Every paper, by date: page 78

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 78 of 200: 12 May 2025 to 5 May 2025.

Monday, 12 May 2025 (39 papers, 36 on this page)

[17249] doi:10.1016/j.isci.2025.112630 [paper, data]

Endothelial cell Nrf2 controls neuroinflammation following a systemic insult.

Journal: iScience

Status: code on request, 1 dataset cited

[17250] doi:10.1016/j.isci.2025.112642 [paper]

Empathy aligns brains in synchrony.

Journal: iScience

Status: code on request

[17251] doi:10.1016/j.isci.2025.112645 [paper, repository]

Preparing to act follows Bayesian inference rules.

Journal: iScience

Authors' code: OSF z7q6x (no license)

Status: code verified, 1 file readable

[17252] doi:10.1016/j.jgeb.2025.100503 [paper, data]

Transcriptome Derived Artificial neural networks predict PRRC2A as a potent biomarker for epilepsy.

Journal: Journal, genetic engineering & biotechnology

Status: data only, 1 dataset cited

[17253] doi:10.1038/s41467-025-59206-2 [paper, repository]

High-resolution spatial transcriptomics and cell lineage analysis reveal spatiotemporal cell fate determination during craniofacial development.

Journal: Nature communications

Authors' code: ChaiLabUSC/code (no license), Zenodo 15085996 (CC-BY-4.0)

Status: code verified, 9 files readable, 6 matches

[17254] doi:10.1038/s41467-025-59487-7 [paper, repository]

Spatial mapping of the brain metabolome lipidome and glycome.

Journal: Nature communications

Authors' code: XinBiostats/SAMI (CC-BY-NC-SA-4.0), Zenodo 15224641 (CC-BY-4.0), Zenodo 15493168 (CC-BY-NC-4.0), Zenodo 15493169 (CC-BY-NC-4.0)

Status: code verified, 13 files readable, 6 matches

[17255] doi:10.1038/s41467-025-59668-4 [paper, repository]

Hierarchical competing inhibition circuits govern motor stability in C. elegans.

Journal: Nature communications

Authors' code: Zenodo 15255676 (CC-BY-4.0)

Status: code verified, 1 file readable

[17256] doi:10.1038/s41531-025-00944-x [paper]

Cortical microstructural abnormalities in dementia with Lewy bodies and their associations with Alzheimer's disease copathologies.

Journal: NPJ Parkinson's disease

Status: code on request

[17257] doi:10.1038/s41531-025-00982-5 [paper, repository]

Baseline [<sup>18</sup>F]FP-CIT PET-based deep learning prediction of levodopa-induced dyskinesia in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: shap/shap (MIT), mi2rl/LIDprediction (MIT)

Status: code verified, 108 files readable, 7 matches

[17258] doi:10.1038/s41539-025-00316-3 [paper, repository]

Understanding the role of eye movement pattern and consistency during face recognition through EEG decoding.

Journal: NPJ science of learning

Authors' code: OSF byx8r (no license), guoyang.work/emeegstudy.html (no license), visal.cs.cityu.edu.hk/research/emhmm (no license)

Status: code verified, 14 files readable, 4 matches

[17259] doi:10.1038/s41562-025-02156-y [paper, repository]

Biological markers and psychosocial factors predict chronic pain conditions.

Journal: Nature human behaviour

Authors' code: EVPlab (no license), cocoanlab.github.io/tops (no license)

Status: code verified

[17260] doi:10.1038/s41588-025-02188-0 [paper, repository]

Three-dimensional genome landscape of primary human cancers.

Journal: Nature genetics

Authors' code: AmpliconSuite/AmpliconSuite-pipeline (BSD-2-Clause), NCICCGPO/HiChIP-Manuscript (MIT), Zenodo 15103075 (MIT), katieyost/hichip-manuscript (MIT)

Status: code verified, 125 files readable, 21 matches

[17261] doi:10.1038/s41592-025-02698-z [paper, repository]

Physics-driven self-supervised learning for fast high-resolution robust 3D reconstruction of light-field microscopy.

Journal: Nature methods

Authors' code: kimchange/SeReNet (no license), Zenodo 14909862 (CC-BY-4.0)

Status: code verified, 79 files readable, 5 matches

[17262] doi:10.1038/s41598-025-00116-0 [paper, repository]

Application of improved graph convolutional network for cortical surface parcellation.

Journal: Scientific reports

Authors' code: tanjia123456/ADGCN (no license)

Status: empty repository, 1 file readable

[17263] doi:10.1038/s41598-025-00272-3 [paper, repository]

Integrating Bayesian and neural networks models for eye movement prediction in hybrid search.

Journal: Scientific reports

Authors' code: NeuroLIAA/visions (MIT), NeuroLIAA/ruarte-hs-2024 (MIT)

Status: code verified, 153 files readable, 15 matches

[17264] doi:10.1038/s41598-025-00886-7 [paper, repository]

Multiscale gradients of corticopontine structural connectivity.

Journal: Scientific reports

Authors' code: neuralabc (no license)

Status: code verified

[17265] doi:10.1038/s41598-025-01465-6 [paper, repository]

White matter volume and microstructural integrity are associated with fatigue in relapsing multiple sclerosis.

Journal: Scientific reports

Authors' code: neurocics/Figueroa-Vargas_Navarrete_2025_Scientific_Reports (GPL-3.0)

Status: code verified, 8 files readable, 1 match

[17266] doi:10.1038/s41598-025-99019-3 [paper, repository]

Reward monitoring in the frontopolar cortex of macaques.

Journal: Scientific reports

Authors' code: gin.g-node.org/lorenzo_ferrucci/fp_oip3r (CC0-1.0)

Status: code verified, 2 files readable

[17267] doi:10.1038/s42003-025-08074-z [paper, repository]

Susceptibility to multitasking in stroke is associated to multiple-demand system damage and leads to lateralized visuospatial deficits.

Journal: Communications biology

Authors' code: CCNL-UniPD/Multitasking (no license)

Status: code verified, 3 files readable

[17268] doi:10.1073/pnas.2502656122 [paper, repository]

Individuals with substance use disorders experience an increased urge to move to complex music.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: researchbox.org/3908 (no license)

Status: code verified

[17269] doi:10.1073/pnas.2505454122 [paper, repository]

Cardiac signals inform auditory regularity processing in the absence of consciousness.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: DNC-EEG-platform/CardioAudio_Coma (GPL-3.0)

Status: code verified, 10 files readable, 2 matches

[17270] doi:10.1162/imag_a_00576 [paper, repository]

Interplay between MRI-based axon diameter and myelination estimates in macaque and human brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Tinggong/Microstructure.jl (MIT), jondeuce/DECAES.jl (MIT)

Status: code verified, 70 files readable, 6 matches

[17271] doi:10.1162/imag_a_00577 [paper, repository]

Cortical network modulations associated with prolonged training of the multiple object-tracking task.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF v67ya (no license)

Status: code verified, 13 files readable

[17272] doi:10.1186/s40478-025-02001-3 [paper, repository]

Genomic and immune profiling of breast cancer brain metastases.

Journal: Acta neuropathologica communications

Authors' code: davidsjoberg/ggsankey (other), gitlab.oit.duke.edu/dcibioinformatics/pubs/anders-van-swearingen-bcbrm (AGPL-3.0)

Status: code verified, 84 files readable, 35 matches

[17273] doi:10.1186/s40478-025-02015-x [paper, data]

Astrocytes carrying LRRK2 G2019S exhibit increased levels of clusterin chaperone via miR-22-5p and reduced ability to take up α-synuclein fibrils.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[17274] doi:10.1186/s42466-025-00390-3 [paper, repository]

Neuropsychiatric changes following striatal stroke- results from the observational PostPsyDis study.

Journal: Neurological research and practice

Authors' code: netstim/leaddbs (GPL-3.0)

Status: code verified, 2,000 files readable

[17275] doi:10.1371/journal.pcbi.1012572 [paper, repository]

Capturing the emergent dynamical structure in biophysical neural models.

Journal: PLoS computational biology

Authors' code: bmilinkovic/TVBEmergence (no license)

Status: code verified, 103 files readable, 9 matches

[17276] doi:10.1371/journal.pone.0321088 [paper, repository]

Towards clinical applicability of fMRI via systematic filtering.

Journal: PloS one

Authors' code: hinata2305/CleanBrain (no license)

Status: code verified, 29 files readable, 13 matches

[17277] doi:10.1371/journal.pone.0322983 [paper, repository]

Exploring dynamical whole-brain models in high-dimensional parameter spaces.

Journal: PloS one

Authors' code: jugit.fz-juelich.de/inm7/public (no license), inm7/vbc_dwmri (MIT), kyesam-jung/model-based-prediction (MIT)

Status: code verified, 21 files readable, 3 matches

[17278] doi:10.3389/fnins.2025.1582080 [paper, repository]

Exploring the suitability of piecewise-linear dynamical system models for cognitive neural dynamics.

Journal: Frontiers in neuroscience

Authors' code: peractionlab/Decision_rSLDS (no license)

Status: code verified, 59 files readable, 3 matches

[17279] doi:10.3390/biomedicines13051177 [paper, data]

Transposable Element Is Predictive of Chemotherapy- and Immunotherapy-Related Overall Survival in Glioma.

Journal: Biomedicines

Status: data only, 1 dataset cited

[17280] doi:10.7554/elife.100840 [paper, repository]

Reproducibility of in vivo electrophysiological measurements in mice.

Journal: eLife

Authors' code: int-brain-lab/paper-reproducible-ephys (MIT), figshare 19705522 (CC-BY-4.0), figshare 19694452 (CC-BY-4.0), SWC-Advanced-Microscopy/BakingTray (LGPL-3.0), SainsburyWellcomeCentre/lasagna (GPL-3.0), SWC-Advanced-Microscopy/StitchIt (LGPL-3.0), cortex-lab/alyx (no license), stevenjwest/brainregister (GPL-3.0)

Status: code verified, 1,099 files readable, 40 matches

[17281] doi:10.7554/elife.101035 [paper, repository]

Molecular and spatial transcriptomic classification of midbrain dopamine neurons and their alterations in a LRRK2<sup>G2019S</sup> model of Parkinson's disease.

Journal: eLife

Authors' code: AwatramaniLab/Gaertner_Oram_etal (MIT)

Status: code verified, 14 files readable, 13 matches

[17282] doi:10.7554/elife.103235 [paper, data]

Selective attention and sensitivity to auditory disturbances in a virtually real classroom.

Journal: eLife

Status: data only, 1 dataset cited

[17283] doi:10.7554/elife.95379 [paper, data]

<i>Drosophila</i> epidermal cells are intrinsically mechanosensitive and modulate nociceptive behavioral outputs.

Journal: eLife

Status: data only, 1 dataset cited

[17284] doi:10.7717/peerj-cs.2811 [paper, repository]

EEG-based schizophrenia diagnosis using deep learning with multi-scale and adaptive feature selection.

Journal: PeerJ. Computer science

Authors' code: supp:PMC12190612/peerj-cs-11-2811-s001.py (no license)

Status: code verified, 1 file readable

Sunday, 11 May 2025 (9 papers)

[17285] doi:10.1002/advs.202500400 [paper, data]

Mechanical Forces Guide Axon Growth through the Nigrostriatal Pathway in an Organotypic Model.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 3 datasets cited

[17286] doi:10.1016/j.isci.2025.112633 [paper]

Transcranial near infrared therapy reprograms metabolism to rescue sleep and place cell functionality.

Journal: iScience

Status: code on request

[17287] doi:10.1038/s41467-025-59756-5 [paper, repository]

Naturalistic acute pain states decoded from neural and facial dynamics.

Journal: Nature communications

Authors' code: YuhaoHuangMD/NaturalisticPain (no license), JayRGopal/FaceEmotionDetection (other)

Status: code verified, 15 files readable, 8 matches

[17288] doi:10.1038/s41598-025-00986-4 [paper, data]

A transcriptomic and proteomic analysis and comparison of human brain tissue from patients with and without epilepsy.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17289] doi:10.1101/2025.05.09.653064 [paper, repository]

Lifestyle, Early-life, and Genetic Health Risk Factors Underlying the Brain Age Gap: A Mega-Analysis Across 3,934 Individuals from the ENIGMA MDD Consortium

Journal: bioRxiv (preprint)

Authors' code: personal.broadinstitute.org/sripke/share_links (no license), xshen796/enigma_mdd_prs (MIT)

Status: code verified, 17 files readable, 2 matches

[17290] doi:10.1113/jp287496 [paper, repository]

The contribution of age and sex hormones to female neuromuscular function across the adult lifespan.

Journal: The Journal of physiology

Authors' code: DaniHiam/NeuroMusc_FAME (no license)

Status: code verified, 2 files readable, 2 matches

[17291] doi:10.1113/jp288019 [paper, data]

MicroRNA-138-5p suppresses excitatory synaptic strength at the cerebellar input layer.

Journal: The Journal of physiology

Status: data only, 1 dataset cited

[17292] doi:10.3390/healthcare13101114 [paper, data]

Integrative Machine Learning Framework for Enhanced Subgroup Classification in Medulloblastoma.

Journal: Healthcare (Basel, Switzerland)

Status: data only, 1 dataset cited

[17293] doi:10.3390/jimaging11050152 [paper, repository]

Frequency-Aware Diffusion Model for Multi-Modal MRI Image Synthesis.

Journal: Journal of imaging

Authors' code: Rain-Alley/FADM (no license)

Status: empty repository, 1 file readable

Saturday, 10 May 2025 (16 papers)

[17294] doi:10.1016/j.jneumeth.2025.110467 [paper, data]

Aseptic, semi-sealed cranial chamber implants for chronic multi-channel neurochemical and electrophysiological neural recording in nonhuman primates.

Journal: Journal of neuroscience methods

Status: data only, 1 dataset cited

[17295] doi:10.1016/j.nicl.2025.103799 [paper, repository]

Brain activity dynamics after traumatic brain injury indicate increased state transition energy and preference of lower order states.

Journal: NeuroImage. Clinical

Authors' code: ejcorn/brain_states (MIT)

Status: code verified, 230 files readable, 4 matches

[17296] doi:10.1016/j.nicl.2025.103800 [paper, data]

Assessment of changes in synaptic density in the zQ175DN mouse model of Huntington's disease: a [<sup>18</sup>F]SynVesT-1 study.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[17297] doi:10.1038/s41467-025-59548-x [paper, data]

Mapping the interaction surface between Ca<sub>V</sub>β and actin and its role in calcium channel clearance.

Journal: Nature communications

Status: data only, 6 datasets cited

[17298] doi:10.1038/s41467-025-59617-1 [paper, data]

A minimally invasive thrombotic model to study stroke in awake mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[17299] doi:10.1038/s41531-025-00966-5 [paper, repository]

An approach to characterize mechanisms of action of anti-amyloidogenic compounds in vitro and in situ.

Journal: NPJ Parkinson's disease

Authors' code: jpquast/protti (other)

Status: code verified, 99 files readable, 10 matches

[17300] doi:10.1038/s41597-025-05026-4 [paper, data]

Mesoscale insights in Epileptic Networks: A Multimodal Intracranial Dataset.

Journal: Scientific data

Status: data only, 1 dataset cited

[17301] doi:10.1038/s41598-025-00679-y [paper, data]

Childhood abuse and neglect are differentially related to perceived discrimination and structural change in empathy-related circuitry.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17302] doi:10.1038/s41598-025-00763-3 [paper, data]

Medulloblastoma's master regulators and their association with patients' risk.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17303] doi:10.1038/s41598-025-98673-x [paper, repository]

Salience network resting-state functional connectivity predicts self-controlled decision-making.

Journal: Scientific reports

Authors' code: OSF d2h7y (no license)

Status: code verified, 3 files readable

[17304] doi:10.1038/s42003-025-08103-x [paper, data]

Molecular basis of TRPV3 channel blockade by intracellular polyamines.

Journal: Communications biology

Status: data only, 1 dataset cited

[17305] doi:10.1038/s42003-025-08152-2 [paper, data]

Tracing mitochondrial marks of neuronal aging in iPSCs-derived neurons and directly converted neurons.

Journal: Communications biology

Status: data only, 1 dataset cited

[17306] doi:10.1186/s40478-025-02016-w [paper, repository]

Partial normalization of hippocampal oscillatory activity during sleep in TgF344-AD rats coincides with increased cholinergic synapses at early-plaque stage of Alzheimer's disease.

Journal: Acta neuropathologica communications

Authors' code: DeVosLab/SynapseDetection (CC-BY-NC-SA-4.0), Zenodo 14644361 (CC-BY-4.0), Zenodo 17357100 (CC-BY-4.0)

Status: code verified, 6 files readable

[17307] doi:10.3390/biom15050694 [paper, data]

Nav1.8 and Chronic Pain: From Laboratory Animals to Clinical Patients.

Journal: Biomolecules

Status: data only, 1 dataset cited

[17308] doi:10.3390/s25103007 [paper, repository]

Long-Term Neonatal EEG Modeling with DSP and ML for Grading Hypoxic-Ischemic Encephalopathy Injury.

Journal: Sensors (Basel, Switzerland)

Authors' code: leahtwomey/Long_term_EEG_Grading_Using_DSP_ML (MIT), leahtwomey/Long_term_EEG_Grading_DSP_ML (no license)

Status: code verified, 3 files readable, 2 matches

[17309] doi:10.3390/s25103022 [paper, repository]

Detection and Recognition of Visual Geons Based on Specific Object-of-Interest Imaging Technology.

Journal: Sensors (Basel, Switzerland)

Authors' code: haiiro-l/Detection-and-Recognition-of-Visual-Geons-Based-on-Specific-Object-of-Interest-Imaging-Technology (no license)

Status: empty repository, 1 file readable

Friday, 9 May 2025 (48 papers)

[17310] doi:10.1002/psp4.70033 [paper, repository]

Virtual Clinical Trial Reveals Significant Clinical Potential of Targeting Tumor-Associated Macrophages and Microglia to Treat Glioblastoma.

Journal: CPT: pharmacometrics & systems pharmacology

Authors' code: Craig-Lab/TargetingTAMsGlioblastoma (no license)

Status: code verified, 16 files readable, 17 matches

[17311] doi:10.1016/j.celrep.2025.115629 [paper, repository]

Wolbachia-mediated reduction in the glutamate receptor mGluR promotes female promiscuity and bacterial spread.

Journal: Cell reports

Authors' code: Zenodo 14058437 (CC-BY-4.0)

Status: code verified, 1 file readable

[17312] doi:10.1016/j.celrep.2025.115677 [paper, repository]

A left-lateralized dorsolateral prefrontal network for naming.

Journal: Cell reports

Authors' code: flinkerlab (no license)

Status: code verified

[17313] doi:10.1016/j.celrep.2025.115680 [paper, repository]

Temporally discordant chromatin accessibility and DNA demethylation define short- and long-term enhancer regulation during cell fate specification.

Journal: Cell reports

Authors' code: Zenodo 15061529 (CC-BY-4.0), Zenodo 5062153 (other-open), smithlabcode/walt (GPL-3.0), alexdobin/STAR (MIT), hodgesgenomicslab/npcdiff_atacme (no license), hodgesgenomicslab/natprotocols_atacme (no license)

Status: code verified, 424 files readable, 6 matches

[17314] doi:10.1016/j.celrep.2025.115685 [paper, repository]

Convergent effects of different anesthetics on changes in phase alignment of cortical oscillations.

Journal: Cell reports

Authors' code: Zenodo 8346151 (CC-BY-4.0)

Status: code verified, 54 files readable, 4 matches

[17315] doi:10.1016/j.devcel.2025.04.010 [paper]

Differential tissue deformability underlies fluid pressure-driven shape divergence of the avian embryonic brain and spinal cord.

Journal: Developmental cell

Status: code on request

[17316] doi:10.1016/j.jbc.2025.110223 [paper, data]

A novel compound DBZ alleviates chronic inflammatory pain and anxiety-like behaviors by targeting the JAK2-STAT3 signaling pathway.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[17317] doi:10.1016/j.jpha.2025.101337 [paper, repository]

Optimizing blood-brain barrier permeability in KRAS inhibitors: A structure-constrained molecular generation approach.

Journal: Journal of pharmaceutical analysis

Authors' code: myzhengSIMM/BBBP-KRAS (no license)

Status: code verified, 54 files readable, 21 matches

[17318] doi:10.1016/j.nbas.2025.100140 [paper, data]

Complex span measures of working memory do not mediate the effects of age on the P3 and N400 ERPs.

Journal: Aging brain

Status: data only, 1 dataset cited

[17319] doi:10.1016/j.xcrm.2025.102119 [paper, repository]

Multitrait GWAS of non-suicidal self-injury and the polygenetic effects on child psychopathology and brain structures.

Journal: Cell reports. Medicine

Authors' code: weizhouUMICH/SAIGE (LGPL-3.0), bulik/ldsc (GPL-3.0), omeed-maghzian/mtag (GPL-3.0), Iuliana-Ionita-Laza/CARMA (GPL-3.0), omerwe/polyfun (MIT)

Status: code verified, 2,121 files readable, 2 matches

[17320] doi:10.1016/j.xcrm.2025.102128 [paper]

Marine n-3 polyunsaturated fatty acids slow sleep impairment progression by regulating central circadian rhythms in type 2 diabetes.

Journal: Cell reports. Medicine

Status: code on request

[17321] doi:10.1016/j.xjmad.2025.100126 [paper, repository]

Individualized functional brain mapping machine learning prediction of symptom-change resulting from selective kappa-opioid antagonism in an anhedonic sample from a Fast-Fail trial.

Journal: Journal of mood and anxiety disorders

Authors' code: MeilingAva/Homologous-Functional-Regions (no license)

Status: code verified, 12 files readable, 4 matches

[17322] doi:10.1016/j.ymthe.2025.05.010 [paper]

RNAi-mediated silencing of SOD1 profoundly extends survival and functional outcomes in ALS mice.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: code on request

[17323] doi:10.1016/j.ymthe.2025.05.011 [paper, data]

Neuron-targeted gene therapy rescues multiple phenotypes of STXBP1-related disorders in mice and is well tolerated in nonhuman primates.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: data only, 1 dataset cited

[17324] doi:10.1038/s41386-025-02123-1 [paper]

Identifying brain-penetrant small-molecule modulators of human microglia using a cellular model of synaptic pruning.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only

[17325] doi:10.1038/s41419-025-07662-5 [paper]

Short-chain polyphosphates induce tau fibrillation and neurotoxicity in human iPSC-derived retinal neurons.

Journal: Cell death & disease

Status: code on request

[17326] doi:10.1038/s41467-025-59355-4 [paper, repository]

Insight predicts subsequent memory via cortical representational change and hippocampal activity.

Journal: Nature communications

Authors' code: MaxiBecker/Insight_Memory_Effect (MIT), Zenodo 14743957 (MIT), Zenodo 14743958 (MIT)

Status: code verified, 15 files readable, 12 matches

[17327] doi:10.1038/s41467-025-59503-w [paper, repository]

KAT5 regulates neurodevelopmental states associated with G0-like populations in glioblastoma.

Journal: Nature communications

Authors' code: sonali (no license), plaisier-lab/KAT5paper (no license)

Status: code verified

[17328] doi:10.1038/s41467-025-59589-2 [paper]

Flexible self-rectifying synapse array for energy-efficient edge multiplication in electrocardiogram diagnosis.

Journal: Nature communications

Status: code on request

[17329] doi:10.1038/s41467-025-59601-9 [paper, data]

Ectoparasites enhance survival by suppressing host exploration and limiting dispersal.

Journal: Nature communications

Status: data only, 2 datasets cited

[17330] doi:10.1038/s41514-025-00219-y [paper]

Wearable sleep recording augmented by artificial intelligence for Alzheimer's disease screening.

Journal: npj aging

Status: code on request

[17331] doi:10.1038/s41539-025-00312-7 [paper, repository]

Anterograde interference in multitask perceptual learning.

Journal: NPJ science of learning

Authors' code: OSF t6jxb (no license)

Status: code verified, 43 files readable

[17332] doi:10.1038/s41540-025-00527-9 [paper, repository]

A Python toolbox for neural circuit parameter inference.

Journal: NPJ systems biology and applications

Authors' code: necolab-ugr/ncpi (GPL-3.0)

Status: code verified, 141 files readable, 22 matches

[17333] doi:10.1038/s41598-025-99984-9 [paper, data]

Tumor-associated long non-coding RNAs show variable expression across diffuse gliomas and effect on cell growth upon silencing in glioblastoma.

Journal: Scientific reports

Status: data only, 2 datasets cited

[17334] doi:10.1038/s44318-025-00454-9 [paper]

Annexin A5 controls VDAC1-dependent mitochondrial Ca<sup>2+</sup> homeostasis and determines cellular susceptibility to apoptosis.

Journal: The EMBO journal

Status: data only

[17335] doi:10.1038/s44400-025-00006-2 [paper, data]

Investigating causal networks of dementia using causal discovery and natural language processing models.

Journal: NPJ dementia

Status: data only, 3 datasets cited

[17336] doi:10.1093/braincomms/fcaf179 [paper, repository]

Multimodal deep learning model for prediction of prognosis in central nervous system inflammation.

Journal: Brain communications

Authors' code: DigitalHealthcareLab/24CNSInfectionMRI (no license)

Status: code verified, 93 files readable, 7 matches

[17337] doi:10.1097/psy.0000000000001399 [paper, repository]

Circulating Antioxidant Nutrients and Brain Age in Midlife Adults.

Journal: Biopsychosocial science and medicine

Authors' code: james-cole/brainageR (LGPL-3.0), OSF g79by (no license)

Status: code verified, 9 files readable

[17338] doi:10.1101/2025.05.04.652136 [paper, repository]

A hierarchical adaptive optics strategy for three-photon imaging during behavior

Journal: bioRxiv (preprint)

Authors' code: aomicroscopy.org/dm-calib (no license), dop-oxford/dmlib (GPL-3.0), Zenodo 3714951 (CC-BY-4.0)

Status: code verified, 19 files readable, 2 matches

[17339] doi:10.1162/imag_a_00571 [paper, data]

The human olfactory amygdala: Anatomical connections between the olfactory bulb and amygdala subregions.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 3 datasets cited

[17340] doi:10.1162/imag_a_00573 [paper]

Impact of vascular architecture, oxygen saturation, and hematocrit on human cortical depth-dependent GE- and SE-BOLD fMRI signals: A simulation approach using realistic 3D vascular networks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[17341] doi:10.1162/imag_a_00575 [paper, repository]

The Voxelwise Encoding Model framework: A tutorial introduction to fitting encoding models to fMRI data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: HuthLab/speechmodeltutorial (no license), gallantlab/voxelwise_tutorials (BSD-3-Clause)

Status: code verified, 51 files readable, 10 matches

[17342] doi:10.1186/s12864-025-11676-w [paper, repository]

A cross-tissue transcriptomic approach decodes glucocorticoid receptor-dependent links to human metabolic phenotypes.

Journal: BMC genomics

Authors' code: ippas/ifpan-michkor-gr (no license)

Status: code verified, 35 files readable, 1 match

[17343] doi:10.1186/s12915-025-02230-x [paper, repository]

A single-cell transcriptomic atlas of all cell types in the brain of 5xFAD Alzheimer mice in response to dietary inulin supplementation.

Journal: BMC biology

Authors' code: XiaoyanWang11/snRNA-seq-of-inulin_-Diet_FAD (MIT)

Status: code verified, 12 files readable, 10 matches

[17344] doi:10.1186/s13059-025-03600-y [paper, repository]

Parent-of-origin regulation by maternal auts2 shapes neurodevelopment and behavior in fish.

Journal: Genome biology

Authors' code: cmerdrignac/auts2a (no license), figshare 1 (no license), Zenodo 15260183 (CC-BY-4.0), Zenodo 15260131 (GPL-3.0)

Status: code verified, 4 files readable, 3 matches

[17345] doi:10.1192/bjo.2025.28 [paper, repository]

Individual-level brain phenotypes in first-episode mania: normative modelling of brain morphometry and brainAGE.

Journal: BJPsych open

Authors' code: centilebrain.org (no license), SebastianPopescu/U-NET-for-LocalBrainAge-prediction (LGPL-3.0)

Status: code verified, 21 files readable

[17346] doi:10.1371/journal.pcbi.1012285 [paper, repository]

Parallel synapses with transmission nonlinearities enhance neuronal classification capacity.

Journal: PLoS computational biology

Authors' code: london-and-tequila/parallel_synapse_capacity (no license), london-and-tequila/parallel_synapse_MNIST (no license)

Status: code verified, 23 files readable, 5 matches

[17347] doi:10.1371/journal.pone.0322624 [paper, data]

Brain tumor classification using MRI images and deep learning techniques.

Journal: PloS one

Status: data only, 3 datasets cited

[17348] doi:10.14336/ad.2025.0409 [paper, repository]

Layer-Specific Colocalization of Microglia with Amyloid Plaques in the Middle Temporal Gyrus Predicts Cognitive Decline in Alzheimer's Disease.

Journal: Aging and disease

Authors' code: alleninstitute/sea-ad_2024 (other)

Status: code verified, 103 files readable, 4 matches

[17349] doi:10.21203/rs.3.rs-6566247/v1 [paper, repository]

Prenatal sodium channel dysfunction in Dravet syndrome alters cortical development

Journal: Research Square (preprint)

Authors' code: bejamz/assembloid_LFP_Zourrayetal2025 (CC0-1.0)

Status: code verified, 23 files readable, 2 matches

[17350] doi:10.25259/sni_303_2025 [paper, repository]

Development of an artificial intelligence-based convolutional neural network for sellar barrier classification using magnetic resonance imaging.

Journal: Surgical neurology international

Authors' code: colab.research.google.com/drive/1aynb1wuov6igazlvhj4mxcrpcrszrqba (no license)

Status: code verified

[17351] doi:10.3389/fneur.2025.1555215 [paper, data]

Migraine triggers, phases, and classification using machine learning models.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[17352] doi:10.3389/fnins.2025.1534924 [paper, repository]

Verifying the concordance between motion corrected and conventional MPRAGE for pediatric morphometric analysis.

Journal: Frontiers in neuroscience

Authors' code: mriphysics/DISORDER (MIT), jdtournier/mrdegibbs3D (no license)

Status: code verified, 180 files readable, 2 matches

[17353] doi:10.3389/fradi.2025.1509377 [paper, repository]

Diagnostic precision of a deep learning algorithm for the classification of non-contrast brain CT reports.

Journal: Frontiers in radiology

Authors' code: mlops-reports/reports (no license), mlops-reports/reports-dbt (no license)

Status: code verified, 30 files readable, 3 matches

[17354] doi:10.3390/ijms26104507 [paper, repository]

Peroxisome Proliferator-Activated Receptors (PPARs) May Mediate the Neuroactive Effects of Probiotic Metabolites: An In Silico Approach.

Journal: International journal of molecular sciences

Authors' code: pubchem.ncbi.nlm.nih.gov/idexchange/idexchange.cgi (no license), swisstargetprediction.ch (no license), reactome.org (no license), string-db.org (no license)

Status: code verified

[17355] doi:10.3390/s25102985 [paper, data]

DiffBTS: A Lightweight Diffusion Model for 3D Multimodal Brain Tumor Segmentation.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[17356] doi:10.3390/s25102987 [paper, data]

Time-Frequency Analysis of Motor Imagery During Plantar and Dorsal Flexion Movements Using a Low-Cost Ankle Exoskeleton.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[17357] doi:10.7717/peerj.19393 [paper, repository]

Deep learning-based fine-grained assessment of aneurysm wall characteristics using 4D-CT angiography.

Journal: PeerJ

Authors' code: Kumrai-T/DA_4DCTA (no license), supp:PMC12068254/peerj-13-19393-s001.zip (no license)

Status: code verified, 26 files readable, 1 match

Thursday, 8 May 2025 (29 papers)

[17358] doi:10.1002/advs.202503579 [paper, data]

Neuronal FGF13 Inhibits Mitochondria-Derived Damage Signals to Prevent Neuroinflammation and Neurodegeneration in a Mouse Model of Parkinson's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[17359] doi:10.1016/j.biopsych.2025.04.025 [paper, repository]

Parsing Clinical and Neurobiological Sources of Heterogeneity in Depression.

Journal: Biological psychiatry

Authors' code: PersonomicsLab/Heterogeneity (no license)

Status: code verified, 26 files readable, 9 matches

[17360] doi:10.1016/j.bpsgos.2025.100530 [paper, data]

Deconvolution-Based Transcriptomic Analysis in the Hippocampus Reveals Cell Type-Specific Risk Genes and Pathways Associated With Depression and Suicide.

Journal: Biological psychiatry global open science

Status: data only, 1 dataset cited

[17361] doi:10.1016/j.cub.2025.04.047 [paper, repository]

Expression of clock genes tracks daily and tidal time in brains of intertidal crustaceans Eurydice pulchra and Parhyale hawaiensis.

Journal: Current biology : CB

Authors' code: HastingsLab-LMB/fish_pipeline (no license), figshare 240869 (CC-BY-4.0)

Status: code verified, 13 files readable

[17362] doi:10.1016/j.dib.2025.111639 [paper, data]

EEG dataset for natural image recognition through visual stimuli.

Journal: Data in brief

Status: data only, 3 datasets cited

[17363] doi:10.1016/j.isci.2025.112606 [paper, data]

Different populations of mouse egg cortical vesicles are responsible for post-fertilization zinc sparks and proteolysis of the zona pellucida.

Journal: iScience

Status: code on request, 1 dataset cited

[17364] doi:10.1016/j.isci.2025.112607 [paper]

Altered brain activity during active forgetting in highly superior autobiographical memory: Evidence from an item-method directed forgetting.

Journal: iScience

Status: code on request

[17365] doi:10.1016/j.nbd.2025.106937 [paper]

Rodent and human seizures demonstrate a dynamic interplay with spreading depolarizations.

Journal: Neurobiology of disease

Status: code on request

[17366] doi:10.1016/j.xhgg.2025.100450 [paper, data]

Pathogenic PPP2R5D variants disrupt neuronal development and neurite outgrowth in patient-derived neurons that are reversed by allele-specific knockdown.

Journal: HGG advances

Status: data only, 1 dataset cited

[17367] doi:10.1038/s41526-025-00468-x [paper]

Brain and cerebrospinal fluid 3D center of mass shift after spaceflight.

Journal: NPJ microgravity

Status: code on request

[17368] doi:10.1038/s41531-025-00957-6 [paper, repository]

Characterizing the heterogeneity of neurodegenerative diseases through EEG normative modeling.

Journal: NPJ Parkinson's disease

Authors' code: MINDIG-1/NM-neurodeg (no license)

Status: code verified, 9 files readable

[17369] doi:10.1038/s41540-025-00519-9 [paper, repository]

Effective integration of multi-omics with prior knowledge to identify biomarkers via explainable graph neural networks.

Journal: NPJ systems biology and applications

Authors' code: Yi-Li/code-GNN-multi-omics (MIT)

Status: code verified, 44 files readable, 6 matches

[17370] doi:10.1038/s41598-025-01017-y [paper, repository]

Cross study transcriptomic investigation of Alzheimer's brain tissue discoveries and limitations.

Journal: Scientific reports

Authors' code: Zenodo 13685511 (CC-BY-4.0)

Status: code verified, 11 files readable

[17371] doi:10.1038/s41598-025-98652-2 [paper, repository]

Tiny visual latencies can profoundly impair implicit sensorimotor learning.

Journal: Scientific reports

Authors' code: harvardmotorlab/Latency (no license), AlkisMH/Latency (no license)

Status: code verified, 30 files readable

[17372] doi:10.1038/s42003-025-08134-4 [paper, repository]

Cortical representational geometry of diverse tasks reveals subject-specific and subject-invariant cognitive structures.

Journal: Communications biology

Authors' code: Zenodo 10581223 (CC-BY-4.0)

Status: code verified, 29 files readable, 4 matches

[17373] doi:10.1073/pnas.2417445122 [paper, data]

DDX24 spatiotemporally orchestrates VEGF and Wnt signaling during developmental angiogenesis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[17374] doi:10.1093/nc/niaf010 [paper, data]

Object relations are processed with, but not without, awareness.

Journal: Neuroscience of consciousness

Status: data only, 1 dataset cited

[17375] doi:10.1101/2025.05.08.652799 [paper, repository]

Stretch and flow at the gliovascular interface: high-fidelity modelling of astrocyte endfeet

Journal: bioRxiv (preprint)

Authors' code: Zenodo 15303023 (CC-BY-4.0)

Status: code verified, 58 files readable, 4 matches

[17376] doi:10.1162/netn_a_00434 [paper, repository]

Modelling low-dimensional interacting brain networks reveals organising principle in human cognition.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: yonisanzperl/ModellingManifoldModes (no license)

Status: code verified, 3 files readable

[17377] doi:10.1162/netn_a_00439 [paper, repository]

Metric structural human connectomes: Localization and multifractality of eigenmodes.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: colab.research.google.com/drive/1kmfvl3hohwuykxrwtkcclkykre_isauo (no license), iabs-neuro/driada (MIT)

Status: code verified, 318 files readable, 6 matches

[17378] doi:10.1371/journal.pcbi.1012835 [paper, repository]

A model of thalamo-cortical interaction for incremental binding in mental contour-tracing.

Journal: PLoS computational biology

Authors' code: schmidDan/incremental_binding (other)

Status: code verified, 31 files readable, 2 matches

[17379] doi:10.1371/journal.pone.0320519 [paper, repository]

Anatomically distinct cortical tracking of music and speech by slow (1-8Hz) and fast (70-120Hz) oscillatory activity.

Journal: PloS one

Authors' code: srosorio/Osorio_Assaneo_PONE_2025 (no license)

Status: code verified, 24 files readable, 6 matches

[17380] doi:10.1371/journal.pone.0322930 [paper, data]

Behavioural and EEG correlates of forward and backward priming-An exploratory study.

Journal: PloS one

Status: data only, 1 dataset cited

[17381] doi:10.1523/eneuro.0538-24.2025 [paper, repository]

Touchscreen Response Precision Is Sensitive to the Explore/Exploit Trade-off.

Journal: eNeuro

Authors' code: doi:10.5061/dryad.31zcrjdxt (no license)

Status: dead link

[17382] doi:10.2463/mrms.mp.2024-0206 [paper, repository]

Are Diffusion Models Effective Good Feature Extractors for MRI Discriminative Tasks?

Journal: Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine

Authors' code: SANCHES-Pedro/adni_preprocessing (no license), huggingface.co/google/ddpm-cifar10-32 (apache)

Status: code verified, 6 files readable, 2 matches

[17383] doi:10.3390/biomimetics10050296 [paper, repository]

Optimizing Class Imbalance in Facial Expression Recognition Using Dynamic Intra-Class Clustering.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: fuketing0417/DICC-Facial-Expression-Recognition (no license)

Status: code verified, 3 files readable

[17384] doi:10.7554/elife.101511 [paper, repository]

Non-feature-specific elevated responses and feature-specific backward replay in human brain induced by visual sequence exposure.

Journal: eLife

Authors' code: YunzheLiu/TDLM (no license), OSF hdjtr (no license)

Status: code verified, 30 files readable

[17385] doi:10.7554/elife.101667 [paper, data]

Adolescent alcohol exposure promotes mechanical allodynia and alters synaptic function at inputs from the basolateral amygdala to the prelimbic cortex.

Journal: eLife

Status: data only, 1 dataset cited

[17386] doi:10.7554/elife.101747 [paper, repository]

Dynamics of striatal action selection and reinforcement learning.

Journal: eLife

Authors' code: alitwinkumar/lindsey_etal_striatal_dynamics (GPL-3.0)

Status: code verified, 6 files readable, 2 matches

Wednesday, 7 May 2025 (38 papers)

[17387] doi:10.1007/s12671-025-02584-x [paper, data]

Multidimensional Analysis of Twin Sets During an Intensive Week-Long Meditation Retreat: A Pilot Study.

Journal: Mindfulness

Status: data only, 1 dataset cited

[17388] doi:10.1016/j.crmeth.2025.101034 [paper, repository]

CalliCog is an open-source cognitive neuroscience toolkit for freely behaving nonhuman primates.

Journal: Cell reports methods

Authors' code: NIMH-SCCN/callicog (CC0-1.0)

Status: code verified, 73 files readable, 4 matches

[17389] doi:10.1016/j.jlr.2025.100821 [paper, data]

Peroxisomal ether-glycerophospholipid synthesis is dysregulated after TBI.

Journal: Journal of lipid research

Status: data only, 1 dataset cited

[17390] doi:10.1038/s12276-025-01456-7 [paper, repository]

Quantitative dynamics of neural uncertainty in sensory processing and decision-making during discriminative learning.

Journal: Experimental & molecular medicine

Authors' code: toparkshin/s1uq_public (no license)

Status: code verified, 13 files readable, 1 match

[17391] doi:10.1038/s41467-025-56829-3 [paper, repository]

Machine learning-based meta-analysis reveals gut microbiome alterations associated with Parkinson's disease.

Journal: Nature communications

Authors' code: cschu/gff_quantifier (MIT), Zenodo 7183678 (CC-BY-4.0), StfnRomano/PD_ML_meta (GPL-3.0), Zenodo 14698367 (GPL-3.0)

Status: code verified, 284 files readable, 6 matches

[17392] doi:10.1038/s41467-025-58002-2 [paper, data]

Top-down modulation of sensory processing and mismatch in the mouse posterior parietal cortex.

Journal: Nature communications

Status: data only, 1 dataset cited

[17393] doi:10.1038/s41467-025-59156-9 [paper, repository]

Genomic landscape of diffuse glioma revealed by whole genome sequencing.

Journal: Nature communications

Authors' code: kircherlab/CADD-scripts (other), intogen/intogen-plus (GPL-3.0)

Status: code verified, 150 files readable, 2 matches

[17394] doi:10.1038/s41467-025-59530-7 [paper, repository]

A high-performance fluorescent sensor spatiotemporally reveals cell-type specific regulation of intracellular adenosine in vivo.

Journal: Nature communications

Authors' code: damiers/wave_analysis (GPL-3.0)

Status: code verified, 4 files readable, 1 match

[17395] doi:10.1038/s41467-025-59611-7 [paper, repository]

Habenula contributions to negative self-cognitions.

Journal: Nature communications

Authors' code: pohankung/NegativeBeliefs_Habenula_DCM (CC-BY-SA-4.0), Zenodo 15151291 (CC-BY-SA-4.0)

Status: code verified, 12 files readable, 9 matches

[17396] doi:10.1038/s41540-025-00520-2 [paper, repository]

Neural mechanisms balancing accuracy and flexibility in working memory and decision tasks.

Journal: NPJ systems biology and applications

Authors' code: OSF hw5rd (no license)

Status: code verified

[17397] doi:10.1038/s41562-025-02145-1 [paper, repository]

Genome-wide association meta-analysis of age at onset of walking in over 70,000 infants of European ancestry.

Journal: Nature human behaviour

Authors' code: genomicsem/genomicsem (GPL-3.0), precimed/python_convert (GPL-3.0), PerlineDemange/GeneticNurtureNonCog (no license)

Status: code verified, 88 files readable, 5 matches

[17398] doi:10.1038/s41586-025-08969-1 [paper, repository]

Striatum supports fast learning but not memory recall.

Journal: Nature

Authors' code: kimerein/k-glm (no license), kimerein/tensor_regression (MIT), kimerein/integrate-phys-and-beh (no license), kimerein/KR_Analysis_Toolbox (no license), kimerein/reach-behavior-analysis (no license), kimerein/reachBehavior (no license), kimerein/photometry (no license), kimerein/behaviorRig (no license), kimerein/mat_code (no license)

Status: code verified, 2,856 files readable, 27 matches

[17399] doi:10.1038/s41586-025-08985-1 [paper, repository]

Light-microscopy-based connectomic reconstruction of mammalian brain tissue.

Journal: Nature

Authors' code: danzllab/LICONN (BSD-2-Clause), Yujie-S/Click-ExM_data_process_and_example (MIT), google-research/sofima (Apache-2.0), google/ffn (Apache-2.0), google/neuroglancer (Apache-2.0), funkelab/gunpowder (MIT), gitlab.mpcdf.mpg.de/connectomics/human_primate (MIT), Zenodo 10534541 (Apache-2.0)

Status: code verified, 1,982 files readable, 24 matches

[17400] doi:10.1038/s41598-025-00292-z [paper, data]

EEG-based neurodegenerative disease diagnosis: comparative analysis of conventional methods and deep learning models.

Journal: Scientific reports

Status: data only, 3 datasets cited

[17401] doi:10.1038/s41598-025-00556-8 [paper, data]

Working memory filtering at encoding and maintenance in healthy ageing, Alzheimer's and Parkinson's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17402] doi:10.1038/s41598-025-01129-5 [paper, data]

Enhanced classification of tinnitus patients using EEG microstates and deep learning techniques.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17403] doi:10.1038/s41598-025-99272-6 [paper, repository]

Event driven neural network on a mixed signal neuromorphic processor for EEG based epileptic seizure detection.

Journal: Scientific reports

Authors' code: Zenodo 10800793 (CC-BY-SA-4.0)

Status: code verified

[17404] doi:10.1088/1741-2552/add090 [paper, data]

Analysis of electrochemical impedance spectroscopy data for sputtered iridium oxide electrodes.

Journal: Journal of neural engineering

Status: data only, 1 dataset cited

[17405] doi:10.1093/braincomms/fcaf181 [paper, repository]

Two distinct trajectories of brain volume loss in myotonic dystrophy type 1 via machine learning.

Journal: Brain communications

Authors' code: ucl-pond (no license)

Status: code verified

[17406] doi:10.1093/pnasnexus/pgaf146 [paper, data]

Astrocyte <i>Fabp7</i> modulates nocturnal seizure threshold and activity-dependent gene expression in mouse brain.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[17407] doi:10.1098/rsos.250465 [paper, data]

Gustatory sensitivity to amino acids in bumblebee mouthparts.

Journal: Royal Society open science

Status: data only, 1 dataset cited

[17408] doi:10.1101/2025.05.01.651195 [paper, repository]

Alzheimer’s disease risk gene <i>Wwox</i> protects against amyloid pathology through metabolic reprogramming

Journal: bioRxiv (preprint)

Authors' code: Fly-Cardiff/sleep_analysis (no license), Fly-Cardiff (no license)

Status: code verified, 2 files readable

[17409] doi:10.1101/2025.05.06.652374 [paper]

Complement biosynthesis in human brain: Insights from single-nucleus transcriptomics of hippocampus

Journal: bioRxiv (preprint)

Status: data only

[17410] doi:10.1117/1.jbo.30.5.056003 [paper]

Speckle pattern analysis with deep learning for low-cost stroke detection: a phantom-based feasibility study.

Journal: Journal of biomedical optics

Status: code on request

[17411] doi:10.1162/imag_a_00555 [paper, repository]

Association between theta-band resting-state functional connectivity and declarative memory abilities in children.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF axhmw (no license)

Status: empty repository

[17412] doi:10.1162/imag_a_00559 [paper, repository]

Body size and intracranial volume interact with the structure of the central nervous system: A multi-center in vivo neuroimaging study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: spine-generic/protocols (MIT), spinalcordtoolbox/spinalcordtoolbox (LGPL-3.0), spine-generic/spine-generic (MIT)

Status: code verified, 268 files readable, 15 matches

[17413] doi:10.1162/imag_a_00568 [paper, repository]

Contextual expectations in the real-world modulate low-frequency neural oscillations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 11394630 (CC0-1.0)

Status: code verified

[17414] doi:10.1162/imag_a_00569 [paper, data]

Fiber microstructure quantile (FMQ) regression: A novel statistical approach for analyzing white matter bundles from periphery to core.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request, 1 dataset cited

[17415] doi:10.1177/0271678x251338952 [paper]

Neural and vascular contributions to sensory impairments in a human alpha-synuclein transgenic mouse model of Parkinson's disease.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Status: code on request

[17416] doi:10.1186/s13020-025-01106-0 [paper, data]

Potential scalp acupuncture and brain stimulation targets for common neurological disorders: evidence from neuroimaging studies.

Journal: Chinese medicine

Status: data only, 1 dataset cited

[17417] doi:10.1186/s40478-025-02013-z [paper, repository]

Temporal transcriptomic changes in the THY-Tau22 mouse model of tauopathy display cell type- and sex-specific differences.

Journal: Acta neuropathologica communications

Authors' code: uniluxembourg/lcsb/biomedical-data-science/bds/thy-tau22-longitudinal-analysis (MIT)

Status: code verified, 9 files readable, 16 matches

[17418] doi:10.1192/bjp.2025.71 [paper]

Changes in brain function during negative emotion processing following cognitive-behavioural therapy in depressive disorders.

Journal: The British journal of psychiatry : the journal of mental science

Status: code on request

[17419] doi:10.1249/mss.0000000000003751 [paper, data]

Cardiovascular Exercise Improves Inhibitory Control in Sedentary Young Adults: A 12-wk Randomized Controlled Trial.

Journal: Medicine and science in sports and exercise

Status: data only, 1 dataset cited

[17420] doi:10.1371/journal.pcbi.1013092 [paper, repository]

Noise correlations and neuronal diversity may limit the utility of winner-take-all readout in a pop out visual search task.

Journal: PLoS computational biology

Authors' code: ilab.usc.edu/bu (no license), OriHendler/Winner-take-all-fails-to-account-for-pop-out-accuracy (no license), Zenodo 13202915 (CC-BY-4.0)

Status: code verified, 216 files readable

[17421] doi:10.1371/journal.pone.0323113 [paper, data]

Fiber architecture in the human ventromedial striatum and its relation with the bed nucleus of the stria terminalis.

Journal: PloS one

Status: data only, 2 datasets cited

[17422] doi:10.1371/journal.pone.0323179 [paper, repository]

WTools: A MATLAB-based toolbox for time-frequency analysis of infant data.

Journal: PloS one

Authors' code: cogdevtools/wtools (GPL-3.0)

Status: code verified, 31 files readable, 4 matches

[17423] doi:10.1371/journal.pone.0323201 [paper, repository]

Susceptibility to auditory feedback manipulations and individual variability.

Journal: PloS one

Authors' code: MugeOzker/Susceptibility-DAF-PAF (no license)

Status: code verified, 2 files readable, 1 match

[17424] doi:10.3389/fnins.2025.1525017 [paper]

TREM2 supports neuronal protection and microglial reactivity without an effect on misfolded protein deposition in chronic neurodegenerative prion disease.

Journal: Frontiers in neuroscience

Status: data only

Tuesday, 6 May 2025 (32 papers)

[17425] doi:10.1016/j.isci.2025.112591 [paper]

The maternal vGluT2 and embryonic mGluR3 signaling relay system controls offspring wing dimorphism in pea aphid.

Journal: iScience

Status: code on request

[17426] doi:10.1016/j.isci.2025.112595 [paper]

Global analysis of excitotoxicity-induced alterations in RNA structure and RNA-protein binding in neurons.

Journal: iScience

Status: code on request

[17427] doi:10.1016/j.jaacop.2025.04.007 [paper, repository]

Environmental, Health, and Psychological Factors Predict Alcohol Sipping in Childhood: A Machine Learning Analysis of the ABCD Study.

Journal: JAACAP open

Authors' code: explainable-sipping/sipping-paper (no license)

Status: code verified, 6 files readable, 4 matches

[17428] doi:10.1021/acssynbio.4c00742 [paper, repository]

Induced Neural Progenitor Specification from Human Pluripotent Stem Cells by a Refined Synthetic Notch Platform.

Journal: ACS synthetic biology

Authors' code: andrewkjar/SynNotch_scRNAseq (no license)

Status: code verified, 2 files readable

[17429] doi:10.1038/s41467-025-59400-2 [paper, repository]

Astrocytic GLUT1 deletion in adult mice enhances glucose metabolism and resilience to stroke.

Journal: Nature communications

Authors' code: einlabzurich/fretanalysis (no license)

Status: code verified, 96 files readable, 2 matches

[17430] doi:10.1038/s41467-025-59430-w [paper, data]

A highly conserved neuronal microexon in DAAM1 controls actin dynamics, RHOA/ROCK signaling, and memory formation.

Journal: Nature communications

Status: code on request, 2 datasets cited

[17431] doi:10.1038/s41531-025-00954-9 [paper]

Modulatory effect of levodopa on the basal ganglia-cerebellum connectivity in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[17432] doi:10.1038/s41597-025-05028-2 [paper, repository]

Lifespan reference curves for harmonizing multi-site regional brain white matter metrics from diffusion MRI.

Journal: Scientific data

Authors' code: ahzhu/eharmonize (no license), ahzhu/neuroharmonize (MIT), ENIGMA-git (no license)

Status: code verified, 17 files readable, 4 matches

[17433] doi:10.1038/s41598-025-96816-8 [paper, data]

An exploratory analysis of longitudinal artificial intelligence for cognitive fatigue detection using neurophysiological based biosignal data.

Journal: Scientific reports

Status: data only, 2 datasets cited

[17434] doi:10.1038/s41598-025-97674-0 [paper, data]

MINDSETS: Multi-omics Integration with Neuroimaging for Dementia Subtyping and Effective Temporal Study.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17435] doi:10.1038/s42003-025-08132-6 [paper, repository]

Brain connectome gradient dysfunction in patients with end-stage renal disease and its association with clinical phenotype and cognitive deficits.

Journal: Communications biology

Authors' code: MICA-MNI/BrainSpace (BSD-3-Clause), OSF f8eas (no license)

Status: code verified, 129 files readable, 1 match

[17436] doi:10.1038/s44303-025-00081-3 [paper, repository]

Temperature dependent chemical shifts of pyruvate and lactate enable in vivo hyperpolarized &lt;sup&gt;13&lt;/sup&gt;C MRSI thermometry.

Journal: Npj imaging

Authors' code: Schilling-Lab/pyr-lac-thermometry-study (no license)

Status: code verified, 56 files readable, 4 matches

[17437] doi:10.1073/pnas.2503978122 [paper, data]

Mechanism and application of thiol-disulfide redox biosensors with a fluorescence-lifetime readout.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 4 datasets cited

[17438] doi:10.1080/19768354.2025.2498926 [paper, data]

TRIM22 functions as a scaffold protein for autophagy initiation.

Journal: Animal cells and systems

Status: data only, 1 dataset cited

[17439] doi:10.1088/1741-2552/adc9e3 [paper, repository]

Simplified control of neuromuscular stimulation systems for restoration of reach with limb stiffness as a modifiable degree of freedom.

Journal: Journal of neural engineering

Authors' code: Zenodo 15151235 (CC-BY-4.0)

Status: code verified, 2 files readable

[17440] doi:10.1093/braincomms/fcaf173 [paper]

Cerebrovascular co-pathology and cholinergic white matter pathways along the Lewy body continuum.

Journal: Brain communications

Status: code on request

[17441] doi:10.1093/braincomms/fcaf174 [paper, data]

Infratentorial white matter integrity as a potential biomarker for post-stroke aphasia.

Journal: Brain communications

Status: data only, 1 dataset cited

[17442] doi:10.1093/braincomms/fcaf176 [paper, data]

Post-stroke sensory hypersensitivity: insights from lesion-symptom and disconnection mapping.

Journal: Brain communications

Status: data only, 1 dataset cited

[17443] doi:10.1093/geroni/igaf045 [paper, data]

Gait Variability Is Associated With Gray Matter Volumes Implicated in Cognitive Function: A Cross-Sectional Analysis From the AGUEDA Trial.

Journal: Innovation in aging

Status: data only, 1 dataset cited

[17444] doi:10.1093/nc/niaf011 [paper, repository]

A quantum microtubule substrate of consciousness is experimentally supported and solves the binding and epiphenomenalism problems.

Journal: Neuroscience of consciousness

Authors' code: Zenodo 23167802 (apgl-v3), sparkainlp-x/quantum-claims-passport (AGPL-3.0), Zenodo 23167801 (apgl-v3)

Status: code verified, 12 files readable

[17445] doi:10.1162/imag_a_00564 [paper, repository]

Dopamine alters functional gradients in Parkinson's disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF cf4m2 (no license), human.brain-map.org/static/download (no license)

Status: code verified, 2 files readable, 5 matches

[17446] doi:10.1186/s12916-025-04089-9 [paper, repository]

Molecular mechanisms explaining sex-specific functional connectivity changes in chronic insomnia disorder.

Journal: BMC medicine

Authors' code: SarahMorgan/Morphometric_Similarity_SZ (MIT), frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 9 files readable

[17447] doi:10.1186/s12987-025-00653-w [paper, repository]

Individual-level cortical morphological network analysis in idiopathic normal pressure hydrocephalus: diagnostic and prognostic insights.

Journal: Fluids and barriers of the CNS

Authors' code: RafaelRomeroGarcia/subParcellation (GPL-3.0)

Status: code verified, 39 files readable

[17448] doi:10.1186/s13024-025-00841-0 [paper, data]

Cerebrospinal fluid proteome profiling across the Alzheimer's disease continuum: a step towards solving the equation for 'X'.

Journal: Molecular neurodegeneration

Status: data only, 3 datasets cited

[17449] doi:10.1186/s13041-025-01206-w [paper, data]

GAS reduced inflammatory responses in activated microglia by regulating the Ccr2/Akt/Gsk-3β pathway.

Journal: Molecular brain

Status: data only, 1 dataset cited

[17450] doi:10.1242/dmm.052139 [paper, repository]

Identifying links between cardiovascular disease and insomnia by modeling genes from a pleiotropic locus.

Journal: Disease models & mechanisms

Authors' code: jameswalkerlab/Gill_et.al (no license)

Status: dead link

[17451] doi:10.1371/journal.pone.0309489 [paper, repository]

Quantitative 3D histochemistry reveals region-specific amyloid-β reduction by the antidiabetic drug netoglitazone.

Journal: PloS one

Authors' code: aecon/3D-microglia-netoglitazone (MIT)

Status: code verified, 34 files readable, 2 matches

[17452] doi:10.3389/fncom.2025.1565660 [paper, repository]

Computational analysis of learning in young and ageing brains.

Journal: Frontiers in computational neuroscience

Authors' code: jayanih/ageing-brains-learning-models (no license)

Status: code verified, 11 files readable, 2 matches

[17453] doi:10.3389/fnhum.2025.1583342 [paper, data]

Adversarial denoising of EEG signals: a comparative analysis of standard GAN and WGAN-GP approaches.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[17454] doi:10.3389/fninf.2025.1515873 [paper, repository]

Net2Brain: a toolbox to compare artificial vision models with human brain responses.

Journal: Frontiers in neuroinformatics

Authors' code: cvai-roig-lab/Net2Brain (MIT)

Status: code verified, 87 files readable, 10 matches

[17455] doi:10.3758/s13415-025-01300-5 [paper, repository]

Studying human habit formation through motor sequence learning.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF trxz7 (no license)

Status: code verified, 2 files readable, 1 match

[17456] doi:10.7759/cureus.83548 [paper, data]

KARNet: A Novel Deep-Learning Approach for Dementia Stage Detection in MRI Images.

Journal: Cureus

Status: data only, 1 dataset cited

Monday, 5 May 2025 (33 papers, 16 on this page)

[17457] doi:10.1002/mdc3.70108 [paper]

Functional Connectivity and Volumetrics Improve Outcome Prediction for Deep Brain Stimulation in Parkinson's Disease.

Journal: Movement disorders clinical practice

Status: code on request

[17458] doi:10.1007/s00401-025-02884-5 [paper, repository]

Oligodendroglia vulnerability in the human dorsal striatum in Parkinson's disease.

Journal: Acta neuropathologica

Authors' code: ayushnoori/brainstorm (MPL-2.0)

Status: code verified, 19 files readable, 2 matches

[17459] doi:10.1007/s11571-025-10253-x [paper, data]

AI-driven early diagnosis of specific mental disorders: a comprehensive study.

Journal: Cognitive neurodynamics

Status: data only, 2 datasets cited

[17460] doi:10.1016/j.ajcnut.2025.04.032 [paper]

Maternal prenatal nut and seafood consumption and child neuropsychological function from 4 to 15 years of age: a population-based cohort study.

Journal: The American journal of clinical nutrition

Status: code on request

[17461] doi:10.1016/j.isci.2025.112439 [paper, data]

Immediate glucose signaling transmitted via the vagus nerve in gut-brain neural communication.

Journal: iScience

Status: data only, 3 datasets cited

[17462] doi:10.1016/j.isci.2025.112588 [paper, data]

Aesthetic experiences across visual perception and mental imagery: Behaviorally indistinguishable, neurally distinct.

Journal: iScience

Status: data only, 2 datasets cited

[17463] doi:10.1016/j.nicl.2025.103796 [paper, repository]

Exploring the effect of multi-modal intervention against cognitive decline on atrophy and small vessel disease imaging markers in the AgeWell.de imaging study.

Journal: NeuroImage. Clinical

Authors' code: fBeyer89/preproc_AgeWell (MIT), atsuch/SHIVApreproc (no license)

Status: code verified, 106 files readable, 11 matches

[17464] doi:10.1016/j.xhgg.2025.100447 [paper, repository]

Integrating spatial transcriptomics and snRNA-seq data enhances differential gene expression analysis results of AD-related phenotypes.

Journal: HGG advances

Authors' code: tangjiji199645/CLS-CTS-DGE (no license), QihuangZhang/CeLEry (MIT)

Status: code verified, 69 files readable, 5 matches

[17465] doi:10.1016/j.xpro.2025.103800 [paper, repository]

Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals.

Journal: STAR protocols

Authors' code: Zenodo 13909372 (CC-BY-4.0), shihche0716/pva-ca-data-analysis (no license)

Status: code verified, 16 files readable, 2 matches

[17466] doi:10.1021/acsomega.5c01141 [paper, data]

Self-Organizing Proteinoid-Actin Networks: Structure and Voltage Dynamics.

Journal: ACS omega

Status: data only, 1 dataset cited

[17467] doi:10.1038/s41467-025-59538-z [paper, repository]

Nageotte nodules in human dorsal root ganglia reveal neurodegeneration in diabetic peripheral neuropathy.

Journal: Nature communications

Authors' code: utdal/Nageotte-Nodule-Analysis (MIT)

Status: code verified, 6 files readable, 6 matches

[17468] doi:10.1038/s41467-025-59545-0 [paper, data]

Structures of native SV2A reveal the binding mode for tetanus neurotoxin and anti-epileptic racetams.

Journal: Nature communications

Status: data only, 1 dataset cited

[17469] doi:10.1038/s41467-025-59562-z [paper, data]

Dysregulated mast cell activation induced by diabetic milieu exacerbates the progression of diabetic peripheral neuropathy in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[17470] doi:10.1038/s41531-025-00947-8 [paper]

Comparison of oscillatory activity in substantia nigra pars reticulata between Parkinson's disease and dystonia.

Journal: NPJ Parkinson's disease

Status: code on request

[17471] doi:10.1038/s41598-025-00014-5 [paper, repository]

brain2print AI powered web tool for creating 3D printable brain models.

Journal: Scientific reports

Authors' code: neurolabusc.github.io/niivue-simplify (no license), niivue/niivue-onnx (BSD-2-Clause), niivue/brain2print (MIT), niivue/ct2print (BSD-2-Clause)

Status: code verified, 21 files readable, 4 matches

[17472] doi:10.1038/s41598-025-00403-w [paper, data]

Hybrid transformer and convolution iteratively optimized pyramid network for brain large deformation image registration.

Journal: Scientific reports

Status: data only, 1 dataset cited

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