Every paper, by date: page 80

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 80 of 200: 29 April 2025 to 22 April 2025.

Tuesday, 29 April 2025 (47 papers, 16 on this page)

[17697] doi:10.1371/journal.pbio.3003048 [paper, repository]

A sensitive soma-localized red fluorescent calcium indicator for in vivo imaging of neuronal populations at single-cell resolution.

Journal: PLoS biology

Authors' code: Shihao-Neuro/SomaFRCaMPi (MIT), Zenodo 14942673 (MIT)

Status: code verified, 45 files readable, 6 matches

[17698] doi:10.1371/journal.pbio.3003120 [paper, repository]

Comparative single-cell transcriptomic atlases of drosophilid brains suggest glial evolution during ecological adaptation.

Journal: PLoS biology

Authors' code: Zenodo 15016454 (CC-BY-4.0)

Status: code verified, 37 files readable, 15 matches

[17699] doi:10.1371/journal.pgen.1011680 [paper, data]

In vivo AGO-APP identifies a module of microRNAs cooperatively preserving neural progenitors.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[17700] doi:10.1371/journal.pone.0319641 [paper, repository]

A minimalist computational model of slice hippocampal circuitry based on Neuronify for teaching neuroscience.

Journal: PloS one

Authors' code: figshare 28068563 (CC-BY-4.0), figshare 28068602 (CC-BY-4.0)

Status: code verified

[17701] doi:10.1523/eneuro.0381-24.2025 [paper, repository]

Individual Differences in Cognition and Perception Predict Neural Processing of Speech in Noise for Audiometrically Normal Listeners.

Journal: eNeuro

Authors' code: xdf-modules/xdf-EEGLAB (BSD-2-Clause)

Status: code verified, 7 files readable

[17702] doi:10.2147/ijn.s511506 [paper, repository]

Nano-Encapsulated Taro Lectin Can Cross an in vitro Blood-Brain Barrier, Induce Apoptosis and Autophagy and Inhibit the Migration of Human U-87 MG Glioblastoma Cells.

Journal: International journal of nanomedicine

Authors' code: bcrj.org.br (no license)

Status: code verified

[17703] doi:10.3389/fnimg.2025.1554769 [paper, data]

A deep neural network for adaptive spatial smoothing of task fMRI data.

Journal: Frontiers in neuroimaging

Status: data only, 1 dataset cited

[17704] doi:10.3389/frai.2025.1563016 [paper, data]

An efficient method for early Alzheimer's disease detection based on MRI images using deep convolutional neural networks.

Journal: Frontiers in artificial intelligence

Status: data only, 1 dataset cited

[17705] doi:10.3390/brainsci15050473 [paper, data]

Epitranscriptomic Analysis of the Ventral Hippocampus in a Mouse Model of Post-Traumatic Stress Disorder Following Deep Brain Stimulation Treatment of the Basolateral Amygdala.

Journal: Brain sciences

Status: data only, 1 dataset cited

[17706] doi:10.3390/cells14090652 [paper, data]

Dopamine Receptor D3 Induces Transient, mTORC1-Dependent Autophagy That Becomes Persistent, AMPK-Mediated, and Neuroprotective in Experimental Models of Huntington's Disease.

Journal: Cells

Status: data only, 1 dataset cited

[17707] doi:10.3390/s25092800 [paper, repository]

A Multidimensional Particle Swarm Optimization-Based Algorithm for Brain MRI Tumor Segmentation.

Journal: Sensors (Basel, Switzerland)

Authors' code: bogazsombor/MDPSO_for_MRI_segmentation (MIT)

Status: code verified, 19 files readable, 5 matches

[17708] doi:10.4103/nrr.nrr-d-24-00794 [paper, data]

Molecular mechanisms after optic nerve injury: Neurorepair strategies from a transcriptomic perspective.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[17709] doi:10.4103/nrr.nrr-d-24-01190 [paper]

Short-lived Niemann-Pick type C mice with accelerated brain aging as a novel model for Alzheimer's disease research.

Journal: Neural regeneration research

Status: data only

[17710] doi:10.7554/elife.85599 [paper, repository]

Leveraging place field repetition to understand positional versus nonpositional inputs to hippocampal field CA1.

Journal: eLife

Authors' code: whock3/ratterdam (no license)

Status: code verified, 221 files readable, 5 matches

[17711] doi:10.7554/elife.95629 [paper, data]

Olfactory ensheathing cells from adult female rats are hybrid glia that promote neural repair.

Journal: eLife

Status: data only, 1 dataset cited

[17712] doi:10.7554/elife.97671 [paper, data]

Microglia aging in the hippocampus advances through intermediate states that drive activation and cognitive decline.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 28 April 2025 (46 papers)

[17713] doi:10.1002/mp.17855 [paper, repository]

Segmentation-assisted vessel centerline extraction from cerebral CT Angiography.

Journal: Medical physics

Authors' code: Liusj-gh/DTUNet (no license)

Status: code verified, 4 files readable, 1 match

[17714] doi:10.1007/s12035-025-04957-8 [paper, repository]

L-DOPA Induces Spatially Discrete Changes in Gene Expression in the Forebrain of Mice with a Progressive Loss of Dopaminergic Neurons.

Journal: Molecular neurobiology

Authors' code: annaradli/tif-ldopa-slide1 (MIT), annaradli/tif-ldopa-phenotype (MIT)

Status: code verified, 26 files readable, 6 matches

[17715] doi:10.1016/j.apsb.2025.04.024 [paper, data]

Discovery of powerful multifaceted antioxidant for combating oxidative stress associated with neurodegenerative disorders.

Journal: Acta pharmaceutica Sinica. B

Status: data only, 1 dataset cited

[17716] doi:10.1016/j.bbrep.2025.102026 [paper, data]

High-resolution transcriptome analysis on a mouse model of neonatal hypoxic-ischemic encephalopathy using single-nucleus RNA-seq.

Journal: Biochemistry and biophysics reports

Status: data only, 1 dataset cited

[17717] doi:10.1016/j.crmeth.2025.101032 [paper, repository]

CHAS infers cell type-specific signatures in bulk brain histone acetylation studies of neurological and psychiatric disorders.

Journal: Cell reports methods

Authors' code: Marzi-lab/CHAS (GPL-3.0), Marzi-lab/CHAS_manuscript (no license), Zenodo 15120736 (GPL-3.0), bulik/ldsc (GPL-3.0)

Status: code verified, 91 files readable, 8 matches

[17718] doi:10.1016/j.isci.2025.112539 [paper, repository]

Functional thalamocortical innervation of VIP- and SST-expressing GABAergic interneurons in mouse barrel cortex.

Journal: iScience

Authors' code: Zenodo 15013697 (CC-BY-4.0), Zenodo 15208531 (CC-BY-4.0), mfeyerab/functionalthalamocortical (no license)

Status: code verified, 4 files readable, 1 match

[17719] doi:10.1038/s41467-025-58452-8 [paper, repository]

Investigative needle core biopsies support multimodal deep-data generation in glioblastoma.

Journal: Nature communications

Authors' code: labsyspharm/cd73_coy_spatialcorrelation (MIT), Zenodo 6628875 (other-open), cycif.org (no license), Zenodo 14720361 (CC-BY-4.0), Zenodo 6628874 (other-open)

Status: code verified, 47 files readable, 1 match

[17720] doi:10.1038/s41467-025-58860-w [paper, repository]

Parallel processing of past and future memories through reactivation and synaptic plasticity mechanisms during sleep.

Journal: Nature communications

Authors' code: fccaa/NMF_custom (no license), oist-ncbc/engramtobe_simulation (MIT), IdlingBrainUT/Ghandour2025_NatureCommunications (no license), Zenodo 14963950 (CC-BY-4.0), Zenodo 14978317 (MIT)

Status: code verified, 109 files readable, 1 match

[17721] doi:10.1038/s41467-025-59115-4 [paper, repository]

Large-scale transcriptomic analyses of major depressive disorder reveal convergent dysregulation of synaptic pathways in excitatory neurons.

Journal: Nature communications

Authors' code: LieberInstitute/goesHyde_mdd_rnaseq (no license), Zenodo 15013040 (CC-BY-4.0)

Status: code verified, 352 files readable, 11 matches

[17722] doi:10.1038/s41598-025-95053-3 [paper, data]

MuSK is a substrate for CaMK2β but this interaction is dispensable for MuSK activation in vivo.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17723] doi:10.1038/s41598-025-95803-3 [paper, data]

Automatic smart brain tumor classification and prediction system using deep learning.

Journal: Scientific reports

Status: data only, 5 datasets cited

[17724] doi:10.1038/s41598-025-98399-w [paper]

Automated segmentation for cortical thickness of the medial perirhinal cortex.

Journal: Scientific reports

Status: code on request

[17725] doi:10.1038/s42003-025-08092-x [paper, repository]

Single-nucleus RNA sequencing reveals a preclinical model for the most common subtype of glioblastoma.

Journal: Communications biology

Authors' code: laugarvi/GL261-GSC-GBM (no license)

Status: code verified, 4 files readable, 1 match

[17726] doi:10.1038/s44321-025-00237-z [paper, data]

A novel model of glioblastoma recurrence to identify therapeutic vulnerabilities.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[17727] doi:10.1073/pnas.2411446122 [paper, repository]

Gag proteins encoded by endogenous retroviruses are required for zebrafish development.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: jonathan-wells/bhikhari (no license)

Status: code verified, 7 files readable, 7 matches

[17728] doi:10.1073/pnas.2412243122 [paper]

A hierarchy of processing complexity and timescales for natural sounds in the human auditory cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[17729] doi:10.1073/pnas.2418431122 [paper, data]

Cryptic genetic variation in brain gene expression precedes the evolution of cannibalism in spadefoot toad tadpoles.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[17730] doi:10.1073/pnas.2425494122 [paper, data]

Design and structural basis of selective 1,4-dihydropyridine inhibitors of the calcium-activated potassium channel K<sub>Ca</sub>3.1.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[17731] doi:10.1080/19768354.2025.2493258 [paper, repository]

Early postnatal exposure to bicuculline modulates E/I balance and induces ASD-like behavioral phenotypes in mice.

Journal: Animal cells and systems

Authors' code: ncbi.nlm.nih.gov (no license)

Status: code verified

[17732] doi:10.1093/psyrad/kkaf008 [paper, data]

White matter functional connectome gradient dysfunction in major depressive disorder.

Journal: Psychoradiology

Status: data only, 1 dataset cited

[17733] doi:10.1101/2025.04.23.650243 [paper, data]

Differential changes in the effective neural drive following new motor skill acquisition between vastus lateralis and medialis

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[17734] doi:10.1101/2025.04.27.25326490 [paper, repository]

GWAS of macro-scale resting state functional brain networks identify shared biology with brain structure and autism

Journal: medRxiv (preprint)

Authors' code: bulik/ldsc (GPL-3.0), cnfoley/hyprcoloc (no license), yh464/2023-rsfc_gwas (no license), yh464/genetics_qc (MIT), yh464/gwas_pipeline (MIT)

Status: code verified, 183 files readable, 10 matches

[17735] doi:10.1101/2025.04.28.650935 [paper, repository]

Neuronal processes contain the essential components for the late steps of ribosome biogenesis

Journal: bioRxiv (preprint)

Authors' code: gitlab.mpcdf.mpg.de/mpibr/schu/trnatools (no license)

Status: code verified, 48 files readable, 1 match

[17736] doi:10.1111/epi.18413 [paper, data]

Cell type mapping of mild malformations of cortical development with oligodendroglial hyperplasia in epilepsy using single-nucleus multiomics.

Journal: Epilepsia

Status: data only, 1 dataset cited

[17737] doi:10.1162/imag_a_00522 [paper, data]

On the validity of fMRI mega-analyses using data processed with different pipelines.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 2 datasets cited

[17738] doi:10.1162/imag_a_00523 [paper, repository]

A sensitivity analysis of preprocessing pipelines: Toward a solution for multiverse analyses.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: openneuropet/multiverse_tools (MIT)

Status: code verified, 19 files readable, 4 matches

[17739] doi:10.1162/imag_a_00551 [paper, repository]

Lifespan oscillatory dynamics in lexical production: A population-based MEG resting-state analysis.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: LPNC-LANG/MEG_CAMCAN_2024 (no license)

Status: code verified, 35 files readable, 15 matches

[17740] doi:10.1186/s12872-025-04728-2 [paper, data]

Research on noninvasive electrophysiologic imaging based on cardiac electrophysiology simulation and deep learning methods for the inverse problem.

Journal: BMC cardiovascular disorders

Status: data only, 1 dataset cited

[17741] doi:10.1186/s12883-025-04198-1 [paper, data]

Neurologic symptoms as a hallmark of glymphatic alteration in recovered patients with COVID-19.

Journal: BMC neurology

Status: data only, 3 datasets cited

[17742] doi:10.1186/s13073-025-01469-x [paper, repository]

Regional and aging-specific cellular architecture of non-human primate brains.

Journal: Genome medicine

Authors' code: WanYMEN/Regional-and-aging-specific-cellular-architecture-of-non-human-primate-brains (no license)

Status: code verified, 14 files readable, 16 matches

[17743] doi:10.1242/dmm.052029 [paper, repository]

Patient-specific mutation of contact site protein Tomm70 causes neurodegeneration.

Journal: Disease models & mechanisms

Authors' code: colab.research.google.com/drive/1m0vyyh-vmq4rgtb156qckqtnul6odagp (no license)

Status: code verified

[17744] doi:10.1371/journal.pbio.3003079 [paper, repository]

Dorsomedial and ventromedial prefrontal cortex lesions differentially impact social influence and temporal discounting.

Journal: PLoS biology

Authors' code: OSF qzurp (no license)

Status: code verified, 18 files readable, 7 matches

[17745] doi:10.1371/journal.pcbi.1013006 [paper, repository]

Dynamic modeling of EEG responses to natural speech reveals earlier processing of predictable words.

Journal: PLoS computational biology

Authors' code: powerfulbean/DynamicTRF (GPL-3.0)

Status: code verified, 18 files readable, 3 matches

[17746] doi:10.1371/journal.pone.0314690 [paper, data]

Daily high doses of atorvastatin alter neuronal morphology in a juvenile songbird model.

Journal: PloS one

Status: data only, 1 dataset cited

[17747] doi:10.1523/eneuro.0010-25.2025 [paper, repository]

Time Varying Encoding of Grasping Type and Force in the Primate Motor Cortex.

Journal: eNeuro

Authors' code: MerchantLabINB/GraspForce2025 (no license)

Status: code verified, 17 files readable, 5 matches

[17748] doi:10.1523/eneuro.0038-25.2025 [paper, repository]

An Open-Source Joystick Platform for Investigating Forelimb Motor Control, Auditory-Motor Integration, and Value-Based Decision-Making in Head-Fixed Mice.

Journal: eNeuro

Authors' code: margolislab/Open-Source-Joystick-Platform (no license)

Status: code verified, 33 files readable, 5 matches

[17749] doi:10.31083/ap40031 [paper, repository]

Effectiveness of Eye Movement Desensitization and Reprocessing (EMDR) in Treating Borderline Personality Disorder: A Randomized Controlled Trial.

Journal: Alpha psychiatry

Authors' code: Zenodo 19774522 (MIT), Zenodo 19774523 (MIT)

Status: code verified, 10 files readable, 1 match

[17750] doi:10.3389/fncom.2025.1559936 [paper, repository]

Engineered biological neuronal networks as basic logic operators.

Journal: Frontiers in computational neuroscience

Authors' code: Hullimulli/engineered_biological_neural_networks_as_basic_logic_operators (CC-BY-NC-ND-4.0)

Status: code verified, 32 files readable, 6 matches

[17751] doi:10.3389/fnetp.2025.1539682 [paper, data]

Preictal connectivity dynamics: Exploring inflow and outflow in iEEG networks.

Journal: Frontiers in network physiology

Status: data only, 2 datasets cited

[17752] doi:10.3389/fneur.2025.1552462 [paper, data]

The stress hyperglycemia ratio as a predictor of short- and long-term mortality in patients with acute brain injury: a retrospective cohort study.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[17753] doi:10.3389/fnhum.2025.1571106 [paper, repository]

EEG dynamical features during variable-intensity cycling exercise in Parkinson's disease.

Journal: Frontiers in human neuroscience

Authors' code: zahraalz3523/EEG-dynamical-features- (no license)

Status: code verified, 1 file readable

[17754] doi:10.3389/fonc.2025.1560954 [paper, data]

Single-cell transcriptomics and functional validation revealed PLEKHA5-L as a promoter of growth and migration in brain metastatic melanoma cells.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[17755] doi:10.3389/fphar.2025.1576884 [paper, data]

Optimization of neuron-specific interfering peptides targeting GABA<sub>B</sub> receptor downregulation for proteolytic stability for conferring neuroprotection in a mouse model of cerebral ischemia.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[17756] doi:10.3389/fpsyg.2025.1517876 [paper, repository]

Post-stroke lesion correlates of errors in verbal and spatial production tasks.

Journal: Frontiers in psychology

Authors' code: dorianps/LESYMAP (Apache-2.0)

Status: code verified, 40 files readable, 3 matches

[17757] doi:10.3390/ijms26094198 [paper, repository]

Evaluation of Illumina and Oxford Nanopore Sequencing for the Study of DNA Methylation in Alzheimer's Disease and Frontotemporal Dementia.

Journal: International journal of molecular sciences

Authors' code: FelixKrueger/TrimGalore (GPL-3.0), jts/nanopolish (MIT), nanoporetech/megalodon (GPL-3.0), rrwick/Porechop (GPL-3.0), wdecoster/chopper (MIT), OpenGene/fastplong (MIT)

Status: code verified, 987 files readable, 2 matches

[17758] doi:10.7554/elife.102938 [paper, repository]

Rhythmic circuit function is more robust to changes in synaptic than intrinsic conductances.

Journal: eLife

Authors' code: zackfournier/Fournier_Alonso_Marder_2024 (MIT)

Status: code verified, 1 file readable

Sunday, 27 April 2025 (10 papers)

[17759] doi:10.1002/1878-0261.70039 [paper, data]

Determination of ADP/ATP translocase isoform ratios in malignancy and cellular senescence.

Journal: Molecular oncology

Status: data only, 2 datasets cited

[17760] doi:10.1016/j.nicl.2025.103791 [paper, repository]

Reduced microstructural white matter integrity is associated with the severity of physical symptoms in functional neurological disorder.

Journal: NeuroImage. Clinical

Authors' code: FND-ResearchGroup/DTI_BioGen_NG (GPL-3.0), FND-ResearchGroup/DTI_BioGen_NG).Fig (no license)

Status: code verified, 7 files readable, 6 matches

[17761] doi:10.1038/s41398-025-03380-w [paper]

Predictive modeling of response to repetitive transcranial magnetic stimulation in treatment-resistant depression.

Journal: Translational psychiatry

Status: code on request

[17762] doi:10.1038/s41598-025-98865-5 [paper, repository]

Direct brain recordings reveal implicit encoding of structure in random auditory streams.

Journal: Scientific reports

Authors' code: OSF 4t9c5 (no license)

Status: code found, still to be checked

[17763] doi:10.1038/s41598-025-99685-3 [paper, data]

GRB2 promotes brain metastasis in HER2-positive breast cancer by regulating the Ras/MAPK pathway.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17764] doi:10.1038/s43856-025-00817-7 [paper, repository]

Mitochondrial complex I deficiency occurs in skeletal muscle of a subgroup of individuals with Parkinson's disease.

Journal: Communications medicine

Authors' code: git.app.uib.no/simon.kverneng/complex-i-deficiency-in-skeletal-muscle-of-a-subgroup-of-parkinsons-disease (no license), figshare 28615817 (CC-BY-4.0)

Status: code verified

[17765] doi:10.1155/da/6885509 [paper, repository]

Depicting Coupling Between Cortical Morphology and Functional Networks in Major Depressive Disorder.

Journal: Depression and anxiety

Authors' code: mathworks.com/matlabcentral/fileexchange (no license)

Status: code verified

[17766] doi:10.3390/brainsci15050460 [paper, repository]

MCL-SWT: Mirror Contrastive Learning with Sliding Window Transformer for Subject-Independent EEG Recognition.

Journal: Brain sciences

Authors' code: roniusLuo/MCL_SWT (Apache-2.0)

Status: code verified, 7 files readable, 6 matches

[17767] doi:10.3390/s25092759 [paper, data]

Biplanar Nulling Coil System for OPM-MEG Using Printed Circuit Boards.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[17768] doi:10.3390/s25092762 [paper, repository]

Impact of Temporal Resolution on Autocorrelative Features of Cerebral Physiology from Invasive and Non-Invasive Sensors in Acute Traumatic Neural Injury: Insights from the CAHR-TBI Cohort.

Journal: Sensors (Basel, Switzerland)

Authors' code: python.org (no license)

Status: code verified

Saturday, 26 April 2025 (13 papers)

[17769] doi:10.1002/ijc.35458 [paper, data]

A heterodimer of hemoglobin identifies theranostic targets on brain-metastasizing melanoma cells.

Journal: International journal of cancer

Status: data only, 1 dataset cited

[17770] doi:10.1007/s11357-025-01626-5 [paper, repository]

Predicting the progression of MCI and Alzheimer's disease on structural brain integrity and other features with machine learning.

Journal: GeroScience

Authors' code: OSF ajwct (no license)

Status: code verified, 4 files readable, 2 matches

[17771] doi:10.1038/s41419-025-07678-x [paper, data]

Fusion of glioma-associated mesenchymal stem/stromal cells with glioma cells promotes macrophage recruitment and M2 polarization via m<sup>6</sup>A modification of CSF1.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[17772] doi:10.1038/s41420-025-02490-0 [paper, repository]

Sex and region-specific disruption of autophagy and mitophagy in Alzheimer's disease: linking cellular dysfunction to cognitive decline.

Journal: Cell death discovery

Authors' code: Beheshtiiman2/Mitophagosome-Prediction-with-Machine-Learning (no license)

Status: code verified, 2 files readable

[17773] doi:10.1038/s41467-025-59306-z [paper, repository]

scMultiMap: Cell-type-specific mapping of enhancers and target genes from single-cell multimodal data.

Journal: Nature communications

Authors' code: changsubiostats.github.io/scmultimap (no license), ChangSuBiostats/scMultiMap_analysis (GPL-3.0), Zenodo 14948457 (GPL-3.0), Zenodo 14961850 (GPL-3.0), Zenodo 14948456 (GPL-3.0)

Status: code verified, 134 files readable, 16 matches

[17774] doi:10.1038/s41540-025-00516-y [paper, repository]

The Virtual Parkinsonian patient.

Journal: NPJ systems biology and applications

Authors' code: marangiol/The-Virtual-Parkinsonian-Patient (no license)

Status: code verified, 4 files readable, 3 matches

[17775] doi:10.1038/s42003-025-07934-y [paper, data]

Nanocrystalline cellulose-geniposide complex enhances gut-brain axis modulation for depression treatment.

Journal: Communications biology

Status: data only, 1 dataset cited

[17776] doi:10.1038/s42003-025-08037-4 [paper, repository]

Multimodal identification of the mouse brain using simultaneous Ca<sup>2+</sup> imaging and fMRI.

Journal: Communications biology

Authors' code: bioimagesuiteweb.github.io/webapp (no license), CoBrALab/RABIES (other), nitrc.org/frs (no license)

Status: code verified, 54 files readable, 3 matches

[17777] doi:10.1038/s42003-025-08107-7 [paper, repository]

A neurally constrained computational model of context-dependent fear extinction recall and relapse.

Journal: Communications biology

Authors' code: shreyakr96/CompModelFear (no license)

Status: code verified, 2 files readable, 6 matches

[17778] doi:10.1101/2025.04.22.649344 [paper, repository]

Multi-cohort, multi-sequence harmonisation for cerebrovascular brain age

Journal: bioRxiv (preprint)

Authors' code: ExploreASL/ExploreASL (no license), ExploreASL/cvasl (Apache-2.0), MDijsselhof/CerebrovascularBrainAge (no license)

Status: code verified, 2,066 files readable, 6 matches

[17779] doi:10.1101/2025.04.24.650541 [paper, repository]

Complement receptor <i>C3ar1</i> deficiency does not alter brain structure or functional connectivity across early life development

Journal: bioRxiv (preprint)

Authors' code: hannalemmik (no license)

Status: code verified

[17780] doi:10.1186/s12984-025-01627-7 [paper, data]

Exoskeleton-guided passive movement elicits standardized EEG patterns for generalizable BCIs in stroke rehabilitation.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

[17781] doi:10.1186/s13024-025-00833-0 [paper, data]

TDP-43 seeding activity in the olfactory mucosa of patients with amyotrophic lateral sclerosis.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

Friday, 25 April 2025 (39 papers)

[17782] doi:10.1007/s00259-025-07257-4 [paper, repository]

Tau profiling across Alzheimer's disease staging reveals vulnerability to disease pathophysiology.

Journal: European journal of nuclear medicine and molecular imaging

Authors' code: glebbezgin/surfparc (no license)

Status: empty repository, 1 file readable

[17783] doi:10.1007/s00401-025-02882-7 [paper, data]

Neuronal pSTAT1 hallmarks synaptic pathology in autoimmune encephalitis against intracellular antigens.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[17784] doi:10.1016/j.dib.2025.111574 [paper, repository]

Wearable MEG data recorded during human stepping.

Journal: Data in brief

Authors' code: meaghanspedden/stepping_opm_data (no license)

Status: code verified, 30 files readable

[17785] doi:10.1016/j.jbc.2025.108542 [paper]

Alternative splicing categorizes organ development by stage and reveals unique human splicing variants linked to neuromuscular disorders.

Journal: The Journal of biological chemistry

Status: data only

[17786] doi:10.1016/j.jbc.2025.108544 [paper, data]

N-acetyltransferase 10 promotes glioblastoma malignancy via mRNA stabilization of jumonji and AT-rich interaction domain containing 2.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[17787] doi:10.1016/j.neubiorev.2025.106176 [paper, repository]

The effects of childhood adversity: Two specific neural patterns.

Journal: Neuroscience and biobehavioral reviews

Authors' code: OSF dt3kj (no license)

Status: code verified, 10 files readable

[17788] doi:10.1016/j.xpro.2025.103788 [paper, repository]

Protocol for the quantitative assessment of social and nonsocial reward-seeking in mice using an automated two choice operant assay.

Journal: STAR protocols

Authors' code: Zenodo 14975400 (CC-BY-4.0)

Status: code verified, 309 files readable, 11 matches

[17789] doi:10.1038/s41380-025-03032-x [paper, repository]

Immunological drivers and potential novel drug targets for major psychiatric, neurodevelopmental, and neurodegenerative conditions.

Journal: Molecular psychiatry

Authors' code: chembl/tractability_pipeline_v2 (MIT), jwr-git/pwcoco (GPL-3.0), ChristinaDni/immunological_drivers_psychiatric_mr_pwcoco (no license)

Status: code verified, 453 files readable, 9 matches

[17790] doi:10.1038/s41386-025-02106-2 [paper, repository]

Comparing neuromodulation targets to reduce cigarette craving and withdrawal: a randomized clinical trial.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: HumanBrainZappingatUCLA/TMS4TUD (no license)

Status: code verified, 5 files readable, 4 matches

[17791] doi:10.1038/s41467-025-58861-9 [paper, repository]

Dissociable encoding of evolving beliefs and momentary belief updates in distinct neural decision signals.

Journal: Nature communications

Authors' code: OSF nhqev (no license)

Status: code verified, 2 files readable, 4 matches

[17792] doi:10.1038/s41467-025-58983-0 [paper, repository]

Evaluation of fetal exposure to environmental noise using a computer-generated model.

Journal: Nature communications

Authors' code: optimuslib (no license), Zenodo 15039756 (MIT), optimuslib/optimus (MIT)

Status: code verified, 147 files readable, 6 matches

[17793] doi:10.1038/s41467-025-59177-4 [paper, repository]

Multimodal gradients unify local and global cortical organization.

Journal: Nature communications

Authors' code: MICA-MNI/BrainSpace (BSD-3-Clause), MICA-MNI/micapipe (GPL-3.0), MICA-MNI/Wang_MultimodalGradient (GPL-3.0)

Status: code verified, 148 files readable, 13 matches

[17794] doi:10.1038/s41467-025-59216-0 [paper, data]

Deciphering distinct genetic risk factors for FTLD-TDP pathological subtypes via whole-genome sequencing.

Journal: Nature communications

Status: data only, 9 datasets cited

[17795] doi:10.1038/s41597-025-05036-2 [paper, repository]

TMNRED, A Chinese Language EEG Dataset for Fuzzy Semantic Target Identification in Natural Reading Environments.

Journal: Scientific data

Authors' code: tym182319/TMNRED (no license)

Status: code verified, 17 files readable, 2 matches

[17796] doi:10.1038/s41598-025-87862-3 [paper, repository]

An LLM-based hybrid approach for enhanced automated essay scoring.

Journal: Scientific reports

Authors' code: kaggle.com/c/asap-aes (no license)

Status: dead link

[17797] doi:10.1038/s41598-025-90172-3 [paper, data]

Mindfulness training decreases the habituation response to persistent food stimulation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17798] doi:10.1038/s41598-025-99005-9 [paper, repository]

Neural correlates of altered reward-driven attention in chronic pain and opioid use.

Journal: Scientific reports

Authors' code: kellyhennigan/MID_processing_example (no license)

Status: code verified, 17 files readable, 3 matches

[17799] doi:10.1038/s42003-025-08070-3 [paper, data]

Transcriptomic sex differences in early human fetal brain development.

Journal: Communications biology

Status: data only, 2 datasets cited

[17800] doi:10.1093/braincomms/fcaf148 [paper, data]

Aberrant preparation of hand movement in schizophrenia spectrum disorder: an fMRI study.

Journal: Brain communications

Status: data only, 1 dataset cited

[17801] doi:10.1093/braincomms/fcaf159 [paper, repository]

An artificial intelligence-derived metabolic network predicts psychosis in Alzheimer's disease.

Journal: Brain communications

Authors' code: vonnlab/ADPN (no license)

Status: code verified, 2 files readable

[17802] doi:10.1101/2025.04.25.650708 [paper, repository]

Characterizing semantic compositions in the brain: A model-driven fMRI re-analysis

Journal: bioRxiv (preprint)

Authors' code: OSF 3dnqg (no license)

Status: code verified, 30 files readable, 8 matches

[17803] doi:10.1111/mec.17774 [paper, repository]

Rapid Neural DNA Methylation Responses to Predation Stress in Trinidadian Guppies.

Journal: Molecular ecology

Authors' code: rcristofari/penguin-tools (no license), doi:10.5061/dryad.x0k6djhw6 (no license), janayfox/Guppy-Cue-Exposure (no license)

Status: code verified, 63 files readable, 11 matches

[17804] doi:10.1126/sciadv.adq7342 [paper, repository]

Brain feature maps reveal progressive animal-feature representations in the ventral stream.

Journal: Science advances

Authors' code: vision.caltech.edu (no license)

Status: code verified

[17805] doi:10.1162/imag_a_00546 [paper]

The readiness potential reflects detailed prediction of action outcome.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[17806] doi:10.1162/imag_a_00553 [paper, repository]

Second-order instantaneous causal analysis of spontaneous MEG.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: yongjiezhu/soca (MIT)

Status: code verified, 4 files readable

[17807] doi:10.1186/s12868-025-00948-6 [paper, data]

CHIRP-Seq: FOXP2 transcriptional targets in zebra finch brain include numerous speech and language-related genes.

Journal: BMC neuroscience

Status: data only, 5 datasets cited

[17808] doi:10.1186/s13024-025-00820-5 [paper, repository]

Multi-region brain transcriptomic analysis of amyotrophic lateral sclerosis reveals widespread RNA alterations and substantial cerebellum involvement.

Journal: Molecular neurodegeneration

Authors' code: mq-mnd/grp_williams/als_brain_transcriptome_pub (no license)

Status: code verified, 7 files readable, 28 matches

[17809] doi:10.1186/s13046-025-03393-9 [paper, data]

7aaRGD - a novel SPP1/integrin signaling-blocking peptide reverses immunosuppression and improves anti-PD-1 immunotherapy outcomes in experimental gliomas.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 1 dataset cited

[17810] doi:10.1186/s13195-025-01742-6 [paper, repository]

Differential effects of aging, Alzheimer's pathology, and APOE4 on longitudinal functional connectivity and episodic memory in older adults.

Journal: Alzheimer's research & therapy

Authors' code: villeneuvelab/vlpp (MIT), fislarissa/MTL_PMC_longitudinal_rsFC (MIT), OSF 6syqt (no license)

Status: code verified, 40 files readable, 6 matches

[17811] doi:10.1364/boe.559263 [paper, repository]

Scaling up X-ray holographic nanotomography for neuronal tissue imaging.

Journal: Biomedical optics express

Authors' code: gitlab.esrf.fr/tomotools/nabu (MIT)

Status: code verified, 346 files readable, 1 match

[17812] doi:10.1371/journal.pone.0320299 [paper, data]

Leveraging advanced graph neural networks for the enhanced classification of post anesthesia states to aid surgical procedures.

Journal: PloS one

Status: data only, 1 dataset cited

[17813] doi:10.21037/tcr-2025-377 [paper, data]

Single-cell RNA sequencing for characterizing the immune communication and iron metabolism roles in CD31&lt;sup&gt;+&lt;/sup&gt; glioma cells.

Journal: Translational cancer research

Status: data only, 1 dataset cited

[17814] doi:10.3389/fnagi.2025.1531317 [paper, data]

Bioinformatics-driven exploration of key genes and mechanisms underlying oxidative stress in traumatic brain injury.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[17815] doi:10.3389/fnimg.2025.1558759 [paper, data]

Modeling functional connectivity with learning and memory in a mouse model of Alzheimer's disease.

Journal: Frontiers in neuroimaging

Status: data only, 2 datasets cited

[17816] doi:10.3389/fnins.2025.1547916 [paper, repository]

Demonstrating the need for long inter-stimulus intervals when studying the post-movement beta rebound following a simple button press.

Journal: Frontiers in neuroscience

Authors' code: lyambailey/PMBR_duration (BSD-3-Clause)

Status: code verified, 11 files readable, 8 matches

[17817] doi:10.3389/fphar.2025.1591932 [paper, data]

Prognostic significance and multivariate modeling of COL4A family genes and HMGA2 in glioma.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[17818] doi:10.3390/biomedicines13051040 [paper, data]

Glioblastoma and Blood Microenvironment Predictive Model for Life Expectancy of Patients.

Journal: Biomedicines

Status: data only, 1 dataset cited

[17819] doi:10.3390/molecules30091918 [paper, data]

Synthesis and Evaluation of a Novel Zuranolone Analog with High GABA&lt;sub&gt;A&lt;/sub&gt; Receptor PAM Activity and Excellent Pharmacokinetic Profiles.

Journal: Molecules (Basel, Switzerland)

Status: data only, 1 dataset cited

[17820] doi:10.3390/s25092715 [paper, repository]

Personalizing Seizure Detection for Individual Patients by Optimal Selection of EEG Signals.

Journal: Sensors (Basel, Switzerland)

Authors' code: mivialab/inbit (no license)

Status: code verified, 3 files readable

Thursday, 24 April 2025 (37 papers)

[17821] doi:10.1002/advs.202410209 [paper, data]

Muscle-Derived Small Extracellular Vesicles Mediate Exercise-Induced Cognitive Protection in Chronic Cerebral Hypoperfusion.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[17822] doi:10.1007/s10334-025-01247-1 [paper, repository]

Automated, open-source, vendor-independent quality assurance protocol based on the Pulseq framework.

Journal: Magma (New York, N.Y.)

Authors' code: harmonizedmri/qualityassurance (no license), Zenodo 14778552 (CC-BY-4.0)

Status: code verified, 14 files readable, 5 matches

[17823] doi:10.1007/s11357-025-01658-x [paper, repository]

Normal cerebral oxygen consumption and lactate levels in patients with Alzheimer's disease and Lewy body dementia.

Journal: GeroScience

Authors' code: MarkVestergaard/PCMCalculator (MIT), MarkVestergaard/SBOCalculator (MIT)

Status: code verified, 6 files readable, 5 matches

[17824] doi:10.1007/s12031-025-02354-3 [paper, data]

Causal Association Between Sleep Deprivation and Glioblastoma Risk: Insights from Multi-Omics Analysis.

Journal: Journal of molecular neuroscience : MN

Status: data only, 1 dataset cited

[17825] doi:10.1016/j.celrep.2025.115639 [paper, repository]

Regulation of translation elongation and integrated stress response in heat-shocked neurons.

Journal: Cell reports

Authors' code: proteinatlas.org (no license), pachterlab/kallisto (BSD-2-Clause), pachterlab/sleuth (GPL-3.0), relipmoc/skewer (MIT), alexdobin/STAR (MIT), igvteam/igv (MIT)

Status: code verified, 1,945 files readable, 3 matches

[17826] doi:10.1016/j.ebiom.2025.105723 [paper, data]

Adherence to life's essential 8 is associated with delayed white matter aging.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[17827] doi:10.1016/j.ocarto.2025.100615 [paper, repository]

Prefrontal cortex activation during daily movements and its association with clinical symptoms in knee osteoarthritis.

Journal: Osteoarthritis and cartilage open

Authors' code: sporty1013/eLife2024 (no license)

Status: code verified, 3 files readable

[17828] doi:10.1038/s41418-025-01512-9 [paper, data]

Alternative spliceosomal protein Eftud2 mediated Kif3a exon skipping promotes SHH-subgroup medulloblastoma progression.

Journal: Cell death and differentiation

Status: data only, 1 dataset cited

[17829] doi:10.1038/s41467-025-59101-w [paper, repository]

Human V4 size predicts crowding distance.

Journal: Nature communications

Authors' code: WinawerLab/vistadisp (no license), jankurzawski/crowdingConservation (no license)

Status: code verified, 315 files readable, 11 matches

[17830] doi:10.1038/s41467-025-59108-3 [paper, repository]

MR perfusion source mapping depicts venous territories and reveals perfusion modulation during neural activation.

Journal: Nature communications

Authors' code: mikgroup/Venous-Perfusion-Source-Mapping (no license)

Status: code verified, 3 files readable, 1 match

[17831] doi:10.1038/s41467-025-59248-6 [paper, repository]

Neural representation of cytokines by vagal sensory neurons.

Journal: Nature communications

Authors' code: Eric-H-Chang/calcium-imaging (BSD-3-Clause)

Status: code verified, 4 files readable, 1 match

[17832] doi:10.1038/s41598-025-91635-3 [paper, repository]

Synaptic plasticity-based regularizer for artificial neural networks.

Journal: Scientific reports

Authors' code: qma15jo/Synaptic-plasticity-based-regularizer-for-artificial-neural-networks (no license), Zenodo 14634235 (CC-BY-4.0)

Status: code verified, 10 files readable, 2 matches

[17833] doi:10.1038/s41598-025-95831-z [paper, data]

EEG-based epilepsy detection using CNN-SVM and DNN-SVM with feature dimensionality reduction by PCA.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17834] doi:10.1038/s41598-025-98963-4 [paper, data]

A novel temporal classification prototype network for few-shot bearing fault detection.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17835] doi:10.1038/s41598-025-99247-7 [paper, repository]

Comparing neural responses to cutaneous heat and pressure pain in healthy participants.

Journal: Scientific reports

Authors' code: ChristianBuechel/spm_bids_pipeline (no license)

Status: code verified, 115 files readable, 6 matches

[17836] doi:10.1038/s42003-025-08084-x [paper, repository]

Neural regulation of H3K27me3 during the induction of patterning competency in regenerating Axolotl limb cells.

Journal: Communications biology

Authors' code: doi:10.5061/dryad.tqjq2bw8x.70 (no license), Zenodo 14799066 (MIT)

Status: code verified, 1 file readable, 1 match

[17837] doi:10.1063/5.0251429 [paper, repository]

Cerebellar contribution to multisensory integration: A computational modeling exploration.

Journal: APL bioengineering

Authors' code: alberto-antonietti/CerebNEST (GPL-2.0)

Status: code verified, 30 files readable, 1 match

[17838] doi:10.1073/pnas.2422076122 [paper, repository]

Infrared light stimulates the cochlea through a mechanical displacement detected and amplified by hair cells.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: jazimzadeh/InfraredCochlea (no license)

Status: code verified, 10 files readable, 2 matches

[17839] doi:10.1093/nargab/lqaf042 [paper, repository]

Identifying similar populations across independent single cell studies without data integration.

Journal: NAR genomics and bioinformatics

Authors' code: OscarGVelasco/ClusterFoldSimilarity (MIT), Zenodo 14843698 (CC-BY-4.0), Zenodo 15082356 (CC-BY-4.0)

Status: code verified, 25 files readable, 22 matches

[17840] doi:10.1111/pcn.13830 [paper]

Genome-wide DNA methylation profiles in the raphe nuclei of patients with autism spectrum disorder.

Journal: Psychiatry and clinical neurosciences

Status: data only

[17841] doi:10.1162/imag_a_00552 [paper, repository]

Brain age identification from diffusion MRI synergistically predicts neurodegenerative disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: MASILab/BRAID (CC-BY-NC-4.0)

Status: code verified, 133 files readable, 20 matches

[17842] doi:10.1186/s10020-025-01217-2 [paper, data]

Formononetin ameliorates depression-like behaviors through rebalancing microglia M1/M2 polarization and inhibiting NLRP3 inflammasome: involvement of activating PPARα-mediated autophagy.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 1 dataset cited

[17843] doi:10.1186/s12964-025-02199-8 [paper, data]

Neurodegenerative disease-associated microRNAs acting as signaling molecules modulate CNS neuron structure and viability.

Journal: Cell communication and signaling : CCS

Status: data only, 1 dataset cited

[17844] doi:10.1186/s12974-025-03433-3 [paper, data]

A 3D human iPSC-derived multi-cell type neurosphere system to model cellular responses to chronic amyloidosis.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[17845] doi:10.1371/journal.pcbi.1012910 [paper, repository]

Balancing complexity, performance and plausibility to meta learn plasticity rules in recurrent spiking networks.

Journal: PLoS computational biology

Authors' code: VogelsLab/SpikES (no license)

Status: code verified, 39 files readable, 3 matches

[17846] doi:10.1371/journal.pone.0315810 [paper, data]

Amyloid β induces hormetic-like effects through major stress pathways in a C. elegans model of Alzheimer's Disease.

Journal: PloS one

Status: data only, 1 dataset cited

[17847] doi:10.1523/eneuro.0431-23.2024 [paper, repository]

The Computational Bottleneck of Basal Ganglia Output (and What to Do About it).

Journal: eNeuro

Authors' code: mdhumphries/Basal_Ganglia_Bottleneck_simulations (MIT)

Status: code verified, 17 files readable, 11 matches

[17848] doi:10.21203/rs.3.rs-6306814/v1 [paper, repository]

Spike inference from calcium imaging data acquired with GCaMP8 indicators

Journal: Research Square (preprint)

Authors' code: helmchenlabsoftware/cascade (GPL-3.0), PTRRupprecht/Quantal-analysis-for-spike-inference (GPL-3.0), switch.ch/drive (no license)

Status: code verified, 30 files readable, 8 matches

[17849] doi:10.3389/fneur.2025.1448439 [paper, data]

Thiamine administration and in-hospital mortality in patients with traumatic brain injury: analysis of the MIMIC-IV database.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[17850] doi:10.3389/fnmol.2025.1576941 [paper, data]

Transcriptomic analysis of the TRP gene family in human brain physiopathology.

Journal: Frontiers in molecular neuroscience

Status: data only, 2 datasets cited

[17851] doi:10.3389/fnsys.2025.1548437 [paper, data]

Robustness of brain state identification in synthetic phase-coupled neurodynamics using Hidden Markov Models.

Journal: Frontiers in systems neuroscience

Status: data only, 2 datasets cited

[17852] doi:10.3389/fphar.2025.1519287 [paper, data]

Exploring the diagnostic potential of IL1R1 in depression and its association with lipid metabolism.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[17853] doi:10.3389/frai.2025.1558725 [paper, data]

A novel deep learning technique for multi classify Alzheimer disease: hyperparameter optimization technique.

Journal: Frontiers in artificial intelligence

Status: data only, 2 datasets cited

[17854] doi:10.3390/bioengineering12050449 [paper, data]

Decoding Depression from Different Brain Regions Using Hybrid Machine Learning Methods.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[17855] doi:10.3390/e27050459 [paper, repository]

Thoughtseeds: A Hierarchical and Agentic Framework for Investigating Thought Dynamics in Meditative States.

Journal: Entropy (Basel, Switzerland)

Authors' code: prakash-kavi/thoughtseeds_vipassana (no license)

Status: code verified, 12 files readable, 18 matches

[17856] doi:10.7554/elife.93781 [paper, repository]

Accelerated signal propagation speed in human neocortical dendrites.

Journal: eLife

Authors' code: GasparOlah/Analysis_scripts_for_Accelerated-signal-propagation-speed-in-human-neocortical-dendrites (no license), ssapir/AcceleratedSignalPaper (no license)

Status: code verified, 79 files readable, 2 matches

[17857] doi:10.7554/elife.97614 [paper, repository]

Cerebellar Purkinje cells control posture in larval zebrafish (&lt;i&gt;Danio rerio&lt;/i&gt;).

Journal: eLife

Authors' code: OSF 9x57z (no license)

Status: code verified, 21 files readable, 12 matches

Wednesday, 23 April 2025 (47 papers)

[17858] doi:10.1002/ana.27240 [paper, repository]

Association Between Vascular NOTCH3 Aggregation and Disease Severity in a CADASIL Cohort - Implications for NOTCH3 Variant-Specific Disease Prediction.

Journal: Annals of neurology

Authors' code: miac-research/psmd (BSD-3-Clause)

Status: code verified, 3 files readable

[17859] doi:10.1007/s00018-025-05687-9 [paper, data]

Assessing the diagnostic, prognostic, and therapeutic potential of the somatostatin/cortistatin system in glioblastoma.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[17860] doi:10.1007/s11030-025-11196-5 [paper, data]

Titania: an integrated tool for in silico molecular property prediction and NAM-based modeling.

Journal: Molecular diversity

Status: data only, 19 datasets cited

[17861] doi:10.1007/s11682-025-01006-9 [paper, data]

Cerebellar and subcortical interplay in cognitive dysmetria: functional network signatures associate with symptom and trait assessments across schizophrenia, bipolar II, and ADHD patients.

Journal: Brain imaging and behavior

Status: data only, 1 dataset cited

[17862] doi:10.1016/j.bas.2025.104261 [paper, repository]

Fusion of 3D photorealistic lateral-to-medial brain white matter dissection and diffusion tensor imaging for dynamic visualization of key fiber tracts.

Journal: Brain & spine

Authors' code: wayalan/HCPex (GPL-3.0)

Status: code verified, 4 files readable

[17863] doi:10.1016/j.cell.2025.03.045 [paper, data]

Transcriptional regulation by PHGDH drives amyloid pathology in Alzheimer's disease.

Journal: Cell

Status: code on request, 1 dataset cited

[17864] doi:10.1016/j.cub.2025.03.039 [paper, data]

The neuropeptide FLP-11 induces and self-inhibits sleep through the receptor DMSR-1 in Caenorhabiditis elegans.

Journal: Current biology : CB

Status: data only, 1 dataset cited

[17865] doi:10.1016/j.neuroimage.2025.121238 [paper, repository]

Characterizing the effects of age, puberty, and sex on variability in resting-state functional connectivity in late childhood and early adolescence.

Journal: NeuroImage

Authors' code: DCAN-Labs/abcd-hcp-pipeline (BSD-3-Clause)

Status: code verified, 8 files readable, 2 matches

[17866] doi:10.1016/j.nicl.2025.103792 [paper]

Regional cerebellar atrophy related to disability and cognitive progression in multiple sclerosis.

Journal: NeuroImage. Clinical

Status: code on request

[17867] doi:10.1038/s41380-025-03030-z [paper, repository]

LRRK2 mediates haloperidol-induced changes in indirect pathway striatal projection neurons.

Journal: Molecular psychiatry

Authors' code: Zenodo 15092155 (CC-BY-4.0)

Status: code verified, 1 file readable

[17868] doi:10.1038/s41467-025-58821-3 [paper, data]

Nkx2.7 is a conserved regulator of craniofacial development.

Journal: Nature communications

Status: data only, 1 dataset cited

[17869] doi:10.1038/s41467-025-58896-y [paper, repository]

Innate network mechanisms of temporal pole for semantic cognition in neonatal and adult twin studies.

Journal: Nature communications

Authors' code: ziliang-zhu/tp_neonatal_twins_code (no license), neurosynth/neurosynth (MIT), Zenodo 15074861 (CC-BY-4.0), zzlxy/tp_neonatal_twins_code (no license)

Status: code verified, 62 files readable, 12 matches

[17870] doi:10.1038/s41467-025-59140-3 [paper, repository]

Early versus late noise differentially enhances or degrades context-dependent choice.

Journal: Nature communications

Authors' code: Zenodo 14940477 (GPL-3.0), bsbbs/shen2025natcomm (GPL-3.0)

Status: code verified, 300 files readable, 7 matches

[17871] doi:10.1038/s41531-025-00916-1 [paper, repository]

Midbrain and pallidal iron changes identify patients with REM sleep behaviour disorder and Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: AlanKuurstra/qsm_sstv (no license)

Status: code verified, 4 files readable

[17872] doi:10.1038/s41531-025-00942-z [paper]

Clinical and brain volumetric correlates of decreased DTI-ALPS, suggestive of local glymphatic dysfunction, in iRBD.

Journal: NPJ Parkinson's disease

Status: code on request

[17873] doi:10.1038/s41586-025-08875-6 [paper, repository]

A distributed coding logic for thermosensation and inflammatory pain.

Journal: Nature

Authors' code: Zenodo 14907827 (CC-BY-4.0)

Status: code verified, 2 files readable, 2 matches

[17874] doi:10.1038/s41597-025-04379-0 [paper, data]

A Multi-Scale Neuron Morphometry Dataset from Peta-voxel Mouse Whole-Brain Images.

Journal: Scientific data

Status: data only, 1 dataset cited

[17875] doi:10.1038/s41597-025-04803-5 [paper, repository]

Emo-FilM: A multimodal dataset for affective neuroscience using naturalistic stimuli.

Journal: Scientific data

Authors' code: EllieMo/Emo-FilM (Apache-2.0), fmrib.ox.ac.uk/fsl (no license), Zenodo 8125817 (other-open), Zenodo 8125784 (Apache-2.0), physiopy/phys2denoise (Apache-2.0), physiopy/peakdet (Apache-2.0)

Status: code verified, 137 files readable, 7 matches

[17876] doi:10.1038/s41598-025-96223-z [paper, repository]

Heterogeneous quantization regularizes spiking neural network activity.

Journal: Scientific reports

Authors' code: cplab/sapicore (no license), cplab/sapinet_regularization (no license)

Status: code verified, 89 files readable, 15 matches

[17877] doi:10.1038/s41598-025-97854-y [paper, repository]

Amplitude entropy captures chimera resembling behavior in the altered brain dynamics during seizures.

Journal: Scientific reports

Authors' code: cobragroup/amplitude-chimera-epilepsy (MIT)

Status: code verified, 30 files readable, 7 matches

[17878] doi:10.1038/s41746-025-01635-w [paper, repository]

Predictive modeling of hemodynamics during viscerosensory neurostimulation via neural computation mechanism in the brainstem.

Journal: NPJ digital medicine

Authors' code: Ez0-9606/NTS_Neuro-hemodynamic (no license), Ez0-9606/NTS_Neuro-haemodynamic (no license)

Status: code verified, 113 files readable, 18 matches

[17879] doi:10.1073/pnas.2423374122 [paper, repository]

Distinct oxytocin signaling pathways synergistically mediate rescue-like behavior in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: FR-ZH/PhotometryAnalyses (no license)

Status: code verified, 3 files readable

[17880] doi:10.1080/19768354.2025.2481979 [paper, data]

Asxl1 loss in mice leads to microcephaly by regulating neural stem cell survival.

Journal: Animal cells and systems

Status: data only, 1 dataset cited

[17881] doi:10.1084/jem.20232357 [paper, repository]

Microglia and CD8+ T cell activation precede neuronal loss in a murine model of spastic paraplegia 15.

Journal: The Journal of experimental medicine

Authors' code: gitlab.dzne.de/ag-beyer/frolovhuang_spg15 (BSD-3-Clause), gitlab.dzne.de/ag-beyer/scrnaseq.analysis (BSD-3-Clause), hub.docker.com/r/alefrol94 (no license), hub.docker.com/r/wollmilchsau (no license), Zenodo 15033125 (BSD-3-Clause), Zenodo 15033126 (BSD-3-Clause)

Status: code verified, 168 files readable, 27 matches

[17882] doi:10.1098/rsos.241086 [paper, repository]

Categories of important edges in dynamics on graphs.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7740289 (no license)

Status: code found, still to be checked

[17883] doi:10.1101/2025.04.17.648358 [paper, repository]

Brain network dynamics determine tau presence while regional vulnerability governs tau load in Alzheimer’s disease

Journal: bioRxiv (preprint)

Authors' code: netneurolab/hansenmanynetworks (no license), DeMONLab-BioFINDER/Xiao_Tau_simulation_SIR (no license), ucl-pond (no license)

Status: code verified, 15 files readable, 4 matches

[17884] doi:10.1101/2025.04.18.649496 [paper]

Attention induced perceptual traveling waves in binocular rivalry

Journal: bioRxiv (preprint)

Status: code on request

[17885] doi:10.1126/sciadv.adq6077 [paper, data]

Loss of intracellular ATP affects axoplasmic viscosity and pathological protein aggregation in mammalian neurons.

Journal: Science advances

Status: data only, 1 dataset cited

[17886] doi:10.1126/sciadv.adt6207 [paper, repository]

Reducing racial ingroup biases in empathy and altruistic decision-making by shifting racial identification.

Journal: Science advances

Authors' code: doi:10.5061/dryad.jwstqjqmv (no license)

Status: code verified

[17887] doi:10.1126/sciadv.adu5251 [paper, repository]

Neural representations of noncentral events during narrative encoding predict subsequent story ending originality.

Journal: Science advances

Authors' code: fxsjy/jieba (MIT), semantics2psycho/Semantic-Toolbox (no license), Zenodo 15004055 (CC-BY-4.0)

Status: code verified, 83 files readable

[17888] doi:10.1126/sciadv.adu6991 [paper, repository]

Input-driven dynamics for robust memory retrieval in Hopfield networks.

Journal: Science advances

Authors' code: Zenodo 14873595 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

[17889] doi:10.1177/11795735251336302 [paper, data]

Multiomics from Alzheimer's Brains and Mesenchymal Stem Cell-Derived Extracellular Vesicles Identifies Therapeutic Potential of Specific Subpopulations to Target Mitochondrial Proteostasis.

Journal: Journal of central nervous system disease

Status: data only, 1 dataset cited

[17890] doi:10.1186/s12974-025-03444-0 [paper, repository]

Single-cell sequencing reveals intracranial microvasculature-derived CXCL12 promotes CD8&lt;sup&gt;+&lt;/sup&gt; T-cell infiltration and blood-brain barrier dysfunction after subarachnoid hemorrhage in mice.

Journal: Journal of neuroinflammation

Authors' code: sqjin/CellChat (GPL-3.0)

Status: code verified, 19 files readable, 4 matches

[17891] doi:10.1186/s13024-025-00844-x [paper, data]

Inhibition of soluble epoxide hydrolase confers neuroprotection and restores microglial homeostasis in a tauopathy mouse model.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[17892] doi:10.1371/journal.pbio.3003140 [paper, data]

The dorsal and ventral hippocampus contribute differentially to spatial working memory and spatial coding in the prefrontal cortex.

Journal: PLoS biology

Status: data only, 2 datasets cited

[17893] doi:10.1371/journal.pbio.3003150 [paper, data]

Reactivation of previous decisions repulsively biases sensory encoding but attractively biases decision-making.

Journal: PLoS biology

Status: data only, 1 dataset cited

[17894] doi:10.1371/journal.pcbi.1012036 [paper, repository]

Cell-type-specific firing patterns in a V1 cortical column model depend on feedforward and feedback-driven states.

Journal: PLoS computational biology

Authors' code: giuliamoreni95/cortical_column_model_perturbations (no license)

Status: code verified, 26 files readable

[17895] doi:10.1523/eneuro.0097-25.2025 [paper, repository]

Recurrent Interneuron Connectivity Does Not Support Synchrony in a Biophysical Dentate Gyrus Model.

Journal: eNeuro

Authors' code: danielmk/pydentate (MIT)

Status: code verified, 226 files readable, 9 matches

[17896] doi:10.1523/jneurosci.0802-24.2025 [paper, repository]

Association of Bidirectional Network Cores in the Brain with Perceptual Awareness and Cognition.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: NeuroanatomyAndConnectivity/gradient_analysis (MIT), ThomasYeoLab/CBIG (MIT), yetianmed/subcortex (MIT), JunKitazono/BidirectionallyConnectedCores (no license), gustavodeco/nhb-ndte (no license), bastibe/Violinplot-Matlab (BSD-3-Clause)

Status: code verified, 2,092 files readable, 5 matches

[17897] doi:10.1523/jneurosci.1119-24.2025 [paper, data]

Toward a Mechanistic Understanding of Reading Difficulties: Deviant Audiovisual Learning Dynamics and Network Connectivity in Children with Poor Reading Skills.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[17898] doi:10.1523/jneurosci.1693-24.2025 [paper, repository]

Methylphenidate Promotes a Frontoparietal-Dominant Brain State Improving Cognitive Performance: A Randomized Trial.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: WizardYan/MP_PET_fMRI (CC-BY-4.0)

Status: code verified, 214 files readable, 6 matches

[17899] doi:10.3390/bioengineering12050443 [paper, repository]

Non-Invasive Localization of Epileptogenic Zone in Drug-Resistant Epilepsy Based on Time-Frequency Analysis and VGG Convolutional Neural Network.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: wyl1994/data-and-code-for-our-paper-Noninvasive-localization-of-epileptogenic-zone...- (no license)

Status: code verified, 1 file readable

[17900] doi:10.3390/biom15050617 [paper, data]

The Role of &lt;i&gt;N&lt;/i&gt;6-Methyladenosine (m6A) RNA Modification in the Pathogenesis of Parkinson's Disease.

Journal: Biomolecules

Status: data only, 1 dataset cited

[17901] doi:10.3390/cosmetics12030086 [paper, data]

Kv1.3 Ion Channels Mediate Electrical Stimulation-Induced Collagen Expression in Human Dermal Fibroblasts.

Journal: Cosmetics

Status: code on request, 1 dataset cited

[17902] doi:10.3390/genes16050473 [paper, repository]

Enhancing Prognostic Signatures in Glioblastoma with Feature Selection and Regularised Cox Regression.

Journal: Genes

Authors' code: sysbiomed/GBMsurvival (no license)

Status: code verified, 15 files readable, 9 matches

[17903] doi:10.7554/elife.100737 [paper, data]

Simply crushed zizyphi spinosi semen prevents neurodegenerative diseases and reverses age-related cognitive decline in mice.

Journal: eLife

Status: data only, 1 dataset cited

[17904] doi:10.7554/elife.102424 [paper, repository]

Elevated pyramidal cell firing orchestrates arteriolar vasoconstriction through COX-2-derived prostaglandin E2 signaling.

Journal: eLife

Authors' code: supp:PMC12017770/elife-102424-code1.zip (no license)

Status: code verified, 2 files readable

Tuesday, 22 April 2025 (38 papers, 16 on this page)

[17905] doi:10.1002/mds.30214 [paper, repository]

Molecular-Informed Network Analysis Unveils Fatigue-Related Functional Connectivity in Parkinson's Disease.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: ottaviadipasquale/react-fmri (MIT)

Status: code verified, 5 files readable

[17906] doi:10.1016/j.isci.2025.112510 [paper, data]

Multiomics reveal biomolecular shifts and ER stress in sleep-restricted women affecting NSC functions.

Journal: iScience

Status: code on request, 1 dataset cited

[17907] doi:10.1016/j.isci.2025.112513 [paper]

In-vivo properties and functional subtypes of gonadotropin-releasing hormone neurons.

Journal: iScience

Status: code on request

[17908] doi:10.1016/j.nbd.2025.106928 [paper, repository]

Oligodendrocyte myelin glycoprotein impairs dendritic arbors via schizophrenia risk gene Trio.

Journal: Neurobiology of disease

Authors' code: shelbyruiz23/OMGp_phosphoproteomics (no license)

Status: code verified, 4 files readable, 4 matches

[17909] doi:10.1016/j.neurot.2025.e00598 [paper, data]

Maternal oxytocin administration mitigates nociceptive, social, and epigenetic impairments in adolescent offspring exposed to perinatal trauma.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[17910] doi:10.1016/j.patter.2025.101237 [paper, repository]

Evaluation of unsupervised learning algorithms for the classification of behavior from pose estimation data.

Journal: Patterns (New York, N.Y.)

Authors' code: Zenodo 14382973 (CC-BY-4.0)

Status: code verified

[17911] doi:10.1021/acs.jcim.5c00296 [paper, repository]

Modeling Chemical Reaction Networks Using Neural Ordinary Differential Equations.

Journal: Journal of chemical information and modeling

Authors' code: KachmanLab/ChemicalReactionNetworks (MIT)

Status: code verified, 59 files readable, 7 matches

[17912] doi:10.1038/s41386-025-02105-3 [paper, repository]

Mapping brain-wide activity networks: brainways as a tool for neurobiological discovery.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: bkntr/brainways (GPL-3.0)

Status: code verified, 171 files readable, 1 match

[17913] doi:10.1038/s41419-025-07524-0 [paper, repository]

Opposing roles for GSK3β and ERK1-dependent phosphorylation of huntingtin during neuronal dysfunction and cell death in Huntington's disease.

Journal: Cell death & disease

Authors' code: shxm725/IonStarstat (no license)

Status: code verified, 3 files readable, 1 match

[17914] doi:10.1038/s41531-025-00931-2 [paper]

Patterns of cerebellar cortex hypermetabolism on motor and cognitive functions in PD.

Journal: NPJ Parkinson's disease

Status: code on request

[17915] doi:10.1038/s41598-025-98238-y [paper, data]

Executive functions and associated brain volumetry in children with persistent stunting and catch-up growth.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17916] doi:10.1038/s42003-025-08026-7 [paper, data]

GABA and astrocytic cholesterol determine the lipid environment of GABA&lt;sub&gt;A&lt;/sub&gt;R in cultured cortical neurons.

Journal: Communications biology

Status: data only, 2 datasets cited

[17917] doi:10.1038/s42003-025-08081-0 [paper, data]

Evidence for a push-pull interaction between superior colliculi in monocular dynamic vision mode.

Journal: Communications biology

Status: code on request, 1 dataset cited

[17918] doi:10.1038/s42255-025-01280-3 [paper, data]

Rapid modulation of gut microbiota composition by hypothalamic circuits in mice.

Journal: Nature metabolism

Status: data only, 2 datasets cited

[17919] doi:10.1038/s44172-025-00414-5 [paper, data]

A brain-inspired algorithm improves "cocktail party" listening for individuals with hearing loss.

Journal: Communications engineering

Status: data only, 1 dataset cited

[17920] doi:10.1038/s44318-025-00436-x [paper]

Autophagosomes anchor an AKAP11-dependent regulatory checkpoint that shapes neuronal PKA signaling.

Journal: The EMBO journal

Status: data only

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