Every paper, by date: page 79

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 79 of 200: 5 May 2025 to 29 April 2025.

Monday, 5 May 2025 (33 papers, 17 on this page)

[17473] doi:10.1038/s42003-025-08053-4 [paper, repository]

Fronto-occipital dyscommunication associates with brain hierarchy in schizophrenia.

Journal: Communications biology

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), neurosynth/neurosynth (MIT), OSF 48tfa (no license), artipago (no license), haonanpei-study/fronto-occipital-dyscommunication-associates-with-brain-hierarchy-in-schizophrenia (no license)

Status: code verified, 92 files readable, 4 matches

[17474] doi:10.1038/s42003-025-08145-1 [paper, repository]

Object representations drive emotion schemas across a large and diverse set of daily-life scenes.

Journal: Communications biology

Authors' code: OSF eks8u (no license)

Status: code verified, 6 files readable, 1 match

[17475] doi:10.1073/pnas.2413789122 [paper, repository]

Cortical signatures linked to behavior quantitatively track arousal levels.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Calderonlab/arousal_units (no license)

Status: code verified, 64 files readable, 13 matches

[17476] doi:10.1073/pnas.2503569122 [paper, data]

Early development of navigationally relevant location information in the retrosplenial complex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[17477] doi:10.1093/braincomms/fcaf172 [paper, repository]

Differential modulation of neural oscillations in perception-action links in Tourette syndrome.

Journal: Brain communications

Authors' code: OSF yx4cw (no license)

Status: code verified, 13 files readable, 3 matches

[17478] doi:10.1101/2025.05.03.652017 [paper, repository]

A single cell ATAC-seq atlas uncovers dynamic changes in chromatin accessibility during cell fate specification at the neural plate border

Journal: bioRxiv (preprint)

Authors' code: Streit-lab/scACE (no license), hub.docker.com/u/alexthiery (no license)

Status: code verified, 59 files readable, 12 matches

[17479] doi:10.1101/2025.05.04.649695 [paper, repository]

Development of Auditory and Spontaneous Movement Responses to Music over the First Postnatal Year

Journal: bioRxiv (preprint)

Authors' code: tnguyen1992/tinydancer (CC0-1.0)

Status: code verified, 65 files readable, 8 matches

[17480] doi:10.1162/imag_a_00570 [paper, repository]

Transcallosal generation of phase-aligned beta bursts underlies TMS-induced interhemispheric inhibition.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF d5m74 (no license)

Status: code verified, 3 files readable, 5 matches

[17481] doi:10.1186/s10020-025-01226-1 [paper, data]

Bacteriophage-derived endolysins restore antibiotic susceptibility in β-lactam- and macrolide-resistant Streptococcus pneumoniae infections.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 1 dataset cited

[17482] doi:10.1186/s12880-025-01687-0 [paper, repository]

The impact of cerebral vessels morphological alteration and white matter hyperintensities burden on the one-year risk of ischemic stroke recurrence.

Journal: BMC medical imaging

Authors' code: phi-max/skeleton3d-matlab (BSD-2-Clause), MIC-DKFZ/nnUNet (Apache-2.0)

Status: code verified, 248 files readable, 2 matches

[17483] doi:10.1186/s13321-025-01007-2 [paper, repository]

Prediction of blood-brain barrier and Caco-2 permeability through the Enalos Cloud Platform: combining contrastive learning and atom-attention message passing neural networks.

Journal: Journal of cheminformatics

Authors' code: NovaMechanicsOpenSource/Atom-Attention-MPNN (no license)

Status: code verified, 35 files readable, 15 matches

[17484] doi:10.1371/journal.pone.0322795 [paper, repository]

The measurement of self-regulation in the Adolescent Brain Cognitive Development (ABCD) Study.

Journal: PloS one

Authors' code: OSF nzjf7 (no license)

Status: code verified, 2 files readable, 5 matches

[17485] doi:10.1523/eneuro.0583-24.2025 [paper, repository]

Motor Assisted Commutator to Harness Electronics in Tethered Experiments.

Journal: eNeuro

Authors' code: UNC-optics/MACHETE (MIT)

Status: code verified, 2 files readable

[17486] doi:10.21769/bioprotoc.5300 [paper, repository]

Reconstruction of Single-Neuron Projectomes in Mice.

Journal: Bio-protocol

Authors' code: Zenodo 5981001 (CC-BY-4.0), BiyuRen/Single_Neuron_Reconstruction (no license)

Status: code verified, 45 files readable, 2 matches

[17487] doi:10.3390/jcm14093185 [paper]

Protocol for a Randomized Controlled Trial to Determine if Biomarkers Predict Response to a Pediatric Chronic Pain Symptom Management Program.

Journal: Journal of clinical medicine

Status: code on request

[17488] doi:10.3758/s13414-025-03075-w [paper, data]

Cueing distractors is effective when the incentive to suppress is high.

Journal: Attention, perception & psychophysics

Status: code on request, 1 dataset cited

[17489] doi: [paper, repository]

Brain Representation in Conscious and Unconscious Vision

Journal: Journal of cognition

Authors' code: nmningmei/unconfeats (MIT)

Status: code verified, 112 files readable, 11 matches

Sunday, 4 May 2025 (4 papers)

[17490] doi:10.1007/s00221-025-07091-y [paper, repository]

Predictable transcranial magnetic stimulation suppresses corticospinal excitability: a TMS experiment.

Journal: Experimental brain research

Authors' code: gapnapats.github.io/predictabletmsstimulation (no license)

Status: code verified

[17491] doi:10.1080/15548627.2025.2493999 [paper, repository]

AlphaFold2 SLiM screen for LC3-LIR interactions in autophagy.

Journal: Autophagy

Authors' code: bio-phys/af2_lir_screen (GPL-3.0)

Status: code verified, 11 files readable, 8 matches

[17492] doi:10.1101/2025.05.02.651931 [paper, data]

Adaptations in common synaptic inputs to spinal motor neurons during grasping versus a less functional hand task

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[17493] doi:10.1177/13872877251337944 [paper, repository]

Modeling Alzheimer's disease: Bayesian copula graphical model from demographic, cognitive, and neuroimaging data.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: lucasvogels33/Modeling-AD-Bayesian-GCGM-from-Demographic-Cognitive-and-Neuroimaging-Data (no license)

Status: code verified, 5 files readable, 7 matches

Saturday, 3 May 2025 (8 papers)

[17494] doi:10.1007/s10238-025-01677-0 [paper]

Integrative analysis of glioblastoma multiforme: the power of non-coding RNAs and hub genes in cancer research.

Journal: Clinical and experimental medicine

Status: data only

[17495] doi:10.1038/s41467-025-59153-y [paper, repository]

Hippocampal-entorhinal cognitive maps and cortical motor system represent action plans and their outcomes.

Journal: Nature communications

Authors' code: OSF uz83d (no license)

Status: code verified, 2 files readable, 2 matches

[17496] doi:10.1038/s42003-025-08112-w [paper, data]

Structure of the complex of C1q-like 3 protein with adhesion-GPCR BAI3.

Journal: Communications biology

Status: data only, 1 dataset cited

[17497] doi:10.1101/2025.05.02.25326852 [paper, repository]

Genetic Heterogeneity and Homogeneity Among Orofacial Cleft Subtypes: Genome-Wide Association Studies in the Cleft Collective

Journal: medRxiv (preprint)

Authors' code: MRCIEU/ieugwasr (other)

Status: code verified, 24 files readable

[17498] doi:10.1111/epi.18431 [paper, repository]

Automated detection of interictal epileptiform discharges with few electroencephalographic channels.

Journal: Epilepsia

Authors' code: bdsp-core/cyclops (CC-BY-NC-4.0)

Status: code verified, 19 files readable, 1 match

[17499] doi:10.1186/s13024-025-00840-1 [paper, repository]

Alzheimer's disease protective allele of Clusterin modulates neuronal excitability through lipid-droplet-mediated neuron-glia communication.

Journal: Molecular neurodegeneration

Authors' code: Zenodo 11568090 (CC-BY-4.0)

Status: code verified, 11 files readable, 4 matches

[17500] doi:10.1186/s40478-025-02007-x [paper, data]

Identification and characterization of tertiary lymphoid structures in brain metastases.

Journal: Acta neuropathologica communications

Status: data only, 5 datasets cited

[17501] doi:10.3390/brainsci15050483 [paper, data]

Right Parietal rTMS Induces Bidirectional Effects of Selective Attention upon Object Integration.

Journal: Brain sciences

Status: data only, 1 dataset cited

Friday, 2 May 2025 (32 papers)

[17502] doi:10.1016/j.cnp.2025.04.002 [paper, repository]

Cortical response to proprioceptive stimulation in primary orthostatic tremor - a magnetoencephalography study.

Journal: Clinical neurophysiology practice

Authors' code: JoWld/proprioception_OT (no license)

Status: code verified, 14 files readable, 4 matches

[17503] doi:10.1016/j.immuni.2025.04.007 [paper, repository]

Inflammasome signaling in astrocytes modulates hippocampal plasticity.

Journal: Immunity

Authors' code: Zenodo 15035203 (CC-BY-4.0), LukensLab/Casp1Aldh1l1-scRNAseq (no license)

Status: code verified, 10 files readable, 5 matches

[17504] doi:10.1016/j.isci.2025.112564 [paper, data]

Inhibition of GAPDH aggregation as a potential treatment for acute ischemic stroke.

Journal: iScience

Status: code on request, 3 datasets cited

[17505] doi:10.1016/j.isci.2025.112569 [paper, data]

Impact of ATF6 deletion on the embryonic brain development.

Journal: iScience

Status: code on request, 1 dataset cited

[17506] doi:10.1038/s41467-025-59302-3 [paper, repository]

Divergent neural circuits for proprioceptive and exteroceptive sensing of the Drosophila leg.

Journal: Nature communications

Authors' code: sagrawal/Lee_2024 (no license), seung-lab/CAVEclient (MIT), htem/FANC_auto_recon (GPL-3.0)

Status: code verified, 118 files readable, 6 matches

[17507] doi:10.1038/s41467-025-59352-7 [paper, repository]

Sex-specific hypothalamic neural projection activity drives caregiving in mice.

Journal: Nature communications

Authors' code: anita-autry/Carta-MPOAGal-PeFA (no license)

Status: code verified, 4 files readable, 2 matches

[17508] doi:10.1038/s41587-025-02659-z [paper, data]

A tissue-specific atlas of protein-protein associations enables prioritization of candidate disease genes.

Journal: Nature biotechnology

Status: data only, 1 dataset cited

[17509] doi:10.1038/s41598-025-00355-1 [paper, repository]

Hypoxic preconditioning modulates BDNF signaling to alleviate depression-like behaviors in mice and its whole transcriptome sequencing analysis.

Journal: Scientific reports

Authors' code: tanghaibao/GOatools (BSD-2-Clause)

Status: code verified, 136 files readable, 3 matches

[17510] doi:10.1038/s41598-025-98264-w [paper, data]

Multichannel convolutional transformer for detecting mental disorders using electroancephalogrpahy records.

Journal: Scientific reports

Status: data only, 2 datasets cited

[17511] doi:10.1038/s41598-025-98389-y [paper, repository]

Retraining and evaluation of machine learning and deep learning models for seizure classification from EEG data.

Journal: Scientific reports

Authors' code: self-software-evolution-lab/ai-epilepsy (no license)

Status: code verified, 333 files readable, 8 matches

[17512] doi:10.1038/s41598-025-99113-6 [paper, data]

Brain connectomics markers for response prediction to transcranial magnetic stimulation in cocaine use disorder.

Journal: Scientific reports

Status: data only, 2 datasets cited

[17513] doi:10.1088/1361-6579/adce52 [paper, repository]

Visualizing functional network connectivity differences using an explainable machine-learning method.

Journal: Physiological measurement

Authors' code: slundberg/shap (MIT), trendscenter.org/software (no license)

Status: code verified, 66 files readable

[17514] doi:10.1097/yct.0000000000001154 [paper, repository]

Cranial Sutures Alter Computational Models of Transcranial Electrical Stimulation.

Journal: The journal of ECT

Authors' code: andypotatohy/roast (GPL-3.0)

Status: code verified, 2,000 files readable, 2 matches

[17515] doi:10.1101/2025.04.29.651200 [paper, repository]

Glycan Atlassing: Nanoscale analysis of glycocalyx architecture enables functional tracing of cell state

Journal: bioRxiv (preprint)

Authors' code: moecklgroup (no license)

Status: code verified

[17516] doi:10.1101/2025.04.30.651428 [paper, repository]

Perceptual glimpses are locally accumulated and globally maintained at distinct processing levels

Journal: bioRxiv (preprint)

Authors' code: OSF z7dp2 (no license)

Status: empty repository

[17517] doi:10.1126/sciadv.adt6105 [paper, repository]

Characterizing the expression profile of 3R tau pathology in Pick's disease.

Journal: Science advances

Authors' code: ORossLab/Picks_Bulk_RNASeq (no license)

Status: code verified, 1 file readable

[17518] doi:10.1162/imag_a_00558 [paper, repository]

Multi-coil TMS for preclinical applications in ultra-high-field MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 2qmzj (no license), vhosouza/mtms-mri-manuscript (CC-BY-4.0)

Status: code verified, 16 files readable, 3 matches

[17519] doi:10.1162/imag_a_00562 [paper, repository]

Estimation of oxygen extraction fraction based on hemodynamic measurements using DSC-MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: gitlab.utu.fi/vesoik/tpcclib (GPL-3.0)

Status: code verified, 1,277 files readable, 4 matches

[17520] doi:10.1162/imag_a_00563 [paper, data]

Cost of maintaining attentional templates for multiple colors revealed by EEG decoding.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[17521] doi:10.1162/imag_a_00566 [paper, repository]

Characterising time-on-task effects on oscillatory and aperiodic EEG components and their co-variation with visual task performance.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: MartinaKopcanova/Kopcanova-et-al-2024-EEG-time-on-task (no license)

Status: code verified, 8 files readable, 8 matches

[17522] doi:10.1162/imag_a_00567 [paper, repository]

Delineation of the trigeminal-lateral parabrachial-central amygdala tract in humans.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: b2kaya/cnv-lpbn-cea (no license)

Status: code verified, 8 files readable, 2 matches

[17523] doi:10.1186/s10020-025-01196-4 [paper, data]

Peripheral tissue BDNF expression is affected by promoter IV defect and enriched environments in mice: negative hippocampus-intestine and positive thymus-serum-muscle correlations.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 1 dataset cited

[17524] doi:10.1186/s12916-025-04099-7 [paper, repository]

Normative structural connectome constrains spreading transient brain activity in generalized epilepsy.

Journal: BMC medicine

Authors' code: ThomasYeoLab/CBIG (MIT), Xinyuan-Liang/SC-shapes-the-maturation-of-cortical-morphology (GPL-2.0), frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 2,017 files readable, 2 matches

[17525] doi:10.1186/s40478-025-01995-0 [paper, data]

Activated alpha 9 integrin expression enables sensory pathway reconstruction after spinal cord injury.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[17526] doi:10.1242/jeb.249342 [paper, repository]

Encoding of antennal position and velocity by the Johnston's organ in hawkmoths.

Journal: The Journal of experimental biology

Authors' code: chinmayeelm/Intracellular-recording-Matlab-app (no license)

Status: empty repository, 1 file readable

[17527] doi:10.1371/journal.pone.0322652 [paper, repository]

Menstrual cycle and perceived stress predict performance on the mnemonic similarity task.

Journal: PloS one

Authors' code: OSF bt6e8 (no license)

Status: code verified, 1 file readable, 1 match

[17528] doi:10.18332/tid/203507 [paper, data]

Cigarette smoke modulates methylation levels of LEF1-AS1 and impedes its expression: An experimental study.

Journal: Tobacco induced diseases

Status: data only, 1 dataset cited

[17529] doi:10.3389/fcimb.2025.1580958 [paper, data]

Japanese encephalitis virus-associated human microglia induce cell death of human microvascular endothelial cells in receptor-independent infection.

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

[17530] doi:10.3389/fnins.2025.1526963 [paper, data]

Personalized preictal EEG pattern characterization: do timing and localization matter?

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[17531] doi:10.3390/biomimetics10050286 [paper, repository]

A Bio-Inspired Learning Dendritic Motion Detection Framework with Direction-Selective Horizontal Cells.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: RurIIIIIkitesumimasen/HCdM (no license)

Status: code verified

[17532] doi:10.7554/elife.100918 [paper, repository]

Temporal dynamics analysis reveals that concurrent working memory load eliminates the Stroop effect through disrupting stimulus-response mapping.

Journal: eLife

Authors' code: OSF 89bpz (no license)

Status: code verified, 3 files readable, 2 matches

[17533] doi:10.7554/elife.101420 [paper, repository]

Aberration correction in long GRIN lens-based microendoscopes for extended field-of-view two-photon imaging in deep brain regions.

Journal: eLife

Authors' code: gitlab.iit.it/fellin-public/cite-on (Apache-2.0), gitlab.iit.it/chiara.nardin/longmicroendoscopes (GPL-3.0)

Status: code verified, 92 files readable, 16 matches

Thursday, 1 May 2025 (73 papers)

[17534] doi:10.1002/alz.70092 [paper, repository]

Directionality bias underpins divergent spatiotemporal progression of Alzheimer-related tauopathy in mouse models.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Raj-Lab-UCSF/Nexis (MIT), Raj-Lab-UCSF/Brainframe (MIT)

Status: code verified, 72 files readable, 1 match

[17535] doi:10.1002/alz.70167 [paper, repository]

Relationship between use of anti-platelet agents, oral anti-coagulants, and Aβ burden with cerebral microhemorrhages in cognitively asymptomatic adults.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: kaz-yos/tableone (no license)

Status: code verified, 48 files readable

[17536] doi:10.1002/alz.70170 [paper, data]

Multimodal spatial gradients to explain regional susceptibility to fibrillar tau in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[17537] doi:10.1002/alz.70239 [paper, repository]

Choroid plexus free-water correlates with glymphatic function in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: colorfulbrain/CP_FWf (no license)

Status: code verified, 9 files readable, 1 match

[17538] doi:10.1002/brb3.70428 [paper]

Single-Cell RNA and Transcriptome Sequencing to Analyze the Role of Lactate Metabolism in Traumatic Brain Injury Astrocytes.

Journal: Brain and behavior

Status: data only

[17539] doi:10.1002/brb3.70520 [paper, data]

Fusion-Brain-Net: A Novel Deep Fusion Model for Brain Tumor Classification.

Journal: Brain and behavior

Status: data only, 4 datasets cited

[17540] doi:10.1002/brb3.70556 [paper, repository]

Machine Learning-Based Identification of Children With Intermittent Exotropia Using Multiple Resting-State Functional Magnetic Resonance Imaging Features.

Journal: Brain and behavior

Authors' code: salan668/FAE (Apache-2.0)

Status: code verified, 95 files readable, 5 matches

[17541] doi:10.1002/cne.70056 [paper, data]

Ontogenetic Changes in Endocranial Anatomy in Gorgosaurus libratus (Theropoda: Tyrannosauridae) Provide Insight Into the Evolution of the Tyrannosauroid Endocranium.

Journal: The Journal of comparative neurology

Status: data only, 1 dataset cited

[17542] doi:10.1002/ctm2.70347 [paper, data]

The deubiquitinase OTUD3 plays a neuroprotective role by reducing ferroptosis induced by cerebral ischaemia reperfusion via stabilizing PLK1 via deubiquitination.

Journal: Clinical and translational medicine

Status: data only, 1 dataset cited

[17543] doi:10.1002/dys.70004 [paper, repository]

What Are the Research Priorities for the Dyslexia Community in the United Kingdom and How Do They Align With Previous Research Funding?

Journal: Dyslexia (Chichester, England)

Authors' code: OSF sgy7t (no license)

Status: empty repository

[17544] doi:10.1002/exp.20240087 [paper, data]

Deciphering the Potential Causal and Prognostic Relationships Between Gut Microbiota and Brain Tumors: Insights from Genetics Analysis and Machine Learning.

Journal: Exploration (Beijing, China)

Status: data only, 1 dataset cited

[17545] doi:10.1002/hbm.70080 [paper, repository]

Multi-Metric Approach for the Comparison of Denoising Techniques for Resting-State fMRI.

Journal: Human brain mapping

Authors' code: OSF pdc3g (no license)

Status: code verified, 3 files readable, 5 matches

[17546] doi:10.1002/hbm.70225 [paper, repository]

Topography of Functional Organization of Beat Perception in Human Premotor Cortex: Causal Evidence From a Transcranial Magnetic Stimulation (TMS) Study.

Journal: Human brain mapping

Authors' code: OSF atkxp (no license)

Status: code verified, 3 files readable

[17547] doi:10.1002/hipo.70013 [paper, repository]

A Theory and Model of Scene Representations With Hippocampal Spatial View Cells.

Journal: Hippocampus

Authors' code: oxcns.org/neuronalnetworksimulationsoftware.html (no license), oxcns.org (no license)

Status: code verified

[17548] doi:10.1002/jdn.70021 [paper, data]

Impact of Prematurity and Neonatal Complications on the Development of Dyslexia.

Journal: International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience

Status: data only, 1 dataset cited

[17549] doi:10.1002/jnr.70045 [paper]

Effect of Anesthesia and Diurnal Variation on Chronic Vagus Nerve Activity in Rats.

Journal: Journal of neuroscience research

Status: code on request

[17550] doi:10.1016/j.celrep.2025.115636 [paper, repository]

Increased burden of rare risk variants across gene expression networks predisposes to sporadic Parkinson's disease.

Journal: Cell reports

Authors' code: Zenodo 15002590 (MIT), GP2code/GenoTools (Apache-2.0)

Status: code verified, 17 files readable

[17551] doi:10.1016/j.neuron.2025.04.035 [paper, repository]

Enhancer AAV toolbox for accessing and perturbing striatal cell types and circuits.

Journal: Neuron

Authors' code: AllenInstitute/MIES (BSD-2-Clause), AllenInstitute/ipfx (BSD-2-Clause)

Status: code verified, 193 files readable, 2 matches

[17552] doi:10.1038/s41467-025-58616-6 [paper, repository]

Conveying tactile object characteristics through customized intracortical microstimulation of the human somatosensory cortex.

Journal: Nature communications

Authors' code: Zenodo 14722512 (MIT), ceciverbaarschot/interactivestiminterface (MIT)

Status: code verified, 56 files readable, 7 matches

[17553] doi:10.1038/s41467-025-59252-w [paper, repository]

Altered extracellular matrix structure and elevated stiffness in a brain organoid model for disease.

Journal: Nature communications

Authors' code: Zenodo 15028450 (GPL-3.0), jenschwarz/cellsfibers2dmechanicalmodel (GPL-3.0)

Status: code verified, 8 files readable

[17554] doi:10.1038/s41592-025-02670-x [paper, data]

ATLAS: a rationally designed anterograde transsynaptic tracer.

Journal: Nature methods

Status: data only, 1 dataset cited

[17555] doi:10.1038/s41593-025-01948-9 [paper, repository]

A competitive disinhibitory network for robust optic flow processing in Drosophila.

Journal: Nature neuroscience

Authors' code: misaacson01/Motion_Maker_G4 (MIT), ChiappeLab/Erginkaya_et_al_2025 (MIT)

Status: code verified, 65 files readable, 7 matches

[17556] doi:10.1038/s41597-025-05038-0 [paper, repository]

CLIMATE BRAIN - Questionnaires, Tasks and the Neuroimaging Dataset.

Journal: Scientific data

Authors' code: nencki-lobi/climate-brain (MIT)

Status: code verified, 40 files readable, 11 matches

[17557] doi:10.1038/s41598-025-00071-w [paper, data]

Novel accurate classification system developed using order transition pattern feature engineering technique with physiological signals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17558] doi:10.1038/s41598-025-98595-8 [paper, data]

Visuomotor paired associative stimulation enhances corticospinal excitability in post-stroke patients with upper-limb hemiparesis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17559] doi:10.1093/bib/bbaf213 [paper, repository]

PPIxGPN: plasma proteomic profiling of neurodegenerative biomarkers with protein-protein interaction-based eXplainable graph propagational network.

Journal: Briefings in bioinformatics

Authors' code: sunghongpark-ai/PPIxGPN (no license)

Status: code verified, 36 files readable

[17560] doi:10.1093/bib/bbaf250 [paper, repository]

A multivariable cis-Mendelian randomization method robust to weak instrument bias and horizontal pleiotropy bias.

Journal: Briefings in bioinformatics

Authors' code: harryyiheyang/MRBEEX (other)

Status: code verified, 40 files readable, 2 matches

[17561] doi:10.1093/bib/bbaf258 [paper, repository]

Alpha_Mesh_Swc: automatic and robust surface mesh generation from the skeleton description of brain cells.

Journal: Briefings in bioinformatics

Authors' code: fachra/swc2mesh (GPL-2.0), SpinDoctorMRI/Alpha_Mesh_Swc (GPL-3.0), SpinDoctorMRI/Alpha_Mesh_Swc_DataSet (GPL-3.0), spindoctormri/spindoctor (GPL-3.0)

Status: code verified, 281 files readable, 14 matches

[17562] doi:10.1093/bib/bbaf291 [paper, repository]

Genetic regulation of lncRNA expression in whole human brain and their contribution to CNS disorders.

Journal: Briefings in bioinformatics

Authors' code: hyj260/LncBRAIN (no license)

Status: code verified, 5 files readable, 1 match

[17563] doi:10.1093/brain/awae347 [paper, data]

CCL2 blockade combined with PD-1/P-selectin immunomodulators impedes breast cancer brain metastasis.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[17564] doi:10.1093/brain/awae355 [paper, repository]

Single-nucleus transcriptomics reveals disease- and pathology-specific signatures in α-synucleinopathies.

Journal: Brain : a journal of neurology

Authors' code: git.app.uib.no/neuromics/sn-rna-seq-alphasyn (no license)

Status: code verified

[17565] doi:10.1093/brain/awae356 [paper, repository]

Smaller cingulate grey matter mediates the association between dual-task gait and incident dementia.

Journal: Brain : a journal of neurology

Authors' code: dwong263/magiq (no license)

Status: code verified, 65 files readable, 3 matches

[17566] doi:10.1093/brain/awae361 [paper, repository]

Multicentre analysis of seizure outcome predicted by removal of high-frequency oscillations.

Journal: Brain : a journal of neurology

Authors' code: ZurichNCH/Automatic-High-Frequency-Oscillation-Detector (Apache-2.0)

Status: code verified, 21 files readable, 3 matches

[17567] doi:10.1093/brain/awae374 [paper]

Parvalbumin neurons mediate neurological phenotypes of anti-NMDAR encephalitis.

Journal: Brain : a journal of neurology

Status: code on request

[17568] doi:10.1093/brain/awaf022 [paper, repository]

White matter connections within the central sulcus subserving the somato-cognitive action network.

Journal: Brain : a journal of neurology

Authors' code: DCAN-Labs/abcd-hcp-pipeline (BSD-3-Clause)

Status: code verified, 8 files readable

[17569] doi:10.1093/brain/awaf062 [paper, repository]

A right frontal network for analogical and deductive reasoning.

Journal: Brain : a journal of neurology

Authors' code: high-dimensional/reasoning (no license)

Status: dead link

[17570] doi:10.1093/cercor/bhaf101 [paper, repository]

Subcortical nuclei of the human ascending arousal system encode anticipated reward but do not predict subsequent memory.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: bethlloyd/subcortical_nuclei_of_the_human_AAS (CC-BY-4.0)

Status: code verified, 15 files readable, 13 matches

[17571] doi:10.1093/cercor/bhaf110 [paper, repository]

Repeated application of bifocal transcranial alternating current stimulation improves network connectivity but not response inhibition: a double-blind sham control study.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF bdy4q (no license)

Status: code found, still to be checked

[17572] doi:10.1093/cercor/bhaf112 [paper, repository]

Odorant representations indicate nonlinear processing across the olfactory system.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: patoorio/wavelets (no license)

Status: code verified, 3 files readable

[17573] doi:10.1093/cercor/bhaf114 [paper, repository]

Neural state changes during movie watching relate to episodic memory in younger and older adults.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF vc8s3 (no license)

Status: code verified, 3 files readable, 2 matches

[17574] doi:10.1093/cercor/bhaf115 [paper, repository]

Examining the role of phonological and semantic mechanisms during morphological processing of sentences in 7-year-old children.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: marjoleinmues/Phonological_Semantic_Mechanisms_During_Morphological_Processing_7yo (no license)

Status: code verified, 23 files readable, 3 matches

[17575] doi:10.1093/g3journal/jkaf049 [paper, data]

Arsenic impairs Drosophila neural stem cell mitotic progression and sleep behavior in a tauopathy model.

Journal: G3 (Bethesda, Md.)

Status: data only, 1 dataset cited

[17576] doi:10.1093/gerona/glaf075 [paper, repository]

Brain Resting-state Functional Connectivity Mediates the Age-associated Decline in Physical Activity Engagement.

Journal: The journals of gerontology. Series A, Biological sciences and medical sciences

Authors' code: cran.r-project.org/web/packages (no license)

Status: code verified

[17577] doi:10.1093/scan/nsaf032 [paper, repository]

Age-related differences in trust decisions: when memory fails and appearances prevail.

Journal: Social cognitive and affective neuroscience

Authors' code: alicexue/fmri-pipeline (no license)

Status: code verified, 23 files readable

[17578] doi:10.1093/scan/nsaf033 [paper, repository]

Priority of spontaneous gender categorization of same-sex faces in young adults.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF xem75 (no license)

Status: empty repository

[17579] doi:10.1093/scan/nsaf034 [paper, data]

Grandmaternal caregiving is associated with a distinct multi-voxel neural representation of grandchildren in the parental motivation circuit.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[17580] doi:10.1093/scan/nsaf035 [paper]

Taking an embodied avatar's perspective modulates the temporal dynamics of vicarious pain and pleasure: a virtual reality and EEG study.

Journal: Social cognitive and affective neuroscience

Status: code on request

[17581] doi:10.1093/scan/nsaf036 [paper, repository]

Neural correlates of power-related postures and their behavioural consequences: a preliminary electrophysiological investigation.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 9x8rn (no license)

Status: code verified, 2 files readable, 1 match

[17582] doi:10.1093/scan/nsaf038 [paper, repository]

A cross-cultural EEG study of how obedience and conformity influence reconciliation intentions.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 2xrfg (no license)

Status: code verified, 7 files readable, 4 matches

[17583] doi:10.1093/scan/nsaf041 [paper, data]

Noninvasive ventromedial prefrontal cortex stimulation can enhance and impair affective learning from rewarding and threatening stimuli.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[17584] doi:10.1093/scan/nsaf043 [paper, data]

Predicting whole-brain neural dynamics from prefrontal cortex functional near-infrared spectroscopy signal during movie-watching.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[17585] doi:10.1093/scan/nsaf046 [paper, repository]

Baseline physical activity moderates brain-behaviour relationships in response to framed health messages.

Journal: Social cognitive and affective neuroscience

Authors' code: nipype.readthedocs.io (no license)

Status: code verified

[17586] doi:10.1096/fj.202500594r [paper, repository]

Surrogate GPR139 Agonists Reverse Short-Term Startle Habituation Impairment in Larval Zebrafish.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Authors' code: davidkow9999/GPR139_IVCL_Scripts (no license)

Status: code verified, 4 files readable

[17587] doi:10.1111/adb.70040 [paper, data]

Abnormal Cortical Thickness Development in Young Adults With Heavy Cannabis Use: A Longitudinal Study.

Journal: Addiction biology

Status: data only, 1 dataset cited

[17588] doi:10.1111/apha.70031 [paper, data]

Neuronal activity modulates the expression of secretagogin, a Ca<sup>2+</sup> sensor protein, during mammalian forebrain development.

Journal: Acta physiologica (Oxford, England)

Status: data only, 1 dataset cited

[17589] doi:10.1111/cns.70405 [paper]

Distinct Mechanisms of Multiple Alpha-Band Activities in Frontal Regions Following an 8-Week Medium- (Yoga) and High-Intensity (Pamela) Exercise Intervention.

Journal: CNS neuroscience & therapeutics

Status: code on request

[17590] doi:10.1111/cns.70438 [paper, data]

Lipocalin 2 Facilitates the Initial Compromise of the Blood-Brain Barrier Integrity in Chronic Cerebral Hypoperfusion.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[17591] doi:10.1111/cogs.70064 [paper, repository]

Discovering Dynamical Laws for Speech Gestures.

Journal: Cognitive science

Authors' code: Zenodo 15101639 (CC-BY-4.0)

Status: code verified

[17592] doi:10.1111/desc.70009 [paper, repository]

Maternal Interaction Relates to Neural Processing of Self-Related Multisensory Information in 5-Month-Olds.

Journal: Developmental science

Authors' code: OSF sng5e (no license)

Status: code verified, 4 files readable, 2 matches

[17593] doi:10.1111/ejn.70127 [paper, data]

Stability of Neural Oscillations Supports Auditory-Motor Synchronization.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[17594] doi:10.1111/ejn.70128 [paper, repository]

Magnetoencephalography Dimensionality Reduction Informed by Dynamic Brain States.

Journal: The European journal of neuroscience

Authors' code: lionelkusch/patien-analysis (no license)

Status: code verified, 102 files readable, 1 match

[17595] doi:10.1111/infa.70026 [paper, repository]

Neural Representations of Grasp Congruence During the Emergence of Precision Grasping.

Journal: Infancy : the official journal of the International Society on Infant Studies

Authors' code: OSF 9xah3 (no license)

Status: code verified, 4 files readable

[17596] doi:10.1111/psyp.70060 [paper, repository]

Dual-Site Beta tACS Over the rIFG and preSMA-Induced Phase-Specific Changes in Functional Connectivity but not Response Inhibition Performance in Older Adults.

Journal: Psychophysiology

Authors' code: OSF frsg2 (no license)

Status: code verified, 2 files readable, 3 matches

[17597] doi:10.1111/psyp.70070 [paper, data]

Selective Effects of Ongoing Alpha-Band Activity on Magno- and Parvo-Mediated Detection.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[17598] doi:10.1111/psyp.70076 [paper, repository]

Limited Evidence for Probabilistic Cueing Effects on Grating-Evoked Event-Related Potentials and Orientation Decoding Performance.

Journal: Psychophysiology

Authors' code: OSF ygm69 (no license)

Status: code verified, 21 files readable, 13 matches

[17599] doi:10.1186/s12864-025-11508-x [paper, repository]

lute: estimating the cell composition of heterogeneous tissue with varying cell sizes using gene expression.

Journal: BMC genomics

Authors' code: LieberInstitute/deconvo_lute-paper (MIT), Zenodo 13227298 (CC-BY-4.0), Zenodo 10903835 (CC-BY-4.0)

Status: code verified, 181 files readable, 13 matches

[17600] doi:10.1186/s12864-025-11588-9 [paper, repository]

Ge-SAND: an explainable deep learning-driven framework for disease risk prediction by uncovering complex genetic interactions in parallel.

Journal: BMC genomics

Authors' code: LHDLHUB/Ge-SAND (no license)

Status: code verified, 8 files readable, 2 matches

[17601] doi:10.1210/endocr/bqaf083 [paper, data]

NPAS4 Depletion in POMC Neurons Protects From Obesity and Alters the Feeding-regulated Transcriptome in Male Mice.

Journal: Endocrinology

Status: data only, 2 datasets cited

[17602] doi:10.1242/dev.204369 [paper, repository]

N-cadherin facilitates trigeminal sensory neuron outgrowth and target tissue innervation.

Journal: Development (Cambridge, England)

Authors' code: Zenodo 15257825 (CC-BY-4.0), Zenodo 15257824 (CC-BY-4.0)

Status: code verified, 2 files readable

[17603] doi:10.3389/fnhum.2025.1569282 [paper, repository]

Video-evoked neuromarkers of visual function in age-related macular degeneration.

Journal: Frontiers in human neuroscience

Authors' code: MIPLabCH/VENM-AMD (CC0-1.0)

Status: code verified, 9 files readable, 10 matches

[17604] doi:10.3724/abbs.2025082 [paper, data]

The lncRNA DANCR promotes breast cancer brain metastasis by acting as a ceRNA for miR-758-3p to regulate PTGS2 expression.

Journal: Acta biochimica et biophysica Sinica

Status: data only, 1 dataset cited

[17605] doi:10.7554/elife.100064 [paper, repository]

Neural geometry from mixed sensorimotor selectivity for predictive sensorimotor control.

Journal: eLife

Authors' code: data.mendeley.com/datasets/8gngr6tphf (no license), yunchenyc/rnn_ringlike_structure (MIT)

Status: code verified, 25 files readable, 4 matches

[17606] doi:10.7554/elife.100788 [paper, repository]

Seasonal and comparative evidence of adaptive gene expression in mammalian brain size plasticity.

Journal: eLife

Authors' code: wrthomas315/Sorex_Hypothalamus_Transcriptomics2 (MIT)

Status: code verified, 34 files readable, 4 matches

Wednesday, 30 April 2025 (59 papers)

[17607] doi:10.1002/advs.202412373 [paper, repository]

MEA-seqX: High-Resolution Profiling of Large-Scale Electrophysiological and Transcriptional Network Dynamics.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: HayderAminLab/MEA-seqX (BSD-3-Clause), KrishnaswamyLab/PHATE (other), YingMa0107/CARD (GPL-3.0)

Status: code verified, 65 files readable, 23 matches

[17608] doi:10.1007/s12035-025-04997-0 [paper, data]

Decoding Alzheimer's Disease: Single-Cell Sequencing Uncovers Brain Cell Heterogeneity and Pathogenesis.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[17609] doi:10.1016/j.biopsycho.2025.109043 [paper, repository]

Insular functional connectivity in autistic and non-autistic development.

Journal: Biological psychology

Authors' code: baxpr/connprep (no license), baxpr/conncalc (no license)

Status: code verified, 87 files readable, 1 match

[17610] doi:10.1016/j.bpsgos.2025.100522 [paper, repository]

Somatomotor Disconnection Links Sleep Duration With Socioeconomic Context, Screen Time, Cognition, and Psychopathology.

Journal: Biological psychiatry global open science

Authors' code: SripadaLab/ABCD_Resting_Sleep_GraphTheory (GPL-3.0)

Status: code verified, 6 files readable, 3 matches

[17611] doi:10.1016/j.immuni.2025.04.006 [paper, repository]

Monocytes can efficiently replace all brain macrophages and fetal liver monocytes can generate bona fide SALL1<sup>+</sup> microglia.

Journal: Immunity

Authors' code: Zenodo 15263274 (CC-BY-4.0), immunogenomics/harmony (no license), movahedilab/bastos_et_al (no license)

Status: code verified, 42 files readable, 11 matches

[17612] doi:10.1016/j.isci.2025.112566 [paper]

Cannabinoid overrides triggers of GABAergic plasticity in vestibular circuits and distorts the development of navigation.

Journal: iScience

Status: code on request

[17613] doi:10.1016/j.mcpro.2025.100980 [paper, repository]

Benchmarking SILAC Proteomics Workflows and Data Analysis Platforms.

Journal: Molecular & cellular proteomics : MCP

Authors' code: HaoGroup (no license)

Status: code verified

[17614] doi:10.1038/s41467-025-58879-z [paper, repository]

Divergent actions of physiological and pathological amyloid-β on synapses in live human brain slice cultures.

Journal: Nature communications

Authors' code: Spires-Jones-Lab (no license)

Status: code verified

[17615] doi:10.1038/s41467-025-59117-2 [paper, repository]

The motor neuron m6A repertoire governs neuronal homeostasis and FTO inhibition mitigates ALS symptom manifestation.

Journal: Nature communications

Authors' code: jaclab-multiomic/Yen-et-al.-2025-Nat-Comm (MIT), figshare 238025 (CC-BY-4.0)

Status: code verified, 5 files readable, 6 matches

[17616] doi:10.1038/s41467-025-59190-7 [paper, repository]

Viscoelastic extracellular matrix enhances epigenetic remodeling and cellular plasticity.

Journal: Nature communications

Authors' code: li-lab.seas.ucla.edu/requestform (no license)

Status: code verified

[17617] doi:10.1038/s41467-025-59417-7 [paper, repository]

Closed-loop control of theta oscillations enhances human hippocampal network connectivity.

Journal: Nature communications

Authors' code: Zenodo 5539831 (other-open), Zenodo 14735080 (GPL-3.0), tne-lab/torte (GPL-3.0)

Status: code verified, 7 files readable

[17618] doi:10.1038/s41586-025-08809-2 [paper, repository]

Serotonin and neurotensin inputs in the vCA1 dictate opposing social valence.

Journal: Nature

Authors' code: Zenodo 14814674 (CC-BY-4.0)

Status: code verified, 4 files readable

[17619] doi:10.1038/s41586-025-08888-1 [paper, repository]

Adversarial testing of global neuronal workspace and integrated information theories of consciousness.

Journal: Nature

Authors' code: OSF 92tbg (no license), Cogitate-consortium/cogitate-experiment-code (MIT), Cogitate-consortium/cogitate-msp1 (MIT), Zenodo 19091855 (CC-BY-4.0)

Status: code verified, 275 files readable, 40 matches

[17620] doi:10.1038/s41586-025-08925-z [paper, repository]

Comparative connectomics of Drosophila descending and ascending neurons.

Journal: Nature

Authors' code: flyconnectome/2023neckconnective (no license), htem/fanc_auto_recon (GPL-3.0), navis-org/navis (GPL-3.0), navis-org/fafbseg-py (GPL-3.0), navis-org/navis-flybrains (GPL-3.0), navis-org/skeletor (GPL-3.0), natverse/fafbseg (GPL-3.0), natverse/coconatfly (no license), natverse/malevnc (GPL-3.0)

Status: code verified, 593 files readable, 6 matches

[17621] doi:10.1038/s41586-025-08933-z [paper, repository]

Regulation of PV interneuron plasticity by neuropeptide-encoding genes.

Journal: Nature

Authors' code: Zenodo 5127899 (other-open), fursham-h/Nature_Selten_Supplementary (no license), felixkrueger/trimgalore (GPL-3.0)

Status: code verified, 33 files readable

[17622] doi:10.1038/s41593-025-01936-z [paper, data]

Single-cell genotyping and transcriptomic profiling of mosaic focal cortical dysplasia.

Journal: Nature neuroscience

Status: code on request, 1 dataset cited

[17623] doi:10.1038/s41598-024-78411-5 [paper, data]

Molecular dynamics simulation and docking studies reveals inhibition of NF-kB signaling as a promising therapeutic drug target for reduction in cytokines storms.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17624] doi:10.1038/s41598-025-97696-8 [paper, data]

M-NIG: mobile network information gain for EEG-based epileptic seizure prediction.

Journal: Scientific reports

Status: data only, 2 datasets cited

[17625] doi:10.1038/s42003-025-08090-z [paper, repository]

Caffeine induces age-dependent increases in brain complexity and criticality during sleep.

Journal: Communications biology

Authors' code: dav0dea/caffeine-sleep (no license)

Status: code verified, 15 files readable, 14 matches

[17626] doi:10.1038/s42003-025-08122-8 [paper, data]

Modulation of beta oscillatory dynamics in motor and frontal areas during physical fatigue.

Journal: Communications biology

Status: data only, 1 dataset cited

[17627] doi:10.1038/s44319-025-00460-2 [paper]

mTOR controls ependymal cell differentiation by targeting the alternative cell cycle and centrosomal proteins.

Journal: EMBO reports

Status: data only

[17628] doi:10.1101/2025.04.29.25326627 [paper, repository]

Longitudinal development of sex differences in the limbic system is associated with age, puberty and mental health

Journal: medRxiv (preprint)

Authors' code: gloriamatte (no license)

Status: code verified

[17629] doi:10.1111/acel.70075 [paper, repository]

Identifying Age-Modulating Compounds Using a Novel Computational Framework for Evaluating Transcriptional Age.

Journal: Aging cell

Authors' code: zhangch/RNAgePaper (no license), ENCODE-DCC/atac-seq-pipeline (MIT)

Status: code verified, 65 files readable, 3 matches

[17630] doi:10.1111/pcn.13829 [paper, repository]

Understanding heterogeneity in psychiatric disorders: A method for identifying subtypes and parsing comorbidity.

Journal: Psychiatry and clinical neurosciences

Authors' code: Aglinskas/pub-CVAE-sim-neuroanatomy (MIT)

Status: code verified, 63 files readable, 6 matches

[17631] doi:10.1126/sciadv.ads6841 [paper, repository]

Supervised and unsupervised learning reveal heroin-induced impairments in astrocyte structural plasticity.

Journal: Science advances

Authors' code: MichelaMarini/Morphological-analysis-of-astrocytes (MIT), Zenodo 13821424 (MIT)

Status: code verified, 20 files readable, 9 matches

[17632] doi:10.1126/sciadv.adt8976 [paper, repository]

Impaired parvalbumin interneurons in the retrosplenial cortex as the cause of sex-dependent vulnerability in Alzheimer's disease.

Journal: Science advances

Authors' code: Zenodo 14984481 (CC-BY-4.0), dterstege/publicationrepo (no license), Zenodo 14613216 (CC-BY-4.0)

Status: code verified, 32 files readable, 6 matches

[17633] doi:10.1162/imag_a_00548 [paper, repository]

Non-parametric prediction of brain MRI microstructure using transfer learning.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: gustavochau/Brain_microstructure_initial (no license), emmweber/MRI_EM_brain_microstructure (no license)

Status: code verified, 12 files readable, 9 matches

[17634] doi:10.1162/imag_a_00557 [paper, repository]

Lesion-network mapping in task-dependent frequencies uncovers remote consequences of focal damage.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 3892185 (other-open)

Status: code verified, 13 files readable, 6 matches

[17635] doi:10.1162/imag_a_00561 [paper]

Attenuated and delayed neural activity in cortical microcircuitry of monocular processing and binocular interactions in human amblyopia.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[17636] doi:10.1162/netn_a_00443 [paper, data]

Neurobiologically informed graph theory analysis of the language system.

Journal: Network neuroscience (Cambridge, Mass.)

Status: data only, 2 datasets cited

[17637] doi:10.1162/netn_a_00444 [paper, repository]

Quantifying the influence of biophysical factors in shaping brain communication through remnant functional networks.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: jnakuci/Remnant-Functional-Networks (no license)

Status: code verified, 10 files readable, 2 matches

[17638] doi:10.1162/netn_a_00445 [paper, data]

Efficacy of functional connectome fingerprinting using tangent-space brain networks.

Journal: Network neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[17639] doi:10.1162/netn_a_00446 [paper, repository]

The impact of transcranial random noise stimulation (tRNS) on alpha coherence and verbal divergent thinking.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: OSF r67fj (no license)

Status: code verified, 3 files readable, 1 match

[17640] doi:10.1162/netn_a_00447 [paper, repository]

Predicting response speed and age from task-evoked effective connectivity.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: CogPsycho2023/DCMs2 (no license)

Status: code verified, 19 files readable, 1 match

[17641] doi:10.1186/s13293-025-00712-9 [paper, repository]

Sex-specific DNA methylation signatures of autism spectrum disorder from whole genome bisulfite sequencing of newborn blood.

Journal: Biology of sex differences

Authors' code: ben-laufer/DMRichR (MIT), juliamouat/NewbornBlood_DNAmethylation_ASD (MIT)

Status: code verified, 28 files readable, 8 matches

[17642] doi:10.1186/s40168-025-02095-w [paper, repository]

Distinct gut microbiome characteristics and dynamics in patients with Parkinson's disease based on the presence of premotor rapid-eye movement sleep behavior disorders.

Journal: Microbiome

Authors' code: gitlab.inria.fr/cfrioux/enterosignature-paper (GPL-2.0), jylee3247/PD-with-or-without-premotor-RBD-gut-microbiome (no license), Zenodo 13987680 (CC-BY-4.0)

Status: code verified, 57 files readable, 9 matches

[17643] doi:10.1186/s40478-025-01999-w [paper, repository]

Prion replication in organotypic brain slice cultures is distinct from in vivo inoculation and is species dependent.

Journal: Acta neuropathologica communications

Authors' code: jslota/rtquicR (GPL-3.0)

Status: code verified, 5 files readable, 2 matches

[17644] doi:10.1186/s40708-025-00256-z [paper, data]

HoRNS-CNN model: an energy-efficient fully homomorphic residue number system convolutional neural network model for privacy-preserving classification of dyslexia neural-biomarkers.

Journal: Brain informatics

Status: data only, 1 dataset cited

[17645] doi:10.1186/s40814-025-01639-z [paper, data]

iSupport for rare dementias: a mixed-methods non-randomised feasibility study of an online self-help programme for carers.

Journal: Pilot and feasibility studies

Status: data only, 1 dataset cited

[17646] doi:10.1192/bjp.2024.282 [paper]

Neural correlates of social affect and social cognition as risk markers of bipolar disorder.

Journal: The British journal of psychiatry : the journal of mental science

Status: code on request

[17647] doi:10.1371/journal.pbio.3003149 [paper, repository]

Removing facial features from structural MRI images biases visual quality assessment.

Journal: PLoS biology

Authors' code: TheAxonLab/defacing-and-qc-analysis (Apache-2.0), Zenodo 15103450 (Apache-2.0), OSF 8mcyz (no license), Zenodo 6856482 (other-open), OSF edx6t (no license), poldracklab/pydeface (MIT)

Status: code verified, 49 files readable, 5 matches

[17648] doi:10.1371/journal.pcbi.1012989 [paper, repository]

Foraging animals use dynamic Bayesian updating to model meta-uncertainty in environment representations.

Journal: PLoS computational biology

Authors' code: jbwebb8/foraging-analysis (no license), kemerelab/TreadmillIO (no license), kemerelab/cap-sensor (no license), kemerelab/TreadmillIOhere (no license), kemerelab/cap-sensorhere (no license)

Status: code verified, 66 files readable, 7 matches

[17649] doi:10.1371/journal.pone.0320722 [paper, data]

No evidence of reduced capacity during highly demanding cognitive tasks in healthy older adults at electroencephalographic risk of cognitive impairment.

Journal: PloS one

Status: data only, 1 dataset cited

[17650] doi:10.1371/journal.pone.0322092 [paper, data]

Control signal dimensionality depends on limb dynamics.

Journal: PloS one

Status: data only, 1 dataset cited

[17651] doi:10.1523/jneurosci.1187-24.2025 [paper, repository]

Spike Rate Inference from Mouse Spinal Cord Calcium Imaging Data.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: HelmchenLabSoftware/Cascade (GPL-3.0)

Status: code verified, 20 files readable, 6 matches

[17652] doi:10.1523/jneurosci.1436-24.2025 [paper, repository]

Understanding Human Amygdala Function with Artificial Neural Networks.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: ecco-laboratory/AMOD (no license), ecco-laboratory/emonet-pytorch (MIT)

Status: code verified, 30 files readable, 8 matches

[17653] doi:10.1523/jneurosci.2347-24.2025 [paper, repository]

Neural Dynamics of Reselecting Visual and Motor Contents in Working Memory after External Interference.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF c56eb (no license)

Status: code verified, 13 files readable, 6 matches

[17654] doi:10.2147/nss.s506461 [paper, repository]

We are the Sensors of Consciousness! A Review and Analysis on How Awakenings During Sleep Influence Dream Recall.

Journal: Nature and science of sleep

Authors' code: bstucky/sensors-of-consciousness (no license)

Status: code verified, 3 files readable, 1 match

[17655] doi:10.3389/fimmu.2025.1579905 [paper, data]

From <i>Biomphalaria glabrata</i> to <i>Drosophila melanogaster</i> and <i>Anopheles gambiae</i>: the diversity and role of FREPs and Dscams in immune response.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[17656] doi:10.3389/fnbot.2025.1531815 [paper, data]

Medium density EMG armband for gesture recognition.

Journal: Frontiers in neurorobotics

Status: data only, 1 dataset cited

[17657] doi:10.3389/fncom.2025.1568143 [paper, repository]

Synaptic plasticity facilitates oscillations in a V1 cortical column model with multiple interneuron types.

Journal: Frontiers in computational neuroscience

Authors' code: GiuliaMoreni95/Cortical_column_model_oscillations (no license)

Status: code verified, 29 files readable, 8 matches

[17658] doi:10.3389/fnins.2025.1488709 [paper, repository]

Seven unique frequency profiles for scoring vigilance states in preclinical electrophysiological data.

Journal: Frontiers in neuroscience

Authors' code: chronux.org (no license), FrejaGam/EEGcode (GPL-3.0)

Status: code verified, 17 files readable, 4 matches

[17659] doi:10.3389/fphar.2025.1569052 [paper, data]

Menthacarin, a proprietary combination of peppermint and caraway oil, alters cultured human fecal microbiota composition, resulting in increased SCFA production.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[17660] doi:10.3390/ani15091297 [paper, data]

The Glutamatergic System Regulates Feather Pecking Behaviors in Laying Hens Through the Gut-Brain Axis.

Journal: Animals : an open access journal from MDPI

Status: data only, 2 datasets cited

[17661] doi:10.34133/research.0657 [paper]

The Discovery of Phages in the Substantia Nigra and Its Implication for Parkinson's Disease.

Journal: Research (Washington, D.C.)

Status: data only

[17662] doi:10.34133/research.0689 [paper, repository]

Perfusion Parameter Map Generation from 3 Phases of Computed Tomography Perfusion in Stroke Using Generative Adversarial Networks.

Journal: Research (Washington, D.C.)

Authors' code: ruogufang/pct (GPL-3.0)

Status: code verified, 219 files readable, 4 matches

[17663] doi:10.3758/s13415-025-01298-w [paper]

Ultra-high resolution imaging of laminar thickness in face-selective cortex in autism.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request

[17664] doi:10.4103/nrr.nrr-d-24-01163 [paper, data]

A single-cell landscape of the regenerating spinal cord of zebrafish.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[17665] doi:10.7554/elife.99808 [paper, repository]

Untangling stability and gain modulation in cortical circuits with multiple interneuron classes.

Journal: eLife

Authors' code: brain-math/stability-gain-with-multiple-INs (no license)

Status: code verified, 10 files readable

Tuesday, 29 April 2025 (47 papers, 31 on this page)

[17666] doi:10.1002/advs.202416879 [paper, repository]

Synchrotron Radiation-Based Tomography of an Entire Mouse Brain with Sub-Micron Voxels: Augmenting Interactive Brain Atlases with Terabyte Data.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: google/neuroglancer (Apache-2.0)

Status: code verified, 912 files readable

[17667] doi:10.1007/s12035-025-04965-8 [paper, data]

Functional Specificity of Astrocyte Subtypes in Alzheimer's Disease: Decoding Disease Mechanisms Through Network-based Analysis of Integrated Single-Nuclei Multi-Omic Data.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[17668] doi:10.1016/j.celrep.2025.115637 [paper, data]

Meningeal-derived retinoic acid regulates neurogenesis via suppression of Notch and Sox2.

Journal: Cell reports

Status: code on request, 1 dataset cited

[17669] doi:10.1016/j.isci.2025.112552 [paper]

Young rat vascular endothelial cells promote neurological recovery of stroke aged rat via HIF-1α.

Journal: iScience

Status: code on request

[17670] doi:10.1016/j.patter.2025.101242 [paper, repository]

Fine-Pruning: A biologically inspired algorithm for personalization of machine learning models.

Journal: Patterns (New York, N.Y.)

Authors' code: JosephBingham/fine_pruning_ck (no license), Zenodo 14886693 (CC-BY-4.0), Zenodo 1342401 (other-open), josephbingham/fine_pruning_ck- (no license)

Status: code verified, 11 files readable

[17671] doi:10.1038/s41377-025-01842-w [paper, data]

Real-time and universal network for volumetric imaging from microscale to macroscale at high resolution.

Journal: Light, science & applications

Status: data only, 1 dataset cited

[17672] doi:10.1038/s41467-025-58566-z [paper, repository]

A transient contractile seam promotes epithelial sealing and sequential assembly of body segments.

Journal: Nature communications

Authors' code: mmarinriera/dorsal_closure_simulation (no license)

Status: code verified, 26 files readable, 5 matches

[17673] doi:10.1038/s41467-025-59270-8 [paper, repository]

Heat and hospitalization risks among people with disabilities in South Korea.

Journal: Nature communications

Authors' code: pjapja0823/NComm_DSB_Heat (no license), Zenodo 14970480 (CC-BY-4.0)

Status: code verified, 2 files readable

[17674] doi:10.1038/s41467-025-59303-2 [paper, repository]

Transparent, metal-free PEDOT:PSS neural interfaces for simultaneous recording of low-noise electrophysiology and artifact-free two-photon imaging.

Journal: Nature communications

Authors' code: Zenodo 14613681 (CC-BY-4.0)

Status: code verified, 2 files readable

[17675] doi:10.1038/s41591-025-03625-7 [paper, repository]

Broad rim lesions are a new pathological and imaging biomarker for rapid disease progression in multiple sclerosis.

Journal: Nature medicine

Authors' code: walter-ca/MS-lesions_code (MIT)

Status: code verified, 18 files readable, 6 matches

[17676] doi:10.1038/s41597-025-05023-7 [paper, repository]

Dataset of long-term multi-site LFP activity with spontaneous chronic seizures in temporal lobe epilepsy rats.

Journal: Scientific data

Authors' code: SancTUARYY/epilepsy-analysis (MIT)

Status: code verified, 8 files readable, 7 matches

[17677] doi:10.1038/s41598-025-00219-8 [paper, repository]

Study on real-time warning system of blind path for the visually impaired based on improved deep residual shrinkage network.

Journal: Scientific reports

Authors' code: liushanshan1/cloud (no license)

Status: code verified, 6 files readable, 1 match

[17678] doi:10.1038/s41598-025-99206-2 [paper, data]

Cross-tissue MiRNA profiling of extracellular vesicles and PBMCs from amyotrophic lateral sclerosis patients.

Journal: Scientific reports

Status: data only, 1 dataset cited

[17679] doi:10.1038/s41598-025-99576-7 [paper, repository]

Brain tumor detection empowered with ensemble deep learning approaches from MRI scan images.

Journal: Scientific reports

Authors' code: kaggle.com/code/jaykumar1607 (no license)

Status: dead link

[17680] doi:10.1038/s41598-025-99751-w [paper, repository]

Identification of novel TMEM16A blockers through integrated virtual screening, molecular dynamics, and experimental studies.

Journal: Scientific reports

Authors' code: tinyurl.com/3vmbvacc (no license)

Status: code verified

[17681] doi:10.1038/s41698-025-00909-6 [paper, repository]

Diagnostic and prognostic potential of cell-free RNAs in cerebrospinal fluid and plasma for brain tumors.

Journal: NPJ precision oncology

Authors' code: Zenodo 14869536 (CC-BY-4.0)

Status: code verified, 38 files readable, 10 matches

[17682] doi:10.1038/s42003-025-08100-0 [paper]

Modulation of Sel1L can alleviate altered ER homeostasis towards white matter damage in CKD-stroke complex.

Journal: Communications biology

Status: code on request

[17683] doi:10.1038/s42255-025-01294-x [paper, data]

GIPR agonism and antagonism decrease body weight and food intake via different mechanisms in male mice.

Journal: Nature metabolism

Status: data only, 1 dataset cited

[17684] doi:10.1038/s42255-025-01295-w [paper, data]

GIPR-Ab/GLP-1 peptide-antibody conjugate requires brain GIPR and GLP-1R for additive weight loss in obese mice.

Journal: Nature metabolism

Status: data only, 1 dataset cited

[17685] doi:10.1073/pnas.2401387122 [paper, data]

NEUROD1 efficiently converts peripheral blood cells into neurons with partial reprogramming by pluripotency factors.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[17686] doi:10.1073/pnas.2421386122 [paper, repository]

Behavioral resilience via dynamic circuit firing homeostasis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 15135013 (CC-BY-4.0)

Status: code verified

[17687] doi:10.1073/pnas.2421900122 [paper]

Calcium-activated chloride channel TMEM16A opens via pi-helical transition in transmembrane segment 4.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[17688] doi:10.1080/19490976.2025.2492377 [paper, data]

Multi-species probiotic supplement enhances vagal nerve function - results of a randomized controlled trial in patients with depression and healthy controls.

Journal: Gut microbes

Status: data only, 1 dataset cited

[17689] doi:10.1097/cce.0000000000001257 [paper, repository]

Early Pupil Abnormality Frequency Predicts Poor Outcomes and Enhances International Mission for Prognosis and Analysis of Clinical Trials in Traumatic Brain Injury (IMPACT) Model Prognostication in Traumatic Brain Injury.

Journal: Critical care explorations

Authors' code: fordivyav/TBI_Pupillometry (no license), links.lww.com/ccx/b502 (no license)

Status: code verified, 12 files readable, 5 matches

[17690] doi:10.1101/2025.04.29.651180 [paper]

Early visual experience elicits cellular and functional plasticity in the retina and alters behaviour

Journal: bioRxiv (preprint)

Status: code on request

[17691] doi:10.1111/mec.17748 [paper, repository]

Differences in Colour Pattern, Behaviour and Gene Expression in the Brain Suggest Divergent Camouflage Strategies in Sympatric Reef Fish Species.

Journal: Molecular ecology

Authors' code: M-Heckwolf/hamlet_camouflage_strategies (no license)

Status: code verified, 5 files readable, 6 matches

[17692] doi:10.1162/opmi_a_00196 [paper, repository]

Decoding Prosodic Information from Motion Capture Data: The Gravity of Co-Speech Gestures.

Journal: Open mind : discoveries in cognitive science

Authors' code: j-pohaku/TheGravityofCo-SpeechGestures (MIT)

Status: code verified, 6 files readable, 2 matches

[17693] doi:10.1186/s10020-025-01207-4 [paper, data]

Preclinical evaluation of AAV9-coSMN1 gene therapy for spinal muscular atrophy: efficacy and safety in mouse models and non-human primates.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 2 datasets cited

[17694] doi:10.1186/s12974-025-03455-x [paper]

Repurposing of epalrestat for neuroprotection in parkinson's disease via activation of the KEAP1/Nrf2 pathway.

Journal: Journal of neuroinflammation

Status: data only

[17695] doi:10.1186/s13046-025-03390-y [paper, data]

Targeting the HLA-E-NKG2A axis in combination with MS-275 enhances NK cell-based immunotherapy against DMG.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 1 dataset cited

[17696] doi:10.1186/s13073-025-01473-1 [paper, repository]

A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder.

Journal: Genome medicine

Authors' code: mjgirgenti/PTSDCorticalProteomics (Apache-2.0)

Status: code verified, 6 files readable, 11 matches

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