communications

Authors' code: feszilvi/Fiber_photom (GPL-3.0), Zenodo 15320261 (GPL-3.0), Zenodo 7334481 (no license)

Status: code verified, 9 files readable, 1 match

[15527] doi:10.1038/s41467-025-60859-2 [paper, repository]

Model mimicry limits conclusions about neural tuning and can mistakenly imply unlikely priors.

Journal: Nature communications

Authors' code: mijowolff/model-mimicry-and-unlikely-priors (no license), Zenodo 15480845 (CC-BY-4.0)

Status: code verified, 14 files readable, 8 matches

[15528] doi:10.1038/s41467-025-60878-z [paper, repository]

Advancing spatio-temporal processing through adaptation in spiking neural networks.

Journal: Nature communications

Authors' code: IGITUGraz/SE-adlif (CC-BY-SA-4.0), Zenodo 15364925 (CC-BY-4.0)

Status: code verified, 26 files readable, 9 matches

[15529] doi:10.1038/s41467-025-60882-3 [paper, repository]

Spatial profiling of chromatin accessibility in formalin-fixed paraffin-embedded tissues.

Journal: Nature communications

Authors' code: PengfeiGuo0123/Spatial-FFPE-ATAC-seq (no license), Zenodo 13207776 (CC-BY-4.0), Zenodo 15425611 (CC-BY-4.0), lihuamei/thymus (GPL-3.0)

Status: code verified, 55 files readable, 5 matches

[15530] doi:10.1038/s41467-025-60903-1 [paper, data]

Integrated dopamine sensing and 40 Hz hippocampal stimulation improves cognitive performance in Alzheimer's mouse models.

Journal: Nature communications

Status: data only, 1 dataset cited

[15531] doi:10.1038/s41467-025-60945-5 [paper, repository]

Keypoint-based modeling reveals fine-grained body pose tuning in superior temporal sulcus neurons.

Journal: Nature communications

Authors' code: codeocean:2215416 (no license)

Status: code found, still to be checked

[15532] doi:10.1038/s41467-025-60963-3 [paper, repository]

Zero shot molecular generation via similarity kernels.

Journal: Nature communications

Authors' code: RokasEl/hydromace (MIT), RokasEl/simgen (MIT), RokasEl/MolDiff-SiMGen (MIT), zincware/ZnDraw (GPL-2.0), Zenodo 8304530 (epl-2.0), Zenodo 15561496 (MIT), Zenodo 15292971 (MIT), Zenodo 15292983 (MIT)

Status: code verified, 976 files readable, 7 matches

[15533] doi:10.1038/s41467-025-61018-3 [paper, data]

Stimulation of corticospinal neurons by optogenetic cAMP inductions promotes motor recovery after spinal cord injury in female rats via raphespinal tract modulation.

Journal: Nature communications

Status: data only, 1 dataset cited

[15534] doi:10.1038/s41467-025-61020-9 [paper, repository]

Noncanonical short-latency auditory pathway directly activates deep cortical layers.

Journal: Nature communications

Authors' code: petersaj/AP_histology (GPL-3.0), KatoLabUNC/Garcia_et_al_2025 (MIT)

Status: code verified, 42 files readable, 8 matches

[15535] doi:10.1038/s41467-025-61037-0 [paper, repository]

Self-Contrastive Forward-Forward algorithm.

Journal: Nature communications

Authors' code: neurophysics-cnrsthales/contrastive-forward-forward (no license), Zenodo 15526033 (CC-BY-4.0)

Status: code verified, 20 files readable, 2 matches

[15536] doi:10.1038/s41467-025-61044-1 [paper, repository]

Axon targeting of transcriptionally distinct pioneer neurons is regulated by retinoic acid signaling.

Journal: Nature communications

Authors' code: anechipor/Nechiporuk-lab-Woodruff_et_al_2024 (no license)

Status: code verified, 5 files readable, 9 matches

[15537] doi:10.1038/s41467-025-61054-z [paper, repository]

Proteomic analysis of Down syndrome cerebrospinal fluid compared to late-onset and autosomal dominant Alzheimer´s disease.

Journal: Nature communications

Authors' code: edammer/parANOVA (MIT), edammer/GOparallel (MIT), edammer/CellTypeFET (MIT), edammer (no license)

Status: code verified, 10 files readable, 6 matches

[15538] doi:10.1038/s41467-025-61171-9 [paper, repository]

A simplified minimodel of visual cortical neurons.

Journal: Nature communications

Authors' code: sinzlab/sensorium (MIT), mouseland/minimodel (GPL-3.0)

Status: code verified, 71 files readable, 8 matches

[15539] doi:10.1038/s41467-025-61172-8 [paper]

Regional specialization of movement encoding across the primate sensorimotor cortex.

Journal: Nature communications

Status: code on request

[15540] doi:10.1038/s41467-025-61314-y [paper, repository]

Context flexibly modulates cue representations in visual cortex.

Journal: Nature communications

Authors' code: alexfaul/faulkner-2024-contextFlexiblyModulates-Nat-Comms (GPL-3.0), Zenodo 15477662 (GPL-3.0), alexfaul/faulkner-context-flexibly-modulates-natcomms (GPL-3.0)

Status: code verified, 48 files readable, 2 matches

[15541] doi:10.1038/s41467-025-61362-4 [paper, repository]

Parametric matrix models.

Journal: Nature communications

Authors' code: codeocean:5052239 (no license)

Status: code found, still to be checked

[15542] doi:10.1038/s41467-025-61531-5 [paper, repository]

Uncovering memorization effect in the presence of spurious correlations.

Journal: Nature communications

Authors' code: kohpangwei/group_DRO (MIT), aarentai/Silent-Majority (no license)

Status: code verified, 42 files readable, 6 matches

[15543] doi:10.1038/s41514-025-00235-y [paper, repository]

Identification of markers for neurescence through transcriptomic profiling of postmortem human brains.

Journal: npj aging

Authors' code: habilzare/alzheimer (GPL)

Status: code verified, 430 files readable, 10 matches

[15544] doi:10.1038/s41531-025-01043-7 [paper, repository]

Paramagnetic susceptibility mapping better quantifies brain iron content in Parkinson's disease with RBD.

Journal: NPJ Parkinson's disease

Authors' code: SMILE-Lab-ShanghaiTech/MuSus-100_Atlas (no license), AMRI-Lab/APART-QSM (no license)

Status: code verified, 13 files readable, 2 matches

[15545] doi:10.1038/s41531-025-01047-3 [paper, repository]

Postsynaptic adaptations in direct pathway muscarinic M4-receptor signaling follow the temporal and regional pattern of dopaminergic degeneration.

Journal: NPJ Parkinson's disease

Authors' code: StrowbridgeLab/Toronado-Laser-Scanning (no license)

Status: code verified, 14 files readable, 1 match

[15546] doi:10.1038/s41531-025-01052-6 [paper, data]

Parkinsonism disrupts cortical function by dysregulating oscillatory, network and synaptic activity of parvalbumin positive interneurons.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[15547] doi:10.1038/s41531-025-01054-4 [paper]

Effects of two types of repetitive transcranial magnetic stimulation on brain network in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[15548] doi:10.1038/s41586-025-09325-z [paper, repository]

Architecture, dynamics and biogenesis of GluA3 AMPA glutamate receptors.

Journal: Nature

Authors' code: prody/ProDy (MIT), 3dem/DynaMight (BSD-3-Clause)

Status: code verified, 382 files readable, 5 matches

[15549] doi:10.1038/s41597-025-05377-y [paper, repository]

Concurrent single-pulse TMS-fMRI dataset to reveal the causal connectome in healthy and patient populations.

Journal: Scientific data

Authors' code: braindynamicslab/sptmsfmri (MIT)

Status: code verified, 6 files readable, 4 matches

[15550] doi:10.1038/s41597-025-05403-z [paper, repository]

Multi-modal and Multi-view Cervical Spondylosis Imaging Dataset.

Journal: Scientific data

Authors' code: sjyzy/CSMD (no license)

Status: code verified, 4 files readable, 2 matches

[15551] doi:10.1038/s41597-025-05409-7 [paper, repository]

Coding and non-coding RNA expression in NSC34 cells following TDP-43 depletion and mutant TDP-43 M337V expression.

Journal: Scientific data

Authors' code: patterninstitute/tdp43.nat.sci.data (no license)

Status: code verified, 3 files readable, 2 matches

[15552] doi:10.1038/s41597-025-05414-w [paper, repository]

An fMRI Dataset on Occluded Image Interpretation for Human Amodal Completion Research.

Journal: Scientific data

Authors' code: openneuro:ds005226 (no license), Neptune0108l/OIID (no license)

Status: code verified, 7 files readable, 1 match

[15553] doi:10.1038/s41598-025-03457-y [paper]

Lesion to the vmPFC abolishes intentionality (mis)attribution in the Knobe effect.

Journal: Scientific reports

Status: code on request

[15554] doi:10.1038/s41598-025-03880-1 [paper]

STIED: a deep learning model for the spatiotemporal detection of focal interictal epileptiform discharges with MEG.

Journal: Scientific reports

Status: code on request

[15555] doi:10.1038/s41598-025-04379-5 [paper, data]

Integrating brain proteomes and genetics to identify novel risk genes in chronic widespread musculoskeletal pain.

Journal: Scientific reports

Status: data only, 2 datasets cited

[15556] doi:10.1038/s41598-025-04748-0 [paper, repository]

Eyes on hold: motion task difficulty jointly delays microsaccade and pupil responses.

Journal: Scientific reports

Authors' code: OSF ct9yx (no license)

Status: code verified

[15557] doi:10.1038/s41598-025-04969-3 [paper]

Brain structural features with functional priori to classify Parkinson's disease and multiple system atrophy using diagnostic MRI.

Journal: Scientific reports

Status: code on request

[15558] doi:10.1038/s41598-025-05009-w [paper, repository]

Lessons learned from RadiologyNET foundation models for transfer learning in medical radiology.

Journal: Scientific reports

Authors' code: AIlab-RITEH/RadiologyNET-TL-models (GPL-3.0)

Status: code verified, 79 files readable, 9 matches

[15559] doi:10.1038/s41598-025-05028-7 [paper, repository]

Enhanced schizophrenia detection using multichannel EEG and CAOA-RST-based feature selection.

Journal: Scientific reports

Authors' code: muhammadabrar78/Schizophrenia_enhanced (no license), Zenodo 15519645 (CC-BY-4.0)

Status: code verified, 14 files readable, 4 matches

[15560] doi:10.1038/s41598-025-05047-4 [paper, repository]

Investigating biological sex as a moderator of the association of nature exposure with brain health: a cross-sectional UK biobank analysis.

Journal: Scientific reports

Authors' code: dnanexus.gitbook.io/uk-biobank-rap (no license), nosedr/uk-biobank-nature-exposure-and-brain-health (no license)

Status: code verified, 1 file readable, 5 matches

[15561] doi:10.1038/s41598-025-05054-5 [paper]

Repurposing of CNS accumulating drugs Gemfibrozil and Doxylamine for enhanced sensitization of glioblastoma cells through modulation of autophagy.

Journal: Scientific reports

Status: data only

[15562] doi:10.1038/s41598-025-05320-6 [paper, repository]

Machine learning based on a generative adversarial tri-model.

Journal: Scientific reports

Authors' code: swang-libra/Generative_Adversarial_Tri-Model (no license)

Status: code verified, 22 files readable, 4 matches

[15563] doi:10.1038/s41598-025-05382-6 [paper, repository]

Intermingled representation of oral cavity in mouse trigeminal ganglion.

Journal: Scientific reports

Authors' code: pharmedku/trigeminal (no license)

Status: code verified

[15564] doi:10.1038/s41598-025-05388-0 [paper, data]

Region-specific roles of stress-activated protein kinase MKK7 in the developing and maturing murine brain.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15565] doi:10.1038/s41598-025-05423-0 [paper, data]

Towards decoding motor imagery from EEG signal using optimized back propagation neural network with honey badger algorithm.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15566] doi:10.1038/s41598-025-05653-2 [paper, data]

Impaired hippocampal circuit function underlying memory encoding and consolidation precede robust Aβ deposition in a mouse model of alzheimer's disease.

Journal: Scientific reports

Status: data only, 2 datasets cited

[15567] doi:10.1038/s41598-025-05734-2 [paper, data]

Brain glutamate and gamma-aminobutyric acid levels across COVID-19 lockdowns in patients with recurrent major depressive disorder and healthy individuals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15568] doi:10.1038/s41598-025-05756-w [paper, repository]

Contributions of the multiple demand network to emergent and skilled reading.

Journal: Scientific reports

Authors' code: OSF 3h5xu (no license)

Status: empty repository

[15569] doi:10.1038/s41598-025-06037-2 [paper]

Effects of subliminal emotional facial expressions on language comprehension as revealed by event-related brain potentials.

Journal: Scientific reports

Status: code on request

[15570] doi:10.1038/s41598-025-06121-7 [paper, data]

Schizophrenia detection from electroencephalogram signals using image encoding and wrapper-based deep feature selection approach.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15571] doi:10.1038/s41598-025-06201-8 [paper, data]

Diminished angiogenic capacity in the hippocampus compared to the cortex indicates regional vulnerability.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15572] doi:10.1038/s41598-025-06208-1 [paper, repository]

Predicting autism from written narratives using deep neural networks.

Journal: Scientific reports

Authors' code: alexwz/autism-essays (no license)

Status: code verified, 6 files readable, 5 matches

[15573] doi:10.1038/s41598-025-06306-0 [paper, data]

Mamba-fusion for privacy-preserving disease prediction.

Journal: Scientific reports

Status: data only, 4 datasets cited

[15574] doi:10.1038/s41598-025-06455-2 [paper, data]

Hybrid model integration with explainable AI for brain tumor diagnosis: a unified approach to MRI analysis and prediction.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15575] doi:10.1038/s41598-025-06741-z [paper, repository]

Generative AI for weakly supervised segmentation and downstream classification of brain tumors on MR images.

Journal: Scientific reports

Authors' code: IMICSLab/GenAI_WeaklySupervisedSegmentation_BrainTumor (BSD-3-Clause)

Status: code verified, 3 files readable, 4 matches

[15576] doi:10.1038/s41598-025-07032-3 [paper, repository]

Two-stage Mamba-based diffusion model for image restoration.

Journal: Scientific reports

Authors' code: swz30/restormer (MIT)

Status: code verified, 74 files readable, 5 matches

[15577] doi:10.1038/s41598-025-07049-8 [paper, data]

Eveningness and distinctness of the circadian rhythm in men are related to altered neural responses to gain and loss.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15578] doi:10.1038/s41598-025-07438-z [paper, data]

Improving EEG based brain computer interface emotion detection with EKO ALSTM model.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15579] doi:10.1038/s41598-025-07441-4 [paper, data]

High intensity interval training and selenium nanoparticles protect hippocampal neurons and enhance cognitive function in diabetic rats.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15580] doi:10.1038/s41598-025-07524-2 [paper, data]

Synergizing advanced algorithm of explainable artificial intelligence with hybrid model for enhanced brain tumor detection in healthcare.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15581] doi:10.1038/s41598-025-07787-9 [paper]

Mindfulness-based stress reduction intervention during pregnancy changes maternal brain.

Journal: Scientific reports

Status: code on request

[15582] doi:10.1038/s41598-025-07803-y [paper, repository]

A directionally evolved genomic feature in BRSK2 harbors divergent alleles in neurocognitive disorders.

Journal: Scientific reports

Authors' code: arabfard/Java_Di_STR_Finder (no license)

Status: empty repository, 1 file readable

[15583] doi:10.1038/s41598-025-07809-6 [paper, data]

Morphometric analysis of peripheral nerves in people with spinal cord injury.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15584] doi:10.1038/s41598-025-07815-8 [paper, data]

CRISPR-Cas9 screening identifies a gene signature predictive of prognosis in glioblastoma.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15585] doi:10.1038/s41598-025-07959-7 [paper, data]

Genetic effect on working memory activation pattern and structural properties of cortical gray matter.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15586] doi:10.1038/s41598-025-08143-7 [paper, data]

Post-mortem human Alzheimer´s brain metallome depends on Braak stages and brain regions.

Journal: Scientific reports

Status: data only, 2 datasets cited

[15587] doi:10.1038/s41598-025-08345-z [paper, data]

A bitopic mTORC inhibitor reverses phenotypes in a tuberous sclerosis complex model.

Journal: Scientific reports

Status: data only, 2 datasets cited

[15588] doi:10.1038/s41598-025-08467-4 [paper, repository]

Artificial sweeteners differentially activate sweet and bitter gustatory neurons in Drosophila.

Journal: Scientific reports

Authors' code: MStanleyLab/FLIC_code (MIT)

Status: code verified, 5 files readable

[15589] doi:10.1038/s41598-025-08633-8 [paper, repository]

Causal effects of brain subregion gene expression on inflammatory bowel diseases revealed by Mendelian randomization and single cell analysis.

Journal: Scientific reports

Authors' code: LjLiu-nj/eQTL_Brain2IBD (no license)

Status: code verified, 7 files readable, 7 matches

[15590] doi:10.1038/s41598-025-09311-5 [paper, data]

Hybrid transfer learning and self-attention framework for robust MRI-based brain tumor classification.

Journal: Scientific reports

Status: data only, 2 datasets cited

[15591] doi:10.1038/s41598-025-99599-0 [paper, repository]

Differential modulation of low- and high-frequency mu oscillations during the observation of manual, facial, and non-biological movements.

Journal: Scientific reports

Authors' code: OSF yajkz (no license)

Status: empty repository

[15592] doi:10.1038/s42003-025-08297-0 [paper, repository]

Higher dopamine D1 receptor expression in prefrontal parvalbumin neurons underlies higher distractibility in marmosets versus macaques.

Journal: Communications biology

Authors' code: tsvet-ivanov/marm-mac-D1R (no license)

Status: code verified, 5 files readable, 6 matches

[15593] doi:10.1038/s42003-025-08342-y [paper, repository]

Nascent actin dynamics and the disruption of calcium dynamics by actin arrest in developing neural cell networks.

Journal: Communications biology

Authors' code: SJG3/Coupled-Biomechanical-and-Ionic-Excitability-in-Developing-Neural-Cell-Networks_Code-Availability (GPL-3.0)

Status: code verified, 4 files readable, 3 matches

[15594] doi:10.1038/s42003-025-08368-2 [paper, repository]

Opposing role of phagocytic receptors MERTK and AXL in Progranulin deficient FTD.

Journal: Communications biology

Authors' code: lifan36/Clelland-Fan-FTD-2023 (no license), Zenodo 14941325 (CC-BY-4.0)

Status: code verified, 17 files readable, 3 matches

[15595] doi:10.1038/s42003-025-08371-7 [paper, repository]

Site- and cell-type-specific miRNA and mRNA genes and networks across the cortex, striatum, and hypothalamus.

Journal: Communications biology

Authors' code: ComputationalGenomicsLaboratory/chronoCNS (no license)

Status: code verified, 181 files readable, 10 matches

[15596] doi:10.1038/s42003-025-08431-y [paper, repository]

Direct excitatory loop and theta resonance in the anterior cingulate-mediodorsal thalamic circuit.

Journal: Communications biology

Authors' code: figshare 29362343 (CC0-1.0)

Status: code verified, 16 files readable, 2 matches

[15597] doi:10.1038/s42255-025-01321-x [paper, data]

Triglycerides are an important fuel reserve for synapse function in the brain.

Journal: Nature metabolism

Status: data only, 5 datasets cited

[15598] doi:10.1073/pnas.2414674122 [paper, repository]

Learning predictive signals within a local recurrent circuit.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: TAsabuki/prediction_error (no license)

Status: code verified, 2 files readable

[15599] doi:10.1073/pnas.2422069122 [paper, data]

Cerebral blood flow is modulated by astrocytic cAMP elevation independently of IP<sub>3</sub>R2-mediated Ca<sup>2+</sup> signaling in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[15600] doi:10.1080/19768354.2025.2519018 [paper, data]

Holoprosencephaly and cyclopia in <i>bmp7b</i> and <i>bmpr1ba</i> Crispant zebrafish.

Journal: Animal cells and systems

Status: data only, 1 dataset cited

[15601] doi:10.1093/bib/bbaf316 [paper, repository]

TriCLFF: a multi-modal feature fusion framework using contrastive learning for spatial domain identification.

Journal: Briefings in bioinformatics

Authors' code: LieberInstitute/HumanPilot (Artistic-2.0), HBZZ168/TriCLFF (MIT)

Status: code verified, 98 files readable, 9 matches

[15602] doi:10.1093/bib/bbaf348 [paper, repository]

MetaGeno: a chromosome-wise multi-task genomic framework for ischaemic stroke risk prediction.

Journal: Briefings in bioinformatics

Authors' code: cireyy/genomic-transformer (no license)

Status: code verified, 7 files readable, 1 match

[15603] doi:10.1093/bib/bbaf365 [paper, repository]

Path-MGCN: a pathway activity-based multi-view graph convolutional network for determining spatial domains.

Journal: Briefings in bioinformatics

Authors' code: gdut-zqr/Path-MGCN (MIT)

Status: code verified, 8 files readable, 1 match

[15604] doi:10.1093/bib/bbaf366 [paper, repository]

NeuroFANN: identification of neuropathological subtypes in dementia with plasma proteins by using functionally annotated neural network.

Journal: Briefings in bioinformatics

Authors' code: sunghongpark-ai/NeuroFANN (no license)

Status: code verified, 49 files readable

[15605] doi:10.1093/bib/bbaf372 [paper, repository]

ConvNTC: convolutional neural tensor completion for detecting "A-A-B" type biological triplets.

Journal: Briefings in bioinformatics

Authors' code: Liangyushi/ConvNTC (no license)

Status: code verified, 29 files readable

[15606] doi:10.1093/bib/bbaf427 [paper, repository]

Guidance for the design and analysis of cell-type-specific DNA methylation epidemiology studies.

Journal: Briefings in bioinformatics

Authors' code: ejh243/BrainFANS (Artistic-2.0), ew367/cellpower (GPL-3.0)

Status: code verified, 240 files readable, 9 matches

[15607] doi:10.1093/bioinformatics/btaf198 [paper, repository]

NEAR: neural embeddings for amino acid relationships.

Journal: Bioinformatics (Oxford, England)

Authors' code: TravisWheelerLab/NEAR (BSD-3-Clause)

Status: code verified, 16 files readable, 4 matches

[15608] doi:10.1093/bioinformatics/btaf242 [paper, repository]

Anomaly detection in spatial transcriptomics via spatially localized density comparison.

Journal: Bioinformatics (Oxford, England)

Authors' code: raphael-group/spatial_anomaly_detection (MIT)

Status: code verified, 4 files readable

[15609] doi:10.1093/bioinformatics/btaf254 [paper, repository]

GASTON-Mix: a unified model of spatial gradients and domains using spatial mixture-of-experts.

Journal: Bioinformatics (Oxford, England)

Authors' code: raphael-group/GASTON-Mix (BSD-3-Clause)

Status: code verified, 30 files readable, 3 matches

[15610] doi:10.1093/bioinformatics/btaf339 [paper, repository]

SpyDen: simplifying molecular and structural analysis across spines and dendrites.

Journal: Bioinformatics (Oxford, England)

Authors' code: gin.g-node.org/compneuronetworks/spydentrainednetwork (no license)

Status: code verified

[15611] doi:10.1093/brain/awaf103 [paper, data]

Modulating inhibitory synaptic plasticity to restore basal ganglia dynamics in Parkinson's disease.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[15612] doi:10.1093/brain/awaf158 [paper, repository]

Common neuropathologic change drivers of hippocampal sclerosis of ageing.

Journal: Brain : a journal of neurology

Authors' code: OSF 6yuek (no license)

Status: code verified, 9 files readable, 11 matches

[15613] doi:10.1093/cercor/bhaf153 [paper, repository]

Musicians' brains at rest: multilayer network analysis of magnetoencephalography data.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: jilmeier/multilayer-musicians (no license)

Status: code verified, 9 files readable, 8 matches

[15614] doi:10.1093/cercor/bhaf181 [paper, repository]

Dynamic changes in electrical brain activity during passive learning of foreign speech sound discrimination.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: AsophiliaChance/Passive-exposure-learning-dynamic (no license)

Status: code verified, 8 files readable, 4 matches

[15615] doi:10.1093/g3journal/jkaf079 [paper, repository]

Targeted single cell expression profiling identifies integrators of sleep and metabolic state.

Journal: G3 (Bethesda, Md.)

Authors' code: maxwellshih1/targeted-scRNAseq (no license)

Status: code verified, 3 files readable, 4 matches

[15616] doi:10.1093/g3journal/jkaf099 [paper, repository]

Systems genetics reveals the influence of expression QTLs in mouse embryonic stem cells on transcriptional variation later in differentiated neural progenitor cells.

Journal: G3 (Bethesda, Md.)

Authors' code: simecek/intermediate (no license)

Status: code verified, 8 files readable, 1 match

[15617] doi:10.1093/g3journal/jkaf115 [paper, repository]

Disrupted development of sensory systems and the cerebellum in a zebrafish ebf3a mutant.

Journal: G3 (Bethesda, Md.)

Authors' code: thymelab/ZebrafishBehavior (MIT), thymelab/DownstreamAnalysis (MIT), thymelab (no license)

Status: code verified, 31 files readable, 5 matches

[15618] doi:10.1093/intqhc/mzaf087 [paper]

Controlling nosocomial transmission of respiratory infections in neurological wards: insights from COVID-19 pandemic data.

Journal: International journal for quality in health care : journal of the International Society for Quality in Health Care

Status: code on request

[15619] doi:10.1093/molbev/msaf179 [paper, repository]

Convergent Molecular Evolution Associated With Repeated Transitions to Gregarious Larval Behavior in Heliconiini.

Journal: Molecular biology and evolution

Authors' code: francicco/-ConvergentMolEvolutionGregLarvalBehaviour (no license)

Status: code verified, 3 files readable, 4 matches

[15620] doi:10.1093/nar/gkaf597 [paper, repository]

Telomeric repeat-containing RNA increases in aged human cells.

Journal: Nucleic acids research

Authors' code: ls807terra/TERRA_RNA-seq_pipeline (MIT), Zenodo 15598541 (MIT), ls807terra/terra-quant (MIT)

Status: code verified, 63 files readable, 9 matches

[15621] doi:10.1093/nar/gkaf650 [paper, repository]

BAHCC1 promotes gene expression in neuronal cells by antagonizing SIN3A-HDAC1.

Journal: Nucleic acids research

Authors' code: Lexogen-Tools/corall_analysis (MIT)

Status: code verified, 8 files readable, 1 match

[15622] doi:10.1093/nar/gkaf714 [paper, repository]

A cluster-based cell-type deconvolution of spatial transcriptomic data.

Journal: Nucleic acids research

Authors' code: Qingyueee/DECLUST (GPL-3.0), figshare 28945493 (CC-BY-4.0)

Status: code verified, 32 files readable, 2 matches

[15623] doi:10.1093/nar/gkaf722 [paper, repository]

SMUG1 DNA glycosylase modulates reward behaviour through regulation of olfactory receptor gene expression.

Journal: Nucleic acids research

Authors' code: bicrolab/blissnpanalysis (MIT)

Status: code verified, 4 files readable

[15624] doi:10.1093/narmme/ugaf022 [paper, data]

MiR-7a-Klf4 axis as a regulator and therapeutic target of neuroinflammation and ferroptosis in Alzheimer's disease.

Journal: NAR molecular medicine

Status: data only, 1 dataset cited

[15625] doi:10.1093/neuonc/noaf015 [paper, repository]

The clinical and molecular landscape of diffuse hemispheric glioma, H3 G34-mutant.

Journal: Neuro-oncology

Authors' code: mwsill/conumee (no license), jkrijthe/Rtsne (BSD-3-Clause)

Status: code verified, 27 files readable

[15626] doi:10.1093/neuonc/noaf026 [paper, repository]

GBMPurity: A machine learning tool for estimating glioblastoma tumor purity from bulk RNA-sequencing data.

Journal: Neuro-oncology

Authors' code: scmpht/GBMPurity (MIT)

Status: code verified, 7 files readable, 4 matches

[15627] doi:10.1093/neuonc/noaf045 [paper, data]

Targeting PGE2 mediated senescent neuron improves tumor therapy.

Journal: Neuro-oncology

Status: data only, 3 datasets cited

[15628] doi:10.1093/neuonc/noaf058 [paper, repository]

Applications of artificial intelligence and advanced imaging in pediatric diffuse midline glioma.

Journal: Neuro-oncology

Authors' code: reghbali/pyalfe (BSD-3-Clause)

Status: code verified, 40 files readable

[15629] doi:10.1093/sleep/zsaf114 [paper, repository]

Human sleep spindles track experimentally excited brain circuits.

Journal: Sleep

Authors' code: OSF 8cnxf (no license)

Status: code verified, 8 files readable, 3 matches

[15630] doi:10.1093/stmcls/sxaf029 [paper, repository]

Cerulenin partially corrects the disrupted developmental transcriptomic signature in Huntington's disease striatal medium spiny neurons.

Journal: Stem cells (Dayton, Ohio)

Authors' code: gerencserlab/IA-Protein-Aggregates (MIT)

Status: empty repository, 2 files readable

[15631] doi:10.1096/fj.202500686rr [paper, data]

Vasopressin-Sensitive Aqp2 Regulation Mediated by the TAZ-NR4A1 Axis in Renal Collecting Duct Cells.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[15632] doi:10.1097/md.0000000000043483 [paper, data]

Prediction of biomarkers for brain metastasis in nonsmall cell lung cancer based on transcriptome sequencing.

Journal: Medicine

Status: data only, 1 dataset cited

[15633] doi:10.1101/gad.352555.124 [paper, repository]

Epigenetic priming of neural progenitors by Notch enhances Sonic hedgehog signaling and establishes gliogenic competence.

Journal: Genes & development

Authors' code: luulintran/notch_shh_manuscript (MIT)

Status: code verified, 60 files readable, 15 matches

[15634] doi:10.1101/gad.352632.125 [paper, repository]

TEAD switches interacting partners along neural progenitor lineage progression to execute distinct functions.

Journal: Genes & development

Authors' code: thecaolab-stjude/subpallium_development_Tead_and_YT_KO (MIT)

Status: empty repository, 2 files readable

[15635] doi:10.1101/gr.279716.124 [paper]

An iPSC-based model of 47,XYY Jacobs syndrome reveals a DNA methylation-independent transcriptional dysregulation shared with male X aneuploid cells.

Journal: Genome research

Status: data only

[15636] doi:10.1101/gr.280305.124 [paper, repository]

Tissular chromatin-state cartography based on double-barcoded DNA arrays that capture unloaded PA-Tn5 transposase.

Journal: Genome research

Authors' code: SysFate/SysISTD (AGPL-3.0), SysFate/SysISPD (no license)

Status: code verified, 13 files readable, 2 matches

[15637] doi:10.1111/cns.70399 [paper, data]

S-Propargyl-Cysteine Attenuates Stroke Heterogeneity via Promoting Protective Autophagy Across Multiple Neural Cell Types: Insights From Single-Cell Sequencing.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[15638] doi:10.1111/desc.70037 [paper]

The Neural Reality of Pitch Chroma in Early Infancy.

Journal: Developmental science

Status: code on request

[15639] doi:10.1111/ejn.70194 [paper, repository]

The Effects of External Cue Overlap and Internal Goals on Selective Memory Retrieval as Revealed by Electroencephalographic (EEG) Neural Pattern Reinstatement.

Journal: The European journal of neuroscience

Authors' code: OSF ywt4g (no license), OSF erjdu (no license), OSF dnz9e (no license)

Status: code verified, 24 files readable, 12 matches

[15640] doi:10.1111/infa.70029 [paper, data]

Hold on Tight! Linking Emotions and Actions in the Infant Brain.

Journal: Infancy : the official journal of the International Society on Infant Studies

Status: data only, 1 dataset cited

[15641] doi:10.1111/jnc.70152 [paper, repository]

Label-Free Proteomic Profiling of the dvls2 (CL2006) Caenorhabditis elegans Alzheimer's Disease (AD) Model Reveals Conserved Molecular Signatures Shared With the Human AD Brain.

Journal: Journal of neurochemistry

Authors' code: Conradoou/Proteomics (no license)

Status: dead link

[15642] doi:10.1111/psyp.70096 [paper]

Neuroaffective Processing of Sexually Relevant Images in Hetero- and Homosexual Women and Men: Subjective, Pupillometric, and Magnetoencephalographic Correlates.

Journal: Psychophysiology

Status: code on request

[15643] doi:10.1111/psyp.70099 [paper, repository]

Early and Late ERP Correlates of Conscivousness- A Direct Comparison Between Visual and Auditory Modalities.

Journal: Psychophysiology

Authors' code: OSF 8q7su (no license)

Status: empty repository

[15644] doi:10.1111/psyp.70102 [paper, repository]

A Negative Reputation Reduces Trust Despite Trustworthy Behavior.

Journal: Psychophysiology

Authors' code: OSF 85q4u (no license)

Status: empty repository

[15645] doi:10.1111/psyp.70107 [paper, repository]

Electrophysiological and Behavioral Responses to Overinclusion Following Preexposure to Social Threat.

Journal: Psychophysiology

Authors' code: OSF qpajf (no license)

Status: code verified, 9 files readable, 2 matches

[15646] doi:10.1111/psyp.70113 [paper, data]

Active Inference in Music Perception: Motor Engagement to Syncopation Modulates Rhythmic Prediction Error.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[15647] doi:10.1117/1.nph.12.3.035004 [paper]

Combined optical coherence tomography and electroretinography system for imaging neurovascular coupling in the human retina.

Journal: Neurophotonics

Status: code on request

[15648] doi:10.1117/1.nph.12.3.035008 [paper]

Cerebral blood flow monitoring using a deep learning implementation of the two-layer diffuse correlation spectroscopy analytical model with a 512 × 512 SPAD array.

Journal: Neurophotonics

Status: code on request

[15649] doi:10.1117/1.nph.12.3.035009 [paper, data]

Functional near-infrared spectroscopy short-channel regression improves cortical activation estimates of working memory load.

Journal: Neurophotonics

Status: code on request, 1 dataset cited

[15650] doi:10.1117/1.nph.12.3.035010 [paper, repository]

High-density multidistance fNIRS enhances detection of brain activity during a word-color Stroop task.

Journal: Neurophotonics

Authors' code: andersonjessie/WordColorStroop (no license)

Status: empty repository, 1 file readable

[15651] doi:10.1117/1.nph.12.3.035012 [paper]

Functional specialization for language processing in inferior frontal regions during early childhood: evidence from functional near-infrared spectroscopy individual functional channels of interest approach.

Journal: Neurophotonics

Status: code on request

[15652] doi:10.1117/1.nph.12.3.035013 [paper, data]

Maternal anxiety shapes prediction error responses in the infant brain.

Journal: Neurophotonics

Status: data only, 1 dataset cited

[15653] doi:10.1117/1.nph.12.3.035014 [paper, repository]

Depth-resolved fiber photometry of amyloid plaque signals in freely behaving Alzheimer's disease mice.

Journal: Neurophotonics

Authors' code: vsnnlab/AMaSiNe (no license)

Status: code verified, 16 files readable

[15654] doi:10.1117/1.nph.12.3.035016 [paper, repository]

Brain network evolution in late preterm to term infants: a near-infrared spectroscopy imaging study.

Journal: Neurophotonics

Authors' code: OSF 9jnfd (no license)

Status: code verified, 4 files readable, 1 match

[15655] doi:10.1117/1.nph.12.3.035017 [paper]

Longitudinal changes in frontopolar cortex activity during postural tasks in collegiate ice hockey athletes.

Journal: Neurophotonics

Status: code on request

[15656] doi:10.1128/jvi.00937-25 [paper, data]

Pathological characteristics of a murine oral coxsackievirus A10 infection model.

Journal: Journal of virology

Status: data only, 1 dataset cited

[15657] doi:10.1158/1535-7163.mct-25-0025 [paper, data]

Zidesamtinib Selective Targeting of Diverse ROS1 Drug-Resistant Mutations.

Journal: Molecular cancer therapeutics

Status: data only, 1 dataset cited

[15658] doi:10.1162/neco_a_01769 [paper, repository]

Predictive Coding Model Detects Novelty on Different Levels of Representation Hierarchy.

Journal: Neural computation

Authors' code: ltjed/novelty-detection-pc (no license)

Status: code verified, 30 files readable, 7 matches

[15659] doi:10.1167/jov.25.8.10 [paper, repository]

Function over form: The temporal evolution of affordance-based scene categorization.

Journal: Journal of vision

Authors' code: OSF wcthf (no license)

Status: code verified, 12 files readable, 2 matches

[15660] doi:10.1167/jov.25.8.16 [paper, repository]

The racer's gaze: Visual strategy in high-speed sports expertise.

Journal: Journal of vision

Authors' code: OSF qcu7t (no license)

Status: code verified

[15661] doi:10.1167/jov.25.8.17 [paper, repository]

Ocular drift shakes the stationary view on pattern vision.

Journal: Journal of vision

Authors' code: computational-psychology/schmittwilken2025_edge-comparison (no license)

Status: code verified, 34 files readable, 5 matches

[15662] doi:10.1167/jov.25.8.2 [paper, data]

Concurrent emergence of view invariance, sensitivity to critical features, and identity face classification through visual experience: Insights from deep learning algorithms.

Journal: Journal of vision

Status: data only, 1 dataset cited

[15663] doi:10.1167/jov.25.8.9 [paper, repository]

Computational evidence for an inverse relationship between retinal and brain complexity.

Journal: Journal of vision

Authors' code: mitchellslapik/retina (no license)

Status: code verified, 20 files readable, 5 matches

[15664] doi:10.1172/jci185000 [paper, data]

Mitofusin 2 controls mitochondrial and synaptic dynamics of suprachiasmatic VIP neurons and related circadian rhythms.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[15665] doi:10.1177/20552173251361225 [paper, repository]

Diffusion tensor imaging in the SPRINT-MS clinical trial: Advancing trial methodology.

Journal: Multiple sclerosis journal - experimental, translational and clinical

Authors' code: QMICodeBase/TORTOISEV4 (GPL-3.0)

Status: code verified, 159 files readable, 2 matches

[15666] doi:10.1186/s12711-025-00981-3 [paper, repository]

Multiple cell types guided by neurocytes orchestrate horn bud initiation in dairy goats.

Journal: Genetics, selection, evolution : GSE

Authors' code: velocyto-team/velocyto.R (no license)

Status: code verified, 6 files readable, 1 match

[15667] doi:10.1186/s12864-025-11725-4 [paper, data]

Circular RNA expression in ALS is progressively deregulated and tissue-dependent.

Journal: BMC genomics

Status: data only, 1 dataset cited

[15668] doi:10.1186/s12873-025-01242-8 [paper, repository]

Modelling the potential clinical benefit of mobile stroke units in England.

Journal: BMC emergency medicine

Authors' code: stroke-modelling/muster2 (MIT), samuel-book/stroke_outcome (MIT)

Status: code verified, 78 files readable, 5 matches

[15669] doi:10.1186/s12880-025-01801-2 [paper, data]

Glymphatic and neurofluidic dysfunction in classical trigeminal neuralgia: a multimodal MRI study of brain-CSF functional and structural dynamics.

Journal: BMC medical imaging

Status: data only, 1 dataset cited

[15670] doi:10.1186/s12885-025-14466-5 [paper]

Deep learning radiomics and mediastinal adipose tissue-based nomogram for preoperative prediction of postoperative‌ brain metastasis risk in non-small cell lung cancer.

Journal: BMC cancer

Status: code on request

[15671] doi:10.1186/s12915-025-02224-9 [paper, data]

doc2a and doc2b contribute to locomotor and social behaviors by down-regulating npas4b in zebrafish.

Journal: BMC biology

Status: data only, 1 dataset cited

[15672] doi:10.1186/s12915-025-02293-w [paper]

Development and characterization of a fully humanized ACE2 mouse model.

Journal: BMC biology

Status: data only

[15673] doi:10.1186/s12915-025-02296-7 [paper, data]

Construction of the graph genomes of Takifugu provides novel insights into the genomic mechanisms of population structure and migratory traits.

Journal: BMC biology

Status: data only, 10 datasets cited

[15674] doi:10.1186/s12915-025-02306-8 [paper, data]

Brain miR-137 governs growth and development via GH/IGF-1 signaling.

Journal: BMC biology

Status: data only, 1 dataset cited

[15675] doi:10.1186/s12964-025-02313-w [paper, data]

Behavioral assessment and gene expression changes in a mouse model with dysfunctional STAT1 signaling.

Journal: Cell communication and signaling : CCS

Status: data only, 2 datasets cited

[15676] doi:10.1186/s13023-025-03868-0 [paper, data]

A novel TIMM8A mutation in Mohr-Tranebjaerg syndrome without hearing loss and with basal ganglia iron deposition.

Journal: Orphanet journal of rare diseases

Status: data only, 1 dataset cited

[15677] doi:10.1186/s13041-025-01230-w [paper, repository]

The medial prefrontal cortex encodes procedural rules as sequential neuronal activity dynamics.

Journal: Molecular brain

Authors' code: FeeLab/seqNMF (MIT), IdlingBrainUT/Ohno_iSeq (MIT)

Status: code verified, 81 files readable, 1 match

[15678] doi:10.1186/s13293-025-00728-1 [paper, repository]

A cross-species analysis of neuroanatomical covariance sex differences in humans and mice.

Journal: Biology of sex differences

Authors' code: CoBrALab/optimized_antsMultivariateTemplateConstruction (other), phamlk/cross-species-covariance-sex-differences (no license)

Status: code verified, 68 files readable, 6 matches

[15679] doi:10.1371/journal.pbio.3003248 [paper, repository]

Altered auditory feature discrimination in a rat model of Fragile X Syndrome.

Journal: PLoS biology

Authors' code: Zenodo 15559344 (MIT), electro-phys/tone_discrim_2025 (MIT)

Status: code verified, 12 files readable

[15680] doi:10.1371/journal.pone.0325979 [paper, repository]

A sticky Poisson Hidden Markov Model for solving the problem of over-segmentation and rapid state switching in cortical datasets.

Journal: PloS one

Authors' code: lacameralab/HMM-spikes (no license)

Status: code verified, 31 files readable, 9 matches

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