Every paper, by date: page 71

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 71 of 200: 1 July 2025 to 23 June 2025.

Tuesday, 1 July 2025 (251 papers, 11 on this page)

[15681] doi:10.21873/invivo.14000 [paper, data]

NeuroD2 Modulates Hippocampal Neuronal Organization and Axon Guidance During Aging.

Journal: In vivo (Athens, Greece)

Status: data only, 2 datasets cited

[15682] doi:10.24272/j.issn.2095-8137.2025.016 [paper, data]

<i>Lycium barbaru</i>m glycopeptide ameliorates aberrant neuronal activity via ER stress modulation in ventral forebrain organoids derived from depressive patients.

Journal: Zoological research

Status: data only, 1 dataset cited

[15683] doi:10.3389/fnhum.2025.1589440 [paper, data]

Salience and default networks predict borderline personality traits and affective symptoms: a dynamic functional connectivity analysis.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[15684] doi:10.3724/abbs.2025070 [paper, data]

Schisandrin A ‌ameliorates the diabetes-associated memory impairment by alleviating inflammation and ferroptosis.

Journal: Acta biochimica et biophysica Sinica

Status: data only, 1 dataset cited

[15685] doi:10.3748/wjg.v31.i27.109239 [paper, data]

Translocator protein facilitates neutrophil-mediated mucosal inflammation in inflammatory bowel diseases.

Journal: World journal of gastroenterology

Status: data only, 1 dataset cited

[15686] doi:10.3758/s13415-025-01323-y [paper, repository]

Sleepiness but neither fluid nor crystallized intelligence can be predicted from resting-state electroencephalography - Evidence from the large scale CoScience EEG-Personality Project.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF g89b2 (no license), christoph1212/MVPA_IQ (no license)

Status: code verified, 182 files readable, 7 matches

[15687] doi:10.3758/s13415-025-01325-w [paper, repository]

Stimulus-specific influence of gender on mental-rotation-related brain activity.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: cbedetti/Dcm2Bids (GPL-3.0), nadiaBRS/Stimulus-specific-influence-of-gender-on-mental-rotation-related-brain-activity (no license)

Status: code verified, 34 files readable, 2 matches

[15688] doi:10.4239/wjd.v16.i7.104424 [paper]

Altered hippocampal subfield volumes are associated with memory and executive function in patients with type 2 diabetes mellitus.

Journal: World journal of diabetes

Status: code on request

[15689] doi:10.5281/zenodo.15644226 [paper, repository]

[Comment on the article: "Cognition in pediatric patients with diagnosis of epilepsy"].

Journal: Revista medica del Instituto Mexicano del Seguro Social

Authors' code: Zenodo 10998749 (CC-BY-4.0)

Status: empty repository

[15690] doi:10.7554/elife.89929 [paper, repository]

A neuromorphic model of active vision shows how spatiotemporal encoding in lobula neurons can aid pattern recognition in bees.

Journal: eLife

Authors' code: hadiimaboudi/Insect-Inspired-Neuromorphic-Model-for-Active-Vision (MIT)

Status: code verified, 34 files readable

[15691] doi:10.7717/peerj.19548 [paper, data]

Interictal neural fragility predicts seizure onset zone and surgical outcomes in drug-resistant epilepsy.

Journal: PeerJ

Status: data only, 1 dataset cited

Monday, 30 June 2025 (35 papers)

[15692] doi:10.1002/advs.202503017 [paper, repository]

Parvalbumin Interneuron-Dependent Hippocampal Neurogenesis Evoked by Prolonged Rhythmic Light Flicker.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: djamesbarker/pMAT (GPL-3.0)

Status: code verified, 35 files readable, 5 matches

[15693] doi:10.1007/s12035-025-05171-2 [paper]

UQCRC1 is a Key Pathogenic Determinant and Potential Therapeutic Target for Cognitive Impairment in Alzheimer's Disease.

Journal: Molecular neurobiology

Status: data only

[15694] doi:10.1016/j.xpro.2025.103915 [paper, repository]

Protocol for generating and using human iPSC-derived microglia-containing air-liquid-interface cortical organoid cultures.

Journal: STAR protocols

Authors' code: junzhanj/HEKADatConverter (MIT)

Status: code verified, 6 files readable

[15695] doi:10.1017/s0033291725100585 [paper, data]

Transcranial magnetic stimulation to left VLPFC or right DLPFC promotes forgetting in working memory.

Journal: Psychological medicine

Status: data only, 1 dataset cited

[15696] doi:10.1017/s0033291725100779 [paper]

Parental psychopathology, family conflict, brain function, and child autistic-like traits in early adolescents.

Journal: Psychological medicine

Status: code on request

[15697] doi:10.1021/acs.biochem.5c00260 [paper, data]

A Disease-Associated Mutation Impedes PPIA through Allosteric Dynamics Modulation.

Journal: Biochemistry

Status: data only, 1 dataset cited

[15698] doi:10.1038/s41467-025-61064-x [paper, repository]

EEG-based brain-computer interface enables real-time robotic hand control at individual finger level.

Journal: Nature communications

Authors' code: bfinl/Finger-BCI-Decoding (MIT)

Status: code verified, 6 files readable, 3 matches

[15699] doi:10.1038/s44318-025-00499-w [paper, data]

Temperature-dependent modulation of light-induced circadian responses in Drosophila melanogaster.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[15700] doi:10.1073/pnas.2502021122 [paper, repository]

Action-mode subnetworks for decision-making, action control, and feedback.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: neuro-data-science/neuro_data_science (GPL-3.0), DosenbachGreene (no license), cjl2007/Liston-Laboratory-MultiEchofMRI-Pipeline (no license), DosenbachGreene/SCAN (no license)

Status: code verified, 190 files readable, 4 matches

[15701] doi:10.1073/pnas.2502024122 [paper, data]

Axonal pathology differentially affects human Purkinje cell subpopulations in the essential tremor cerebellum.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[15702] doi:10.1073/pnas.2510012122 [paper, repository]

Patchy harmonic functional connectivity of the mouse auditory cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: archive.data.jhu.edu (no license)

Status: code found, still to be checked

[15703] doi:10.1080/21623945.2025.2524638 [paper, data]

Electroacupuncture stimulation induced M1/M2 polarization in white adipose tissues by activating the Y1 receptor in obese mice to reduce chronic inflammation.

Journal: Adipocyte

Status: data only, 1 dataset cited

[15704] doi:10.1093/braincomms/fcaf259 [paper, data]

Sink-index: a network-based EEG marker for frontotemporal dementia and Alzheimer's disease.

Journal: Brain communications

Status: data only, 2 datasets cited

[15705] doi:10.1093/braincomms/fcaf260 [paper, repository]

Motor network organization in healthy development and chronic tic disorders.

Journal: Brain communications

Authors' code: crc1451.uni-koeln.de (no license), fil.ion.ucl.ac.uk/spm/data (no license)

Status: code verified

[15706] doi:10.1111/bpa.70023 [paper, data]

Multi-pronged analysis of pediatric low-grade glioma and ganglioglioma reveals a unique tumor microenvironment associated with BRAF alterations.

Journal: Brain pathology (Zurich, Switzerland)

Status: data only, 1 dataset cited

[15707] doi:10.1111/bpa.70029 [paper, repository]

Pediatric brain tumor classification using digital pathology and deep learning: Evaluation of SOTA methods on a multi-center Swedish cohort.

Journal: Brain pathology (Zurich, Switzerland)

Authors' code: mahmoodlab/UNI (CC-BY-NC-ND-4.0), mahmoodlab/CONCH (CC-BY-NC-ND-4.0), mahmoodlab/CLAM (GPL-3.0)

Status: code verified, 76 files readable, 7 matches

[15708] doi:10.1111/epi.18521 [paper, repository]

The impact of EEG preprocessing parameters on ultra-low-power seizure detection.

Journal: Epilepsia

Authors' code: reispat/impact_preproc_seizure_detection (MIT)

Status: code verified, 9 files readable, 2 matches

[15709] doi:10.1111/jmi.13436 [paper, repository]

A workflow for semi-automated volume correlative light microscopy and transmission electron tomography.

Journal: Journal of microscopy

Authors' code: jburrone/Konishi_Burrone_2025 (MIT), ebi.ac.uk/empiar/empiar-12850 (no license)

Status: code verified, 21 files readable, 1 match

[15710] doi:10.1128/mbio.00835-25 [paper, repository]

Codevelopment of gut microbial metabolism and visual neural circuitry over human infancy.

Journal: mBio

Authors' code: Zenodo 13625448 (CC-BY-4.0), klepac-ceraj-lab/eegmicrobiome (no license)

Status: code verified, 43 files readable, 7 matches

[15711] doi:10.1136/svn-2024-003509 [paper, data]

Exosomes-mediated delivery of miR-486-3p alleviates neuroinflammation via SIRT2-mediated inhibition of mitophagy after subarachnoid hemorrhage.

Journal: Stroke and vascular neurology

Status: data only, 1 dataset cited

[15712] doi:10.1162/netn_a_00454 [paper, repository]

Directionality of neural activity in and out of the seizure onset zone in focal epilepsy.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: HamidKarimi-Rouzbahani/Intracranial_epilepsy_connectivity (no license)

Status: code verified, 10 files readable, 3 matches

[15713] doi:10.1177/13872877251352119 [paper, data]

Electroencephalogram features support the retrogenesis hypothesis of Alzheimer's disease: Exploratory comparison of brain changes in aging and childhood.

Journal: Journal of Alzheimer's disease : JAD

Status: data only, 2 datasets cited

[15714] doi:10.1186/s12974-025-03481-9 [paper, data]

EphB2-mediated ephrin-B reverse signaling on microglia drives an anti-viral, but inflammatory and neurotoxic response associated with HIV.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[15715] doi:10.1186/s13073-025-01498-6 [paper, data]

The CXCL16/CXCR6 axis is linked to immune effector cell-associated neurotoxicity in chimeric antigen receptor (CAR) T cell therapy.

Journal: Genome medicine

Status: data only, 3 datasets cited

[15716] doi:10.1371/journal.pbio.3003259 [paper, data]

Gnb5 is a negative regulator of the BACE1-mediated Aβ generation and ameliorates cognitive deficits in a mouse model of Alzheimer's disease.

Journal: PLoS biology

Status: data only, 1 dataset cited

[15717] doi:10.1371/journal.pcbi.1012883 [paper, repository]

Investigate channel rectifications and neural dynamics by an electrodiffusive Gauss-Nernst-Planck approach.

Journal: PLoS computational biology

Authors' code: ND-ED/electrodiffusive-GNP-model-data (no license), ND-ED/electrodiffusive-GNP-model (no license)

Status: code verified, 18 files readable

[15718] doi:10.1371/journal.pcbi.1013199 [paper, repository]

H- and m-channel overexpression promotes seizure-like events by impairing the ability of inhibitory neurons to process correlated inputs.

Journal: PLoS computational biology

Authors' code: RichLabUConn/HMChannelopathies (GPL-3.0), Zenodo 15012480 (GPL-3.0)

Status: code verified, 94 files readable, 3 matches

[15719] doi:10.3389/fnagi.2025.1612389 [paper, data]

Nurr1 deficiency impairs autophagy-lysosomal function through GBA-dependent transcriptional regulation in Parkinson's disease pathogenesis.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[15720] doi:10.3389/fnagi.2025.1617980 [paper, data]

Intermittent supplementation with &lt;i&gt;Akkermansia muciniphila&lt;/i&gt; and galactooligosaccharides modulates Alzheimer's disease progression, gut microbiota, and colon short-chain fatty acid profiles in mice.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[15721] doi:10.3389/frmbi.2025.1628819 [paper, repository]

Gut microbiota diversity is altered in a sex-dependent manner in Shank3B heterozygote mice.

Journal: Frontiers in microbiomes

Authors' code: echinodermatamata/frontiers_16_s_microbiome (no license)

Status: code verified, 2 files readable, 3 matches

[15722] doi:10.3390/jimaging11070216 [paper, data]

SegR3D: A Multi-Target 3D Visualization System for Realistic Volume Rendering of Meningiomas.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[15723] doi:10.4062/biomolther.2025.010 [paper, data]

Identification of Autophagy-Related Prognostic Signature for Glioblastoma Standard Therapy.

Journal: Biomolecules & therapeutics

Status: data only, 1 dataset cited

[15724] doi:10.7554/elife.103796 [paper, repository]

Evolution of lateralized gustation in nematodes.

Journal: eLife

Authors' code: honglabcsun/Calcium-Imaging (MIT)

Status: code verified, 20 files readable, 4 matches

[15725] doi:10.7554/elife.89425 [paper, repository]

Sex chromosome gene expression associated with vocal learning following hormonal manipulation in female zebra finches.

Journal: eLife

Authors' code: mattisabrat/countmatrix (GPL-3.0), mattisabrat/sex-and-song (GPL-3.0)

Status: code verified, 29 files readable, 7 matches

[15726] doi:10.7554/elife.91979 [paper, repository]

Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues.

Journal: eLife

Authors' code: acquire-project (no license), AllenNeuralDynamics/exa-spim-hardware (MIT), AllenNeuralDynamics/exa-spim-optics (MIT), AllenNeuralDynamics/exaspim-control (MIT), AllenNeuralDynamics/voxel (MIT), AllenNeuralDynamics/exa-spim-characterization (MIT), AllenNeuralDynamics/aind-data-transfer (MIT), Zenodo 7987829 (Apache-2.0), Zenodo 14828041 (Apache-2.0), acquire-project/acquire-python (Apache-2.0)

Status: code verified, 967 files readable, 13 matches

Sunday, 29 June 2025 (6 papers)

[15727] doi:10.1002/pcn5.70136 [paper, repository]

Comparative efficacy and safety of intravenous racemic ketamine, repetitive transcranial magnetic stimulation and electroconvulsive therapy for Stage 2 or higher treatment-resistant depression: A systematic review and network meta-analysis.

Journal: PCN reports : psychiatry and clinical neurosciences

Authors' code: youkiti/are (CC0-1.0), OSF ketbx (no license)

Status: code verified, 8 files readable, 3 matches

[15728] doi:10.1016/j.bioactmat.2025.06.042 [paper]

Inhibition of neuronal necroptosis via disruption of RIPK1-RIPK3 Interactions: The role of neural stem cell-derived exosomes in spinal cord injury recovery.

Journal: Bioactive materials

Status: data only

[15729] doi:10.1016/j.clinph.2025.2110823 [paper, repository]

Gamma activation spread reflects disease activity in amyotrophic lateral sclerosis.

Journal: Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology

Authors' code: mtrubshaw1/Trubshaw_2024_Gamma_Activation (no license), Zenodo 10401793 (CC-BY-4.0)

Status: code verified, 40 files readable, 4 matches

[15730] doi:10.1021/jacs.5c01369 [paper, data]

Chaperone-Mediated Regulation of Tau Phase Separation, Fibrillation, and Toxicity.

Journal: Journal of the American Chemical Society

Status: data only, 1 dataset cited

[15731] doi:10.1111/acer.70111 [paper, repository]

Chronic intermittent alcohol yields sex-specific disruptions in cortical-striatal-limbic oscillations in rats.

Journal: Alcohol, clinical & experimental research

Authors' code: angelahenricks/Sex-Differences-Predictions (no license)

Status: code verified, 4 files readable, 1 match

[15732] doi:10.3390/ijms26136286 [paper, data]

GPX1 and RCN1 as New Endoplasmic Reticulum Stress-Related Biomarkers in Multiple Sclerosis Brain Tissue and Their Involvement in the APP-CD74 Pathway: An Integrated Study Combining Machine Learning and Multi-Omics.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 28 June 2025 (16 papers)

[15733] doi:10.1002/uog.29271 [paper, repository]

Cord blood levels of insulin-like growth factor-1 and insulin-like growth factor binding protein-3 correlate with perinatal brain development in fetal congenital heart disease.

Journal: Ultrasound in obstetrics & gynecology : the official journal of the International Society of Ultrasound in Obstetrics and Gynecology

Authors' code: SVRTK/auto-proc-svrtk (GPL-3.0)

Status: code verified, 61 files readable, 1 match

[15734] doi:10.1007/s00018-025-05783-w [paper, repository]

Circadian ontogenetic metabolomics atlas: an interactive resource with insights from rat plasma, tissues, and feces.

Journal: Cellular and molecular life sciences : CMLS

Authors' code: naef-lab/dryR (no license)

Status: code verified, 8 files readable, 2 matches

[15735] doi:10.1007/s00018-025-05804-8 [paper, data]

Piezo1 disrupts blood-brain barrier via CaMKII/Nrf2 in ischemic stroke.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[15736] doi:10.1016/j.isci.2025.112764 [paper, repository]

Parabrachial &lt;i&gt;Foxp2&lt;/i&gt;-expressing neurons are necessary for sustaining core body temperature in the cold.

Journal: iScience

Authors' code: Geerling-Lab/Parabrachial-Ablations (no license), ultralytics/yolov5 (AGPL-3.0), colab.research.google.com/drive/1gdz2xctogr39tggs-ez6i3rts16wmzzq (no license)

Status: code verified, 97 files readable, 8 matches

[15737] doi:10.1016/j.nicl.2025.103835 [paper, repository]

Assessing workflow impact and clinical utility of AI-assisted brain aneurysm detection: A multi-reader study.

Journal: NeuroImage. Clinical

Authors' code: connectomicslab/AI-Assisted-Aneurysm-Detection (Apache-2.0)

Status: code verified, 9 files readable, 3 matches

[15738] doi:10.1038/s41380-025-03095-w [paper, data]

Integrated multi-omics analyses of synaptosomes revealed synapse-associated novel targets in Alzheimer's disease.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[15739] doi:10.1038/s41531-025-01033-9 [paper, repository]

Physical activity and network attack tolerance preserve motor function in Parkinson's disease: A pilot study.

Journal: NPJ Parkinson's disease

Authors' code: Asendorfa/NAT (no license)

Status: code verified, 4 files readable, 3 matches

[15740] doi:10.1111/epi.18489 [paper, data]

Contribution of perineuronal nets to hyperexcitability in pilocarpine-induced status epilepticus.

Journal: Epilepsia

Status: data only, 1 dataset cited

[15741] doi:10.1186/s12974-025-03496-2 [paper, repository]

CXCR4 and CXCR6 dually limit T cell entry into the polyomavirus-infected brain.

Journal: Journal of neuroinflammation

Authors' code: stratton-lab/alexander-2025-cxcr (EUPL-1.2)

Status: code verified, 4 files readable, 5 matches

[15742] doi:10.1186/s40478-025-02024-w [paper, data]

Ultra-low-input cell-free DNA sequencing for tumor detection and characterization in a real-world pediatric brain tumor cohort.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[15743] doi:10.1186/s40478-025-02040-w [paper, data]

Impaired splicing machinery in craniopharyngiomas unveils PRPF8 and RAVER1 as novel biomarkers and therapeutic targets.

Journal: Acta neuropathologica communications

Status: code on request, 1 dataset cited

[15744] doi:10.1186/s40478-025-02068-y [paper, repository]

Identifying and exploiting combinatorial synthetic lethality by characterizing adaptive kinome rewiring of EGFRvIII-driven glioblastoma.

Journal: Acta neuropathologica communications

Authors' code: Zenodo 15677384 (CC-BY-4.0)

Status: code verified

[15745] doi:10.1186/s40708-025-00263-0 [paper, repository]

Domain Adaptation-enhanced searchlight: enabling classification of brain states from visual perception to mental imagery.

Journal: Brain informatics

Authors' code: AlexOlza/DA-enhanced-searchlight (GPL-3.0)

Status: code verified, 28 files readable, 4 matches

[15746] doi:10.3390/e27070694 [paper, repository]

Time-Resolved Information-Theoretic and Spectral Analysis of fNIRS Signals from Multi-Channel Prototypal Device.

Journal: Entropy (Basel, Switzerland)

Authors' code: yuriantonacci/lsp_toolbox (no license), YuriAntonacci/Time-VaryingIS (no license)

Status: code verified, 11 files readable, 6 matches

[15747] doi:10.3390/ijms26136254 [paper, data]

Soluble and Insoluble Lysates from the Human A53T Mutant α-Synuclein Transgenic Mouse Model Induces α-Synucleinopathy Independent of Injection Site.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[15748] doi:10.3390/ijms26136256 [paper, data]

Genes That Associated with Action of ACTH-like Peptides with Neuroprotective Potential in Rat Brain Regions with Different Degrees of Ischemic Damage.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

Friday, 27 June 2025 (27 papers)

[15749] doi:10.1002/advs.202504278 [paper, repository]

AntiBMPNN: Structure-Guided Graph Neural Networks for Precision Antibody Engineering.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: google-deepmind/alphafold3 (Apache-2.0), oxpig/AntiFold (BSD-3-Clause)

Status: code verified, 182 files readable, 5 matches

[15750] doi:10.1007/s11357-025-01702-w [paper, repository]

Deep learning predicts onset acceleration of 38 age-associated diseases from blood and body composition biomarkers in the UK Biobank.

Journal: GeroScience

Authors' code: xu-ji/onset_acceleration (MIT)

Status: code verified, 27 files readable, 9 matches

[15751] doi:10.1016/j.ctro.2025.101003 [paper, repository]

Cell-specific analysis of microglia following partial brain proton irradiation in mice.

Journal: Clinical and translational radiation oncology

Authors' code: jo-mueller/slice2volume_codeanddocs (MIT)

Status: code verified, 12 files readable

[15752] doi:10.1016/j.ibneur.2025.06.005 [paper]

Downregulation of AKT-mediated p27&lt;sup&gt;Kip1&lt;/sup&gt; phosphorylation with shift to sphingomyelin synthesis in CLN3 disease.

Journal: IBRO neuroscience reports

Status: data only

[15753] doi:10.1016/j.isci.2025.113002 [paper]

Cellular and synaptic properties of molecularly defined neurons in the external globus pallidus.

Journal: iScience

Status: code on request

[15754] doi:10.1016/j.isci.2025.113021 [paper, repository]

Induction of host genes by nested genes during &lt;i&gt;C. elegans&lt;/i&gt; development.

Journal: iScience

Authors' code: VILLOUTREIXLab/nested_genes (no license)

Status: code verified, 4 files readable

[15755] doi:10.1016/j.ynirp.2025.100274 [paper, repository]

Structural and effective brain connectivity in focal epilepsy.

Journal: Neuroimage. Reports

Authors' code: UMCU-EpiLAB/umcuEpi_CCEP_DTI (GPL-3.0)

Status: code verified, 36 files readable, 13 matches

[15756] doi:10.1038/s41598-025-08035-w [paper, repository]

Acute neuronal cell death and neuroinflammation per se do not trigger secondary autoimmune encephalitis in mice.

Journal: Scientific reports

Authors' code: vgastaldi/MMQT-longDTA (no license)

Status: code verified, 2 files readable, 2 matches

[15757] doi:10.1088/1741-2552/ade568 [paper, repository]

Investigating the benefits of artificial neural networks over linear approaches to BMI decoding.

Journal: Journal of neural engineering

Authors' code: chestekresearch.engin.umich.edu/data-and-resources (no license)

Status: code verified

[15758] doi:10.1101/2025.06.24.660703 [paper, repository]

Visualising joint force-velocity properties in musculoskeletal models

Journal: bioRxiv (preprint)

Authors' code: supp:10.1101/2025.06.24.660703/EMS207043-supplement-Code_Data.zip (no license)

Status: code found, still to be checked

[15759] doi:10.1126/sciadv.adq9643 [paper, data]

VIRMA-mediated m&lt;sup&gt;6&lt;/sup&gt;A modification regulates forebrain formation through modulating ribosome biogenesis.

Journal: Science advances

Status: data only, 1 dataset cited

[15760] doi:10.1126/sciadv.adx2050 [paper, data]

Metabolic regulation of visual acuity.

Journal: Science advances

Status: data only, 1 dataset cited

[15761] doi:10.1126/sciadv.adx3011 [paper, repository]

Large-scale experimental assessment of variant effects on the structure and function of the citrate transporter SLC13A5.

Journal: Science advances

Authors' code: Zenodo 15352983 (CC0-1.0), eferrada/slc13a5 (CC0-1.0)

Status: code verified, 3 files readable, 2 matches

[15762] doi:10.1162/imag.a.58 [paper, repository]

Time-resolved instantaneous functional loci estimation (TRIFLE): Estimating time-varying allocation of spatially overlapping sources in functional magnetic resonance imaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: tamarajedidja/trifle (no license)

Status: code verified, 17 files readable, 1 match

[15763] doi:10.1162/imag.a.59 [paper, repository]

Spatiotemporal dynamics of EEG microstate networks over the first two years of life: A multi-cohort longitudinal study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: pine-lab/happe (GPL-3.0)

Status: code verified, 2,000 files readable, 6 matches

[15764] doi:10.1162/netn_a_00449 [paper, repository]

Increased functional network segregation in glioma patients posttherapy: A neurological compensatory response or catastrophe for cognition?

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: OSF ws5ek (no license)

Status: code verified, 4 files readable, 1 match

[15765] doi:10.1162/netn_a_00451 [paper, repository]

A graph neural network approach to investigate brain critical states over neurodevelopment.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: Rodrigo-Motta/BRAIN_ISING_GNN (MIT)

Status: code verified, 13 files readable, 3 matches

[15766] doi:10.1162/netn_a_00456 [paper, repository]

Diffusion wavelets on connectome: Localizing the sources of diffusion mediating structure-function mapping using graph diffusion wavelets.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: maxwass/brain_data_processing (no license)

Status: code verified, 186 files readable, 1 match

[15767] doi:10.1242/dev.204564 [paper, data]

In vivo transition in chromatin accessibility during differentiation of deep-layer excitatory neurons in the neocortex.

Journal: Development (Cambridge, England)

Status: data only, 3 datasets cited

[15768] doi:10.1371/journal.pbio.3003232 [paper, repository]

Human attention-guided visual perception is governed by rhythmic oscillations and aperiodic timescales.

Journal: PLoS biology

Authors' code: Zenodo 15404714 (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[15769] doi:10.1371/journal.pone.0326598 [paper, repository]

Functional analysis within latent states: A novel framework for analysing functional time series data.

Journal: PloS one

Authors' code: Zenodo 14533222 (CC-BY-4.0)

Status: code verified, 3 files readable, 8 matches

[15770] doi:10.3389/fimmu.2025.1567970 [paper, data]

The role of ATF3 in precision medicine of brain arteriovenous malformation: based on endothelial cell proliferation.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[15771] doi:10.3389/fimmu.2025.1583827 [paper]

Exercise improves pulmonary fibrosis and neurological symptoms via S100A12 inhibition.

Journal: Frontiers in immunology

Status: data only

[15772] doi:10.3390/bioengineering12070699 [paper, data]

A Unified Deep Learning Ensemble Framework for Voice-Based Parkinson's Disease Detection and Motor Severity Prediction.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[15773] doi:10.3390/brainsci15070691 [paper]

A Permutation Entropy Method for Sleep Disorder Screening.

Journal: Brain sciences

Status: code on request

[15774] doi:10.3390/diagnostics15131642 [paper, repository]

A Meta-Learning-Based Ensemble Model for Explainable Alzheimer's Disease Diagnosis.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: F-H5/diagnosis_explanation_module (no license)

Status: code verified, 2 files readable, 6 matches

[15775] doi:10.3390/ijms26136197 [paper, repository]

Neuroferritinopathy Human-Induced Pluripotent Stem Cell-Derived Astrocytes Reveal an Active Role of Free Intracellular Iron in Astrocyte Reactivity.

Journal: International journal of molecular sciences

Authors' code: r-project.org (no license)

Status: code verified

Thursday, 26 June 2025 (32 papers)

[15776] doi:10.1002/ana.27301 [paper]

The Role of Electroencephalography in Predicting Post-Stroke Seizures and an Updated Prognostic Model (SeLECT-EEG).

Journal: Annals of neurology

Status: code on request

[15777] doi:10.1002/btm2.70034 [paper, data]

Optogenetic modulation of peripheral nociceptive neurons with biocompatible optoelectronic implants.

Journal: Bioengineering & translational medicine

Status: data only, 1 dataset cited

[15778] doi:10.1007/s00062-025-01535-2 [paper, repository]

Deep Learning Model for Automated Segmentation of Orbital Structures in MRI Images.

Journal: Clinical neuroradiology

Authors' code: OSF sy6jb (no license)

Status: code verified, 5 files readable

[15779] doi:10.1016/j.ebiom.2025.105825 [paper, data]

Skeletal muscle, neuromuscular organoids and assembloids: a scoping review.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[15780] doi:10.1016/j.jaim.2024.101088 [paper, data]

Network pharmacology and in-silico studies for molecular mechanisms of analgesic, anti-inflammatory and anti-arthritic effects of Withania somnifera (L.) Dunal phytoconstituents.

Journal: Journal of Ayurveda and integrative medicine

Status: data only, 1 dataset cited

[15781] doi:10.1016/j.molmet.2025.102196 [paper, repository]

Adropin expression reflects circadian, lipoprotein, and mitochondrial processes in human tissues.

Journal: Molecular metabolism

Authors' code: mingqizh/GD-CAT (MIT)

Status: code verified, 11 files readable, 2 matches

[15782] doi:10.1016/j.neurot.2025.e00630 [paper, data]

Identification of plasma SEMA3E as the diagnostic biomarker for human epilepsy based on integrated bioinformatics analysis.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[15783] doi:10.1038/s44303-025-00096-w [paper]

Aldehydic load as an objective imaging biomarker of mild traumatic brain injury.

Journal: Npj imaging

Status: code on request

[15784] doi:10.1073/pnas.2427032122 [paper, data]

Contribution of glutamatergic projections to neurons in the nonhuman primate substantia nigra pars reticulata for reactive inhibition.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[15785] doi:10.1073/pnas.2502558122 [paper, repository]

Synergistic deficits in parvalbumin interneurons and dopamine signaling drive ACC dysfunction in chronic pain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: leomol/FPA (GPL-3.0)

Status: code verified, 34 files readable

[15786] doi:10.1088/1741-2552/ade566 [paper, repository]

Artifact-reference multivariate backward regression (ARMBR): a novel method for EEG blink artifact removal with minimal data requirements.

Journal: Journal of neural engineering

Authors' code: S-Shah-Lab/ARMBR (GPL-3.0)

Status: code verified, 24 files readable, 5 matches

[15787] doi:10.1098/rstb.2024.0114 [paper, repository]

Why did the human brain size evolve? A way forward.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7834282.v1 (no license)

Status: code found, still to be checked

[15788] doi:10.1098/rstb.2024.0119 [paper, repository]

Modality-specific long-term memory enhancement in &lt;i&gt;Heliconius&lt;/i&gt; butterflies.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7837888 (no license)

Status: code found, still to be checked

[15789] doi:10.1111/nyas.15397 [paper, data]

Quality of life in older adults is enhanced by piano practice: Results from a randomized controlled trial.

Journal: Annals of the New York Academy of Sciences

Status: data only, 1 dataset cited

[15790] doi:10.1162/imag.a.56 [paper, repository]

Supervised brain node and network construction under voxel-level functional imaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: wanwanx/SBP (GPL-3.0)

Status: code verified, 4 files readable, 1 match

[15791] doi:10.1162/imag.a.57 [paper, repository]

Sensory modality of initiation cues modulates action goal-relevant neural representations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: dundonnm/vRSAb (GPL-3.0)

Status: code verified, 3 files readable

[15792] doi:10.1177/14713012251355004 [paper, data]

Dementia Risk Reduction Education Programs and Resources for Indigenous Peoples of Canada, Aotearoa New Zealand, United States of America and Australia: A Scoping Review.

Journal: Dementia (London, England)

Status: data only, 1 dataset cited

[15793] doi:10.1371/journal.pbio.3003185 [paper, repository]

N2 sleep promotes the occurrence of 'aha' moments in a perceptual insight task.

Journal: PLoS biology

Authors' code: maritp/sleepsight (no license), Zenodo 15299273 (CC-BY-4.0)

Status: code verified, 36 files readable, 6 matches

[15794] doi:10.1371/journal.pcbi.1013214 [paper, repository]

Allosteric modulation of proton binding confers Cl- activation and glutamate selectivity to vesicular glutamate transporters.

Journal: PLoS computational biology

Authors' code: jugit.fz-juelich.de/computational-neurophysiology/vglut-kinetic-models (no license), computational-neurophysiology/vglut-kinetic-models (no license)

Status: code verified, 8 files readable, 6 matches

[15795] doi:10.1371/journal.pone.0321942 [paper, data]

A novel dual-branch network for comprehensive spatiotemporal information integration for EEG-based epileptic seizure detection.

Journal: PloS one

Status: data only, 1 dataset cited

[15796] doi:10.1371/journal.pone.0325804 [paper, data]

How to nudge students toward healthier snacks? Consumer neuroscience insights on multisensory nudge interventions in university vending machines.

Journal: PloS one

Status: data only, 1 dataset cited

[15797] doi:10.1371/journal.pone.0325844 [paper, repository]

Groupwise registration of infant brain diffusion tensor images using intermediate subgroup templates.

Journal: PloS one

Authors' code: Luckykathy6/groupwiseRegister (no license)

Status: code verified, 5 files readable, 1 match

[15798] doi:10.1371/journal.pone.0326425 [paper, repository]

Metal coordination and enzymatic reaction of the glioma-target R132H isocitrate dehydrogenase 1: Insights by molecular simulations.

Journal: PloS one

Authors' code: mimic-project (no license), Zenodo 13862463 (CC-BY-4.0)

Status: code verified

[15799] doi:10.1371/journal.pone.0326542 [paper, data]

A mixed methods exploration of motor imagery in autistic and non-autistic adults: Diverse experiences and implications for interventions.

Journal: PloS one

Status: data only, 1 dataset cited

[15800] doi:10.14336/ad.2025.0334 [paper, repository]

GABA Levels Are Significantly Reduced in the Visual, Motor, and Auditory Cortex of Patients with Mild Cognitive Impairment.

Journal: Aging and disease

Authors' code: markmikkelsen.github.io/gannet-docs (no license)

Status: code verified

[15801] doi:10.21203/rs.3.rs-6864753/v1 [paper, repository]

Lifespan investigation of brain volumetric changes associated with substance use disorders

Journal: Research Square (preprint)

Authors' code: LeonDLotter/CTdev (CC-BY-NC-SA-4.0), saigegit/SAIGE (GPL-3.0), xm1701/bcprs (no license), precimed/pleiofdr (GPL-3.0)

Status: code verified, 137 files readable, 7 matches

[15802] doi:10.3389/fimmu.2025.1572468 [paper, data]

Integrative bioinformatics and machine learning approaches reveal oxidative stress and glucose metabolism related genes as therapeutic targets and drug candidates in Alzheimer's disease.

Journal: Frontiers in immunology

Status: data only, 2 datasets cited

[15803] doi:10.3389/fnins.2025.1601101 [paper, data]

Inhibition of miR-20a promotes neural stem cell survival under oxidative stress conditions.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[15804] doi:10.3390/biomimetics10070415 [paper, data]

Damage Resistance of an fMRI-Spiking Neural Network Based on Speech Recognition Against Stochastic Attack.

Journal: Biomimetics (Basel, Switzerland)

Status: data only, 1 dataset cited

[15805] doi:10.3390/brainsci15070685 [paper, data]

Effect of EEG Electrode Numbers on Source Estimation in Motor Imagery.

Journal: Brain sciences

Status: data only, 1 dataset cited

[15806] doi:10.3390/brainsci15070688 [paper, data]

Sensory Attenuation and Agency in Cooperative and Individual Contexts: Exploring the Role of Empathy in Action Perception.

Journal: Brain sciences

Status: data only, 1 dataset cited

[15807] doi:10.3390/e27070684 [paper, repository]

Improving the Minimum Free Energy Principle to the Maximum Information Efficiency Principle.

Journal: Entropy (Basel, Switzerland)

Authors' code: survivor99.com/lcg/lu-py2025-2.zip (no license), survivor99.com (no license)

Status: code verified

Wednesday, 25 June 2025 (44 papers)

[15808] doi:10.1002/advs.202503722 [paper, data]

Neutrophil Mobilization Triggers Microglial Functional Change to Exacerbate Cerebral Ischemia-Reperfusion Injury.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[15809] doi:10.1007/s10278-025-01570-y [paper, repository]

An Unsupervised Brain Extraction Quality Control Approach for Efficient Neuro-Oncology Studies.

Journal: Journal of imaging informatics in medicine

Authors' code: IUCompPath/QC_MRI (no license), Zenodo 4633206 (other-open), fets-ai/labelfusion (Apache-2.0)

Status: code verified, 41 files readable

[15810] doi:10.1016/j.celrep.2025.115905 [paper, repository]

Gamma synchronization between the medial temporal lobe and medial frontal cortex for goal-directed visual attention in humans.

Journal: Cell reports

Authors' code: OSF 9gq3p (no license)

Status: code verified, 13 files readable, 1 match

[15811] doi:10.1016/j.celrep.2025.115909 [paper, data]

Cytokine-induced reprogramming of human macrophages toward Alzheimer's disease-relevant molecular and cellular phenotypes in vitro.

Journal: Cell reports

Status: code on request, 2 datasets cited

[15812] doi:10.1016/j.dcn.2025.101569 [paper, repository]

A Bayesian Regularized and Annotation-Informed Integrative Analysis of Cognition (BRAINIAC).

Journal: Developmental cognitive neuroscience

Authors' code: nidaye1999/BRAINIAC (no license)

Status: code verified, 6 files readable

[15813] doi:10.1016/j.isci.2025.113001 [paper]

The posterior capsular central amygdala showing synaptic coactivation with nociplastic pain-associated parabrachial neurons in mice.

Journal: iScience

Status: code on request

[15814] doi:10.1016/j.isci.2025.113009 [paper]

Graded remapping of prefrontal representations preserves a cumulative record of distinct events within an environment.

Journal: iScience

Status: code on request

[15815] doi:10.1016/j.nicl.2025.103833 [paper, repository]

Longitudinal changes of resting-state networks in Parkinson's disease.

Journal: NeuroImage. Clinical

Authors' code: florinneuro/meeg-restingstate (GPL-3.0)

Status: code verified, 32 files readable, 2 matches

[15816] doi:10.1021/jacsau.5c00289 [paper, repository]

HiCLR: Knowledge-Induced Hierarchical Contrastive Learning with Retrosynthesis Prediction Yields a Reaction Foundation Model.

Journal: JACS Au

Authors' code: Hanjun-Dai/GLN (MIT), mjwen/rxnrep (LGPL-2.1), wangxr0526/Parrot (MIT), nsf-c-cas/yield-rxn (no license)

Status: code verified, 288 files readable, 1 match

[15817] doi:10.1038/s41398-025-03437-w [paper, repository]

Identification of novel therapeutic targets for cognitive performance and associations with brain health.

Journal: Translational psychiatry

Authors' code: MRCIEU/TwoSampleMR (other), chr1swallace.github.io/coloc (no license)

Status: code verified, 73 files readable, 2 matches

[15818] doi:10.1038/s41467-025-60061-4 [paper, repository]

Metabolic reprogramming of the neovascular niche promotes regenerative angiogenesis in proliferative retinopathy.

Journal: Nature communications

Authors' code: gaelcge/OIRDropseq (CC0-1.0)

Status: code verified, 25 files readable, 10 matches

[15819] doi:10.1038/s41467-025-60442-9 [paper, repository]

ETMR stem-like state and chemo-resistance are supported by perivascular cells at single-cell resolution.

Journal: Nature communications

Authors' code: satijalab.org/seurat (no license), cloud.r-project.org/web/packages (no license), Teichlab/cellphonedbM (no license), diazlab/CONICS (no license), Teichlab/cellphonedb (MIT)

Status: code verified, 245 files readable

[15820] doi:10.1038/s41467-025-60497-8 [paper, repository]

AAV-based delivery of RNAi targeting ataxin-2 improves survival and pathology in TDP-43 mice.

Journal: Nature communications

Authors' code: DavidsonLabCHOP/Amado_2025_NatComm (MIT), Zenodo 15427428 (MIT)

Status: code verified, 5 files readable, 5 matches

[15821] doi:10.1038/s41467-025-60821-2 [paper, repository]

Low frequency oscillations - neural correlates of stability and flexibility in cognition.

Journal: Nature communications

Authors' code: Zenodo 15374274 (CC-BY-4.0), juliaericson/information-flow-in-silico-brain (no license)

Status: code verified, 8 files readable, 4 matches

[15822] doi:10.1038/s41467-025-60841-y [paper, repository]

Predictive goal coding by dentate gyrus somatostatin-expressing interneurons in male mice.

Journal: Nature communications

Authors' code: doi:10.12751/g-node.lh1rr2 (no license), cleibold/somireward (GPL-3.0), Zenodo 15407729 (GPL-3.0)

Status: code verified, 40 files readable, 13 matches

[15823] doi:10.1038/s41467-025-60855-6 [paper, data]

Polyglutamylation of microtubules drives neuronal remodeling.

Journal: Nature communications

Status: data only, 1 dataset cited

[15824] doi:10.1038/s41467-025-60943-7 [paper, repository]

Abstract rule learning promotes cognitive flexibility in complex environments across species.

Journal: Nature communications

Authors' code: klusta-team/klustaviewa (BSD-3-Clause), Zenodo 15466504 (CC-BY-4.0)

Status: code verified, 101 files readable, 1 match

[15825] doi:10.1038/s41467-025-61010-x [paper, repository]

Confirmation bias through selective readout of information encoded in human parietal cortex.

Journal: Nature communications

Authors' code: panzerilab/MINT (GPL-3.0), DonnerLab/pymeg (no license), DonnerLab/2025_Park_ConfirmationBias-through-Selective-Readout-of-Information-Encoded-in-Human-Parietal-Cortex (MIT), Zenodo 15350393 (MIT)

Status: code verified, 579 files readable, 19 matches

[15826] doi:10.1038/s41562-025-02252-z [paper, repository]

In silico discovery of representational relationships across visual cortex.

Journal: Nature human behaviour

Authors' code: gifale95/RNC (CC-BY-NC-4.0)

Status: code verified, 1,187 files readable, 40 matches

[15827] doi:10.1038/s41586-025-09176-8 [paper, repository]

Nerve-to-cancer transfer of mitochondria during cancer metastasis.

Journal: Nature

Authors' code: GreletLab/mtDNA-heteroplasmy (no license), GreletLab/DAPI-count (no license)

Status: code verified, 4 files readable

[15828] doi:10.1038/s41586-025-09199-1 [paper, repository]

The dynamics and geometry of choice in the premotor cortex.

Journal: Nature

Authors' code: engellab/neuralflow (MIT), Zenodo 15426288 (CC-BY-4.0)

Status: code verified, 90 files readable, 19 matches

[15829] doi:10.1038/s41586-025-09200-x [paper, data]

Interactions between TTYH2 and APOE facilitate endosomal lipid transfer.

Journal: Nature

Status: data only, 2 datasets cited

[15830] doi:10.1038/s41586-025-09208-3 [paper, data]

Engrafted nitrergic neurons derived from hPSCs improve gut dysmotility in mice.

Journal: Nature

Status: data only, 1 dataset cited

[15831] doi:10.1038/s41593-025-01998-z [paper, repository]

Fine-mapping genomic loci refines bipolar disorder risk genes.

Journal: Nature neuroscience

Authors' code: mkoromina/SAFFARI (no license), Mullins-Lab/Post-finemap_processing (no license), Yves-CHEN/DENTIST (LGPL-3.0), omerwe/polyfun (MIT), getian107/PRScs (MIT), mommy003/r2redux (no license), Ripkelab/ricopili (no license)

Status: code verified, 118 files readable, 5 matches

[15832] doi:10.1038/s42003-025-08292-5 [paper, repository]

Author Correction: Parvalbumin neurons enhance temporal coding and reduce cortical noise in complex auditory scenes.

Journal: Communications biology

Authors' code: Zenodo 14290575 (CC-BY-4.0)

Status: code verified, 350 files readable

[15833] doi:10.1073/pnas.2426441122 [paper, repository]

Sensory population activity reveals downstream confidence computations in the primate visual system.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: HukLab/PLDAPS (no license), zoebsinger/V1-Confidence-Physiology (no license)

Status: code verified, 213 files readable, 7 matches

[15834] doi:10.1093/braincomms/fcaf255 [paper, repository]

Transcutaneous electrical nerve stimulation enhances locomotor adaptation savings in people with multiple sclerosis.

Journal: Brain communications

Authors' code: andyhagen11/Transcutaneous-electrical-nerve-stimulation-enhances-locomotor-adaptation-savings-in-MS (MIT)

Status: code verified, 6 files readable, 7 matches

[15835] doi:10.1111/dom.16565 [paper, repository]

Alterations in the functional MRI-based temporal brain organisation in individuals with obesity.

Journal: Diabetes, obesity & metabolism

Authors' code: CAMIN-neuro/FuNP (no license), rmarkello/abagen (BSD-3-Clause)

Status: code verified, 82 files readable, 7 matches

[15836] doi:10.1126/sciadv.ads9134 [paper, repository]

State modulation in spatial networks with three interneuron subtypes.

Journal: Science advances

Authors' code: Zenodo 15232542 (CC-BY-4.0), hcc11/interneuron (MIT)

Status: code verified, 93 files readable, 2 matches

[15837] doi:10.1186/s40478-025-02048-2 [paper, repository]

Copper supplementation mitigates Parkinson-like wild-type SOD1 pathology and nigrostriatal degeneration in a novel mouse model.

Journal: Acta neuropathologica communications

Authors' code: RichardHarwood/Sod1_CuATSM_Image_Analysis (no license)

Status: code verified, 4 files readable, 3 matches

[15838] doi:10.1371/journal.pcbi.1013171 [paper, repository]

The roles of feedback loops in the Caenorhabditis elegans rhythmic forward locomotion.

Journal: PLoS computational biology

Authors' code: Zenodo 12746051 (CC-BY-4.0)

Status: code verified, 304 files readable

[15839] doi:10.1371/journal.pone.0310287 [paper, data]

Effect of high-intensity anaerobic exercise on electrocortical activity in athletes and non-athletes.

Journal: PloS one

Status: data only, 1 dataset cited

[15840] doi:10.1371/journal.pone.0325930 [paper, data]

Effects of age on the neural correlates of auditory working memory in cochlear implant users.

Journal: PloS one

Status: data only, 1 dataset cited

[15841] doi:10.1371/journal.pone.0326568 [paper, data]

Seeding amplification assay with Universal Control Fluid: Standardized detection of α-synucleinopathies.

Journal: PloS one

Status: data only, 1 dataset cited

[15842] doi:10.1523/eneuro.0015-25.2025 [paper, repository]

Automatic OptoDrive for Extracellular Recordings and Optogenetic Stimulation in Freely Moving Mice.

Journal: eNeuro

Authors' code: OSF dkr42 (no license)

Status: empty repository

[15843] doi:10.1523/jneurosci.0226-24.2025 [paper, data]

Distinct Regulation of Early Trafficking of the NMDA Receptors by the Ligand-Binding Domains of the GluN1 and GluN2A Subunits.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 2 datasets cited

[15844] doi:10.1523/jneurosci.1223-23.2025 [paper, repository]

Sustained Hippocampal Theta Oscillations Reflect Experience-Dependent Learning in Backward Temporal Order Memory Retrieval.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: drive.google.com/drive/folders (no license)

Status: code verified

[15845] doi:10.17879/freeneuropathology-2025-6763 [paper, repository]

Evaluating ultrastructural preservation quality in banked brain tissue.

Journal: Free neuropathology

Authors' code: andymckenzie/Ultrastructure_quality_manuscript (no license)

Status: code verified, 3 files readable, 1 match

[15846] doi:10.3389/fpsyg.2025.1598196 [paper, repository]

Investigating mu and alpha oscillations as indicators of intra-individual success and inter-individual ability in motor imagery performance.

Journal: Frontiers in psychology

Authors' code: mariapaulavillabona/mu-alpha-mi-performance (no license), neurofractal/fBOSC (GPL-3.0)

Status: code verified, 197 files readable, 12 matches

[15847] doi:10.3390/bioengineering12070692 [paper, data]

The Casual Associations Between Brain Functional Networks and Fibromyalgia: A Large-Scale Genetic Correlation and Mendelian Randomization Study.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 2 datasets cited

[15848] doi:10.3390/brainsci15070681 [paper, repository]

Nonlinear Dynamics of MEG and EMG: Stability and Similarity Analysis.

Journal: Brain sciences

Authors' code: ArminH69/Nonlinear-Dynamics-of-MEG-and-EMG-Stability-and-Similar-ity-Analysis (no license)

Status: code verified, 8 files readable, 4 matches

[15849] doi:10.3390/cells14130976 [paper]

From Brain to Blood: Uncovering Potential Therapeutical Targets and Biomarkers for Huntington's Disease Using an Integrative RNA-Seq Analytical Platform (BDASeq&lt;sup&gt;®&lt;/sup&gt;).

Journal: Cells

Status: data only

[15850] doi:10.3390/jcm14134515 [paper, data]

Combining Predictive Models of Mortality and Time-to-Discharge for Improved Outcome Assessment in Intensive Care Units.

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

[15851] doi:10.7554/elife.97874 [paper, repository]

Investigating working memory updating processes of the human subcortex using 7T MRI.

Journal: eLife

Authors' code: OSF jmu6q (no license)

Status: code verified, 2 files readable, 2 matches

Tuesday, 24 June 2025 (31 papers)

[15852] doi:10.1016/j.bpj.2025.06.029 [paper, repository]

Voltage gating and 4-aminopyridine inhibition in the Shaker Kv channel revealed by a closed-state model.

Journal: Biophysical journal

Authors' code: Zenodo 13958682 (CC-BY-4.0)

Status: code verified, 1 file readable, 1 match

[15853] doi:10.1016/j.celrep.2025.115898 [paper, repository]

Reverse engineering neuron-type-specific and type-orthogonal splicing-regulatory networks using diverse cellular transcriptomes.

Journal: Cell reports

Authors' code: chaolinzhanglab/mras (Apache-2.0)

Status: code verified, 6 files readable

[15854] doi:10.1016/j.dcn.2025.101589 [paper, repository]

Cognition is associated with task-related brain network reconfiguration in late childhood.

Journal: Developmental cognitive neuroscience

Authors' code: ABCD-STUDY/abcd-hcp-pipeline (BSD-3-Clause)

Status: code verified, 8 files readable, 1 match

[15855] doi:10.1016/j.isci.2025.112652 [paper, repository]

Primary auditory thalamus relays directly to cortical layer 1 interneurons.

Journal: iScience

Authors' code: takesian-lab/Vattino-et-al-2025 (no license)

Status: code verified, 26 files readable

[15856] doi:10.1016/j.isci.2025.112989 [paper]

Molecular diversity of protostome non-visual opsin arthropsin.

Journal: iScience

Status: code on request

[15857] doi:10.1016/j.isci.2025.112999 [paper]

Sensory adaptation modulates coding and the perceptual quality of odor mixtures.

Journal: iScience

Status: code on request

[15858] doi:10.1016/j.nbas.2025.100142 [paper, repository]

Frontal theta oscillations and cognitive flexibility: Age-related modulations in EEG activity.

Journal: Aging brain

Authors' code: margdarna/IDED (no license)

Status: code verified, 30 files readable, 11 matches

[15859] doi:10.1038/s41398-025-03434-z [paper]

Not just old wine in new bottles: Polygenic liability for ADHD is associated with electrophysiological affective-motivational processing beyond anxiety, depression, and ODD.

Journal: Translational psychiatry

Status: code on request

[15860] doi:10.1038/s41540-025-00543-9 [paper, repository]

Region-specific mean field models enhance simulations of local and global brain dynamics.

Journal: NPJ systems biology and applications

Authors' code: RobertaMLo/tvb_data_preprocessing (no license), RobertaMLo/cMF-TVB (no license)

Status: code verified, 40 files readable, 10 matches

[15861] doi:10.1038/s44220-025-00447-x [paper, repository]

Neuroimaging insights into brain mechanisms of early-onset restrictive eating disorders.

Journal: Nature. Mental health

Authors' code: claramoreau9/brightlab (no license)

Status: code verified, 4 files readable, 1 match

[15862] doi:10.1093/braincomms/fcaf251 [paper, repository]

Network changes associated with right anterior temporal lobe atrophy: insight into unique symptoms.

Journal: Brain communications

Authors' code: Jfortin1/ComBatHarmonization (no license)

Status: code verified, 17 files readable

[15863] doi:10.1093/pnasnexus/pgaf175 [paper, repository]

Improving predictability, reliability, and generalizability of brain-wide associations for cognitive abilities via multimodal stacking.

Journal: PNAS nexus

Authors' code: HAM-lab-Otago-University/Predictability-Reliability-Generalizability (CC0-1.0)

Status: code verified, 36 files readable, 7 matches

[15864] doi:10.1101/2025.06.23.25329951 [paper]

Feasibility of high-density surface electromyography for the detection of neuromuscular disorders in children

Journal: medRxiv (preprint)

Status: code on request

[15865] doi:10.1101/2025.06.24.25330187 [paper]

Reduced Neural Speech Tracking in Adolescents with Listening Difficulty

Journal: medRxiv (preprint)

Status: code on request

[15866] doi:10.1113/jp288290 [paper]

Exhaustive exercise abolishes REV-ERB-α circadian rhythm and shifts the kynurenine pathway to a neurotoxic profile in mice.

Journal: The Journal of physiology

Status: data only

[15867] doi:10.1162/imag.a.21 [paper, repository]

Challenging the status quo: A guide to open and reproducible neuroimaging for early career researchers.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: neurodatascience/ecr-fair (no license)

Status: code verified, 2 files readable

[15868] doi:10.1162/imag.a.52 [paper, data]

Toward a standard preoperative MRI protocol for functional neurosurgery.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 2 datasets cited

[15869] doi:10.1162/imag.a.53 [paper, repository]

Seeing speech: Neural mechanisms of cued speech perception in prelingually deaf and hearing users.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: AnnahitaSarre/CUSPEX_seeing_speech (no license)

Status: code verified, 35 files readable

[15870] doi:10.1162/imag.a.60 [paper, repository]

Regressing away common neural choice signals does not make them artifacts: Comment on Frömer et al. 2024.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Elisabeth-Pares/NHB_MA_OConnell_etal_2024 (no license)

Status: code verified, 3 files readable, 2 matches

[15871] doi:10.1162/imag.a.61 [paper, repository]

Neural correlates of reduced sensitivity to information about uncertainty during valuation in older adults: An fNIRS study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF yhb2f (no license)

Status: code verified, 1 file readable, 2 matches

[15872] doi:10.1172/jci.insight.192929 [paper, data]

LRP2 is a potential molecular target for nonsyndromic pathological myopia.

Journal: JCI insight

Status: data only, 1 dataset cited

[15873] doi:10.1172/jci188138 [paper, data]

Nemo-like kinase disrupts nuclear import and drives TDP43 mislocalization in ALS.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[15874] doi:10.1371/journal.pcbi.1013243 [paper, repository]

A mammalian inferior colliculus model for sound source separation using interaural time differences.

Journal: PLoS computational biology

Authors' code: cleibold/ICmodel (GPL-3.0)

Status: code verified, 18 files readable

[15875] doi:10.1371/journal.pone.0317387 [paper, repository]

Evaluation of subretinally delivered Cas9 ribonucleoproteins in murine and porcine animal models highlights key considerations for therapeutic translation of genetic medicines.

Journal: PloS one

Authors' code: foundry.github.io/dnachisel (no license)

Status: dead link

[15876] doi:10.1371/journal.pone.0322351 [paper, data]

The Healthy Brain 9 (HB9): A new instrument to characterize subjective cognitive decline, and detect anosognosia in mild cognitive impairment.

Journal: PloS one

Status: data only, 1 dataset cited

[15877] doi:10.1371/journal.pone.0325067 [paper, data]

Sex-specific effects of appetite suppressants on stereotypy in rats.

Journal: PloS one

Status: data only, 1 dataset cited

[15878] doi:10.1371/journal.pone.0326920 [paper, repository]

What are memories made of? A survey of neuroscientists on the structural basis of long-term memory.

Journal: PloS one

Authors' code: OSF 8zd4e (no license)

Status: code verified

[15879] doi:10.3310/nihropenres.13859.2 [paper, repository]

Strategy-based cognitive rehabilitation for childhood brain tumour: Protocol for an acceptability and feasibility trial of the Fatigue, Learning, and Memory Enrichment (FLaME) intervention.

Journal: NIHR open research

Authors' code: figshare 28225142 (CC-BY-4.0)

Status: empty repository

[15880] doi:10.3389/fimmu.2025.1581850 [paper, data]

Molecular insights into glioblastoma progression: role of CHCHD2P9 in tumor heterogeneity and prognosis.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[15881] doi:10.7554/elife.97098 [paper, repository]

Distinct neural bases of subcomponents of the attentional blink.

Journal: eLife

Authors' code: OSF gpzbe (no license)

Status: code verified, 25 files readable, 7 matches

[15882] doi:10.7554/elife.99290 [paper, repository]

Neural dynamics of visual working memory representation during sensory distraction.

Journal: eLife

Authors' code: degutis/wm_dynamiccoding (MIT), OSF jq3ma (no license)

Status: code verified, 46 files readable, 5 matches

Monday, 23 June 2025 (31 papers, 22 on this page)

[15883] doi:10.1007/s10072-025-08298-1 [paper]

Unilateral contralesional versus bilateral repetitive transcranial magnetic stimulation for patients with post stroke dysphagia: a randomized controlled study.

Journal: Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology

Status: code on request

[15884] doi:10.1007/s12028-025-02301-5 [paper, repository]

Near-Infrared Spectroscopy to Assess Covert Volitional Brain Activity in Intensive Care.

Journal: Neurocritical care

Authors' code: TheOwenLab/NCC_Tongue_Imagery (no license)

Status: code verified, 13 files readable, 2 matches

[15885] doi:10.1016/j.isci.2025.112992 [paper, data]

Differential substrate degradation by super-degron: EGFP in wild-type mouse cells, PD-1 requires CRBN humanization.

Journal: iScience

Status: code on request, 1 dataset cited

[15886] doi:10.1016/j.xpro.2025.103877 [paper, repository]

Protocol for phase-amplitude coupling analysis in local field potentials from macaque monkeys to investigate neural oscillation dynamics.

Journal: STAR protocols

Authors' code: farrokhiashkan/STAR_Protocols_PAC (no license), mramezani8362/STAR_Protocols_PAC (no license)

Status: code verified, 12 files readable, 9 matches

[15887] doi:10.1038/s41467-025-60812-3 [paper, repository]

Cholinergic basal forebrain neurons regulate vascular dynamics and cerebrospinal fluid flux.

Journal: Nature communications

Authors' code: ChuangMRILab/SMS-EPI (no license), ChuangMRILab/PCNN3D (no license)

Status: code verified, 21 files readable, 1 match

[15888] doi:10.1038/s41593-025-01976-5 [paper, repository]

Large-scale high-density brain-wide neural recording in nonhuman primates.

Journal: Nature neuroscience

Authors' code: etrautmann/Neuropixels-NHP-hardware (MIT), Zenodo 7946011 (CC-BY-4.0), Zenodo 7946010 (CC-BY-4.0)

Status: code verified, 2 files readable

[15889] doi:10.1038/s41593-025-01988-1 [paper, repository]

Closed-loop electrical stimulation prevents focal epilepsy progression and long-term memory impairment.

Journal: Nature neuroscience

Authors' code: fmatoolbox.sourceforge.net (no license), JorritMontijn/ZETA (GPL-3.0)

Status: code verified, 22 files readable, 2 matches

[15890] doi:10.1038/s41597-025-05378-x [paper, data]

A longitudinal EEG dataset of event-related potential.

Journal: Scientific data

Status: data only, 2 datasets cited

[15891] doi:10.1038/s41598-025-06438-3 [paper, repository]

Cryogenic mouse tissue homogenization as an alternative to fresh-frozen biopsy use for genomics, transcriptomics, proteomics and metabolomics.

Journal: Scientific reports

Authors' code: massive.ucsd.edu/proteosafe/dataset.jsp (no license)

Status: code verified

[15892] doi:10.1038/s42003-025-08377-1 [paper, repository]

Hippocampal systems for event encoding and sequencing during ongoing narrative comprehension.

Journal: Communications biology

Authors' code: jwparks/NarrativePuzzle (MIT), Zenodo 15597906 (CC-BY-4.0)

Status: code verified, 13 files readable, 7 matches

[15893] doi:10.1038/s42256-025-01041-7 [paper, repository]

Dimensions underlying the representational alignment of deep neural networks with humans.

Journal: Nature machine intelligence

Authors' code: florianmahner/object-dimensions (GPL-3.0), Zenodo 14731440 (GPL-3.0)

Status: code verified, 93 files readable, 9 matches

[15894] doi:10.1073/pnas.2417010122 [paper, repository]

Genetic contributions to brain criticality and its relationship with human cognitive functions.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 14416318 (CC-BY-4.0)

Status: code verified, 10 files readable

[15895] doi:10.1101/2025.06.22.25330074 [paper, repository]

Mapping sex differences in brain and cognition in relation to<i>APOE4</i>and amyloid burden: A longitudinal normative modelling study

Journal: medRxiv (preprint)

Authors' code: pcntoolkit.readthedocs.io (no license), amarquand/PCNtoolkit (GPL-3.0)

Status: code verified, 126 files readable, 1 match

[15896] doi:10.1113/ep092351 [paper, repository]

Computing muscle mechanical state variables from combined proprioceptive sensory feedback.

Journal: Experimental physiology

Authors' code: stephensjake72/spindlegrant (no license)

Status: code verified, 421 files readable, 2 matches

[15897] doi:10.1162/nol_a_00170 [paper, repository]

Basque-Spanish Bilingual Aphasia: A Case-Study to Reveal Frequency-Based, Language-Agnostic Lexical Organization in Bilinguals.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF xq6zy (no license)

Status: code found, still to be checked

[15898] doi:10.1172/jci.insight.182123 [paper, repository]

Dysregulated synaptic gene expression in oligodendrocytes of spinal and bulbar muscular atrophy.

Journal: JCI insight

Authors' code: madoka-iida/Iida-et-al.-2023 (no license)

Status: code verified, 8 files readable, 5 matches

[15899] doi:10.1186/s13054-025-05424-5 [paper, repository]

Advanced serial analysis of the diaphragm surface EMG: insights into the effect of pressure support on the neuro-ventilatory response during the ICU stay.

Journal: Critical care (London, England)

Authors' code: Zenodo 10528352 (Apache-2.0), resurfemg/resurfemg (Apache-2.0)

Status: code verified, 192 files readable, 3 matches

[15900] doi:10.1186/s13287-025-04459-3 [paper, data]

Distal electrical stimulation enhances neuromuscular reinnervation and satellite cell differentiation for functional recovery.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[15901] doi:10.1186/s40035-025-00493-6 [paper, data]

Abnormal α-synuclein binds to synaptotagmin 13, impairing extracellular vesicle release in synucleinopathies.

Journal: Translational neurodegeneration

Status: data only, 5 datasets cited

[15902] doi:10.1242/dmm.052256 [paper, data]

P23H rhodopsin accumulation causes transient disruptions to synaptic protein levels in rod photoreceptors in a model of retinitis pigmentosa.

Journal: Disease models & mechanisms

Status: data only, 2 datasets cited

[15903] doi:10.1371/journal.pcbi.1012670 [paper, repository]

Lateralised memory networks may explain the use of higher-order visual features in navigating insects.

Journal: PLoS computational biology

Authors' code: giuliofilippi/fpm-paper-code (GPL-3.0)

Status: code verified, 24 files readable

[15904] doi:10.1371/journal.pcbi.1013056 [paper, repository]

Impact of symmetry in local learning rules on predictive neural representations and generalization in spatial navigation.

Journal: PLoS computational biology

Authors' code: jakeck1/sympredlearning (no license)

Status: code verified, 36 files readable

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