Every paper, by date: page 72

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 72 of 200: 23 June 2025 to 14 June 2025.

Monday, 23 June 2025 (31 papers, 9 on this page)

[15905] doi:10.1371/journal.pone.0322530 [paper, data]

Automated facial feature evaluation system to prevent stress of head fixed mice.

Journal: PloS one

Status: data only, 1 dataset cited

[15906] doi:10.3389/fcell.2025.1612177 [paper]

Rnd3 deletion affects neuroblast behavior through the RhoA/ROCK pathway but not neural stem cells in postnatal mice subventricular zone.

Journal: Frontiers in cell and developmental biology

Status: data only

[15907] doi:10.3390/brainsci15070673 [paper, data]

Empathic Traits Modulate Oscillatory Dynamics Revealed by Time-Frequency Analysis During Body Language Reading.

Journal: Brain sciences

Status: data only, 1 dataset cited

[15908] doi:10.3758/s13415-025-01305-0 [paper]

Investigating the neural and behavioral correlates of the stress-rumination link in healthy humans by modulating the left Dorsolateral Prefrontal Cortex using Theta Burst Stimulation.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request

[15909] doi:10.3758/s13415-025-01314-z [paper]

Cognitive appraisal modulates Theta Burst Stimulation effects on stress-reactive rumination and affect.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request

[15910] doi:10.7554/elife.100666 [paper, repository]

The geometry and dimensionality of brain-wide activity.

Journal: eLife

Authors' code: wzz1999/ERM-scale (no license)

Status: code verified, 25 files readable, 10 matches

[15911] doi:10.7554/elife.104475 [paper, data]

Cognitive control of behavior and hippocampal information processing without medial prefrontal cortex.

Journal: eLife

Status: data only, 1 dataset cited

[15912] doi:10.7554/elife.99478 [paper, repository]

A direct neural signature of serial dependence in working memory.

Journal: eLife

Authors' code: OSF yjc93 (no license)

Status: code verified, 18 files readable, 6 matches

[15913] doi:10.7554/elife.99986 [paper, data]

Brain-derived exosomal hemoglobin transfer contributes to neuronal mitochondrial homeostasis under hypoxia.

Journal: eLife

Status: data only, 1 dataset cited

Saturday, 21 June 2025 (8 papers)

[15914] doi:10.1002/epi4.70084 [paper, data]

Dynamic electro-clinical features in Guanidinoacetate N-methyltransferase deficiency: A familial case series.

Journal: Epilepsia open

Status: data only, 1 dataset cited

[15915] doi:10.1016/j.ynirp.2025.100277 [paper, repository]

Quantitative susceptibility mapping of paramagnetic rim lesions in early multiple sclerosis: A cross-sectional study of brain age and disability.

Journal: Neuroimage. Reports

Authors' code: estenhl/pyment-public (CC-BY-NC-4.0)

Status: code verified, 68 files readable

[15916] doi:10.1038/s44271-025-00265-y [paper, repository]

Pre-stimulus beta power mediates explicit and implicit perceptual biases in distinct cortical areas.

Journal: Communications psychology

Authors' code: CarinaFo/ExPeCoN_ms (MIT), Zenodo 15285840 (MIT)

Status: code verified, 258 files readable, 28 matches

[15917] doi:10.1101/2025.06.20.660741 [paper, repository]

MRI-Based Structural Development of the Human Newborn Hypothalamus

Journal: bioRxiv (preprint)

Authors' code: jerodras/neonate_hypothalamus_seg (GPL-3.0), jerodras (no license)

Status: code verified, 5 files readable, 1 match

[15918] doi:10.1111/epi.18514 [paper]

Automatic detection of hippocampal sclerosis in patients with epilepsy.

Journal: Epilepsia

Status: code on request

[15919] doi:10.1186/s12974-025-03489-1 [paper, data]

Targeting the RAGE-RIPK1 binding site attenuates diabetes-associated cognitive deficits.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[15920] doi:10.1186/s13148-025-01900-5 [paper, data]

A novel approach to enhance glioblastoma multiforme treatment efficacy: non-coding RNA targeted therapy and adjuvant approaches.

Journal: Clinical epigenetics

Status: data only, 1 dataset cited

[15921] doi:10.3390/jimaging11070207 [paper, data]

Optimizing Tumor Detection in Brain MRI with One-Class SVM and Convolutional Neural Network-Based Feature Extraction.

Journal: Journal of imaging

Status: data only, 1 dataset cited

Friday, 20 June 2025 (38 papers)

[15922] doi:10.1002/ana.27285 [paper, repository]

Timing of Changes in Alzheimer's Disease Plasma Biomarkers as Assessed by Amyloid and Tau PET Clocks.

Journal: Annals of neurology

Authors' code: cind/alz-timing-mila-aloma-et-al-2025 (no license)

Status: code verified, 6 files readable, 8 matches

[15923] doi:10.1002/ana.27290 [paper, repository]

Deep Brain Stimulation for VPS16-Related Dystonia: A Multicenter Study.

Journal: Annals of neurology

Authors' code: ahmetofficial/DYT-VPS16-Analyses (no license)

Status: code verified, 26 files readable, 3 matches

[15924] doi:10.1007/s10827-025-00909-2 [paper, repository]

Modeling characteristics of neuronal firing in the thalamocortical network of connections in control and parkinsonian primates.

Journal: Journal of computational neuroscience

Authors' code: DrCaiola/PDModel (no license)

Status: code verified, 3 files readable

[15925] doi:10.1016/j.bbi.2025.06.028 [paper, data]

Chronic intermittent hypoxia drives M1 macrophage polarization in dorsal root ganglia.

Journal: Brain, behavior, and immunity

Status: data only, 1 dataset cited

[15926] doi:10.1016/j.neuroimage.2025.121343 [paper, repository]

Hippocampal subfields in aging: Sex-specific trajectories in structure and hemodynamics.

Journal: NeuroImage

Authors' code: Zenodo 7063098 (other-open), khanlab/hippunfold (MIT)

Status: code verified, 68 files readable, 2 matches

[15927] doi:10.1021/acsomega.5c03751 [paper, data]

Serum Pharmacology Combined with Network Pharmacology Reveals the Effects and Mechanisms of Ganmai Dazao Decoction in the Treatment of Depression.

Journal: ACS omega

Status: data only, 2 datasets cited

[15928] doi:10.1038/s41380-025-03086-x [paper, repository]

Identifying brain functional subtypes and corresponding task performance profiles in autism spectrum disorder.

Journal: Molecular psychiatry

Authors' code: Jfortin1/ComBatHarmonization (no license), canlab/Lindquist_Dynamic_Correlation (no license), pcntoolkit.readthedocs.io (no license)

Status: code verified, 176 files readable

[15929] doi:10.1038/s41531-025-01048-2 [paper, data]

Dopamine and cortical neurons with different Parkinsonian mutations show variation in lysosomal and mitochondrial dysfunction.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[15930] doi:10.1038/s41598-025-04166-2 [paper, repository]

Insights on the neurocognitive mechanisms underlying hippocampus-dependent memory impairment in COVID-19.

Journal: Scientific reports

Authors' code: celstark/MST (no license)

Status: code verified, 21 files readable, 2 matches

[15931] doi:10.1038/s41598-025-04511-5 [paper, repository]

Effective workflow from multimodal MRI data to model-based prediction.

Journal: Scientific reports

Authors' code: kyesam-jung/model-based-prediction (MIT)

Status: code verified, 12 files readable, 10 matches

[15932] doi:10.1038/s41598-025-05235-2 [paper, data]

No effect of novel exploration on the consolidation of extinction learning in human context conditioning.

Journal: Scientific reports

Status: data only, 1 dataset cited

[15933] doi:10.1038/s41598-025-97509-y [paper, repository]

The role of cognitive and brain reserve in the clinical presentation and progression of amyotrophic lateral sclerosis.

Journal: Scientific reports

Authors' code: james-cole/brainageR (LGPL-3.0), OSF td2xa (no license)

Status: code verified, 9 files readable

[15934] doi:10.1073/pnas.2415288122 [paper, repository]

Basic interactions responsible for thymus function explain the convoluted medulla shape.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 15570891 (CC-BY-4.0)

Status: code verified, 22 files readable

[15935] doi:10.1073/pnas.2420157122 [paper, data]

Structure of the virulence-associated <i>Neisseria meningitidis</i> filamentous bacteriophage MDAΦ.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 4 datasets cited

[15936] doi:10.1117/1.nph.12.s2.s22802 [paper, repository]

Nitric oxide is not responsible for initial sensory-induced neurovascular coupling response in the barrel cortex of lightly anesthetized mice.

Journal: Neurophotonics

Authors' code: Zenodo 6580556 (CC-BY-NC-4.0)

Status: code verified, 8 files readable, 4 matches

[15937] doi:10.1126/sciadv.adr3467 [paper, repository]

Opposite regulation of medullary pain-related projection neuron excitability in acute and chronic pain.

Journal: Science advances

Authors' code: doi:10.5061/dryad.bnzs7h4m5 (no license)

Status: code verified

[15938] doi:10.1162/imag.a.42 [paper, repository]

Functional cerebello-cortico-limbic connectivity in aggression: A resting-state 7T fMRI study in healthy volunteers.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: JosePMarques/MP2RAGE-related-scripts (GPL-3.0)

Status: code verified, 39 files readable, 2 matches

[15939] doi:10.1162/imag.a.45 [paper, repository]

Automatic segmentation of spinal cord lesions in MS: A robust tool for axial T2-weighted MRI scans.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: spinalcordtoolbox/spinalcordtoolbox (LGPL-3.0), ivadomed/model-seg-ms-axial-t2w (MIT)

Status: code verified, 275 files readable, 17 matches

[15940] doi:10.1162/imag.a.47 [paper]

Comparative evaluation of image registration techniques in functional ultrasound imaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[15941] doi:10.1162/imag.a.50 [paper]

Sensory integration processes characterize concussed athletes with balance deficits.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[15942] doi:10.1162/imag.a.54 [paper, repository]

Functional brain mapping using whole-head very high-density diffuse optical tomography.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: nitrc.org/projects/neurodot (no license), WUSTL-CulverLab/VHD-System-Paper (MIT)

Status: code verified, 2 files readable

[15943] doi:10.1162/imag.a.55 [paper, repository]

Thought contents during rest account for functional connectivity-behavior associations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 5hkdg (no license)

Status: code verified, 5 files readable, 2 matches

[15944] doi:10.1186/s11689-025-09626-4 [paper, data]

Common and rare variant analyses implicate late-infancy cerebellar development and immune genes in ADHD.

Journal: Journal of neurodevelopmental disorders

Status: data only, 1 dataset cited

[15945] doi:10.1186/s13148-025-01905-0 [paper, data]

Identification of diagnostic DNA methylation markers in the blood of Japanese Alzheimer's disease patients using methylation capture sequencing.

Journal: Clinical epigenetics

Status: data only, 1 dataset cited

[15946] doi:10.1186/s40246-025-00779-w [paper, data]

Update of the sideroflexin (SLC56) gene family.

Journal: Human genomics

Status: data only, 1 dataset cited

[15947] doi:10.1371/journal.pcbi.1013075 [paper, repository]

Computations that sustain neural feature selectivity across processing stages.

Journal: PLoS computational biology

Authors' code: rjrowekamp/quad-quad (no license)

Status: code verified, 14 files readable, 7 matches

[15948] doi:10.1371/journal.pdig.0000874 [paper, repository]

Efficient slice anomaly detection network for 3D brain MRI Volume.

Journal: PLOS digital health

Authors' code: Jarvisarmy/SimpleSliceNet (no license)

Status: code verified, 23 files readable, 11 matches

[15949] doi:10.21203/rs.3.rs-6735294/v1 [paper, repository]

An Open-Source Deep Learning-Based GUI Toolbox for Automated Auditory Brainstem Response Analyses (ABRA)

Journal: Research Square (preprint)

Authors' code: Zenodo 15054979 (CC-BY-4.0), Zenodo 14191510 (CC-BY-4.0), ucsdmanorlab/abranalysis (no license), fedeceri85/abrwaveanalyser (Apache-2.0)

Status: code verified, 39 files readable, 12 matches

[15950] doi:10.21203/rs.3.rs-6916662/v1 [paper]

A transient receptor potential vanilloid 1-dependent corneal-trigeminal neuroinflammatory circuit promotes corneal neuropathy

Journal: Research Square (preprint)

Status: data only

[15951] doi:10.21769/bioprotoc.5341 [paper, repository]

Method for Extracellular Electrochemical Impedance Spectroscopy on Epithelial Cell Monolayers.

Journal: Bio-protocol

Authors' code: chien0507/extracellularEIS (MIT)

Status: code verified, 12 files readable, 2 matches

[15952] doi:10.3389/fneur.2025.1567344 [paper, repository]

Insights into gait performance in Parkinson's disease via latent features of deep graph neural networks.

Journal: Frontiers in neurology

Authors' code: ICEJM1020/GaitInsight (MIT)

Status: code verified, 45 files readable, 3 matches

[15953] doi:10.3389/fnmol.2025.1554802 [paper, data]

Silencing ATF3 mediates mitochondrial homeostasis and improves ischemic stroke through regulating the MAPK signaling pathway.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[15954] doi:10.3389/fonc.2025.1592685 [paper, data]

Multi-omics profiling of TGF-β isoforms and regulatory miRNAs in astrocytic tumors reveals TGF-β-3 as a prognostic biomarker.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[15955] doi:10.3389/fphar.2025.1601689 [paper, data]

Network pharmacology-based prediction and "gut microbiota-inflammation-brain axis" validation of the active ingredients and potential mechanisms of <i>Plantagins Herba</i> for treating diabetes-related cognitive dysfunction.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[15956] doi:10.3390/ijms26135931 [paper, data]

EGR3 Promotes Glioblastoma Cell Growth with Upregulation of MYC and CDK1.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[15957] doi:10.3758/s13415-025-01319-8 [paper]

Neural reactivity to infant faces and trait mindfulness as prospective predictors of postpartum depressive symptoms.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request

[15958] doi:10.7150/thno.112396 [paper]

Unraveling α-synuclein and amylin co-aggregation: pathological insights and biomarker development for Parkinson's disease.

Journal: Theranostics

Status: code on request

[15959] doi:10.7554/elife.93191 [paper, repository]

Evidence from pupillometry, fMRI, and RNN modelling shows that gain neuromodulation mediates task-relevant perceptual switches.

Journal: eLife

Authors' code: ShineLabUSYD/AmbiguousFigures (no license), OSF uvykp (no license)

Status: code verified, 31 files readable, 4 matches

Thursday, 19 June 2025 (39 papers)

[15960] doi:10.1002/advs.202415508 [paper, data]

Mesenchymal Stromal Cell Secretome and Its Key Bioactive Metabolites Induce Long-Term Neuroprotection After Traumatic Brain Injury in Mice.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[15961] doi:10.1002/advs.202500689 [paper, data]

3D Brain Vascular Niche Model Captures Glioblastoma Infiltration, Dormancy, and Gene Signatures.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[15962] doi:10.1007/s11548-025-03401-5 [paper, repository]

Super-resolution for localizing electrode grids as small, deformable objects during epilepsy surgery using augmented reality headsets.

Journal: International journal of computer assisted radiology and surgery

Authors' code: Hizirwan/AR-ioECOG-Pose-Estimation (MIT)

Status: code verified, 20 files readable, 3 matches

[15963] doi:10.1016/j.cell.2025.05.031 [paper, data]

Cholinergic neuronal activity promotes diffuse midline glioma growth through muscarinic signaling.

Journal: Cell

Status: code on request, 1 dataset cited

[15964] doi:10.1016/j.celrep.2025.115853 [paper, repository]

Patterns of pathological tau deposition reflect the dynamics of cortical brain activity.

Journal: Cell reports

Authors' code: neuroanatomyandconnectivity/gradient_analysis (MIT), feng5132308003/Patterns-of-pathological-tau-deposition-reflect-the-dynamics-of-cortical-brain-activity (no license)

Status: code verified, 28 files readable

[15965] doi:10.1016/j.celrep.2025.115863 [paper, repository]

An alternative neural basis underlying leptin resistance.

Journal: Cell reports

Authors' code: addgene.org/qingchun_tong (no license)

Status: code verified

[15966] doi:10.1016/j.celrep.2025.115874 [paper, data]

Mu-opioid receptor activation potentiates excitatory transmission at the habenulo-peduncular synapse.

Journal: Cell reports

Status: data only, 1 dataset cited

[15967] doi:10.1016/j.isci.2025.112936 [paper]

Parent-offspring brain similarity: Specificities and commonalities among sex combinations-the TRIO study.

Journal: iScience

Status: code on request

[15968] doi:10.1016/j.isci.2025.112942 [paper, repository]

Neuronal synchronization in <i>Dr</i> <i>oso</i> <i>phila</i>.

Journal: iScience

Authors' code: mwappner/FlyClock (no license)

Status: code verified, 18 files readable, 7 matches

[15969] doi:10.1016/j.isci.2025.112967 [paper, repository]

Contextual responses drive a unique laminar signature in human V1.

Journal: iScience

Authors' code: gjheij/linescanning (MIT), gjheij/lineexps (MIT), spinoza-centre/holeresponse (MIT)

Status: code verified, 146 files readable, 10 matches

[15970] doi:10.1016/j.jare.2025.06.046 [paper, repository]

Genetic mechanisms, brain structures, and peripheral biomarkers mediate the relationship between physical frailty and neuropsychiatric disorders.

Journal: Journal of advanced research

Authors' code: peiyanggao/UKB_Frailty_BrainHealth (no license)

Status: empty repository, 1 file readable

[15971] doi:10.1016/j.neuroimage.2025.121319 [paper, repository]

Dynamic Causal Tractography Analysis of Auditory Descriptive Naming: An Intracranial Study of 106 Patients.

Journal: NeuroImage

Authors' code: a8k8nn0/TractographyAtlas (no license), Zenodo 15273855 (CC-BY-4.0)

Status: code verified, 14 files readable

[15972] doi:10.1016/j.stemcr.2025.102534 [paper, data]

Cholinergic neuron-to-glioblastoma synapses in a human iPSC-derived co-culture model.

Journal: Stem cell reports

Status: code on request, 1 dataset cited

[15973] doi:10.1016/j.stemcr.2025.102537 [paper, repository]

APOE4 impacts cortical neurodevelopment and alters network formation in human brain organoids.

Journal: Stem cell reports

Authors' code: mgiugliano/SPiQ (CC0-1.0)

Status: code verified, 14 files readable

[15974] doi:10.1016/j.stemcr.2025.102539 [paper, data]

BMP, MEK, and WNT inhibition with NGN2 expression for rapid generation of hiPSC-derived neurons amenable to regional patterning.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[15975] doi:10.1038/s41398-025-03427-y [paper, repository]

Theta oscillation synchronize VTA and mPFC during ethanol-induced conditioned place preference and stress-evoked anxiety.

Journal: Translational psychiatry

Authors' code: chronux.org (no license), brain-smart.org (no license)

Status: code verified

[15976] doi:10.1038/s41467-025-60363-7 [paper, data]

TGFα controls checkpoints in CNS resident and infiltrating immune cells to promote resolution of inflammation.

Journal: Nature communications

Status: data only, 1 dataset cited

[15977] doi:10.1038/s41467-025-60802-5 [paper, repository]

Ubiquitous memory augmentation via mobile multimodal embedding system.

Journal: Nature communications

Authors' code: caidongqi/mobile-search-engine (CC-BY-NC-SA-4.0), UbiquitousLearning/mllm (MIT), Zenodo 15379675 (CC-BY-4.0), audio-captioning/clotho-dataset (other)

Status: code verified, 1,153 files readable

[15978] doi:10.1038/s42003-025-08341-z [paper, repository]

Harmonizing network-based statistics across different atlases in brain connectome analysis.

Journal: Communications biology

Authors' code: CAIMI-WEIGroup/TACOS (CC-BY-NC-SA-4.0), Zenodo 15588734 (CC-BY-4.0)

Status: code verified, 10 files readable, 3 matches

[15979] doi:10.1038/s43856-025-00957-w [paper, repository]

Temporal trends of blood-based markers in various psychiatric disorders and their cross-sectional brain structure associations.

Journal: Communications medicine

Authors' code: SnowSunshine-gqp/blood-based-biomarkers_temporal-trends (no license), Zenodo 15532293 (CC-BY-4.0)

Status: code verified, 52 files readable, 3 matches

[15980] doi:10.1038/s44318-025-00487-0 [paper]

Copine-6 is a TRPM3 escort protein controlling the sensitivity of sensory neurons to noxious heat.

Journal: The EMBO journal

Status: data only

[15981] doi:10.1093/braincomms/fcaf246 [paper]

Partial least squares multimodal analysis of brain network correlates of language deficits in aphasia.

Journal: Brain communications

Status: code on request

[15982] doi:10.1093/braincomms/fcaf249 [paper, repository]

Cerebral blood flow is associated with plasma and PET biomarkers of tau pathology in middle age.

Journal: Brain communications

Authors' code: OSF frbkj (no license)

Status: code verified

[15983] doi:10.1093/geroni/igaf062 [paper]

From fingers to brain: virtual reality-based test capturing fine hand movements predicts cognitive function in older adults.

Journal: Innovation in aging

Status: code on request

[15984] doi:10.1109/jstqe.2025.3581407 [paper, repository]

Validation of the Linearity in Image Reconstruction Methods for Speckle Contrast Optical Tomography.

Journal: IEEE journal of selected topics in quantum electronics : a publication of the IEEE Lasers and Electro-optics Society

Authors' code: BUNPC/SCOT_Rytov (no license)

Status: code verified, 4 files readable, 1 match

[15985] doi:10.1172/jci185001 [paper, data]

Cross-species efficacy of AAV-mediated ARSA replacement for metachromatic leukodystrophy.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[15986] doi:10.1177/1877718x251348669 [paper, data]

Unveiling the neural network of freezing of gait in Parkinson's disease: A coordinate-based network study.

Journal: Journal of Parkinson's disease

Status: data only, 1 dataset cited

[15987] doi:10.1186/s10020-025-01301-7 [paper]

FCGR2B knockdown alleviates diabetes-induced cognitive dysfunction by altering neuronal excitability.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only

[15988] doi:10.1186/s12935-025-03868-x [paper, data]

LncRNA H19 acts as a ceRNA to promote glioblastoma malignancy by sponging miR-19b-3p and upregulating SERPINE1.

Journal: Cancer cell international

Status: data only, 1 dataset cited

[15989] doi:10.1192/bjp.2025.135 [paper, repository]

Reproducible sex differences in personalised functional network topography in youth.

Journal: The British journal of psychiatry : the journal of mental science

Authors' code: ashleychari.github.io/abcd_sex_pfn_replication (no license)

Status: code verified

[15990] doi:10.1371/journal.pcbi.1012603 [paper, repository]

Predicting neuronal firing from calcium imaging using a control theoretic approach.

Journal: PLoS computational biology

Authors' code: N-Rondoni/slugFind (Apache-2.0)

Status: code verified, 35 files readable, 3 matches

[15991] doi:10.3389/fmed.2025.1618550 [paper, data]

Transfer deep learning and explainable AI framework for brain tumor and Alzheimer's detection across multiple datasets.

Journal: Frontiers in medicine

Status: data only, 2 datasets cited

[15992] doi:10.3389/fmicb.2025.1541958 [paper, data]

Effect of acupuncture at Back-Shu points on gut microbiota in insomnia model rats based on metagenomic sequencing technology.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[15993] doi:10.3389/fnins.2025.1570783 [paper, repository]

Modular architecture confers robustness to damage and facilitates recovery in spiking neural networks modeling <i>in vitro</i> neurons.

Journal: Frontiers in neuroscience

Authors' code: orlandi/netcal (MIT), orlandi/te-causality (gnu), akkeh/nc_sim (GPL-3.0), Zenodo 1119026 (MIT)

Status: code verified, 2,403 files readable, 2 matches

[15994] doi:10.3389/frai.2025.1590599 [paper, data]

Biologically inspired hybrid model for Alzheimer's disease classification using structural MRI in the ADNI dataset.

Journal: Frontiers in artificial intelligence

Status: data only, 2 datasets cited

[15995] doi:10.4103/nrr.nrr-d-24-00890 [paper]

Cerebral dopamine neurotrophic factor for spinal cord injury: Targeting JNK1 to relieve neuroinflammation and improve neural repair.

Journal: Neural regeneration research

Status: data only

[15996] doi:10.4103/nrr.nrr-d-24-01055 [paper, data]

MCC950 suppresses NLRP3-dependent neuroinflammation and ameliorates cognitive decline in a rat model of cerebral small vessel disease.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[15997] doi:10.4103/nrr.nrr-d-24-01260 [paper, data]

Role of miRNAs from mesenchymal stem cell-derived extracellular vesicles in neuroinflammation and behavioral impairments induced by chronic alcohol consumption in female mice.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[15998] doi:10.5498/wjp.v15.i6.105555 [paper]

Neural correlates of rumination in remitted depressive episodes: Brain network connectivity and topology analyses.

Journal: World journal of psychiatry

Status: code on request

Wednesday, 18 June 2025 (54 papers)

[15999] doi:10.1002/mrm.30606 [paper, repository]

High-density MRI coil arrays with integrated field monitoring systems for human connectome mapping.

Journal: Magnetic resonance in medicine

Authors' code: keyarray/connectinvivocoil (no license)

Status: empty repository

[16000] doi:10.1016/j.dib.2025.111800 [paper, data]

Micro-RNA expression data from common carp brain cells infected by Cyvirus cyprinidallo3 at permissive and non-permissive temperatures.

Journal: Data in brief

Status: data only, 1 dataset cited

[16001] doi:10.1016/j.isci.2025.112914 [paper, repository]

Following the robot's lead: Predicting human and robot movement from EEG in a motor learning HRI task.

Journal: iScience

Authors' code: atlaie/human-robot-interaction (no license)

Status: code verified, 1 file readable, 2 matches

[16002] doi:10.1016/j.isci.2025.112923 [paper]

The lateral habenula contributes to regulation of body temperature.

Journal: iScience

Status: code on request

[16003] doi:10.1016/j.isci.2025.112928 [paper, repository]

Of mice and men: Dendritic architecture differentiates human from mouse neuronal networks.

Journal: iScience

Authors' code: BlueBrain/NeuroM (BSD-3-Clause), BlueBrain/TMD (LGPL-3.0), danielaegassan/connectome_analysis (AGPL-3.0), JasonPSmith/flagser-count (MIT)

Status: code verified, 218 files readable, 5 matches

[16004] doi:10.1016/j.isci.2025.112929 [paper, repository]

Spiner, deep learning-based automated detection of spiral ganglion neurons in intact cochleae.

Journal: iScience

Authors' code: Zenodo 15273059 (CC-BY-4.0), yccc12/spiner (other)

Status: code verified, 136 files readable, 1 match

[16005] doi:10.1016/j.isci.2025.112931 [paper]

Deficiency of Rab26 causes behavioral defects in mice through impaired trafficking of serotonin (5-HT) transporter.

Journal: iScience

Status: code on request

[16006] doi:10.1016/j.nicl.2025.103814 [paper, repository]

Medulla oblongata dominated synaptic density network degeneration in amyotrophic lateral sclerosis.

Journal: NeuroImage. Clinical

Authors' code: RongLi1120/KLSE (no license)

Status: code verified, 4 files readable, 1 match

[16007] doi:10.1016/j.nicl.2025.103828 [paper, repository]

The relationship between brain perfusion and structure in youth with obesity, with and without type 2 diabetes: A pilot study.

Journal: NeuroImage. Clinical

Authors' code: markallenthornton/MatlabTFCE (MIT)

Status: code verified, 57 files readable, 3 matches

[16008] doi:10.1016/j.xpro.2025.103902 [paper]

Protocol for sex-specific isolation of microglia, oligodendrocyte precursor cells, and astrocytes from neonatal rats using shake-off technique.

Journal: STAR protocols

Status: code on request

[16009] doi:10.1017/gmb.2025.10005 [paper, repository]

Sex hormones and diets rich in polyunsaturated ω-6/ω-3 fatty acids modify microbiota distinctly in a mouse model of Alzheimer's disease.

Journal: Gut microbiome (Cambridge, England)

Authors' code: neufeld/pandaseq (GPL-3.0)

Status: code verified, 85 files readable

[16010] doi:10.1038/s41467-025-59299-9 [paper, data]

Cryo-EM structure of a blue-shifted channelrhodopsin from Klebsormidium nitens.

Journal: Nature communications

Status: data only, 1 dataset cited

[16011] doi:10.1038/s41531-025-00990-5 [paper, repository]

Modeling and optimizing deep brain stimulation to enhance gait in Parkinson's disease: personalized treatment with neurophysiological insights.

Journal: NPJ Parkinson's disease

Authors' code: openmind-consortium/Analysis-rcs-data (no license)

Status: code verified, 157 files readable, 3 matches

[16012] doi:10.1038/s41586-025-09083-y [paper, repository]

Single-cell transcriptomic and chromatin dynamics of the human brain in PTSD.

Journal: Nature

Authors' code: Zenodo 15186498 (CC-BY-4.0), mjgirgenti/PTSDsnDLPFC (MIT)

Status: code verified, 167 files readable, 31 matches

[16013] doi:10.1038/s41586-025-09135-3 [paper, repository]

Bogong moths use a stellar compass for long-distance navigation at night.

Journal: Nature

Authors' code: stanleyheinze/Starry_sky_code (no license)

Status: code verified, 24 files readable, 5 matches

[16014] doi:10.1038/s41586-025-09151-3 [paper, repository]

Morphodynamics of human early brain organoid development.

Journal: Nature

Authors' code: morphometrics/morphometrics (BSD-3-Clause), quadbio/morphodynamics_human_brain_organoid (MIT), Zenodo 15149153 (MIT), Zenodo 15149154 (CC-BY-4.0)

Status: code verified, 432 files readable, 40 matches

[16015] doi:10.1038/s41586-025-09180-y [paper, repository]

Unsupervised pretraining in biological neural networks.

Journal: Nature

Authors' code: MouseLand/zhong-et-al-2025 (GPL-3.0)

Status: code verified, 11 files readable, 5 matches

[16016] doi:10.1038/s41746-025-01714-y [paper]

Predicting outcomes after moderate and severe traumatic brain injury using artificial intelligence: a systematic review.

Journal: NPJ digital medicine

Status: code on request

[16017] doi:10.1073/pnas.2423697122 [paper, repository]

Reactivation of an embryonic cardiac neural crest transcriptional profile during zebrafish heart regeneration.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 227391 (CC-BY-4.0), Martik-Lab/DhillonRichardsonHaugan_PNAS2024 (no license)

Status: empty repository

[16018] doi:10.1073/pnas.2504224122 [paper, repository]

Reciprocal interaction between cortical SST and PV interneurons in top-down regulation of retinothalamic refinement.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: genecell/PIASO (BSD-3-Clause)

Status: code verified, 21 files readable

[16019] doi:10.1093/braincomms/fcaf227 [paper, repository]

Changes in glucose metabolism in essential tremor: within and beyond the cerebello-thalamo-cortical circuit.

Journal: Brain communications

Authors' code: jrdalenberg/PETBrainPreprocessing (Apache-2.0)

Status: code verified, 9 files readable, 3 matches

[16020] doi:10.1093/braincomms/fcaf247 [paper, repository]

Increased sensorimotor noise in Tourette syndrome.

Journal: Brain communications

Authors' code: KaterinaGial/Increased-sensorimotor-noise-in-Tourette-syndrome (no license)

Status: dead link

[16021] doi:10.1093/pnasnexus/pgaf204 [paper, repository]

Deconstructing neural predictors of risky choice.

Journal: PNAS nexus

Authors' code: OSF fvd69 (no license)

Status: code verified, 24 files readable, 1 match

[16022] doi:10.1101/2025.06.17.25329677 [paper, repository]

Molecular, haemodynamic and functional effects of LSD in the human brain

Journal: medRxiv (preprint)

Authors' code: kristian1801/ica-segmentation-tool (MIT), MarkVestergaard/PCMCalculator (MIT), Pneumaethylamine/dOccLS (GPL-3.0), anders-s-olsen/CopBET (no license)

Status: code verified, 471 files readable, 24 matches

[16023] doi:10.1101/2025.06.17.659820 [paper, repository]

Population-specific brain charts reveal Chinese-Western differences in neurodevelopmental trajectories

Journal: bioRxiv (preprint)

Authors' code: sunlianglong/brainchart-fc-lifespan (no license), sunlianglong/Population-specific-brain-charts (CC-BY-NC-SA-4.0), gitlab.qunex.yale.edu/ (no license), DCAN-Labs/abcd-hcp-pipeline (BSD-3-Clause), BioMedIA/dhcp-structural-pipeline (Apache-2.0), iBEAT-V2/iBEAT-V2.0-Docker (no license), ecr05/MSM_HOCR (no license), brainchart/Lifespan (no license)

Status: code verified, 1,363 files readable, 7 matches

[16024] doi:10.1126/sciadv.adt3075 [paper, data]

FAM50A drives breast cancer brain metastasis through interaction with C9ORF78 to enhance ʟ-asparagine production.

Journal: Science advances

Status: data only, 1 dataset cited

[16025] doi:10.1126/sciadv.adu6050 [paper, data]

Differential pathological dynamics triggered by distinct Parkinson patient-derived α-synuclein extracts in nonhuman primates.

Journal: Science advances

Status: data only, 1 dataset cited

[16026] doi:10.1126/sciadv.adu9133 [paper, data]

Mobile human brain imaging using functional ultrasound.

Journal: Science advances

Status: data only, 1 dataset cited

[16027] doi:10.1159/000546716 [paper, data]

Structural Connectivity of the Basal Ganglia from Patient-Individual Tractography Is Key for Understanding the Effects of Deep Brain Stimulation in Parkinson's Disease.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[16028] doi:10.1162/imag.a.37 [paper, repository]

Consistency of resting-state correlations between fMRI networks and EEG band power.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: LaSEEB/eeg_fmri_consistency (no license)

Status: code verified, 24 files readable, 3 matches

[16029] doi:10.1162/imag.a.44 [paper, data]

Rhythmic activity in resting-state EEG predicts trait anxiety.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request, 1 dataset cited

[16030] doi:10.1162/imag.a.49 [paper, repository]

Mapping the aggregate g-ratio of white matter tracts using multi-modal MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: tardiflab/mwcpipe (GPL-3.0)

Status: code verified, 844 files readable, 16 matches

[16031] doi:10.1162/nol_a_00167 [paper, repository]

Exploring the Relationship Between White Matter Tracts and Resting-State Functional Language Lateralization Index.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF enjyd (no license)

Status: code verified, 1 file readable, 1 match

[16032] doi:10.1162/nol_a_00168 [paper, repository]

Structural Development of Speech Networks in Young Children: A Cross-Sectional Study.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: anthonystevendick/curtis_srt (no license)

Status: code verified, 1 file readable, 1 match

[16033] doi:10.1162/nol_a_00169 [paper, repository]

Reduced Neural Distinctiveness of Speech Representations in the Middle-Aged Brain.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF jqf8t (no license)

Status: empty repository, 1 file readable

[16034] doi:10.1177/15357597251332191 [paper, repository]

Imaging Epilepsy: Past, Passing, and to Come.

Journal: Epilepsy currents

Authors' code: MELDProject/meld_graph (other)

Status: code verified, 108 files readable

[16035] doi:10.1186/s13195-025-01774-y [paper, repository]

Proteome-wide association studies using summary pQTL data of brain, CSF, and plasma identify 30 risk genes of Alzheimer's disease dementia.

Journal: Alzheimer's research & therapy

Authors' code: yuanzhongshang/PMR (no license), tingyhu45/PWAS_OTTERS (no license)

Status: code verified, 18 files readable

[16036] doi:10.1371/journal.pbio.3003242 [paper, repository]

Auditory cortex neurons that encode negative prediction errors respond to omissions of sounds in a predictable sequence.

Journal: PLoS biology

Authors' code: Zenodo 15531880 (MIT), Zenodo 15532335 (CC-BY-4.0), amityar01/peon (MIT), kernfel/omission-responsive-neurons (no license)

Status: code verified, 36 files readable, 8 matches

[16037] doi:10.1523/jneurosci.0251-25.2025 [paper, repository]

Attention Alters Population Spatial Frequency Tuning.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF meq9n (no license)

Status: empty repository

[16038] doi:10.31083/ap43988 [paper]

Network Specificity in Predicting Childhood Trauma Characteristics Using Effective Connectivity.

Journal: Alpha psychiatry

Status: code on request

[16039] doi:10.3389/fgene.2025.1567951 [paper, data]

Epigenetic mechanisms linking atherosclerosis to ischemic stroke: insights from DNA methylation and transcriptome integration.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[16040] doi:10.3389/fncel.2025.1590157 [paper, repository]

Average miniature post-synaptic potential size is inversely proportional to membrane capacitance across neocortical pyramidal neurons of different sizes.

Journal: Frontiers in cellular neuroscience

Authors' code: gin.g-node.org/dervinism/minis-benchmarking-data2 (no license), doi:10.12751/g-node.mvsy4j (no license), gin.g-node.org/dervinism/minis-quantal-analysis-data (no license), dervinism/minis (no license), Zenodo 14573132 (CC-BY-4.0), dervinism/minis-quantal-analysis (GPL-3.0), Zenodo 14288653 (GPL-3.0)

Status: code verified, 294 files readable, 6 matches

[16041] doi:10.3389/fncel.2025.1598016 [paper, repository]

A novel method for reliably measuring miniature and spontaneous postsynaptic events in whole-cell patch clamp recordings in the central nervous system.

Journal: Frontiers in cellular neuroscience

Authors' code: gin.g-node.org/dervinism/minis-benchmarking-data2 (no license), dervinism/minis-benchmarking (GPL-3.0), dervinism/minis (no license)

Status: code verified, 177 files readable, 19 matches

[16042] doi:10.3389/fnetp.2025.1585019 [paper, repository]

Yale Brain Atlas to interactively explore multimodal structural and functional neuroimaging data.

Journal: Frontiers in network physiology

Authors' code: yalebrainatlas/yalebrainatlas (MIT)

Status: code verified, 95 files readable, 2 matches

[16043] doi:10.3389/fneur.2025.1509668 [paper, data]

Thalamus and consciousness: a systematic review on thalamic nuclei associated with consciousness.

Journal: Frontiers in neurology

Status: data only, 2 datasets cited

[16044] doi:10.3389/fnhum.2025.1607022 [paper, data]

Effects of a single tDCS with mirror therapy stimulation on hand function in healthy individuals.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[16045] doi:10.3389/fnins.2025.1556570 [paper, data]

NEXMIF overexpression is associated with autism-like behaviors and alterations in dendritic arborization and spine formation in mice.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[16046] doi:10.3389/fpsyg.2025.1569514 [paper, repository]

The convergent neuroscience of Christian prayer and attachment relationships in the context of mental health: a systematic review.

Journal: Frontiers in psychology

Authors' code: OSF hyzpn (no license)

Status: empty repository

[16047] doi:10.3389/frai.2025.1549085 [paper, repository]

Elucidating linear programs by neural encodings.

Journal: Frontiers in artificial intelligence

Authors' code: olfub/XLP (no license)

Status: code verified, 14 files readable, 5 matches

[16048] doi:10.3389/frai.2025.1579251 [paper, repository]

Regularization by neural style transfer for MRI field-transfer reconstruction with limited data.

Journal: Frontiers in artificial intelligence

Authors' code: GuoyaoShen/RNST-Regularization_by_NST (no license)

Status: code verified, 10 files readable, 1 match

[16049] doi:10.3390/biology14060717 [paper, repository]

Spatial Transcriptomics Reveals Regional and Temporal Dynamics of Gene Expression in the Mouse Brain Across Development and Aging.

Journal: Biology

Authors' code: bconacher/spatial-transcriptomics-mouse-aging (no license)

Status: code verified, 3 files readable, 14 matches

[16050] doi:10.3390/diagnostics15121552 [paper, data]

The Teacher-Assistant-Student Collaborative and Competitive Network for Brain Tumor Segmentation with Missing Modalities.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[16051] doi:10.3390/jimaging11060202 [paper, data]

MedSAM/MedSAM2 Feature Fusion: Enhancing nnUNet for 2D TOF-MRA Brain Vessel Segmentation.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[16052] doi:10.7554/elife.96152 [paper, data]

In mice, discrete odors can selectively promote the neurogenesis of sensory neuron subtypes that they stimulate.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 17 June 2025 (27 papers)

[16053] doi:10.1007/s12021-025-09730-9 [paper, repository]

Cerebellar Micro Complex Model Using Histologic Boolean Mapping Simulates Adaptive Motor Control.

Journal: Neuroinformatics

Authors' code: gregorph/HBMVNR (AGPL-3.0)

Status: code verified, 4 files readable

[16054] doi:10.1016/j.celrep.2025.115827 [paper, repository]

Brain-wide connectivity and novelty response of the dorsal endopiriform nucleus in mice.

Journal: Cell reports

Authors' code: Zenodo 15238592 (CC-BY-4.0), Zenodo 15238751 (GPL-3.0), yongsookimlab/whole_mouse_brain_3d_cell_counting_pipeline (no license)

Status: code verified, 134 files readable, 4 matches

[16055] doi:10.1016/j.celrep.2025.115845 [paper, repository]

The spinal premotor network driving scratching flexor and extensor alternation.

Journal: Cell reports

Authors' code: Zenodo 15328238 (CC-BY-4.0), ymch815/spinal-premotor-network (no license)

Status: code verified, 36 files readable, 4 matches

[16056] doi:10.1016/j.isci.2025.112920 [paper, repository]

Acute alcohol in prefrontal cortex is characterized by enhanced inhibition that transitions to excitation.

Journal: iScience

Authors' code: LapishLab (no license), Zenodo 15040430 (CC-BY-4.0), Zenodo 15040426 (CC-BY-4.0), LapishLab/acuteEthanolManuscript (no license)

Status: code verified, 60 files readable, 10 matches

[16057] doi:10.1016/j.isci.2025.112921 [paper, data]

Distinct roles of two thalamostriatal systems in visually triggered decision-making in common marmosets.

Journal: iScience

Status: code on request, 1 dataset cited

[16058] doi:10.1038/s41597-025-05187-2 [paper, repository]

An open-access EEG dataset for speech decoding: Exploring the role of articulation and coarticulation.

Journal: Scientific data

Authors' code: OSF 3zfku (no license), Zenodo 15281494 (CC-BY-4.0), mcjpedro/speech_decoding (no license)

Status: code verified, 24 files readable

[16059] doi:10.1038/s41746-025-01773-1 [paper, repository]

Detection of epileptic spasms using foundational AI and smartphone videos.

Journal: NPJ digital medicine

Authors' code: facebookresearch/hiera (Apache-2.0), microsoft/LoRA (MIT)

Status: code verified, 910 files readable, 1 match

[16060] doi:10.1038/s42003-025-08194-6 [paper, repository]

Drug treatment alters performance in a neural microphysiological system of information processing.

Journal: Communications biology

Authors' code: OSF xwf7v (no license)

Status: code verified, 4 files readable, 5 matches

[16061] doi:10.1038/s44318-025-00484-3 [paper]

Lysine myristoylation mediates long-term potentiation via membrane enrichment of synaptic plasticity effectors.

Journal: The EMBO journal

Status: code on request

[16062] doi:10.1073/pnas.2422281122 [paper, repository]

Linking pregnancy- and birth-related risk factors to a multivariate fusion of child cortical structure.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF xeufj (no license)

Status: code verified, 24 files readable, 9 matches

[16063] doi:10.1073/pnas.2423560122 [paper, data]

The brain computes dynamic facial movements for emotion categorization using a third pathway.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[16064] doi:10.1073/pnas.2503677122 [paper, data]

Gut sulfide metabolism modulates behavior and brain bioenergetics.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[16065] doi:10.1080/07853890.2025.2520394 [paper, data]

Nonsuicidal self-injury prediction with pain-processing neural circuits using interpretable graph neural network.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[16066] doi:10.1093/braincomms/fcaf178 [paper, repository]

Stratification of surgical outcomes in trigeminal neuralgia using multimodal data.

Journal: Brain communications

Authors' code: latypovt/TN_Categories (no license)

Status: dead link

[16067] doi:10.1093/conphys/coaf042 [paper, data]

Putative neural and endocrine control of thermal acclimation in fish.

Journal: Conservation physiology

Status: data only, 1 dataset cited

[16068] doi:10.1101/2025.06.16.657725 [paper, repository]

Image-Based Meta- and Mega-Analysis (IBMMA): A Unified Framework for Large-Scale, Multi-Site, Neuroimaging Data Analysis

Journal: bioRxiv (preprint)

Authors' code: sundelinustc/IBMMA (GPL-3.0)

Status: code verified, 12 files readable, 5 matches

[16069] doi:10.1101/2025.06.16.658246 [paper, data]

Developing a Sensory Representation of an Artificial Body Part

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[16070] doi:10.1162/imag.a.39 [paper, repository]

Characterising ongoing brain aging and baseline effects from cross-sectional data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 15542746 (CC-BY-4.0)

Status: code verified

[16071] doi:10.1162/imag.a.43 [paper, repository]

Investigating short windows of interbrain synchrony: A step toward fNIRS-based hyperfeedback.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: univiemops/hyperfeedback-feasibility (no license)

Status: code verified, 13 files readable, 11 matches

[16072] doi:10.1172/jci.insight.190682 [paper, repository]

Large-scale survey, animal models, and computational modeling identify histological neurodegenerative biomarkers for traumatic optic neuropathy.

Journal: JCI insight

Authors' code: xby-0823/Computational-modeling (no license)

Status: code verified, 2 files readable

[16073] doi:10.1172/jci183434 [paper, data]

CNS-targeted base editing of the major late-onset Tay-Sachs mutation alleviates disease in mice.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[16074] doi:10.1186/s12967-025-06680-3 [paper, data]

Integrating multi-omics to unveil PSMD12 as a critical gene in promoting brain metastases of lung adenocarcinoma.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[16075] doi:10.1371/journal.pcbi.1013097 [paper, data]

Cholinergic modulation of neural networks supports sequential and complementary roles for NREM and REM states in memory consolidation.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[16076] doi:10.1371/journal.pcbi.1013184 [paper, repository]

Parameterization of intraoperative human microelectrode recordings: Linking action potential morphology to brain anatomy.

Journal: PLoS computational biology

Authors' code: OSF qcgeh (no license)

Status: code verified

[16077] doi:10.3389/fnhum.2025.1567689 [paper, data]

Nature imagery's influence on ERN amplitude: an examination of Attention Restoration Theory using EEG.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[16078] doi:10.3389/fnins.2025.1580931 [paper, data]

UET175: EEG dataset of motor imagery tasks in Vietnamese stroke patients.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[16079] doi:10.7554/elife.105422 [paper, repository]

A contextual fear conditioning paradigm in head-fixed mice exploring virtual reality.

Journal: eLife

Authors' code: seethakris/CFCMethodspaper (no license)

Status: code verified, 13 files readable, 2 matches

Monday, 16 June 2025 (36 papers)

[16080] doi:10.1002/ana.27278 [paper, data]

Visual Features in Stereo-Electroencephalography to Predict Surgical Outcome: A Multicenter Study.

Journal: Annals of neurology

Status: data only, 1 dataset cited

[16081] doi:10.1002/ana.27288 [paper, repository]

Blood α-Synuclein Separates Parkinson's Disease from Dementia with Lewy Bodies.

Journal: Annals of neurology

Authors' code: gkannarkat/ChenPlotkin_SynucleinStrain (no license)

Status: code verified, 1 file readable, 5 matches

[16082] doi:10.1002/mrm.30607 [paper, repository]

Multidimensional RF pulse design using auto-differentiable spin-domain optimization and its application to reduced field-of-view imaging.

Journal: Magnetic resonance in medicine

Authors' code: MIITT-MRI-Jianglab/Multid_RF_SpinDomain (MIT)

Status: code verified, 19 files readable, 2 matches

[16083] doi:10.1007/s00429-025-02961-1 [paper, repository]

Integrating EEG and EMG data: a novel statistical pipeline for investigating brain-muscle interaction in experimental neuroarchaeology.

Journal: Brain structure & function

Authors' code: simonaaff/EEG-EMG-neuroarchaeology (no license)

Status: code verified, 2 files readable, 2 matches

[16084] doi:10.1007/s12311-025-01863-6 [paper, repository]

Cerebellar control over inter-regional excitatory/inhibitory dynamics discriminates execution from observation of an action.

Journal: Cerebellum (London, England)

Authors' code: RobertaMLo/CRBL_DCM (no license)

Status: code verified, 51 files readable, 3 matches

[16085] doi:10.1007/s42113-025-00251-x [paper]

Finding Closure: A Closer Look at the Gestalt Law of Closure in Convolutional Neural Networks.

Journal: Computational brain & behavior

Status: code on request

[16086] doi:10.1016/j.crmeth.2025.101080 [paper, repository]

A generalizable and targeted molecular biopsy approach for in situ cryogenic electron tomography of vitreous brain tissue.

Journal: Cell reports methods

Authors' code: rosalindfranklininstitute/vesicle_measurement (Apache-2.0), warpem/warp (GPL-3.0), CellArchLab/MemBrain (MPL-2.0)

Status: code verified, 310 files readable, 2 matches

[16087] doi:10.1016/j.dcn.2025.101585 [paper, repository]

Fetal functional connectivity: Examining the role of prenatal maternal depression symptoms using graph theory.

Journal: Developmental cognitive neuroscience

Authors' code: Zenodo 13905954 (CC-BY-4.0)

Status: code verified

[16088] doi:10.1016/j.ebiom.2025.105783 [paper, data]

Meal scheduling corrects obesogenic diet induced-uncoupling of cortico-hippocampal activities supporting memory.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[16089] doi:10.1016/j.isci.2025.112885 [paper, data]

Gpr37 modulates the severity of inflammation-induced GI dysmotility by regulating enteric reactive gliosis.

Journal: iScience

Status: code on request, 1 dataset cited

[16090] doi:10.1016/j.jare.2025.06.033 [paper, data]

Age-dependent elevation of Nr4a1 attenuates PI3K/AKT/GSK3β pathway and mediates tau hyperphosphorylation and cognitive impairments.

Journal: Journal of advanced research

Status: data only, 1 dataset cited

[16091] doi:10.1016/j.xcrp.2025.102660 [paper, data]

Excitation and polarization of isolated neurons by high-frequency sine waves for temporal interference stimulation.

Journal: Cell reports. Physical science

Status: data only, 9 datasets cited

[16092] doi:10.1038/s41565-025-01955-8 [paper, repository]

Nanoneedles enable spatiotemporal lipidomics of living tissues.

Journal: Nature nanotechnology

Authors' code: ChiappiniLab/Nanoneedle-Lipidomics (GPL-3.0), zaritskylab/Nanoneedle-Lipidomics (GPL-3.0)

Status: code verified, 30 files readable, 9 matches

[16093] doi:10.1038/s41698-025-00980-z [paper, repository]

Integration of MRI radiomics and germline genetics to predict the IDH mutation status of gliomas.

Journal: NPJ precision oncology

Authors' code: KachuriLab/multimodal-IDH-classification (no license), gevaertlab/BrainMR_AE_datafusion (no license)

Status: dead link

[16094] doi:10.1038/s44172-025-00437-y [paper, repository]

Super-Turing synaptic resistor circuits for intelligent morphing wing.

Journal: Communications engineering

Authors' code: deo-atharva/morphing-wing (no license)

Status: code verified, 4 files readable

[16095] doi:10.1080/17590914.2025.2513881 [paper, data]

Cortical Stimulation-Based Transcriptome Shifts on Parkinson's Disease Animal Model.

Journal: ASN neuro

Status: data only, 1 dataset cited

[16096] doi:10.1080/19336934.2025.2519687 [paper, data]

Electrical silencing of dendritic arborization neurons rescues toxic polyglutamine-induced locomotion defect.

Journal: Fly

Status: data only, 1 dataset cited

[16097] doi:10.1162/imag.a.29 [paper, data]

Domain general frontoparietal regions show modality-dependent coding of auditory and visual rules.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[16098] doi:10.1162/imag.a.34 [paper, data]

Functional ultrasound imaging and neuronal activity: How accurate is the spatiotemporal match?

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[16099] doi:10.1162/imag.a.36 [paper, repository]

Comparing the carbon footprint of fMRI data processing and analysis approaches.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: thomasyeolab/cbig (MIT), OSF cdq6y (no license), GreenScheduler/cats (MIT)

Status: code verified, 2,054 files readable

[16100] doi:10.1162/imag.a.40 [paper, repository]

How choice and motor mimicry affect affiliation: An fNIRS study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF f6xkp (no license)

Status: code verified, 5 files readable, 5 matches

[16101] doi:10.1186/s12967-025-06706-w [paper]

Single-cell and spatial transcriptome analyses reveal MAZ(+) NPC-like clusters as key role contributing to glioma recurrence and drug resistance.

Journal: Journal of translational medicine

Status: code on request

[16102] doi:10.1186/s13020-025-01135-9 [paper, data]

Dingzhen pills inhibit neuronal ferroptosis and neuroinflammation by inhibiting the cGAS-STING pathway for Parkinson's disease mice.

Journal: Chinese medicine

Status: data only, 1 dataset cited

[16103] doi:10.1371/journal.pbio.3003213 [paper, repository]

Precise spike-timing information in the brainstem is well aligned with the needs of communication and the perception of environmental sounds.

Journal: PLoS biology

Authors' code: Zenodo 15413178 (CC0-1.0), chris-sumner/cochlear-nucleus-am-coding (CC0-1.0)

Status: code verified, 134 files readable, 22 matches

[16104] doi:10.1371/journal.pone.0325483 [paper, repository]

RRFNet: A free-anchor brain tumor detection and classification network based on reparameterization technology.

Journal: PloS one

Authors' code: Mr-cream/RRFNet (no license)

Status: dead link

[16105] doi:10.1371/journal.pone.0326219 [paper, data]

Novel fungal metabolites as dual cholinesterase inhibitors: A computational approach for Alzheimer's disease therapy.

Journal: PloS one

Status: data only, 1 dataset cited

[16106] doi:10.1371/journal.ppat.1012733 [paper, data]

Toxoplasma gondii infection of neurons alters the production and content of extracellular vesicles directing astrocyte phenotype and contributing to the loss of GLT-1 in the infected brain.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

[16107] doi:10.14336/ad.2025.0387 [paper, data]

Lars2 Deficiency-Induced Mitochondrial Dysfunction Drives the Emergence of a Pro-Inflammatory Stroke-Specific Microglial Subpopulation.

Journal: Aging and disease

Status: data only, 1 dataset cited

[16108] doi:10.3389/fnins.2025.1598336 [paper, data]

A systematic review and functional <i>in-silico</i> analysis of genes and variants associated with amyotrophic lateral sclerosis.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[16109] doi:10.3390/cancers17122000 [paper, data]

Accelerated Radiotherapy for Complicated Bone Metastases: SHARON Bone Randomized Phase III Trial Shows Non-Inferiority Compared to Standard Palliative Fractionation (NCT03503682).

Journal: Cancers

Status: data only, 1 dataset cited

[16110] doi:10.3390/insects16060634 [paper, data]

Functional Differentiation Reconfiguration in the Midgut of <i>Nezara viridula</i> (Hemiptera: Pentatomidae) Based on Transcriptomics: Multilayer Enrichment Analysis and Topological Network Interpretation.

Journal: Insects

Status: data only, 1 dataset cited

[16111] doi:10.7554/elife.101391 [paper, data]

Microglia are required for developmental specification of AgRP innervation in the hypothalamus of offspring exposed to maternal high-fat diet during lactation.

Journal: eLife

Status: data only, 1 dataset cited

[16112] doi:10.7554/elife.92712 [paper, repository]

Predictive learning rules generate a cortical-like replay of probabilistic sensory experiences.

Journal: eLife

Authors' code: TAsabuki/PriorNet_codes (no license)

Status: code verified, 2 files readable

[16113] doi:10.7554/elife.96803 [paper, repository]

A common alteration in effort-based decision-making in apathy, anhedonia, and late circadian rhythm.

Journal: eLife

Authors' code: Zenodo 15068968 (CC-BY-4.0), smehrhof/2024_effort_study (MIT), smehrhof/effort-study (MIT)

Status: code verified, 167 files readable, 14 matches

[16114] doi:10.7554/elife.97036 [paper, repository]

Rate of brain aging associates with future executive function in Asian children and older adults.

Journal: eLife

Authors' code: hzlab/2024_Cheng_Longitudinal_Brain_Age (MIT)

Status: code verified, 64 files readable, 12 matches

[16115] doi:10.7717/peerj.19460 [paper, data]

White matter hyperintensities and the risk of vascular dementia: a systematic review and meta-analysis.

Journal: PeerJ

Status: data only, 1 dataset cited

Sunday, 15 June 2025 (4 papers)

[16116] doi:10.1080/19490976.2025.2517838 [paper, data]

Anxiety-like behavior during protracted morphine withdrawal is driven by gut microbial dysbiosis and attenuated with probiotic treatment.

Journal: Gut microbes

Status: data only, 7 datasets cited

[16117] doi:10.1101/2025.06.11.658893 [paper, repository]

Sleep strengthens successor representations of learned sequences

Journal: bioRxiv (preprint)

Authors' code: OSF utdgv (no license)

Status: code verified, 7 files readable

[16118] doi:10.3390/bioengineering12060656 [paper, data]

Anatomical Characteristics Predict Response to Transcranial Direct Current Stimulation (tDCS): Development of a Computational Pipeline for Optimizing tDCS Protocols.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[16119] doi:10.3390/cells14120905 [paper, data]

Epigenetic Reprogramming of Cell Identity in the Rat Primary Neuron-Glia Cultures Involves Histone Serotonylation.

Journal: Cells

Status: data only, 1 dataset cited

Saturday, 14 June 2025 (9 papers)

[16120] doi:10.1007/s11065-025-09668-4 [paper, data]

The Level and Nature of Impairment on the Iowa Gambling Task Following Acquired Brain Injury: A Meta-analysis.

Journal: Neuropsychology review

Status: data only, 1 dataset cited

[16121] doi:10.1016/j.celrep.2025.115850 [paper]

The mouse posterior insular cortex encodes expressive and receptive aspects of courtship vocalizations.

Journal: Cell reports

Status: code on request

[16122] doi:10.1016/j.celrep.2025.115864 [paper, repository]

Modulation of motor excitability reflects traveling waves of neural oscillations.

Journal: Cell reports

Authors' code: doi:10.5281/zenodo/15491927 (no license), Zenodo 15342519 (MIT), haigh066/traveling-wave-tms (MIT)

Status: code verified, 166 files readable, 5 matches

[16123] doi:10.1016/j.xpro.2025.103898 [paper, repository]

Protocol for closed-loop optogenetic manipulation of cortical activity following hippocampal sharp-wave ripples in freely behaving rats.

Journal: STAR protocols

Authors' code: OSF 3n9p8 (no license), falcon-core.readthedocs.io (no license), kloostermannerflab/falcon-fklab-extensions (GPL-3.0)

Status: code verified, 53 files readable

[16124] doi:10.1016/j.ymthe.2025.06.026 [paper]

A single dose of a vectorized mAb targeting TDP-43 potently inhibits the neuropathology in a model of ALS/FTD.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: code on request

[16125] doi:10.1038/s41531-025-01036-6 [paper, repository]

Perivascular space fluid diffusivity predicts clinical deterioration in prodromal and early-stage Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: markvcid.partners.org/markvcid1-protocols-resources (no license)

Status: code verified

[16126] doi:10.1038/s41597-025-05299-9 [paper, repository]

Mirror Neurons in Monkey Frontal and Parietal Areas.

Journal: Scientific data

Authors' code: OSF 8t3ce (no license)

Status: code verified, 5 files readable

[16127] doi:10.1093/braincomms/fcaf238 [paper, repository]

Corticomuscular coherence during upright standing in unilateral transfemoral amputees.

Journal: Brain communications

Authors' code: Zenodo 15534028 (CC-BY-4.0)

Status: code verified, 9 files readable, 9 matches

[16128] doi:10.1152/jn.00281.2024 [paper, repository]

Internal models in active self-motion estimation: role of inertial sensory cues.

Journal: Journal of neurophysiology

Authors' code: data.ru.nl/login/reviewer-2801061450 (no license)

Status: code verified

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