Every paper, by date: page 81

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 81 of 200: 22 April 2025 to 15 April 2025.

Tuesday, 22 April 2025 (38 papers, 22 on this page)

[17921] doi:10.1039/d5ra00709g [paper, data]

Tripeptides inhibit dual targets AChE and BACE-1: a computational study.

Journal: RSC advances

Status: data only, 1 dataset cited

[17922] doi:10.1063/5.0263191 [paper, repository]

Post-stroke spontaneous motor recovery in mice can be predicted from acute-phase local field potential using machine learning.

Journal: APL bioengineering

Authors' code: smazzanti/mrmr (MIT)

Status: code verified, 17 files readable

[17923] doi:10.1073/pnas.2419364122 [paper, repository]

40 Hz sensory stimulation enhances CA3-CA1 coordination and prospective coding during navigation in a mouse model of Alzheimer's disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: abigailpaulson/flicker-neuralcodes (MIT)

Status: code verified, 164 files readable, 6 matches

[17924] doi:10.1080/20008066.2025.2466886 [paper, data]

Hippocampal connectivity changes after traumatic memory reactivation with propranolol for posttraumatic stress disorder: a randomized fMRI study.

Journal: European journal of psychotraumatology

Status: data only, 1 dataset cited

[17925] doi:10.1088/1741-2552/adb88f [paper, data]

Precision non-invasive brain stimulation: an<i>in silico</i>pipeline for personalized control of brain dynamics.

Journal: Journal of neural engineering

Status: data only, 1 dataset cited

[17926] doi:10.1101/2025.04.17.649310 [paper, repository]

Connectome-based brain fingerprints predict early cognitive decline in Parkinson’s patients with minor hallucinations

Journal: bioRxiv (preprint)

Authors' code: juancarlosfarah/apero (MIT), netneurolab/neuromaps (CC-BY-NC-SA-4.0), ss1913/fingerprints_parkinson_mh (no license)

Status: code verified, 1,403 files readable, 14 matches

[17927] doi:10.1162/imag_a_00543 [paper, repository]

A robust approach for analyzing and mapping hierarchical brain connectome towards laminar-specific neural networks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: zw1989 (no license)

Status: code verified

[17928] doi:10.1162/imag_a_00544 [paper, repository]

<i>In vivo</i> human neurite exchange time imaging at 500 mT/m diffusion gradients: Neurite exchange time imaging on Connectome 2.0.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: kschan0214/gacelle (GPL-3.0)

Status: code verified, 213 files readable, 12 matches

[17929] doi:10.1162/imag_a_00545 [paper, repository]

Automated speech artefact removal from MEG data utilizing facial gestures and mutual information.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: BioMag/speech_artefact_removal (no license)

Status: code verified, 12 files readable, 7 matches

[17930] doi:10.1162/imag_a_00547 [paper, repository]

Reliability of structural brain change in cognitively healthy adult samples.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: LCBC-UiO/Long_Brain_Reliability (no license), surfer.nmr.mgh.harvard.edu (no license)

Status: code verified, 24 files readable, 3 matches

[17931] doi:10.1177/09567976251331041 [paper, data]

Co-Speech Hand Gestures Are Used to Predict Upcoming Meaning.

Journal: Psychological science

Status: data only, 2 datasets cited

[17932] doi:10.1186/s13195-025-01733-7 [paper, repository]

DNA methylation signature of a lifestyle-based resilience index for cognitive health.

Journal: Alzheimer's research & therapy

Authors' code: TransBioInfoLab/DNAm-and-RI (no license)

Status: code verified, 19 files readable, 5 matches

[17933] doi:10.1371/journal.pcbi.1012973 [paper, repository]

Emergence and maintenance of modularity in neural networks with Hebbian and anti-Hebbian inhibitory STDP.

Journal: PLoS computational biology

Authors' code: rbergoin/QIF-neurons-with-3-synaptic-plasticities (no license)

Status: code verified, 7 files readable, 5 matches

[17934] doi:10.1371/journal.pcbi.1013025 [paper, repository]

Meta-Reinforcement Learning reconciles surprise, value, and control in the anterior cingulate cortex.

Journal: PLoS computational biology

Authors' code: AL458/RML-CogControl (GPL-3.0)

Status: code verified, 135 files readable, 3 matches

[17935] doi:10.1371/journal.pcbi.1013043 [paper, repository]

Repetitive training enhances the pattern recognition capability of cultured neural networks.

Journal: PLoS computational biology

Authors' code: yundid/pattern-recognition (no license)

Status: code verified, 146 files readable

[17936] doi:10.2147/ndt.s513992 [paper, repository]

Exploration of Epigenetic Mechanisms and Biomarkers Among Patients with Very-Late-Onset Schizophrenia-Like Psychosis.

Journal: Neuropsychiatric disease and treatment

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable

[17937] doi:10.3389/fpsyt.2025.1566155 [paper, data]

Genetic association between gene expression profiles in oligodendrocyte precursor cells and psychiatric disorders.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[17938] doi:10.3390/jcm14092888 [paper, repository]

Thalamic Microstructural Alterations as Revealed by the T1/T2 Ratio in Chronic Pain Patients.

Journal: Journal of clinical medicine

Authors' code: icometrix/dicom2nifti (MIT), juryxy/juspace (no license)

Status: code verified, 65 files readable, 2 matches

[17939] doi:10.7554/elife.100532 [paper, repository]

Re-focusing visual working memory during expected and unexpected memory tests.

Journal: eLife

Authors' code: OSF 5wexp (no license)

Status: code verified, 31 files readable, 3 matches

[17940] doi:10.7554/elife.102926 [paper, repository]

Auditory cortex learns to discriminate audiovisual cues through selective multisensory enhancement.

Journal: eLife

Authors' code: doi:10.17632/xm2gfng69b.1 (no license)

Status: code verified

[17941] doi:10.7554/elife.94999 [paper, repository]

Modeling collective behavior in groups of mice housed under semi-naturalistic conditions.

Journal: eLife

Authors' code: statbiophys/social_mice (GPL-3.0)

Status: code verified, 48 files readable, 3 matches

[17942] doi:10.7717/peerj-cs.2765 [paper, repository]

Epileptic seizures diagnosis and prognosis from EEG signals using heterogeneous graph neural network.

Journal: PeerJ. Computer science

Authors' code: supp:PMC12190335/peerj-cs-11-2765-s002.ipynb (no license), supp:PMC12190335/peerj-cs-11-2765-s003.ipynb (no license), supp:PMC12190335/peerj-cs-11-2765-s004.ipynb (no license), supp:PMC12190335/peerj-cs-11-2765-s005.ipynb (no license), supp:PMC12190335/peerj-cs-11-2765-s006.ipynb (no license), supp:PMC12190335/peerj-cs-11-2765-s007.ipynb (no license)

Status: code verified, 6 files readable, 8 matches

Monday, 21 April 2025 (28 papers)

[17943] doi:10.1016/j.fmre.2025.01.015 [paper, repository]

Seizure type classification algorithm based on multi-dimensional brain network feature selection.

Journal: Fundamental research

Authors' code: LIS-1217/MBNFS (no license)

Status: code verified, 13 files readable, 4 matches

[17944] doi:10.1016/j.isci.2025.112485 [paper]

MeCP2 prevents against sustained ketamine-induced synaptic depression at inhibitory synapses.

Journal: iScience

Status: code on request

[17945] doi:10.1016/j.isci.2025.112489 [paper, repository]

All active hippocampal pyramidal cells are place cells.

Journal: iScience

Authors' code: zivlab/all-cells-place-cells (no license), Zenodo 7635972 (other-open)

Status: code verified, 24 files readable, 2 matches

[17946] doi:10.1017/s0033291725000868 [paper, repository]

Alterations in gray matter volume and associated transcriptomics after electroconvulsive therapy in major depressive disorder.

Journal: Psychological medicine

Authors' code: frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 7 files readable

[17947] doi:10.1038/s41467-025-58874-4 [paper, repository]

Deconvolution of cell types and states in spatial multiomics utilizing TACIT.

Journal: Nature communications

Authors' code: nolanlab/CellVisionSegmenter (MIT), huynhkl953/TACIT (CC-BY-NC-4.0), Zenodo 14969010 (no license)

Status: code verified, 52 files readable, 18 matches

[17948] doi:10.1038/s41531-025-00930-3 [paper, repository]

Microstructure is associated with motor outcomes following Deep Brain Stimulation in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: dicemt/DTI-NODDI (AGPL-3.0)

Status: code verified, 5 files readable

[17949] doi:10.1038/s41593-025-01933-2 [paper, repository]

Integrated analysis of molecular atlases unveils modules driving developmental cell subtype specification in the human cortex.

Journal: Nature neuroscience

Authors' code: khodosevichlab/Epilepsy19 (MIT), BhaduriLab/dev-ctx-meta-atlas (MIT)

Status: code verified, 44 files readable, 9 matches

[17950] doi:10.1038/s41593-025-01942-1 [paper]

Dynamics of glia and neurons regulate homeostatic rest, sleep and feeding behavior in Drosophila.

Journal: Nature neuroscience

Status: code on request

[17951] doi:10.1038/s41593-025-01943-0 [paper, repository]

Autism-related traits in myotonic dystrophy type 1 model mice are due to MBNL sequestration and RNA mis-splicing of autism-risk genes.

Journal: Nature neuroscience

Authors' code: mahreenkn/DM1-Autism-RNABinding (no license)

Status: code verified, 3 files readable, 2 matches

[17952] doi:10.1038/s41598-025-96634-y [paper, repository]

A segment-based framework for explainability in animal affective computing.

Journal: Scientific reports

Authors' code: talibosh/segment_based_exp (no license)

Status: code verified, 29 files readable, 5 matches

[17953] doi:10.1038/s41598-025-98900-5 [paper]

CFTR acts as a potential therapeutic target for attention deficit-hyperactivity disorder.

Journal: Scientific reports

Status: data only

[17954] doi:10.1101/2025.04.17.649364 [paper, data]

Feature-dependent decorrelation of sound representations across the auditory pathway

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[17955] doi:10.1101/2025.04.17.649404 [paper, repository]

All spectral frequencies of neural activity reveal semantic representation in the human anterior ventral temporal cortex

Journal: bioRxiv (preprint)

Authors' code: slfrisby/ECoG_LASSO (no license), eeglab.org (no license)

Status: code verified, 2,000 files readable, 6 matches

[17956] doi:10.1101/2025.04.20.649707 [paper, repository]

Evolution of the cellular landscape in mammalian striatum

Journal: bioRxiv (preprint)

Authors' code: konopkalab/Comparative_striatum (MIT)

Status: code verified, 86 files readable, 17 matches

[17957] doi:10.1177/03000605251330578 [paper, repository]

Artificial intelligence-powered four-fold upscaling of human brain synthetic metabolite maps.

Journal: The Journal of international medical research

Authors' code: MorEsm/SR-MRSI (no license)

Status: code verified, 4 files readable, 4 matches

[17958] doi:10.1177/13872877251331222 [paper, repository]

A computational ontology framework for the synthesis of multi-level pathology reports from brain MRI scans.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: martindyrba/CompOntoVisFramework (MIT)

Status: code verified, 6 files readable, 9 matches

[17959] doi:10.1186/s40478-025-02002-2 [paper, data]

Neutrophil infiltration and microglial shifts in sepsis induced preterm brain injury: pathological insights.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[17960] doi:10.1186/s42238-025-00277-9 [paper, data]

Effect of cannabinoids on glutamate levels in the human brain: a systematic review and meta-analysis.

Journal: Journal of cannabis research

Status: data only, 1 dataset cited

[17961] doi:10.1371/journal.pcbi.1011909 [paper, repository]

A new paradigm considering multicellular adhesion, repulsion and attraction represent diverse cellular tile patterns.

Journal: PLoS computational biology

Authors' code: Zenodo 14617244 (CC-BY-4.0)

Status: code verified, 6 files readable

[17962] doi:10.1371/journal.pcbi.1012971 [paper, repository]

Temporal resolution of spike coding in feedforward networks with signal convergence and divergence.

Journal: PLoS computational biology

Authors' code: HChoiLab/SpikeCoding (no license)

Status: code verified, 74 files readable, 6 matches

[17963] doi:10.1371/journal.pcbi.1012990 [paper, repository]

Statistical signature of subtle behavioral changes in large-scale assays.

Journal: PLoS computational biology

Authors' code: DecBayComp/Detecting_subtle_behavioural_changes (no license), Zenodo 14674576 (CC-BY-4.0), Zenodo 14674575 (CC-BY-4.0), sourceforge.net/mwt (no license)

Status: code verified, 207 files readable, 8 matches

[17964] doi:10.1371/journal.pcbi.1013047 [paper, repository]

Theory of axo-axonic inhibition.

Journal: PLoS computational biology

Authors' code: romainbrette/theory-of-axoaxonic-inhibition (GPL-3.0)

Status: code verified, 27 files readable, 1 match

[17965] doi:10.17912/micropub.biology.001574 [paper, data]

Transcriptomic Analysis of CAD Cell Differentiation.

Journal: microPublication biology

Status: data only, 1 dataset cited

[17966] doi:10.21203/rs.3.rs-6081416/v1 [paper, repository]

Cryo-correlative light and electron tomography of dopaminergic axonal varicosities reveals non-synaptic modulation of cortico-striatal synapses

Journal: Research Square (preprint)

Authors' code: vladanl/Pyto (GPL-3.0)

Status: code verified, 359 files readable, 5 matches

[17967] doi:10.3390/brainsci15040423 [paper, data]

Altering Temporal Dynamics of Sleepiness and Mood During Sleep Deprivation: Evidence from Resting-State EEG Microstates.

Journal: Brain sciences

Status: data only, 1 dataset cited

[17968] doi:10.3758/s13428-025-02671-w [paper, data]

Interrelationships between sleep quality, circadian phase and rapid eye movement sleep: Deriving chronotype from sleep architecture.

Journal: Behavior research methods

Status: data only, 1 dataset cited

[17969] doi:10.7150/thno.102752 [paper, data]

Investigating post-infection anxiety- and depression-like behaviors in a SARS-CoV-2 mouse model.

Journal: Theranostics

Status: data only, 1 dataset cited

[17970] doi:10.7717/peerj-cs.2844 [paper, repository]

Towards efficient glaucoma screening with modular convolution-involution cascade architecture.

Journal: PeerJ. Computer science

Authors' code: supp:PMC12192679/peerj-cs-11-2844-s001.py (no license), supp:PMC12192679/peerj-cs-11-2844-s002.py (no license)

Status: code verified, 2 files readable, 3 matches

Sunday, 20 April 2025 (7 papers)

[17971] doi:10.1016/j.celrep.2025.115597 [paper]

Requirements for the neurodevelopmental disorder-associated gene ZNF292 in human cortical interneuron development and function.

Journal: Cell reports

Status: data only

[17972] doi:10.1038/s41467-025-58494-y [paper, data]

Targeting CD38 immunometabolic checkpoint improves metabolic fitness and cognition in a mouse model of Alzheimer's disease.

Journal: Nature communications

Status: data only, 2 datasets cited

[17973] doi:10.1038/s41531-025-00936-x [paper]

A high-fidelity microfluidic platform reveals retrograde propagation as the main mechanism of α-Synuclein spread in human neurons.

Journal: NPJ Parkinson's disease

Status: code on request

[17974] doi:10.1038/s41598-025-97651-7 [paper, repository]

Simultaneously capturing excessive variations and smooth dynamics of the underlying neural activity using spatiotemporal basis expansion and multisubject fMRI data.

Journal: Scientific reports

Authors' code: usmankhalid06/jasdl (no license)

Status: code verified, 29 files readable, 3 matches

[17975] doi:10.1101/2025.04.16.648964 [paper, repository]

Distinct impacts of sodium channel blockers on the strength-duration properties of human motor cortex neurones

Journal: bioRxiv (preprint)

Authors' code: OSF d6vf2 (no license)

Status: code verified, 10 files readable, 3 matches

[17976] doi:10.1101/2025.04.16.649072 [paper, repository]

Precon_all: A species-agnostic automated pipeline for non-human cortical surface reconstruction

Journal: bioRxiv (preprint)

Authors' code: neurabenn/precon_all (MIT)

Status: code verified, 26 files readable, 9 matches

[17977] doi:10.1186/s12974-025-03419-1 [paper, repository]

Probiotic treatment induces sex-dependent neuroprotection and gut microbiome shifts after traumatic brain injury.

Journal: Journal of neuroinflammation

Authors' code: villapollab.github.io/pan_probiotic_tbi (no license)

Status: code verified

Saturday, 19 April 2025 (19 papers)

[17978] doi:10.1016/j.nbd.2025.106914 [paper, repository]

Intersecting impact of CAG repeat and huntingtin knockout in stem cell-derived cortical neurons.

Journal: Neurobiology of disease

Authors' code: finkbeiner-lab/FeatureAnalysis (no license)

Status: code verified, 4 files readable, 8 matches

[17979] doi:10.1016/j.omtm.2025.101476 [paper]

Harnessing synaptic vesicle release and recycling with antibody shuttle for targeted delivery of therapeutics to neurons.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[17980] doi:10.1038/s41386-025-02108-0 [paper]

Ketamine-induced static and dynamic functional connectivity changes are modulated by opioid receptors and biological sex in rats.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: code on request

[17981] doi:10.1038/s41398-025-03366-8 [paper, repository]

Exon-variant interplay and multi-modal evidence identify endocrine dysregulation in severe psychiatric disorders impacting excitatory neurons.

Journal: Translational psychiatry

Authors' code: cellmapslab/PostmortemBrainAnalysis (no license)

Status: dead link

[17982] doi:10.1038/s41398-025-03375-7 [paper]

Mesoscale brain-wide fluctuation analysis: revealing ketamine's rapid antidepressant across multiple brain regions.

Journal: Translational psychiatry

Status: code on request

[17983] doi:10.1038/s41467-025-59113-6 [paper, repository]

Deep brain stimulation alleviates Parkinsonian motor deficits through desynchronizing GABA release in mice.

Journal: Nature communications

Authors' code: ZongyiXu-a/STN-DBS-analysis (Apache-2.0)

Status: code verified, 6 files readable, 1 match

[17984] doi:10.1038/s41597-025-04741-2 [paper, repository]

VocalMind: A Stereotactic EEG Dataset for Vocalized, Mimed, and Imagined Speech in Tonal Language.

Journal: Scientific data

Authors' code: tianyu-h42/sEEG-Processing-SpeechDecoding (Apache-2.0)

Status: code verified, 37 files readable, 8 matches

[17985] doi:10.1038/s41597-025-04843-x [paper, repository]

A multi-subject and multi-session EEG dataset for modelling human visual object recognition.

Journal: Scientific data

Authors' code: xuesn/EEGDataset (no license)

Status: code verified, 16 files readable, 11 matches

[17986] doi:10.1038/s41597-025-05017-5 [paper, repository]

A naturalistic fMRI dataset in response to public speaking.

Journal: Scientific data

Authors' code: cognomicslab/naturalistic_stimuli (no license)

Status: code verified, 4 files readable

[17987] doi:10.1038/s41598-025-97777-8 [paper, repository]

A brain-inspired sequence learning model based on a logic.

Journal: Scientific reports

Authors' code: bowen-xu/SeL-NAL (MIT)

Status: code verified, 27 files readable

[17988] doi:10.1080/15592294.2025.2493865 [paper, data]

Acetaldehyde-driven mRNA methylation and expression changes in ethanol-metabolizing enzyme genes.

Journal: Epigenetics

Status: data only, 1 dataset cited

[17989] doi:10.1093/braincomms/fcaf157 [paper, repository]

Low-grade gliomas do not grow along white matter tracts: evidence from quantitative imaging.

Journal: Brain communications

Authors' code: PRauch1/Vector-Field (no license)

Status: empty repository

[17990] doi:10.1101/2025.04.14.647517 [paper, repository]

Three cortical streams for somatosensory information processing

Journal: bioRxiv (preprint)

Authors' code: MeiqiNiu/somatosensory_stream (no license)

Status: dead link

[17991] doi:10.1101/2025.04.14.648706 [paper, repository]

Predictive distractor processing relies on integrated proactive and reactive attentional mechanisms

Journal: bioRxiv (preprint)

Authors' code: oscfer88/dsl_rift (BSD-3-Clause), oscfer88/dSL_RIFT_MNE (no license)

Status: code verified, 10 files readable, 1 match

[17992] doi:10.1101/2025.04.15.648728 [paper, repository]

Hemispheric Asymmetry of Tau Pathology is Related to Asymmetric Amyloid Deposition in Alzheimer’s Disease

Journal: bioRxiv (preprint)

Authors' code: teanijarv/phd-neurodegeneration-imaging (GPL-3.0), Zenodo 6834519 (Apache-2.0), nipy/nipype (Apache-2.0)

Status: code verified, 2,815 files readable, 27 matches

[17993] doi:10.1101/2025.04.15.648905 [paper]

Targeted degradation of α-synuclein prevents PFF-induced aggregation

Journal: bioRxiv (preprint)

Status: code on request

[17994] doi:10.1101/2025.04.16.25325971 [paper, repository]

Cortical differences across psychiatric disorders and associated common and rare genetic variants

Journal: medRxiv (preprint)

Authors' code: MartineauJeanLouis/MIND-GENESPARALLELCNV (no license), kkumar-iitkgp/ct_sa_across_disorders_and_variants (MIT)

Status: code verified, 23 files readable, 4 matches

[17995] doi:10.3390/diagnostics15081041 [paper, data]

Fractal-Based Architectures with Skip Connections and Attention Mechanism for Improved Segmentation of MS Lesions in Cervical Spinal Cord.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[17996] doi:10.5498/wjp.v15.i4.104042 [paper, data]

Digital cognitive behavioral therapy as a novel treatment for insomnia.

Journal: World journal of psychiatry

Status: data only, 1 dataset cited

Friday, 18 April 2025 (27 papers)

[17997] doi:10.1002/glia.70024 [paper, data]

The Aquaporin-4 Expression and Localization in the Olfactory Epithelium Modulate the Odorant-Evoked Responses and Olfactory-Driven Behavior.

Journal: Glia

Status: data only, 1 dataset cited

[17998] doi:10.1007/s00262-025-04034-y [paper, data]

Identification of SURF4 and RALGAPA1 as promising therapeutic targets in glioblastoma and pan-cancer through integrative multi-omics, CRISPR-Cas9 screening and prognostic meta-analysis.

Journal: Cancer immunology, immunotherapy : CII

Status: data only, 3 datasets cited

[17999] doi:10.1016/j.cub.2025.03.081 [paper, data]

Representations of personally familiar voices are better resolved in the brain.

Journal: Current biology : CB

Status: data only, 1 dataset cited

[18000] doi:10.1016/j.nicl.2025.103790 [paper, repository]

Individualized lesion-symptom mapping using explainable artificial intelligence for the cognitive impact of white matter hyperintensities.

Journal: NeuroImage. Clinical

Authors' code: meta-vci-map/lsm (Apache-2.0)

Status: code verified, 3 files readable

[18001] doi:10.1016/j.ymthe.2025.04.020 [paper, data]

In vivo programming of adult pericytes aids axon regeneration by providing cellular bridges for SCI repair.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: data only, 1 dataset cited

[18002] doi:10.1038/s41398-025-03374-8 [paper]

The long-term correlates of developmental stress on whole-brain functional connectivity during emotion regulation.

Journal: Translational psychiatry

Status: code on request

[18003] doi:10.1038/s41467-025-58778-3 [paper, repository]

AAV vectors trigger DNA damage response-dependent pro-inflammatory signalling in human iPSC-derived CNS models and mouse brain.

Journal: Nature communications

Authors' code: bioinfotiget.it/gitlab/custom (no license)

Status: code verified

[18004] doi:10.1038/s41467-025-59042-4 [paper, data]

A microengineered 3D human neurovascular unit model to probe the neuropathogenesis of herpes simplex encephalitis.

Journal: Nature communications

Status: data only, 1 dataset cited

[18005] doi:10.1038/s41467-025-59046-0 [paper, repository]

Molecular mechanism establishing the OFF pathway in vision.

Journal: Nature communications

Authors' code: kerschensteinerd/soto_natcommun_2025 (no license), Zenodo 14975224 (CC-BY-4.0)

Status: code verified, 19 files readable

[18006] doi:10.1038/s41551-025-01378-9 [paper, repository]

High-resolution prosthetic hearing with a soft auditory brainstem implant in macaques.

Journal: Nature biomedical engineering

Authors' code: Zenodo 14865857 (CC-BY-4.0)

Status: code verified

[18007] doi:10.1038/s41598-025-96895-7 [paper, data]

Understanding the sport viewership experience using functional near-infrared spectroscopy.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18008] doi:10.1038/s41598-025-97252-4 [paper, repository]

Validity of tremor analysis using smartphone compatible computer vision frameworks.

Journal: Scientific reports

Authors' code: JuliusWelzel/TremorComputerVision (no license)

Status: code verified, 17 files readable, 2 matches

[18009] doi:10.1038/s41598-025-97840-4 [paper, repository]

Direct and averted gaze modulate the event-related brain responses to social exclusion signals.

Journal: Scientific reports

Authors' code: OSF wkrac (no license)

Status: code found, still to be checked

[18010] doi:10.1038/s42003-025-08078-9 [paper, repository]

Network control energy reductions under DMT relate to serotonin receptors, signal diversity, and subjective experience.

Journal: Communications biology

Authors' code: singlesp/DMT_NCT (no license), Zenodo 15177511 (CC-BY-4.0)

Status: code verified, 45 files readable, 4 matches

[18011] doi:10.1073/pnas.2405706122 [paper, repository]

Mapping global brain reconfigurations following local targeted manipulations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: grabuffo/brain-reconfigurations-PNAS-2025 (CC-BY-NC-4.0)

Status: code verified, 27 files readable, 4 matches

[18012] doi:10.1073/pnas.2415425122 [paper, repository]

Mapping the developmental profile of ventricular zone-derived neurons in the human cerebellum.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: anderswe/vz_derivatives (MIT)

Status: code verified, 13 files readable, 12 matches

[18013] doi:10.1093/bioadv/vbaf068 [paper, repository]

HORNET: tools to find genes with causal evidence and their regulatory networks using eQTLs.

Journal: Bioinformatics advances

Authors' code: noahlorinczcomi/HORNET (no license)

Status: code verified, 15 files readable, 8 matches

[18014] doi:10.1093/braincomms/fcaf152 [paper, repository]

Brain age in multiple sclerosis: a study with deep learning and traditional machine learning.

Journal: Brain communications

Authors' code: tobias-kaufmann/brainage (no license), estenhl/pyment-public (CC-BY-NC-4.0), Laroz220/BSL (GPL-3.0)

Status: code verified, 122 files readable, 5 matches

[18015] doi:10.1093/braincomms/fcaf153 [paper, repository]

Ongoing loss of viable neurons for weeks after mild hypoxia-ischaemia.

Journal: Brain communications

Authors' code: MGH-Epilepsy-Research-Group (no license)

Status: code verified

[18016] doi:10.1126/sciadv.adu0975 [paper, data]

Hippocampal perineuronal net degradation identifies prefrontal and striatal circuits involved in schizophrenia-like changes in marmosets.

Journal: Science advances

Status: data only, 1 dataset cited

[18017] doi:10.1126/science.adq2084 [paper, repository]

Deep-tissue transcriptomics and subcellular imaging at high spatial resolution.

Journal: Science (New York, N.Y.)

Authors' code: liulabspatial/cycleHCR (BSD-3-Clause), liulabspatial/CycleHCR-Pipeline (BSD-3-Clause), Zenodo 14780420 (CC-BY-4.0)

Status: code verified, 86 files readable

[18018] doi:10.1186/s12974-025-03437-z [paper, data]

A molecular brain atlas reveals cellular shifts during the repair phase of stroke.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[18019] doi:10.1186/s12974-025-03441-3 [paper, data]

Phosphatidate phosphatase Lipin1 alters mitochondria-associated endoplasmic reticulum membranes (MAMs) homeostasis: effects which contribute to the development of diabetic encephalopathy.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[18020] doi:10.1186/s13293-025-00709-4 [paper, repository]

Differential brainstem connectivity according to sex and menopausal status in healthy male and female individuals.

Journal: Biology of sex differences

Authors' code: DCAN-Labs/abcd-hcp-pipeline (BSD-3-Clause)

Status: code verified, 8 files readable, 4 matches

[18021] doi:10.1364/boe.551862 [paper, repository]

Whole retina light-evoked optoretinography (ORG) under different retina hydration levels: modeling of Bruch's membrane ORGs.

Journal: Biomedical optics express

Authors' code: figshare 28008944 (CC-BY-4.0)

Status: code verified

[18022] doi:10.1530/rep-24-0378 [paper, data]

Impact of intraamniotic inflammation on tryptophan metabolism in the placenta-fetal brain axis in rats.

Journal: Reproduction (Cambridge, England)

Status: data only, 2 datasets cited

[18023] doi:10.3390/e27040436 [paper, repository]

Retina-Inspired Models Enhance Visual Saliency Prediction.

Journal: Entropy (Basel, Switzerland)

Authors' code: iCGY96/Retina-VGG (MIT)

Status: code verified, 10 files readable, 7 matches

Thursday, 17 April 2025 (44 papers)

[18024] doi:10.1002/aur.70042 [paper, repository]

Multisensory Integration of Naturalistic Speech and Gestures in Autistic Adults.

Journal: Autism research : official journal of the International Society for Autism Research

Authors' code: OSF 2b6s3 (no license), OSF 2ya75 (no license)

Status: code verified, 4 files readable, 7 matches

[18025] doi:10.1007/s10827-025-00902-9 [paper, repository]

Axon initial segment plasticity caused by auditory deprivation degrades time difference sensitivity in a model of neural responses to cochlear implants.

Journal: Journal of computational neuroscience

Authors' code: jhgoldwyn/auditoryDeprivedMSO (no license), jhgoldwyn/MSOwithAISplasticity (GPL-3.0)

Status: code verified, 5 files readable, 5 matches

[18026] doi:10.1016/j.bbih.2025.100992 [paper]

Acute stress-induced alterations in short-chain fatty acids: Implications for the intestinal and blood brain barriers.

Journal: Brain, behavior, & immunity - health

Status: code on request

[18027] doi:10.1016/j.bpsgos.2025.100506 [paper, repository]

Transdiagnostic Symptom Domains Have Distinct Patterns of Association With Head Motion During Multimodal Imaging in Children.

Journal: Biological psychiatry global open science

Authors' code: EmotionNeuroscienceLab (no license)

Status: code verified

[18028] doi:10.1016/j.brs.2025.04.012 [paper, repository]

Accelerated iTBS-Induced changes in resting-state functional connectivity correspond with cognitive improvement in amnestic MCI.

Journal: Brain stimulation

Authors' code: brain-connectivity-toolbox.net (no license)

Status: code verified

[18029] doi:10.1016/j.isci.2025.112461 [paper, repository]

Comprehensive analysis across <i>SMN2</i> excludes DNA methylation as an epigenetic biomarker for spinal muscular atrophy.

Journal: iScience

Authors' code: ghaaften/sma_dna_methylation (no license), UMCUGenetics/HapSMA (MIT), arq5x/bedtools2 (MIT)

Status: code verified, 470 files readable, 9 matches

[18030] doi:10.1016/j.jare.2025.04.025 [paper, repository]

Reshaping the gut microbiota: A novel oppinion of Eucommiae cortex polysaccharide alleviate learning and memory impairments in Alzheimer's disease.

Journal: Journal of advanced research

Authors' code: junjunlab/GseaVis (other), gitee.com/zyk980410/r-code-for-analyse (no license)

Status: code verified, 17 files readable

[18031] doi:10.1016/j.jcmgh.2025.101518 [paper, data]

Decreasing Proprotein Convertase 5 Causes Hirschsprung's Disease by Disrupting Neural Crest Cell Migration.

Journal: Cellular and molecular gastroenterology and hepatology

Status: data only, 1 dataset cited

[18032] doi:10.1016/j.neuroimage.2025.121219 [paper, repository]

Spatiotemporal processing of real faces is modified by visual sensing.

Journal: NeuroImage

Authors' code: doi:10.5061/dryad.rv15dv4j4 (no license)

Status: code verified

[18033] doi:10.1038/s41366-025-01776-8 [paper, data]

Consumption of a diet high in fat and sugar is associated with worse spatial navigation ability in a virtual environment.

Journal: International journal of obesity (2005)

Status: data only, 1 dataset cited

[18034] doi:10.1038/s41380-025-03028-7 [paper]

Animal studies reveal downregulation of the Beclin-1 autophagy pathway as shared mechanism in Autism Spectrum Disorder: a systematic review and meta-analysis.

Journal: Molecular psychiatry

Status: code on request

[18035] doi:10.1038/s41420-025-02482-0 [paper, data]

The E3 ligase c-Cbl modulates microglial phenotypes and contributes to Parkinson's disease pathology.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[18036] doi:10.1038/s41467-025-58891-3 [paper, repository]

Asynchronous development of the mouse auditory cortex is driven by hemispheric identity and sex.

Journal: Nature communications

Authors' code: cortex-lab/KiloSort (GPL-2.0)

Status: code verified, 67 files readable, 2 matches

[18037] doi:10.1038/s41537-025-00609-x [paper, repository]

Abnormal eye movement, brain regional homogeneity in schizophrenia and clinical high-risk individuals and their associated gene expression profiles.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: rmarkello/abagen (BSD-3-Clause), Tuteja-Lab/TissueEnrich (other)

Status: code verified, 63 files readable, 3 matches

[18038] doi:10.1038/s41540-025-00509-x [paper, repository]

MIRO1 mutation leads to metabolic maladaptation resulting in Parkinson's disease-associated dopaminergic neuron loss.

Journal: NPJ systems biology and applications

Authors' code: sysbiolux/MidbrainOrganoid_Miro1_scMetabMod (GPL-3.0), gitlab.lcsb.uni.lu/dvb/zagare_2024 (Apache-2.0)

Status: code verified, 16 files readable, 6 matches

[18039] doi:10.1038/s41597-025-04995-w [paper, repository]

A simultaneous EEG and eye-tracking dataset for remote sensing object detection.

Journal: Scientific data

Authors' code: bing-1997/eeget_rsod (no license)

Status: code verified, 4 files readable, 1 match

[18040] doi:10.1038/s41598-025-96040-4 [paper]

Vocal and articulatory speech control deficits in individuals with post-stroke aphasia.

Journal: Scientific reports

Status: code on request

[18041] doi:10.1038/s41598-025-97695-9 [paper, data]

Virtual body continuity during action observation affects motor cortical excitability.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18042] doi:10.1038/s41598-025-98026-8 [paper, repository]

Neural mechanisms of lipreading in the Polish-speaking population: effects of linguistic complexity and sex differences.

Journal: Scientific reports

Authors' code: OSF 6k74t (no license), colab.research.google.com/drive/1njwiwisgwb_uyu4bt0sddjldpdaetevw (no license)

Status: code verified, 1 file readable

[18043] doi:10.1073/pnas.2407626122 [paper, repository]

Inhibitory control explains locomotor statistics in walking <i>Drosophila</i>.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: nagellab/Gattusoetal2025 (BSD-2-Clause)

Status: code verified, 30 files readable, 4 matches

[18044] doi:10.1073/pnas.2415929122 [paper, data]

Sleep homeostasis in lizards and the role of the cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[18045] doi:10.1073/pnas.2423628122 [paper, data]

Elevated brain manganese induces motor disease by upregulating the kynurenine pathway of tryptophan metabolism.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[18046] doi:10.1093/braincomms/fcaf125 [paper, data]

Elevated circulating cell-free mitochondrial DNA level in cerebrospinal fluid of narcolepsy type 1.

Journal: Brain communications

Status: data only, 1 dataset cited

[18047] doi:10.1093/braincomms/fcaf150 [paper]

Cross brain reshaping in congenital visual or hearing impairment: triple-network dysfunction.

Journal: Brain communications

Status: code on request

[18048] doi:10.1161/strokeaha.124.050171 [paper, repository]

Blood-Brain Barrier Leakage in the Penumbra Is Associated With Infarction on Follow-Up Imaging in Acute Ischemic Stroke.

Journal: Stroke

Authors' code: csi-hamburg/csiframe (MIT), felenae/2024_bbb_wakeup (no license)

Status: code verified, 87 files readable, 11 matches

[18049] doi:10.1162/imag_a_00539 [paper, repository]

Are you talking to me? How the choice of speech register impacts listeners' hierarchical encoding of speech.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF ba3p4 (no license)

Status: code verified, 3 files readable, 7 matches

[18050] doi:10.1162/imag_a_00540 [paper, repository]

Identifying dynamic reproducible brain states using a predictive modelling approach.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: YaleMRRC/dFCAnalysis (no license)

Status: code verified, 6 files readable, 1 match

[18051] doi:10.1162/imag_a_00542 [paper, repository]

Development of the arcuate fasciculus is linked to learning gains in reading.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: earoy/longitudinal_read_wm_replication (no license)

Status: code verified, 8 files readable, 2 matches

[18052] doi:10.1177/00368504251336080 [paper, data]

Sex differences in brain iron deposition and microglial ferritin in Alzheimer's disease.

Journal: Science progress

Status: data only, 1 dataset cited

[18053] doi:10.1186/s12974-025-03436-0 [paper, data]

Age-related meningeal extracellular matrix remodeling compromises CNS lymphatic function.

Journal: Journal of neuroinflammation

Status: code on request, 1 dataset cited

[18054] doi:10.1186/s13059-025-03556-z [paper, repository]

Hmgb2 improves astrocyte to neuron conversion by increasing the chromatin accessibility of genes associated with neuronal maturation in a proneuronal factor-dependent manner.

Journal: Genome biology

Authors' code: doi:10.6084/m9.figshare28547228.v1 (no license)

Status: dead link

[18055] doi:10.1371/journal.pbio.3003118 [paper, data]

Neuronal responses in the human primary motor cortex coincide with the subjective onset of movement intention in brain-machine interface-mediated actions.

Journal: PLoS biology

Status: data only, 1 dataset cited

[18056] doi:10.2196/68204 [paper, repository]

Consumer-Grade Neurofeedback With Mindfulness Meditation: Meta-Analysis.

Journal: Journal of medical Internet research

Authors' code: OSF 8fz73 (no license), OSF vc9tr (no license)

Status: code verified, 4 files readable, 3 matches

[18057] doi:10.3389/fcell.2025.1566137 [paper, repository]

Critical contributions of neuronal subtypes to pediatric drug-resistant focal dysplasia.

Journal: Frontiers in cell and developmental biology

Authors' code: singleron-RD/CeleScope (MIT)

Status: code verified, 181 files readable, 5 matches

[18058] doi:10.3389/fimmu.2025.1531930 [paper]

Comprehensive molecular analyses of an autoimmune-related gene predictive model and immune infiltrations using machine learning methods in intracranial aneurysma.

Journal: Frontiers in immunology

Status: data only

[18059] doi:10.3389/fnins.2025.1409107 [paper, repository]

Analysis of clinical anatomical correlates of motor deficits in stroke by multivariate lesion inference based on game theory.

Journal: Frontiers in neuroscience

Authors' code: ShreyDixit/MSA-App (no license)

Status: code verified, 11 files readable, 1 match

[18060] doi:10.3389/fped.2025.1514447 [paper, data]

Research advancements in the Use of artificial intelligence for prenatal diagnosis of neural tube defects.

Journal: Frontiers in pediatrics

Status: data only, 1 dataset cited

[18061] doi:10.3390/brainsci15040406 [paper, data]

Adrenergic Modulation of Cortical Gain and Sensory Processing in the Mouse Visual Cortex.

Journal: Brain sciences

Status: data only, 1 dataset cited

[18062] doi:10.7554/elife.101780 [paper, repository]

A general framework for characterizing optimal communication in brain networks.

Journal: eLife

Authors' code: kuffmode/OI-and-CMs (MIT), kuffmode/yanat (MIT), Zenodo 5636435 (MIT), kuffmode/msa (MIT)

Status: code verified, 33 files readable, 6 matches

[18063] doi:10.7554/elife.104764 [paper, data]

Cell type-specific driver lines targeting the <i>Drosophila</i> central complex and their use to investigate neuropeptide expression and sleep regulation.

Journal: eLife

Status: data only, 1 dataset cited

[18064] doi:10.7554/elife.106256 [paper, data]

Cholesterol taste avoidance in <i>Drosophila melanogaster</i>.

Journal: eLife

Status: data only, 1 dataset cited

[18065] doi:10.7554/elife.83865 [paper, repository]

Modulation of brain signal variability in visual cortex reflects aging, GABA, and behavior.

Journal: eLife

Authors' code: maxlab.neuro.georgetown.edu/hmax.html (no license), umich-tpolk-lab/DynamicRecoveryPaper (no license)

Status: code verified, 58 files readable, 2 matches

[18066] doi:10.7554/elife.94578 [paper, repository]

Shaping the physical world to our ends through the left PF technical-cognition area.

Journal: eLife

Authors' code: OSF hfrmu (no license)

Status: code verified, 2 files readable

[18067] doi:10.7554/elife.99258 [paper, data]

TRPγ regulates lipid metabolism through <i>Dh44</i> neuroendocrine cells.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 16 April 2025 (41 papers)

[18068] doi:10.1007/s10803-025-06825-9 [paper, data]

Attention to Social and Non-Social Stimuli in a Continuous Performance Test in Autistic and Typically Developed Participants: An ERP Study.

Journal: Journal of autism and developmental disorders

Status: data only, 1 dataset cited

[18069] doi:10.1007/s11481-025-10186-6 [paper, repository]

Abscisic Acid Rescues Behavior in Adult Female Mice in Attention Deficit Disorder with Hyperactivity Model of Dopamine Depletion by Regulating Microglia and Increasing Vesicular GABA Transporter Expression.

Journal: Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology

Authors' code: SandraSSB/MACROglia_cell-morphology-analysis (CC-BY-4.0)

Status: empty repository, 2 files readable

[18070] doi:10.1016/j.isci.2025.112443 [paper, repository]

Control of odor sensation by light and cryptochrome in the <i>Drosophila</i> antenna.

Journal: iScience

Authors' code: doi:10.5061/dryad.ffbg79d5n (no license), Zenodo 15042942 (MIT)

Status: code verified, 2 files readable

[18071] doi:10.1016/j.isci.2025.112446 [paper, data]

Enhanced differentiation of neural progenitor cells in Alzheimer's disease into vulnerable immature neurons.

Journal: iScience

Status: code on request, 2 datasets cited

[18072] doi:10.1016/j.isci.2025.112456 [paper]

Melanocortin 4 receptor-expressing neurons in the lateral stripe of the striatum regulate affect and motor control.

Journal: iScience

Status: code on request

[18073] doi:10.1016/j.molpha.2025.100039 [paper, data]

Fat traffic control: S-acylation in axonal transport.

Journal: Molecular pharmacology

Status: data only, 1 dataset cited

[18074] doi:10.1016/j.neuroimage.2025.121224 [paper, repository]

Shared subcortical arousal systems across sensory modalities during transient modulation of attention.

Journal: NeuroImage

Authors' code: BlumenfeldLab/Khalaf-et-al_2025 (no license)

Status: empty repository

[18075] doi:10.1021/acs.langmuir.4c05034 [paper, data]

Interfacial Interactions between Neural Tracing Lectin-Gold Nanoparticle Conjugate and Cell Membrane Glycoproteins.

Journal: Langmuir : the ACS journal of surfaces and colloids

Status: data only, 1 dataset cited

[18076] doi:10.1038/s41380-025-02998-y [paper]

Neocortical tau propagation is a mediator of clinical heterogeneity in Alzheimer's disease.

Journal: Molecular psychiatry

Status: code on request

[18077] doi:10.1038/s41398-025-03348-w [paper, repository]

Identification of genetic architecture shared between schizophrenia and Alzheimer's disease.

Journal: Translational psychiatry

Authors' code: alexploner/cfdr.pleio (GPL-3.0)

Status: code verified, 9 files readable

[18078] doi:10.1038/s41467-025-58626-4 [paper, repository]

Integrating physical units into high-performance AI-driven scientific computing.

Journal: Nature communications

Authors' code: chaoming0625/diffrax (Apache-2.0), chaobrain/saiunit (Apache-2.0), saiunit.readthedocs.io (no license), chaobrain/saiunit-experiments (no license), Zenodo 14970038 (LGPL-2.1), Zenodo 14970099 (CC-BY-4.0), Zenodo 14970016 (Apache-2.0), Zenodo 14970030 (Apache-2.0), Zenodo 14970108 (CC-BY-4.0), chaobrain/brainstate (Apache-2.0), chaobrain/brainunit (Apache-2.0)

Status: code verified, 1,056 files readable, 16 matches

[18079] doi:10.1038/s41467-025-58683-9 [paper, repository]

Pre-movement sensorimotor oscillations shape the sense of agency by gating cortical connectivity.

Journal: Nature communications

Authors' code: dbdq/neurodecode (gnu), OSF 4w3t6 (no license)

Status: code verified, 79 files readable, 3 matches

[18080] doi:10.1038/s41467-025-58717-2 [paper, repository]

Thalamic feedback shapes brain responses evoked by cortical stimulation in mice and humans.

Journal: Nature communications

Authors' code: bazhlab-ucsd/sleep-stage-transition (no license), figshare 28047749 (CC-BY-4.0), figshare 25595829 (CC-BY-4.0), figshare 25595871 (CC-BY-4.0), figshare 25773501 (CC-BY-4.0)

Status: code verified, 18 files readable, 2 matches

[18081] doi:10.1038/s41598-025-94672-0 [paper, repository]

Climate trauma from wildfire exposure impacts cognitive decision-making.

Journal: Scientific reports

Authors' code: jasonnan2/Automated-Analysis-of-EEG (MIT), Zenodo 2619955 (CC-BY-4.0)

Status: code verified, 21 files readable, 3 matches

[18082] doi:10.1038/s41598-025-95017-7 [paper]

Cortical thickness deviations as biomarker for subtyping and prognosis in pediatric brainstem tumors.

Journal: Scientific reports

Status: code on request

[18083] doi:10.1038/s41598-025-96538-x [paper]

Evaluating the effects of volume censoring on fetal functional connectivity.

Journal: Scientific reports

Status: code on request

[18084] doi:10.1038/s41598-025-97529-8 [paper, data]

Neuroticism modulates functional connectivity of the midcingulate cortex during emotional conflict.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18085] doi:10.1038/s41598-025-97804-8 [paper, data]

Multi-omics analysis reveals key immunogenic signatures induced by oncolytic Zika virus infection of paediatric brain tumour cells.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18086] doi:10.1038/s41598-025-97865-9 [paper, repository]

HOXD1 regulates neural crest cells differentiation and polycerate development in sheep.

Journal: Scientific reports

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[18087] doi:10.1038/s42003-025-08029-4 [paper, data]

Chromosome-level genome assembly reveals adaptive evolution of the invasive Amazon sailfin catfish (Pterygoplichthys pardalis).

Journal: Communications biology

Status: data only, 1 dataset cited

[18088] doi:10.1080/21505594.2025.2491635 [paper, data]

A small RNA from <i>Streptococcus suis</i> epidemic ST7 strain promotes bacterial survival in host blood and brain by enhancing oxidative stress resistance.

Journal: Virulence

Status: data only, 2 datasets cited

[18089] doi:10.1093/braincomms/fcaf146 [paper, repository]

Neuroimaging-based data-driven subtypes of spatiotemporal atrophy due to Parkinson's disease.

Journal: Brain communications

Authors' code: ucl-pond/pySuStaIn (MIT)

Status: code verified, 19 files readable, 3 matches

[18090] doi:10.1093/nc/niaf006 [paper, data]

Visual imagery of familiar people and places in category selective cortex.

Journal: Neuroscience of consciousness

Status: data only, 1 dataset cited

[18091] doi:10.1126/sciadv.ads0505 [paper, repository]

Amyotrophic lateral sclerosis and frontotemporal dementia mutation reduces endothelial TDP-43 and causes blood-brain barrier defects.

Journal: Science advances

Authors' code: pamurphyUCONN/2025_Cheemala (no license), Zenodo 14624581 (CC-BY-4.0)

Status: code verified, 4 files readable, 3 matches

[18092] doi:10.1126/sciadv.adu5829 [paper, data]

Food sensing controls <i>C. elegans</i> reproductive behavior by neuromodulatory disinhibition.

Journal: Science advances

Status: data only, 1 dataset cited

[18093] doi:10.1159/000545888 [paper, data]

Literature Review on Lesion-Symptom Mapping and Deep Brain Stimulation for Poststroke Spasticity: Restoring a Dysfunctional Network?

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[18094] doi:10.1161/jaha.124.039463 [paper, repository]

Hypothalamic Gliosis Is Associated With Multiple Cardiovascular Disease Risk Factors in the Framingham Heart Study.

Journal: Journal of the American Heart Association

Authors' code: framinghamheartstudy.org/fhs-for-researchers/research-application (no license)

Status: code verified

[18095] doi:10.1162/imag_a_00541 [paper, repository]

Dynamic medial parietal and hippocampal deactivations under DMT relate to sympathetic output and altered sense of time, space, and the self.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: mathworks.com/products/matlab.html (no license), lollopasquini/DMTsubstates (no license), timmer500/DMT_Imaging (no license)

Status: code verified, 12 files readable

[18096] doi:10.1186/s12885-025-14095-y [paper, data]

Novel insight of critical genes involved in breast cancer brain metastasis: evidence from a cross-tissue transcriptome association study and validation through external clinical cohorts.

Journal: BMC cancer

Status: data only, 1 dataset cited

[18097] doi:10.1242/jeb.250024 [paper, data]

Transcriptomic correlates of nutritional manipulation in a facultatively social bee.

Journal: The Journal of experimental biology

Status: data only, 2 datasets cited

[18098] doi:10.1371/journal.pone.0320952 [paper, data]

Social subordination is associated with better cognitive performance and higher theta coherence of the mPFC-vHPC circuit in male rats.

Journal: PloS one

Status: data only, 1 dataset cited

[18099] doi:10.21203/rs.3.rs-6297741/v1 [paper, data]

Testing for associations and interactions between APOE e4 genotype and lifestyle, with brain structural imaging phenotypes in UK Biobank

Journal: Research Square (preprint)

Status: data only, 1 dataset cited

[18100] doi:10.3389/fimmu.2025.1587009 [paper, data]

Multi-omics landscape of alternative splicing in diffuse midline glioma reveals immune- and neural-driven subtypes with implications for spliceosome-targeted therapy.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[18101] doi:10.3389/fmolb.2025.1581711 [paper, data]

Structure-guided virtual screening reveals phytoconstituents as potent cathepsin B inhibitors: Implications for cancer, traumatic brain injury, and Alzheimer's disease.

Journal: Frontiers in molecular biosciences

Status: data only, 1 dataset cited

[18102] doi:10.3389/fncom.2025.1569828 [paper, data]

Decentralized EEG-based detection of major depressive disorder via transformer architectures and split learning.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[18103] doi:10.3389/fnhum.2025.1543854 [paper]

Both k-core percolation and directed graph analysis revealed succession and transition of voxels' spatiotemporal progress on dynamic correlation resting-state fMRI.

Journal: Frontiers in human neuroscience

Status: code on request

[18104] doi:10.3389/fnins.2025.1577029 [paper, data]

Deep linear matrix approximate reconstruction with integrated BOLD signal denoising reveals reproducible hierarchical brain connectivity networks from multiband multi-echo fMRI.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[18105] doi:10.3389/frdem.2025.1546433 [paper, repository]

Neurogenesis drives hippocampal formation-wide spatial transcription alterations in health and Alzheimer's disease.

Journal: Frontiers in dementia

Authors' code: Zenodo 12810114 (CC-BY-4.0)

Status: code verified

[18106] doi:10.3390/ijms26083749 [paper, data]

Reanalysis of Published Histological Data Can Help to Characterize Neuronal Death After Spinal Cord Injury.

Journal: International journal of molecular sciences

Status: data only, 6 datasets cited

[18107] doi:10.7554/elife.100085 [paper, data]

Ventral tegmental area interneurons revisited: GABA and glutamate projection neurons make local synapses.

Journal: eLife

Status: data only, 1 dataset cited

[18108] doi:10.7554/elife.92539 [paper, repository]

A neurocomputational account of the link between social perception and social action.

Journal: eLife

Authors' code: OSF 4u5vs (no license)

Status: code verified

Tuesday, 15 April 2025 (44 papers, 36 on this page)

[18109] doi:10.1002/mco2.70157 [paper, repository]

Integrative Multiomics Profiling of Mouse Hippocampus Reveals Transcriptional Upregulation of Interferon-Stimulated Genes Through PU.1 Regulator in Microglial Activation Induced by Chronic Cerebral Hypoperfusion.

Journal: MedComm

Authors' code: chuiqin/irGSEA (other)

Status: code verified, 26 files readable, 1 match

[18110] doi:10.1007/s00701-025-06521-8 [paper, data]

The British object and action naming test for intraoperative mapping (BOATIM): A standardised and clinically tested framework for awake brain surgery.

Journal: Acta neurochirurgica

Status: data only, 1 dataset cited

[18111] doi:10.1007/s11571-025-10252-y [paper, repository]

Teaching CORnet human fMRI representations for enhanced model-brain alignment.

Journal: Cognitive neurodynamics

Authors' code: ZitongLu1996/ReAlnet (GPL-3.0)

Status: code verified, 9 files readable

[18112] doi:10.1016/j.isci.2025.112427 [paper, data]

Unsupervised alignment reveals structural commonalities and differences in neural representations of natural scenes across individuals and brain areas.

Journal: iScience

Status: code on request, 1 dataset cited

[18113] doi:10.1016/j.isci.2025.112430 [paper, data]

Multiple sclerosis severity variant in <i>DYSF-ZNF638</i> locus associates with neuronal loss and inflammation.

Journal: iScience

Status: data only, 1 dataset cited

[18114] doi:10.1016/j.xcrm.2025.102084 [paper, repository]

A structural haplotype in the 17q21.31 MAPT region is associated with increased risk for chronic traumatic encephalopathy endophenotypes.

Journal: Cell reports. Medicine

Authors' code: freeseek/impute17q21 (no license), reich.hms.harvard.edu/software (no license), imputationserver.sph.umich.edu (no license), mathgen.stats.ox.ac.uk/impute/impute_v2.html (no license), mathgen.stats.ox.ac.uk/genetics_software/shapeit (no license), csg.sph.umich.edu/abecasis/metal (no license)

Status: code verified, 1 file readable

[18115] doi:10.1038/s41435-025-00327-5 [paper]

Comprehensive analysis of heat shock proteins in glioma revealed the association with glioma-associated myeloid cells.

Journal: Genes and immunity

Status: data only

[18116] doi:10.1038/s41467-025-58825-z [paper, repository]

Shared pathway-specific network mechanisms of dopamine and deep brain stimulation for the treatment of Parkinson's disease.

Journal: Nature communications

Authors' code: richardkoehler/pte-stats (MIT), neuromodulation/manuscript-binns_cortex_stn_comm (MIT), Zenodo 10974655 (MIT), Zenodo 8360749 (MIT), Zenodo 8377820 (MIT), neuromodulation/pyparrm (MIT), braindatalab/pybispectra (MIT)

Status: code verified, 311 files readable, 22 matches

[18117] doi:10.1038/s41467-025-58858-4 [paper, repository]

Reward integration in prefrontal-cortical and ventral-hippocampal nucleus accumbens inputs cooperatively modulates engagement.

Journal: Nature communications

Authors' code: eshaaniyer/mPFCvHip-NAc_RewardIntegration (no license)

Status: code verified, 11 files readable

[18118] doi:10.1038/s41539-025-00311-8 [paper]

Effects of different AI-driven Chatbot feedback on learning outcomes and brain activity.

Journal: NPJ science of learning

Status: code on request

[18119] doi:10.1038/s41562-025-02160-2 [paper, repository]

Charting brain functional development from birth to 6 years of age.

Journal: Nature human behaviour

Authors' code: jfortin1/combatharmonization (no license), OSF h25a7 (no license)

Status: code verified, 17 files readable

[18120] doi:10.1038/s41593-025-01935-0 [paper, repository]

Functionally distinct GABAergic amacrine cell types regulate spatiotemporal encoding in the mouse retina.

Journal: Nature neuroscience

Authors' code: AkiatNIG/Matsumoto_et_al_GABA2024 (no license), Zenodo 14854477 (CC-BY-4.0)

Status: code verified, 2 files readable

[18121] doi:10.1038/s41597-025-04779-2 [paper, repository]

Submillimeter Ultra-High Field 9.4 T Brain MR Image Collection and Manual Cortical Segmentations.

Journal: Scientific data

Authors' code: MPI-Neuroinformatics/UltraCortex (MIT)

Status: code verified, 6 files readable, 7 matches

[18122] doi:10.1038/s41598-025-95123-6 [paper, repository]

Dogs' olfactory resting-state functional connectivity is modulated by age and brain shape.

Journal: Scientific reports

Authors' code: spunt/bspm (MIT)

Status: code verified, 2,000 files readable, 5 matches

[18123] doi:10.1038/s41598-025-96121-4 [paper, repository]

Effects of multisensory simultaneity judgment training on the comprehension and cortical processing of speech in noise: a randomized controlled trial.

Journal: Scientific reports

Authors' code: ansleykunnath/fnirs-analysis (no license)

Status: code verified, 7 files readable, 6 matches

[18124] doi:10.1038/s41598-025-96307-w [paper, repository]

Brain-guided convolutional neural networks reveal task-specific representations in scene processing.

Journal: Scientific reports

Authors' code: pbsc.colgate.edu/~bchansen/hansengreene_etal_2025 (no license)

Status: code verified

[18125] doi:10.1038/s41598-025-96611-5 [paper, repository]

Multi-scale convolutional transformer network for motor imagery brain-computer interface.

Journal: Scientific reports

Authors' code: snailpt/MSCFormer (Apache-2.0)

Status: code verified, 4 files readable, 4 matches

[18126] doi:10.1038/s41598-025-97621-z [paper, repository]

Enhanced individual difference of functional brain network induced by volitional eyes closing.

Journal: Scientific reports

Authors' code: lufee10/myPrep (no license)

Status: code verified, 5 files readable, 1 match

[18127] doi:10.1038/s41598-025-97688-8 [paper]

Rubidium ions as a novel therapeutic approach for glioblastoma.

Journal: Scientific reports

Status: data only

[18128] doi:10.1080/07853890.2025.2490822 [paper, data]

Unveiling structural damage of the corpus callosum in amyotrophic lateral sclerosis through diffusion tensor imaging and spread direction perspectives.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[18129] doi:10.1080/10717544.2025.2486840 [paper, data]

Constructed transferrin receptor-targeted liposome for the delivery of fluvoxamine to improve prognosis in a traumatic brain injury mouse model.

Journal: Drug delivery

Status: data only, 1 dataset cited

[18130] doi:10.1093/braincomms/fcaf059 [paper, repository]

Machine learning determines the incidence of Alzheimer's disease based on population gut microbiome profile.

Journal: Brain communications

Authors' code: thesharmalab.com (no license)

Status: code verified

[18131] doi:10.1101/2025.04.08.647900 [paper, repository]

Depth-resolved fiber photometry of amyloid plaque signals in freely behaving Alzheimer’s disease mice

Journal: bioRxiv (preprint)

Authors' code: vsnnlab/AMaSiNe (no license)

Status: code verified, 16 files readable

[18132] doi:10.1101/2025.04.09.647910 [paper]

Spatial Adaptation of Primate Retinal Ganglion Cells between Artificial and Natural Stimuli

Journal: bioRxiv (preprint)

Status: code on request

[18133] doi:10.1113/jp287802 [paper, repository]

Heartbeat-related activity in the anterior thalamus differs between phasic and tonic REM sleep.

Journal: The Journal of physiology

Authors' code: rokazita/ANT-REM-HEP (no license)

Status: code verified, 8 files readable, 4 matches

[18134] doi:10.1162/imag_a_00528 [paper]

IRONMAP: Iron network mapping and analysis protocol for detecting over-time brain iron abnormalities in neurological disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[18135] doi:10.1162/imag_a_00533 [paper, repository]

SpinWalk: A Monte Carlo simulator for MR-signal formation in inhomogeneous tissue.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: aghaeifar/SpinWalk (MIT), aghaeifar-publications/SpinWalk_demo (no license)

Status: code verified, 90 files readable, 12 matches

[18136] doi:10.1172/jci.insight.190785 [paper, repository]

Interaction between native and prosthetic visual responses in optogenetic visual restoration.

Journal: JCI insight

Authors' code: moritzlindner/lindnerlab (no license)

Status: code verified, 2 files readable

[18137] doi:10.1186/s13020-025-01098-x [paper, data]

Huang-Lian-Jie-Du decoction alleviates cognitive deficits in Alzheimer's disease model 5xFAD mice by inhibiting Trem2/Dap12 signaling pathway.

Journal: Chinese medicine

Status: data only, 2 datasets cited

[18138] doi:10.1242/dmm.052200 [paper, data]

Expanding the neuroimmune research toolkit with in vivo brain organoid technologies.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[18139] doi:10.1371/journal.pbio.3003117 [paper, repository]

The G protein modifier KCTD5 tunes the decoding of neuromodulatory signals necessary for motor function in striatal neurons.

Journal: PLoS biology

Authors' code: BrianMunteanResearch/KCTD5_MoSeq_Analysis (no license), Zenodo 15019085 (CC-BY-4.0)

Status: code verified, 6 files readable, 1 match

[18140] doi:10.1371/journal.pcbi.1012934 [paper, repository]

MINT: A toolbox for the analysis of multivariate neural information coding and transmission.

Journal: PLoS computational biology

Authors' code: panzerilab/MINT (GPL-3.0), Zenodo 13998526 (CC-BY-4.0), panzerilab/MINT_figures (no license), supp:PMC12043240/pcbi.1012934.s002.gz (no license)

Status: code verified, 920 files readable, 6 matches

[18141] doi:10.1371/journal.pcbi.1012980 [paper, repository]

Perceptual learning improves discrimination but does not reduce distortions in appearance.

Journal: PLoS computational biology

Authors' code: csb0 (no license)

Status: code verified

[18142] doi:10.1371/journal.pone.0321580 [paper, repository]

Beware of physiology: Anthropomorphism as a simplification mechanism for mastering complex human-machine interfaces.

Journal: PloS one

Authors' code: axelroques/roques2025-beware_of_physiology (no license)

Status: code verified, 9 files readable, 5 matches

[18143] doi:10.1371/journal.pone.0321596 [paper, repository]

Functional kinome profiling reveals brain protein kinase signaling pathways and gene networks altered by acute voluntary exercise in rats.

Journal: PloS one

Authors' code: Zenodo 13340309 (CC-BY-4.0), cogdisreslab/vwr-rats-kinome (no license)

Status: code verified, 38 files readable, 4 matches

[18144] doi:10.3389/fendo.2025.1571740 [paper, repository]

Opposite sex housing enhances reproductive function and induces transcriptional changes in the preoptic area of GnRH-deficient mice.

Journal: Frontiers in endocrinology

Authors' code: Zenodo 14511480 (CC-BY-4.0), tylerakonom/dnfgfr (no license)

Status: code verified, 8 files readable, 1 match

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