Every paper, by date: page 83

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 83 of 200: 8 April 2025 to 1 April 2025.

Tuesday, 8 April 2025 (35 papers, 4 on this page)

[18369] doi:10.3389/fped.2025.1571426 [paper, data]

Compound heterozygous variants of the <i>NARS2</i> gene in siblings with refractory seizures: two case report and literature review.

Journal: Frontiers in pediatrics

Status: data only, 1 dataset cited

[18370] doi:10.3390/ph18040547 [paper]

Treatment with Manganese Porphyrin, MnTnBuOE-2-PyP<sup>5+</sup>, Suppressed the Activation of Macrophages in a Mouse Intracerebral Hemorrhage.

Journal: Pharmaceuticals (Basel, Switzerland)

Status: code on request

[18371] doi:10.3758/s13415-025-01294-0 [paper, data]

Comparative analysis of early visual processes across presentation modalities: The event-related potential evoked by real-life, virtual reality, and planar objects.

Journal: Cognitive, affective & behavioral neuroscience

Status: data only, 1 dataset cited

[18372] doi:10.4062/biomolther.2024.200 [paper]

Stress Accelerates Depressive-Like Behavior through Increase of SPNS2 Expression in Tg2576 Mice.

Journal: Biomolecules & therapeutics

Status: data only

Monday, 7 April 2025 (39 papers)

[18373] doi:10.1016/j.bpsgos.2025.100500 [paper, repository]

<i>Grin2a</i> Hypofunction Impairs Spatial Working Memory and Disrupts Hippocampal Network Oscillations and Excitatory-Inhibitory Balance.

Journal: Biological psychiatry global open science

Authors' code: NeuroDataa/Grin2a_Hippocampal_pMEA_Analysis (no license)

Status: code verified, 2 files readable, 2 matches

[18374] doi:10.1016/j.jbc.2025.108483 [paper, data]

CMP-sialic acid synthetase in Drosophila requires N-glycosylation of a noncanonical site.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[18375] doi:10.1016/j.xcrm.2025.102079 [paper, data]

Microneedle delivery of CAR-M-like engineered macrophages alleviates intervertebral disc degeneration through enhanced efferocytosis capacity.

Journal: Cell reports. Medicine

Status: code on request, 1 dataset cited

[18376] doi:10.1021/acs.jproteome.4c00884 [paper, repository]

NA_mCNN: Classification of Sodium Transporters in Membrane Proteins by Integrating Multi-Window Deep Learning and ProtTrans for Their Therapeutic Potential.

Journal: Journal of proteome research

Authors' code: Malik-glt/DeepSodiumTransporters (no license)

Status: code verified, 12 files readable, 4 matches

[18377] doi:10.1038/s41467-025-58274-8 [paper, repository]

Enabling new insights from old scans by repurposing clinical MRI archives for multiple sclerosis research.

Journal: Nature communications

Authors' code: MS-PINPOINT/mindGlide (MIT), Zenodo 14725884 (MIT)

Status: code verified, 40 files readable, 4 matches

[18378] doi:10.1038/s41467-025-58388-z [paper, repository]

Stabilized carbon coating on microelectrodes for scalable and interoperable neurotransmitter sensing.

Journal: Nature communications

Authors' code: qiangy0819/dual-modal-sensing (no license)

Status: code verified, 3 files readable, 3 matches

[18379] doi:10.1038/s41467-025-58485-z [paper, data]

Far-red fluorescent genetically encoded calcium ion indicators.

Journal: Nature communications

Status: data only, 1 dataset cited

[18380] doi:10.1038/s41467-025-58604-w [paper, repository]

MRI signatures of cortical microstructure in human development align with oligodendrocyte cell-type expression.

Journal: Nature communications

Authors' code: palombom/SANDI-Matlab-Toolbox-v1.0 (BSD-2-Clause)

Status: code verified, 69 files readable, 5 matches

[18381] doi:10.1038/s41598-025-94361-y [paper, data]

Characterization of contrast-mediated collinear interactions in the human visual system.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18382] doi:10.1038/s41598-025-95734-z [paper, data]

Speech emotion recognition with light weight deep neural ensemble model using hand crafted features.

Journal: Scientific reports

Status: data only, 3 datasets cited

[18383] doi:10.1038/s41598-025-96234-w [paper, repository]

Decomposing the effect of normal aging and Alzheimer's disease in brain morphological changes via learned aging templates.

Journal: Scientific reports

Authors' code: Fjr9516/DBM_with_DL (MIT)

Status: code verified, 82 files readable, 3 matches

[18384] doi:10.1038/s41598-025-96240-y [paper, repository]

An ERP study on verb bias and thematic role assignment in standard Indonesian.

Journal: Scientific reports

Authors' code: shorturl.at/g96va (no license)

Status: code verified

[18385] doi:10.1038/s41598-025-96416-6 [paper, data]

Federated learning with integrated attention multiscale model for brain tumor segmentation.

Journal: Scientific reports

Status: data only, 3 datasets cited

[18386] doi:10.1038/s44318-025-00428-x [paper]

GAF-dependent chromatin plasticity determines promoter usage to mediate locust gregarious behavior.

Journal: The EMBO journal

Status: data only

[18387] doi:10.1038/s44318-025-00430-3 [paper, data]

The selenocysteine-containing protein SELENOT maintains dopamine signaling in the midbrain to protect mice from hyperactivity disorder.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[18388] doi:10.1073/pnas.2409985122 [paper, repository]

Whole-brain white matter variation across childhood environments.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF cfzrq (no license)

Status: code verified, 5 files readable, 13 matches

[18389] doi:10.1073/pnas.2413871122 [paper, data]

The Beholder's Share: Bridging art and neuroscience to study individual differences in subjective experience.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[18390] doi:10.1073/pnas.2417148122 [paper, data]

Structural basis of the cysteinyl leukotriene receptor type 2 activation by LTD4.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[18391] doi:10.1080/2162402x.2025.2485535 [paper, repository]

EphA2 and phosphoantigen-mediated selective killing of medulloblastoma by γδT cells preserves neuronal and stem cell integrity.

Journal: Oncoimmunology

Authors' code: rnabioco/medulloblast (no license)

Status: code verified, 21 files readable

[18392] doi:10.1093/braincomms/fcaf106 [paper, repository]

Modulating limbic circuits in temporal lobe epilepsy: impacts on seizures, memory, mood and sleep.

Journal: Brain communications

Authors' code: bnelair/best_toolbox (BSD-3-Clause)

Status: code verified, 86 files readable

[18393] doi:10.1101/2025.04.03.646622 [paper, repository]

Distorting anatomy to test MEG models and metrics

Journal: bioRxiv (preprint)

Authors' code: barnesgr123/spm_distort (no license)

Status: code verified, 6 files readable, 3 matches

[18394] doi:10.1128/jvi.02307-24 [paper, data]

Amino acid changes accumulated in the fusion protein allow neuropathogenic measles viruses to use a broad repertoire of host factors for cell fusion triggering.

Journal: Journal of virology

Status: data only, 1 dataset cited

[18395] doi:10.1162/imag_a_00531 [paper]

Modulating somatosensory alpha oscillations using short-period transcranial alternating current stimulation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[18396] doi:10.1186/s13059-025-03552-3 [paper, repository]

Benchmark of cellular deconvolution methods using a multi-assay dataset from postmortem human prefrontal cortex.

Journal: Genome biology

Authors' code: lieberinstitute/human_dlpfc_deconvolution (MIT)

Status: code verified, 263 files readable, 39 matches

[18397] doi:10.1371/journal.pbio.3003087 [paper, repository]

Whisking and locomotion are jointly represented in superior colliculus neurons.

Journal: PLoS biology

Authors' code: Zenodo 14790606 (MIT), GiocomoLab/ln-model-of-mec-neurons (no license), sumachinta/body-position_decoding_model (MIT)

Status: code verified, 38 files readable, 4 matches

[18398] doi:10.1371/journal.pcbi.1012848 [paper, data]

The multiscale self-similarity of the weighted human brain connectome.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[18399] doi:10.1371/journal.pcbi.1012951 [paper, repository]

A burst-dependent thalamocortical substrate for perceptual awareness.

Journal: PLoS computational biology

Authors' code: cjwhyte/LVPA (no license)

Status: code verified, 20 files readable, 8 matches

[18400] doi:10.1371/journal.pcbi.1012961 [paper, repository]

Neural energy coding patterns of dopaminergic neural microcircuit and its impairment in major depressive disorder: A computational study.

Journal: PLoS computational biology

Authors' code: Yuanxi-Li/MDD-NeuralEnergy (Apache-2.0)

Status: code verified, 62 files readable

[18401] doi:10.1371/journal.pone.0312764 [paper, repository]

Single-cell transcriptomics reveals immunosuppressive microenvironment and highlights tumor-promoting macrophage cells in Glioblastoma.

Journal: PloS one

Authors' code: broadinstitute/inferCNV (other)

Status: code verified, 82 files readable, 2 matches

[18402] doi:10.1371/journal.pone.0318620 [paper, data]

Ensemble deep learning for Alzheimer's disease diagnosis using MRI: Integrating features from VGG16, MobileNet, and InceptionResNetV2 models.

Journal: PloS one

Status: data only, 1 dataset cited

[18403] doi:10.21203/rs.3.rs-6231369/v1 [paper]

Dissociable Physiological Biomarkers of Psychiatric Symptoms in Parkinson’s disease in the Subthalamic Nucleus: Evidence from Deep Brain Stimulation Intracranial Recordings

Journal: Research Square (preprint)

Status: code on request

[18404] doi:10.21203/rs.3.rs-6340574/v1 [paper, data]

Deciphering Histamine Pathway Networks in the Human Brain: A Multimodal Approach to Cognition and Psychiatric Disorders

Journal: Research Square (preprint)

Status: data only, 1 dataset cited

[18405] doi:10.31616/asj.2025.0050 [paper, repository]

Development and validation of a cost-effective three-dimensional-printed cervical spine model for endoscopic posterior cervical foraminotomy training: a prospective educational study from Turkey.

Journal: Asian spine journal

Authors' code: AkbulutBB/cervicalendoscope (CC-BY-NC-SA-4.0)

Status: empty repository, 2 files readable

[18406] doi:10.3389/fnagi.2025.1540830 [paper]

Substantia nigra and blood gene signatures and biomarkers for Parkinson's disease from integrated multicenter microarray-based transcriptomic analyses.

Journal: Frontiers in aging neuroscience

Status: data only

[18407] doi:10.3390/brainsci15040382 [paper, data]

Self-Supervised Learning with Adaptive Frequency-Time Attention Transformer for Seizure Prediction and Classification.

Journal: Brain sciences

Status: data only, 2 datasets cited

[18408] doi:10.3390/s25072332 [paper, repository]

Robust EEG Characteristics for Predicting Neurological Recovery from Coma After Cardiac Arrest.

Journal: Sensors (Basel, Switzerland)

Authors' code: gitee.com/zhuzhuzy/eeg-for-ca (no license)

Status: code verified, 23 files readable, 7 matches

[18409] doi:10.7554/elife.101043 [paper, data]

Synaptic cell adhesion molecule <i>Cdh6</i> identifies a class of sensory neurons with novel functions in colonic motility.

Journal: eLife

Status: data only, 2 datasets cited

[18410] doi:10.7554/elife.102819 [paper, repository]

A single-cell atlas of spatial and temporal gene expression in the mouse cranial neural plate.

Journal: eLife

Authors' code: ZallenLab/Brooks-et-al-scRNAseq-analysis-notebook (GPL-2.0)

Status: code verified, 3 files readable, 2 matches

[18411] doi:10.7554/elife.103109 [paper, repository]

Cellular evolution of the hypothalamic preoptic area of behaviorally divergent deer mice.

Journal: eLife

Authors' code: jjenny/PeroPOAEvolution (MIT)

Status: code verified, 3 files readable, 1 match

Sunday, 6 April 2025 (6 papers)

[18412] doi:10.1038/s41380-025-02960-y [paper, data]

Striatal dopamine tone is positively associated with adiposity in humans as determined by PET using dual dopamine type-2 receptor antagonist tracers.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[18413] doi:10.1038/s41380-025-02997-z [paper, repository]

CRISPRi-based screen of autism spectrum disorder risk genes in microglia uncovers roles of ADNP in microglia endocytosis and synaptic pruning.

Journal: Molecular psychiatry

Authors' code: noamteyssier/sgcount (MIT), noamteyssier.github.io/crispr_screen (no license), kampmannlab.ucsf.edu/resources (no license)

Status: code verified, 11 files readable

[18414] doi:10.1038/s41398-025-03336-0 [paper, repository]

Molecular, physiological and functional features underlying antipsychotic medication use related cortical thinning.

Journal: Translational psychiatry

Authors' code: ltuominen/AP_brainorganization (no license)

Status: code verified, 18 files readable, 7 matches

[18415] doi:10.1162/imag_a_00527 [paper, repository]

Measuring the neurodevelopmental trajectory of excitatory-inhibitory balance via visual gamma oscillations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: nsrhodes/gamma_opm_2024 (no license)

Status: code verified, 46 files readable, 8 matches

[18416] doi:10.3390/cancers17071239 [paper, repository]

Evaluating the Potential of PSMA Targeting in CNS Tumors: Insights from Large-Scale Transcriptome Profiling.

Journal: Cancers

Authors' code: d3b-center/OpenPedCan-analysis (CC0-1.0)

Status: code verified, 384 files readable, 3 matches

[18417] doi:10.3390/vision9020030 [paper, data]

Brain Functional Connectivity During First- and Third-Person Visual Imagery.

Journal: Vision (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 5 April 2025 (16 papers)

[18418] doi:10.1007/s00415-025-13068-2 [paper, data]

Limited added value of systematic spinal cord MRI vs brain MRI alone to classify patients with MS as active or inactive during follow-up.

Journal: Journal of neurology

Status: data only, 1 dataset cited

[18419] doi:10.1007/s00429-025-02906-8 [paper, repository]

In the brain of the beholder: bi-stable motion reveals mesoscopic-scale feedback modulation in V1.

Journal: Brain structure & function

Authors' code: 27-apizzuti/meso_MotionQuartet (no license)

Status: code verified, 140 files readable, 13 matches

[18420] doi:10.1007/s10565-025-10011-z [paper, data]

Lamin A/C regulates cerebellar granule cell maturation.

Journal: Cell biology and toxicology

Status: data only, 1 dataset cited

[18421] doi:10.1016/j.neurot.2025.e00584 [paper, data]

Role of cystathionine-β-synthase and hydrogen sulfide in down syndrome.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[18422] doi:10.1038/s41380-025-02962-w [paper]

Translational research approach to social orienting deficits in autism: the role of superior colliculus-ventral tegmental pathway.

Journal: Molecular psychiatry

Status: code on request

[18423] doi:10.1038/s41398-025-03353-z [paper, repository]

Behavioral and neurofunctional profiles of delay aversion in children with attention-deficit hyperactivity disorder.

Journal: Translational psychiatry

Authors' code: OSF qxe9h (no license)

Status: code verified, 1 file readable, 1 match

[18424] doi:10.1038/s41467-025-58554-3 [paper, repository]

A differential requirement for ciliary transition zone proteins in human and mouse neural progenitor fate specification.

Journal: Nature communications

Authors' code: drive.google.com/file/d (no license)

Status: code verified

[18425] doi:10.1038/s41598-025-96575-6 [paper, data]

Explainable artificial intelligence to diagnose early Parkinson's disease via voice analysis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18426] doi:10.1038/s42003-025-07993-1 [paper]

Direct comparisons of neural activity during placebo analgesia and nocebo hyperalgesia between humans and rats.

Journal: Communications biology

Status: code on request

[18427] doi:10.1038/s43856-025-00809-7 [paper, data]

Mini-GRID therapy delivers optimised spatially fractionated radiation therapy using a flattening free filter accelerator.

Journal: Communications medicine

Status: data only, 1 dataset cited

[18428] doi:10.1136/bmjpo-2024-003036 [paper, repository]

Predictors of persisting symptoms after concussion in children following a traumatic brain injury: a longitudinal retrospective cohort study.

Journal: BMJ paediatrics open

Authors' code: rebeccawils/PCS-project-code-lists (no license)

Status: empty repository

[18429] doi:10.1186/s13195-025-01718-6 [paper, repository]

Personalized brain models link cognitive decline progression to underlying synaptic and connectivity degeneration.

Journal: Alzheimer's research & therapy

Authors' code: LoreAma/Code_AD_simulations (GPL-2.0)

Status: code verified, 5 files readable, 2 matches

[18430] doi:10.1186/s13287-025-04271-z [paper]

Effect of immunosuppression on hESC-derived retina organoids in vitro and in vivo.

Journal: Stem cell research & therapy

Status: code on request

[18431] doi:10.3390/jemr18020010 [paper, data]

Eye Movement Indicator Difference Based on Binocular Color Fusion and Rivalry.

Journal: Journal of eye movement research

Status: data only, 1 dataset cited

[18432] doi:10.3390/life15040606 [paper, repository]

A Combined Approach Using T2*-Weighted Dynamic Susceptibility Contrast MRI Perfusion Parameters and Radiomics to Differentiate Between Radionecrosis and Glioma Progression: A Proof-of-Concept Study.

Journal: Life (Basel, Switzerland)

Authors' code: dlcornejo/DSC-MRI-and-radiomics-to-differentiate-between-radionecrosis-and-glioma-progression (no license)

Status: code verified, 8 files readable, 7 matches

[18433] doi:10.34133/research.0648 [paper, repository]

Adaptive Whole-Brain Dynamics Predictive Method: Relevancy to Mental Disorders.

Journal: Research (Washington, D.C.)

Authors' code: B-and-ILab/Adaptive-Whole-Brain-Dynamics-Predictive-Method-Relevancy-to-Mental-Disorders (no license)

Status: code verified, 13 files readable, 2 matches

Friday, 4 April 2025 (33 papers)

[18434] doi:10.1002/psp4.70026 [paper]

SpatialCNS-PBPK: An R/Shiny Web-Based Application for Physiologically Based Pharmacokinetic Modeling of Spatial Pharmacokinetics in the Human Central Nervous System and Brain Tumors.

Journal: CPT: pharmacometrics & systems pharmacology

Status: code on request

[18435] doi:10.1007/s00401-025-02869-4 [paper, repository]

Seeding-competent early tau multimers are associated with cell type-specific transcriptional signatures.

Journal: Acta neuropathologica

Authors' code: rahfel/tauPLA (no license)

Status: code verified, 2 files readable

[18436] doi:10.1007/s10162-025-00984-3 [paper]

Contributions of Auditory Nerve Density and Synchrony to Speech Understanding in Older Cochlear Implant Users.

Journal: Journal of the Association for Research in Otolaryngology : JARO

Status: code on request

[18437] doi:10.1007/s11538-025-01438-w [paper, repository]

Extending Mathematical Frameworks to Investigate Neuronal Dynamics in the Presence of Microglial Ensheathment.

Journal: Bulletin of mathematical biology

Authors' code: Zenodo 15086374 (CC-BY-4.0), handylab-umn/microglial-ensheathment-bmb (no license)

Status: code verified, 31 files readable, 14 matches

[18438] doi:10.1016/j.crmeth.2025.101010 [paper]

Minimally invasive, wide-field two-photon imaging of the brainstem at cellular resolution.

Journal: Cell reports methods

Status: code on request

[18439] doi:10.1016/j.gendis.2025.101624 [paper, repository]

Targeting Wnt/β-catenin activation in combination with temozolomide leads to glioblastoma inhibition and long-term survival in mice.

Journal: Genes & diseases

Authors' code: themilolab.github.io/spata2 (no license)

Status: code verified

[18440] doi:10.1016/j.isci.2025.112352 [paper]

Neuroactive steroids activate membrane progesterone receptors to induce sex specific effects on protein kinase activity.

Journal: iScience

Status: code on request

[18441] doi:10.1016/j.isci.2025.112355 [paper]

Therapeutic restoration of miR-96 prevents hearing loss in mice through modulation of noise-induced and genetic pathways.

Journal: iScience

Status: code on request

[18442] doi:10.1038/s41419-025-07569-1 [paper, data]

Generation and validation of a novel multitarget small molecule in glioblastoma.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[18443] doi:10.1038/s41467-025-58013-z [paper, repository]

Ex vivo cortical circuits learn to predict and spontaneously replay temporal patterns.

Journal: Nature communications

Authors' code: OSF qspnv (no license)

Status: code verified

[18444] doi:10.1038/s41467-025-58187-6 [paper, repository]

Stimulation mapping and whole-brain modeling reveal gradients of excitability and recurrence in cortical networks.

Journal: Nature communications

Authors' code: Davi1990/Momi_et_al_2024 (no license), griffithslab/whobpyt (MIT), Zenodo 14743983 (CC-BY-4.0)

Status: code verified, 66 files readable, 4 matches

[18445] doi:10.1038/s41467-025-58272-w [paper, repository]

Whether or not to act is determined by distinct signals from motor thalamus and orbitofrontal cortex to secondary motor cortex.

Journal: Nature communications

Authors' code: figshare 25894588 (GPL 3.0+)

Status: code verified, 6 files readable

[18446] doi:10.1038/s41467-025-58357-6 [paper, repository]

A blood- and brain-based EWAS of smoking.

Journal: Nature communications

Authors' code: Zenodo 14882848 (CC-BY-4.0), aleksandra-chybowska/smoking_episcore (no license)

Status: code verified, 218 files readable, 16 matches

[18447] doi:10.1038/s41467-025-58421-1 [paper, repository]

Continuous sensorimotor transformation enhances robustness of neural dynamics to perturbation in macaque motor cortex.

Journal: Nature communications

Authors' code: zhengcong26/Interception_ICMS (MIT), Zenodo 14959105 (MIT)

Status: code verified, 100 files readable, 6 matches

[18448] doi:10.1038/s41467-025-58466-2 [paper, repository]

Spatial transcriptomics of the aging mouse brain reveals origins of inflammation in the white matter.

Journal: Nature communications

Authors' code: eurotomania/TORTOISEV4 (GPL-3.0), Teichlab/SpatialDE (MIT), theMILOlab/SPATA (no license), PSenlab/Wang_2025 (no license), Zenodo 14750569 (CC-BY-4.0)

Status: code verified, 304 files readable, 5 matches

[18449] doi:10.1038/s41531-025-00885-5 [paper, repository]

A prebiotic dietary pilot intervention restores faecal metabolites and may be neuroprotective in Parkinson's Disease.

Journal: NPJ Parkinson's disease

Authors' code: hildebra/MATAFILER (GPL-3.0), PDMicro/PDD-scripts (no license)

Status: code verified, 137 files readable, 10 matches

[18450] doi:10.1038/s41598-025-86635-2 [paper, repository]

A fine-tuned convolutional neural network model for accurate Alzheimer's disease classification.

Journal: Scientific reports

Authors' code: kainatsaher/alzheimer (no license)

Status: code verified, 2 files readable

[18451] doi:10.1038/s42003-025-07977-1 [paper, data]

Targeting SCD triggers lipotoxicity of cancer cells and enhances anti-tumor immunity in breast cancer brain metastasis mouse models.

Journal: Communications biology

Status: data only, 1 dataset cited

[18452] doi:10.1038/s42003-025-07998-w [paper, data]

Beyond boundaries: extended temporal flexibility in synaptic tagging and capture.

Journal: Communications biology

Status: data only, 1 dataset cited

[18453] doi:10.1038/s42003-025-08006-x [paper, repository]

Preference-independent saliency map in the mouse superior colliculus.

Journal: Communications biology

Authors' code: yatangli/Wu_SailencyMap_2025 (Apache-2.0), Zenodo 15086844 (CC-BY-4.0)

Status: code verified, 10 files readable

[18454] doi:10.1073/pnas.2418783122 [paper, data]

A disease-specific convergence of host and Epstein-Barr virus genetics in multiple sclerosis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[18455] doi:10.1088/1741-2552/adc62a [paper, data]

Fascicle-selective kilohertz-frequency neural conduction block with longitudinal intrafascicular electrodes.

Journal: Journal of neural engineering

Status: data only, 1 dataset cited

[18456] doi:10.1098/rsfs.2024.0043 [paper, repository]

Exercise modulates brain pulsatility: insights from q-aMRI and MRI-based flow methods.

Journal: Interface focus

Authors' code: Zenodo 14715242 (bsd-2-clause-netbsd), abi-animus-laboratory/qvtplus (BSD-2-Clause)

Status: code verified, 148 files readable, 2 matches

[18457] doi:10.1098/rsfs.2024.0044 [paper, repository]

<i>In vivo</i> magnetic resonance imaging of the interstitial pressure gradients (pgMRI) using a pulsatile poroelastic computational model.

Journal: Interface focus

Authors' code: doi:10.5061/dryad.4b8gthtq7 (no license)

Status: dead link

[18458] doi:10.1126/sciadv.ado8268 [paper, repository]

Robust semi-automatic vessel tracing in the human retinal image by an instance segmentation neural network.

Journal: Science advances

Authors' code: doi:10.5061/dryad.sf7m0cggh (no license), yibiophotonics/siyi_vessel_tracing (no license), Zenodo 14939206 (MIT)

Status: code verified, 57 files readable, 5 matches

[18459] doi:10.1161/circulationaha.124.070632 [paper, repository]

Genetic and Lifestyle Risks for Coronary Artery Disease and Long-Term Risk of Incident Dementia Subtypes.

Journal: Circulation

Authors' code: scottchiesa/UKB_PRS_LRS_Dementia (no license)

Status: code verified, 11 files readable, 2 matches

[18460] doi:10.1186/s13041-025-01200-2 [paper, data]

Target oxidative stress-induced disulfidptosis: novel therapeutic avenues in Parkinson's disease.

Journal: Molecular brain

Status: data only, 3 datasets cited

[18461] doi:10.1371/journal.pcbi.1012959 [paper, repository]

Seizure and redox rescue in a model of glucose transport deficiency.

Journal: PLoS computational biology

Authors' code: bluebrain/glut1_ds_model (MIT)

Status: code verified, 41 files readable, 6 matches

[18462] doi:10.1523/eneuro.0561-24.2025 [paper, repository]

The Effect of Speech Masking on the Human Subcortical Response to Continuous Speech.

Journal: eNeuro

Authors' code: polonenkolab/peaky_snr (BSD-3-Clause), Zenodo 11640 (BSD-3-Clause), Zenodo 10802516 (CC-BY-4.0), maddoxlab/spdif-splitter (BSD-3-Clause), labsn/expyfun (BSD-3-Clause)

Status: code verified, 172 files readable, 4 matches

[18463] doi:10.3390/biomimetics10040225 [paper, data]

A Capsule Decision Neural Network Based on Transfer Learning for EEG Signal Classification.

Journal: Biomimetics (Basel, Switzerland)

Status: data only, 1 dataset cited

[18464] doi:10.3390/diagnostics15070929 [paper, data]

A Distillation Approach to Transformer-Based Medical Image Classification with Limited Data.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[18465] doi:10.7554/elife.100854 [paper, repository]

Mesenchymal Meis2 controls whisker development independently from trigeminal sensory innervation.

Journal: eLife

Authors' code: kaplanmm/whisker_scrna (MIT)

Status: code verified, 2 files readable, 2 matches

[18466] doi:10.7554/elife.88335 [paper, repository]

Annihilation of action potentials induces electrical coupling between neurons.

Journal: eLife

Authors' code: OSF duyn3 (no license), moritz-s/pyoelectricity (GPL-2.0)

Status: code verified, 24 files readable, 2 matches

Thursday, 3 April 2025 (35 papers)

[18467] doi:10.1007/s12017-025-08847-z [paper]

5-Repurposed Drug Candidates Identified in Motor Neurons and Muscle Tissues with Amyotrophic Lateral Sclerosis by Network Biology and Machine Learning Based on Gene Expression.

Journal: Neuromolecular medicine

Status: data only

[18468] doi:10.1007/s12035-025-04879-5 [paper, data]

Sex and Genotype Affect Mouse Hippocampal Gene Expression in Response to Blast-Induced Traumatic Brain Injury.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[18469] doi:10.1016/j.eclinm.2025.103192 [paper, repository]

An interpretable machine learning model based on optimal feature selection for identifying CT abnormalities in patients with mild traumatic brain injury.

Journal: EClinicalMedicine

Authors' code: naomifang/GBC-CT (no license)

Status: code verified, 7 files readable, 2 matches

[18470] doi:10.1016/j.isci.2025.112331 [paper]

Passive human touch cannot recognize the shape of a pattern imprinted on the fingertip.

Journal: iScience

Status: code on request

[18471] doi:10.1016/j.isci.2025.112345 [paper]

Characterization of Gα<sub>s</sub> and Gα<sub>olf</sub> activation by catechol and non-catechol dopamine D1 receptor agonists.

Journal: iScience

Status: code on request

[18472] doi:10.1016/j.jneumeth.2025.110445 [paper, repository]

Determining the atlas correspondence of Desikan-Killiany-Tourville and Glasser MMP1 atlases across magnetic field strengths.

Journal: Journal of neuroscience methods

Authors' code: kmrprasad/Atlas_correspondence (GPL-3.0)

Status: code verified, 6 files readable

[18473] doi:10.1016/j.redox.2025.103626 [paper, repository]

Redox signaling modulates axonal microtubule organization and induces a specific phosphorylation signature of microtubule-regulating proteins.

Journal: Redox biology

Authors' code: jungmannlab/picasso (MIT)

Status: code verified, 126 files readable, 2 matches

[18474] doi:10.1016/j.xpro.2025.103723 [paper]

Protocol for observing tunneling nanotube formation and function in both fixed and live primary mouse neurons and microglia coculture system.

Journal: STAR protocols

Status: code on request

[18475] doi:10.1021/acs.jpclett.5c00288 [paper, data]

Bifurcation and Frequency Properties of S-Type Neuronic Oscillators.

Journal: The journal of physical chemistry letters

Status: data only, 4 datasets cited

[18476] doi:10.1038/s41467-025-58478-y [paper, repository]

Pathogen infection induces sickness behaviors through neuromodulators linked to stress and satiety in C. elegans.

Journal: Nature communications

Authors' code: flavell-lab/SparseClustering.jl (MIT), flavell-lab/euler_gpu (GPL-3.0), Zenodo 14991619 (MIT), Zenodo 14991578 (MIT), sreeparnap/euler_gpu (MIT), sreeparnap/zenodo_sparseclustering.jl (MIT)

Status: code verified, 45 files readable, 1 match

[18477] doi:10.1038/s41467-025-58541-8 [paper, data]

Artificial non-monotonic neurons based on nonvolatile anti-ambipolar transistors.

Journal: Nature communications

Status: code on request, 1 dataset cited

[18478] doi:10.1038/s41467-025-58621-9 [paper, repository]

Separate brainstem circuits for fast steering and slow exploratory turns.

Journal: Nature communications

Authors' code: figshare 27937887 (CC-BY-4.0)

Status: code verified

[18479] doi:10.1038/s41598-025-94971-6 [paper, data]

Somatosensory false feedback biases emotional ratings through interoceptive embodiment.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18480] doi:10.1038/s41598-025-95449-1 [paper, data]

Peptides developed against receptor binding sites of the E glycoprotein neutralize tick-borne encephalitis virus.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18481] doi:10.1038/s41598-025-95916-9 [paper, repository]

A hierarchical trait and state model for decoding dyadic social interactions.

Journal: Scientific reports

Authors' code: wuqy052/team_flow_latent_trait_state (no license)

Status: code verified, 8 files readable, 10 matches

[18482] doi:10.1038/s41598-025-95948-1 [paper, repository]

Screening system for assessing suitability of cognitive behavioral therapy for chronic low back pain.

Journal: Scientific reports

Authors' code: mediaseek.co.jp (no license)

Status: code verified

[18483] doi:10.1038/s41598-025-96120-5 [paper, repository]

A reduction in energy costs induces integrated states of brain dynamics.

Journal: Scientific reports

Authors' code: coutakagi/2024v1 (no license)

Status: dead link

[18484] doi:10.1038/s41598-025-96160-x [paper, data]

Cholesterol metabolism and neuroinflammatory changes in a non-human primate spinal nerve ligation model.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18485] doi:10.1038/s42003-025-07923-1 [paper, data]

Neurocognitive mechanisms underlying action tool knowledge tasks: specificity of tool-tool compared to hand-tool compatibility tasks.

Journal: Communications biology

Status: code on request, 1 dataset cited

[18486] doi:10.1038/s43587-025-00847-9 [paper, repository]

Regeneration leads to global tissue rejuvenation in aging sexual planarians.

Journal: Nature aging

Authors' code: pletcherlab/arena_r_code (no license)

Status: code verified, 38 files readable

[18487] doi:10.1073/pnas.2402305122 [paper, data]

Dual genetic tracing demonstrates the heterogeneous differentiation and function of neuromesodermal progenitors in vivo.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[18488] doi:10.1073/pnas.2417117122 [paper, repository]

Critical dynamics predicts cognitive performance and provides a common framework for heterogeneous mechanisms impacting cognition.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: computational-neurologie/stc_model_2024 (CC-BY-4.0), computational-neurologie/sde_n_cog (CC-BY-4.0), computational-neurologie/ieegCD (CC-BY-4.0)

Status: code verified, 145 files readable, 16 matches

[18489] doi:10.1073/pnas.2421654122 [paper, data]

The cryo-EM structure and physical basis for anesthetic inhibition of the THIK1 K2P channel.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[18490] doi:10.1093/braincomms/fcaf127 [paper, repository]

Co-activation of interictal epileptiform discharges localizes seizure onset zone and fluctuates with brain state.

Journal: Brain communications

Authors' code: samuelbtomlinson/IED-Coactivation-Public (no license)

Status: code verified, 68 files readable, 12 matches

[18491] doi:10.1101/2025.04.03.646882 [paper, repository]

Cortical motor activity modulates respiration and reduces apnoea in neonates

Journal: bioRxiv (preprint)

Authors' code: paediatric_neuroimaging/cortico_respiratory_coupling (GPL-3.0), paediatric_neuroimaging/identify_ibi_from_ip (no license)

Status: code verified, 32 files readable, 16 matches

[18492] doi:10.1162/imag_a_00526 [paper, repository]

Microstructure-informed brain tissue classification using clustering of quantitative MRI measures.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sharadab/caqe (no license)

Status: code verified, 56 files readable, 8 matches

[18493] doi:10.1186/s12967-025-06324-6 [paper, data]

Analysis of human brain RNA-seq data reveals combined effects of 4 types of RNA modifications and 18 types of programmed cell death on Alzheimer's disease.

Journal: Journal of translational medicine

Status: data only, 2 datasets cited

[18494] doi:10.1186/s12974-025-03366-x [paper, data]

Microglia determine an immune-challenged environment and facilitate ibuprofen action in human retinal organoids.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[18495] doi:10.1371/journal.pbio.3003100 [paper, data]

Gas1-high quiescent neural stem cells are multipotent and produce oligodendrocytes during aging and after demyelinating injury.

Journal: PLoS biology

Status: data only, 2 datasets cited

[18496] doi:10.3389/fmed.2025.1539467 [paper, data]

Unraveling the mechanisms of propofol-induced psychological dependence: a multi-omics approach linked to gut microbiota in hippocampal function.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[18497] doi:10.3390/neurosci6020031 [paper, data]

A Case for Automated Segmentation of MRI Data in Neurodegenerative Diseases: Type II GM1 Gangliosidosis.

Journal: NeuroSci

Status: data only, 2 datasets cited

[18498] doi:10.3390/s25072259 [paper, data]

EEG Signal Prediction for Motor Imagery Classification in Brain-Computer Interfaces.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[18499] doi:10.7554/elife.100196 [paper, repository]

Serotonin modulates infraslow oscillation in the dentate gyrus during non-REM sleep.

Journal: eLife

Authors' code: thepenglab/TDTEEG (MIT)

Status: code verified, 94 files readable, 5 matches

[18500] doi:10.7554/elife.100904 [paper, data]

Simultaneous cyclin D1 overexpression and p27<sup>kip1</sup> knockdown enable robust Müller glia cell cycle reactivation in uninjured mouse retina.

Journal: eLife

Status: data only, 1 dataset cited

[18501] doi:10.7554/elife.98348 [paper, repository]

Synaptic deregulation of cholinergic projection neurons causes olfactory dysfunction across five fly Parkinsonism models.

Journal: eLife

Authors' code: vib-singlecell-nf/vsn-pipelines (GPL-3.0)

Status: code verified, 72 files readable, 9 matches

Wednesday, 2 April 2025 (47 papers)

[18502] doi:10.1002/mrm.30489 [paper, repository]

Short-term gradient imperfections in high-resolution EPI lead to Fuzzy Ripple artifacts.

Journal: Magnetic resonance in medicine

Authors' code: layerfMRI/repository (no license), Zenodo 3514297 (BSD-3-Clause), layerfmri/laynii (BSD-3-Clause)

Status: code verified, 610 files readable, 2 matches

[18503] doi:10.1016/j.celrep.2025.115485 [paper, repository]

Circular RNAs exhibit exceptional stability in the aging brain and serve as reliable age and experience indicators.

Journal: Cell reports

Authors' code: Zenodo 14976887 (CC-BY-4.0), alexdobin/STAR (MIT), marvin-jens/find_circ (GPL-3.0), BIMSBbioinfo/ciRcus (no license)

Status: code verified, 359 files readable, 6 matches

[18504] doi:10.1016/j.isci.2025.112302 [paper, data]

Humanized mouse model reveals T cell ANXA2 as a potential therapeutic target in ischemic stroke.

Journal: iScience

Status: code on request, 1 dataset cited

[18505] doi:10.1016/j.isci.2025.112342 [paper]

Astrocytic FABP5 mediates retrograde endocannabinoid transport at central synapses.

Journal: iScience

Status: code on request

[18506] doi:10.1016/j.omtn.2025.102533 [paper, data]

An inflammation-associated lncRNA induces neuronal damage via mitochondrial dysfunction.

Journal: Molecular therapy. Nucleic acids

Status: code on request, 1 dataset cited

[18507] doi:10.1016/j.ssmph.2025.101795 [paper, data]

The contribution of social determinants of health to long-term outcomes following traumatic brain injury.

Journal: SSM - population health

Status: data only, 1 dataset cited

[18508] doi:10.1016/j.ymthe.2025.03.057 [paper, data]

Current trends in gene therapy to treat inherited disorders of the brain.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: data only, 1 dataset cited

[18509] doi:10.1021/acsomega.5c01028 [paper, data]

On Levodopa Interactions with Brain Disease Amyloidogenic Proteins at the Nanoscale.

Journal: ACS omega

Status: data only, 2 datasets cited

[18510] doi:10.1038/s41419-025-07542-y [paper, repository]

SGK1 upregulation in GFAP⁺ neurons in the frontal association cortex protects against neuronal apoptosis after spinal cord injury.

Journal: Cell death & disease

Authors' code: OpenGene/fastp (MIT), gpertea/gffcompare (MIT)

Status: code verified, 100 files readable

[18511] doi:10.1038/s41420-025-02425-9 [paper]

Sex and age differences in glia and myelin in nonhuman primate and human spinal cords: implications for pathology.

Journal: Cell death discovery

Status: code on request

[18512] doi:10.1038/s41467-025-57751-4 [paper, repository]

Cross-ancestry genome-wide association study identifies implications of SORL1 in cerebral beta-amyloid deposition.

Journal: Nature communications

Authors' code: FelixKrueger/TrimGalore (GPL-3.0), hail-is/hail (MIT), RajLabMSSM/QTL-mapping-pipeline (no license), Zenodo 14791596 (CC-BY-4.0), wonlab101/abetagwas_public_release (no license)

Status: code verified, 1,729 files readable, 11 matches

[18513] doi:10.1038/s41467-025-58333-0 [paper, data]

Molecular insights into the α6β4 nicotinic acetylcholine receptor function and ligand recognition.

Journal: Nature communications

Status: data only, 6 datasets cited

[18514] doi:10.1038/s41467-025-58383-4 [paper, data]

Inhibition of tau neuronal internalization using anti-tau single domain antibodies.

Journal: Nature communications

Status: data only, 1 dataset cited

[18515] doi:10.1038/s41467-025-58384-3 [paper]

Distinct ventral tegmental area neuronal ensembles are indispensable for reward-driven approach and stress-driven avoidance behaviors.

Journal: Nature communications

Status: code on request

[18516] doi:10.1038/s41537-025-00581-6 [paper, repository]

The MR neuroimaging protocol for the Accelerating Medicines Partnership® Schizophrenia Program.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: AMP-SCZ/qqc (Apache-2.0), ampscz.org (no license)

Status: code verified, 75 files readable, 3 matches

[18517] doi:10.1038/s41539-025-00309-2 [paper, repository]

Long-term cognitive and neurophysiological effects of mental rotation training.

Journal: NPJ science of learning

Authors' code: OSF u8bvr (no license), OSF dk34q (no license)

Status: code verified, 8 files readable, 2 matches

[18518] doi:10.1038/s41562-025-02157-x [paper, repository]

Human motor cortex encodes complex handwriting through a sequence of stable neural states.

Journal: Nature human behaviour

Authors' code: Zenodo 14865736 (Apache-2.0)

Status: code verified

[18519] doi:10.1038/s41586-025-08828-z [paper, repository]

A neural mechanism for learning from delayed postingestive feedback.

Journal: Nature

Authors' code: abria/TeraStitcher (other), SuperElastix/elastix (Apache-2.0), ChristophKirst/ClearMap2 (GPL-3.0), seung-lab/cloud-volume (BSD-3-Clause), bastibe/Violinplot-Matlab (BSD-3-Clause), cazimmerman/cta (no license), bichanw/cta (no license)

Status: code verified, 2,007 files readable, 9 matches

[18520] doi:10.1038/s41598-025-89911-3 [paper, data]

Machine learning fusion for glioma tumor detection.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18521] doi:10.1038/s41598-025-95779-0 [paper, data]

Enhanced prediction of ventilator-associated pneumonia in patients with traumatic brain injury using advanced machine learning techniques.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18522] doi:10.1038/s42003-025-07956-6 [paper, repository]

Power-law adaptation in the presynaptic vesicle cycle.

Journal: Communications biology

Authors' code: Priesemann-Group/synaptic_power_law_adaptation (no license)

Status: code verified, 30 files readable, 4 matches

[18523] doi:10.1073/pnas.2416738122 [paper, data]

Phosphatidylinositol 4,5-bisphosphate activation mechanism of human KCNQ5.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 9 datasets cited

[18524] doi:10.1073/pnas.2500880122 [paper, repository]

microRNA-218-5p coordinates scaling of excitatory and inhibitory synapses during homeostatic synaptic plasticity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 14933977 (CC-BY-4.0), Zenodo 8167635 (other-open), dcolam/mir-218_scripts (no license)

Status: code verified, 24 files readable, 14 matches

[18525] doi:10.1098/rsbl.2024.0617 [paper, repository]

Evolution of cellular architecture and function of the hippocampus: insights from the artificial selection experiment.

Journal: Biology letters

Authors' code: doi:10.6084/m9.figshare.c.7738852 (no license)

Status: code found, still to be checked

[18526] doi:10.1111/php.14097 [paper, data]

Integrin targeted photodynamic therapy in patient-derived glioblastoma spheroids.

Journal: Photochemistry and photobiology

Status: data only, 1 dataset cited

[18527] doi:10.1113/jp286407 [paper, repository]

Activation of TRPA1 and TRPM3 triggers Ca<sup>2+</sup> waves in central terminals of sensory neurons and facilitates synaptic activity in the spinal dorsal horn.

Journal: The Journal of physiology

Authors' code: Zenodo 14752276 (MIT)

Status: code verified, 25 files readable

[18528] doi:10.1117/1.jbo.30.4.046004 [paper, data]

Elucidating the effect of tumor and background region-of-interest selection on the performance metrics used to assess fluorescence imaging.

Journal: Journal of biomedical optics

Status: data only, 1 dataset cited

[18529] doi:10.1126/sciadv.adi9683 [paper, repository]

Neuroecology of alcohol risk and reward: Methanol boosts pheromones and courtship success in <i>Drosophila melanogaster</i>.

Journal: Science advances

Authors' code: ma-tech/Woolz (GPL-2.0)

Status: code verified, 639 files readable

[18530] doi:10.1126/sciadv.adr3903 [paper, repository]

Neural heterogeneity enhances reliable neural information processing: Local sensitivity and globally input-slaved transient dynamics.

Journal: Science advances

Authors' code: Zenodo 14054851 (CC-BY-4.0)

Status: code verified, 194 files readable, 3 matches

[18531] doi:10.1126/sciadv.adt0200 [paper, repository]

Chronic ethanol exposure produces sex-dependent impairments in value computations in the striatum.

Journal: Science advances

Authors' code: DartmouthCCNL/trepka_etal_natcomm_2021 (MIT), Zenodo 14188121 (CC-BY-4.0)

Status: code verified, 111 files readable

[18532] doi:10.1126/sciadv.adu3793 [paper, repository]

Autism-like atypical face processing in <i>Shank3</i> mutant dogs.

Journal: Science advances

Authors' code: Zenodo 14631158 (MIT)

Status: code verified

[18533] doi:10.1162/nol_a_00161 [paper, repository]

The Effects of Prenatal Alcohol Exposure on Structural Brain Connectivity and Early Language Skills in a South African Birth Cohort.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: ghasoub-m/CT_Connectome_manuscript (no license)

Status: code verified, 1 file readable

[18534] doi:10.1177/17470218251333429 [paper, repository]

Post-loss speeding and neurophysiological markers of action preparation and outcome processing in probabilistic reversal learning.

Journal: Quarterly journal of experimental psychology (2006)

Authors' code: OSF c27wu (no license)

Status: code verified, 1 file readable

[18535] doi:10.1186/s13293-025-00703-w [paper, data]

Parental kynurenine 3-monooxygenase genotype in mice directs sex-specific behavioral outcomes in offspring.

Journal: Biology of sex differences

Status: data only, 1 dataset cited

[18536] doi:10.1186/s13293-025-00705-8 [paper, data]

Hippo-vgll3 signaling may contribute to sex differences in Atlantic salmon maturation age via contrasting adipose dynamics.

Journal: Biology of sex differences

Status: data only, 2 datasets cited

[18537] doi:10.1210/jendso/bvaf056 [paper, repository]

The Glucagon Receptor Is Expressed in the Frontal Cortex and Impaired Signaling Associates With Cognitive Decline.

Journal: Journal of the Endocrine Society

Authors' code: nicwin98/UK-Biobank-GCG (no license)

Status: dead link

[18538] doi:10.1371/journal.pbio.3003050 [paper, repository]

Social knowledge about others is anchored to self-knowledge in the hippocampal formation.

Journal: PLoS biology

Authors' code: rsagroup/rsatoolbox (MIT)

Status: code verified, 138 files readable

[18539] doi:10.1371/journal.pone.0300494 [paper, data]

Repeated exposure decreases aesthetic chills likelihood but increases intensity.

Journal: PloS one

Status: data only, 1 dataset cited

[18540] doi:10.1371/journal.pone.0319826 [paper, repository]

Efficient quantification of Parkinson's disease severity using augmented time-series data.

Journal: PloS one

Authors' code: colarpink/Efficient-Quantification-of-Parkinson-s-Disease-Severity-Using-Augmented-Time-Series-Data (no license)

Status: dead link

[18541] doi:10.1523/jneurosci.2406-23.2025 [paper, repository]

Memory Boost for Recurring Emotional Events Is Driven by Initial Amygdala Response Promoting Stable Neocortical Patterns across Repetitions.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Zenodo 10210565 (CC-BY-4.0), valentinakrenz/recurrentemotionalmemoryencoding (no license)

Status: code verified, 94 files readable, 14 matches

[18542] doi:10.3389/fgene.2025.1522729 [paper, repository]

Improving accuracy and precision of heritability estimation in twin studies through hierarchical modeling: reassessing the measurement error assumption.

Journal: Frontiers in genetics

Authors' code: afni/apaper_heritability (no license)

Status: empty repository, 1 file readable

[18543] doi:10.3389/fimmu.2025.1557483 [paper, data]

Exploring the role of EBV in multiple sclerosis pathogenesis through EBV interactome.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[18544] doi:10.3389/fnins.2025.1522964 [paper, data]

Channel component correlation analysis for multi-channel EEG feature component extraction.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[18545] doi:10.3390/biomedicines13040860 [paper, data]

Neurotropic Effects of Cortexin on Models of Mental and Physical Developmental Delay.

Journal: Biomedicines

Status: data only, 1 dataset cited

[18546] doi:10.3390/brainsci15040370 [paper, data]

The Effect of Dopaminergic Therapy in Parkinson's Disease: A Graph Theory Analysis.

Journal: Brain sciences

Status: data only, 1 dataset cited

[18547] doi:10.34133/research.0659 [paper, repository]

Transcriptional Patterns of Nodal Entropy Abnormalities in Major Depressive Disorder Patients with and without Suicidal Ideation.

Journal: Research (Washington, D.C.)

Authors' code: guominxinxinxin/edge-centric-brain-functional (no license)

Status: code verified, 14 files readable, 3 matches

[18548] doi:10.7554/elife.92536 [paper, data]

Redox regulation and dynamic control of brain-selective kinases BRSK1/2 in the AMPK family through cysteine-based mechanisms.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 1 April 2025 (111 papers, 44 on this page)

[18549] doi:10.1001/jamanetworkopen.2025.5364 [paper, repository]

Sex, Neural Networks, and Behavioral Symptoms Among Adolescents With Multisite Pain.

Journal: JAMA network open

Authors' code: OSF fdjqu (no license)

Status: empty repository

[18550] doi:10.1002/alz.70109 [paper, repository]

Addressing overfitting bias due to sample overlap in polygenic risk scoring.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: leelabsg/OAPRS (other)

Status: code verified, 12 files readable

[18551] doi:10.1002/alz.70117 [paper, data]

Platelets mirror changes in the frontal lobe antioxidant system in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[18552] doi:10.1002/alz.70130 [paper, repository]

The effect of Alzheimer's disease genetic factors on limbic white matter microstructure.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Zenodo 13863955 (CC-BY-4.0)

Status: code verified

[18553] doi:10.1002/alz.70143 [paper, repository]

Analyzing heterogeneity in Alzheimer disease using multimodal normative modeling on imaging-based ATN biomarkers.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: ysu001/PUP (BSD-3-Clause)

Status: code verified, 277 files readable

[18554] doi:10.1002/alz.70171 [paper, data]

Exploring inflammation-related protein expression and its relationship with TSPO PET in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[18555] doi:10.1002/alz.70196 [paper, repository]

Cognitive implications and associated transcriptomic signatures of distinct regional iron depositions in cerebral small vessel disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: pboutinaud/SHiVAi (AGPL-3.0), LuuuXG/Brain-Imaging-Transcriptomics-Scripts (MIT), netneurolab/neuromaps (CC-BY-NC-SA-4.0)

Status: code verified, 163 files readable, 16 matches

[18556] doi:10.1002/alz.70198 [paper, repository]

Genome-wide association analysis identifies APOE as a mitophagy modifier in Lewy body disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: ORossLab/PhosphoUb-GWAS (no license)

Status: code verified, 2 files readable

[18557] doi:10.1002/bimj.70031 [paper, repository]

Spatially Informed Nonnegative Matrix Trifactorization for Coclustering Mass Spectrometry Data.

Journal: Biometrical journal. Biometrische Zeitschrift

Authors' code: Fradenti/TRIFASE (other)

Status: code verified, 10 files readable

[18558] doi:10.1002/brb3.70448 [paper, data]

The Feasibility and Test-Retest Reliability of Wireless Dry-Electrode EEG During a Dynamic Psychomotor Virtual Reality Task.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[18559] doi:10.1002/brb3.70466 [paper, repository]

Normative Modeling Reveals Age-Atypical Cortical Thickness Differences Between Hepatic Steatosis and Fibrosis in Non-Alcoholic Fatty Liver Disease.

Journal: Brain and behavior

Authors' code: predictive-clinical-neuroscience/pcntoolkit-demo (GPL-3.0)

Status: code verified, 13 files readable, 2 matches

[18560] doi:10.1002/cne.70046 [paper, repository]

Evidence for Auditory Stimulus-Specific Adaptation But Not Deviance Detection in Larval Zebrafish Brains.

Journal: The Journal of comparative neurology

Authors' code: stednitzs/oddball (no license)

Status: code verified, 8 files readable

[18561] doi:10.1002/cph4.70009 [paper, data]

Synergistic Effects of Riluzole and Sodium Butyrate on Barrier Function and Disease Progression of Amyotrophic Lateral Sclerosis Through the Gut-Neuron Axis.

Journal: Comprehensive Physiology

Status: data only, 1 dataset cited

[18562] doi:10.1002/dad2.70103 [paper, repository]

Association of RDoC dimensions with <i>post mortem</i> brain transcriptional profiles in Alzheimer's disease.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: thmccoy/CQH-Dimensional-Phenotyper (GPL-3.0), bcbio/bcbio-nextgen (MIT), klengellab/RDoC_RNAseq (no license)

Status: code verified, 325 files readable, 4 matches

[18563] doi:10.1002/epi4.70028 [paper, data]

A public benchmark for human performance in the detection of focal cortical dysplasia.

Journal: Epilepsia open

Status: data only, 2 datasets cited

[18564] doi:10.1002/hbm.70161 [paper, repository]

A New Multiple Imputation Method for High-Dimensional Neuroimaging Data.

Journal: Human brain mapping

Authors' code: TongLu-bit/HighDim-MultipleImputation-HIMA (no license)

Status: code verified, 6 files readable, 3 matches

[18565] doi:10.1002/hbm.70166 [paper, repository]

The Shape of the Brain's Connections Is Predictive of Cognitive Performance: An Explainable Machine Learning Study.

Journal: Human brain mapping

Authors' code: pnlbwh/ukftractography (other), SlicerDMRI/whitematteranalysis (other), SlicerDMRI/TractShapeCognition (no license)

Status: code verified, 226 files readable, 2 matches

[18566] doi:10.1002/hbm.70167 [paper, repository]

Identification of Cortical Targets for Modulating Function Supported by the Human Hippocampal Network.

Journal: Human brain mapping

Authors' code: fahsuanlin/hippocampal_network_for_TMS (no license)

Status: empty repository, 1 file readable

[18567] doi:10.1002/hbm.70168 [paper, repository]

Effects of Aging, Estimated Fitness, and Cerebrovascular Status on White Matter Microstructural Health.

Journal: Human brain mapping

Authors' code: OSF j9psq (no license)

Status: code found, still to be checked

[18568] doi:10.1002/hbm.70187 [paper, repository]

Sensitivity of Quantitative Susceptibility Mapping for Clinical Research in Deep Gray Matter.

Journal: Human brain mapping

Authors' code: Zenodo 11077423 (CC-BY-4.0)

Status: empty repository

[18569] doi:10.1002/hbm.70190 [paper, repository]

A Framework for Comparison and Interpretation of Machine Learning Classifiers to Predict Autism on the ABIDE Dataset.

Journal: Human brain mapping

Authors' code: SamitHuang/EV_GCN (GPL-3.0), YilanDong19/Machine-learning-with-ABIDE (no license)

Status: code verified, 21 files readable, 6 matches

[18570] doi:10.1002/hbm.70193 [paper, repository]

Machine Learning-Based Clustering of Layer-Resolved fMRI Activation and Functional Connectivity Within the Primary Somatosensory Cortex in Nonhuman Primates.

Journal: Human brain mapping

Authors' code: arimishra/repositoryHBM (no license)

Status: dead link

[18571] doi:10.1002/hbm.70199 [paper, repository]

Temporal Structure of Music Improves the Cortical Encoding of Speech.

Journal: Human brain mapping

Authors' code: figshare 22740353 (CC-BY-4.0)

Status: code verified, 9 files readable, 2 matches

[18572] doi:10.1002/hbm.70201 [paper, repository]

TractCloud-FOV: Deep Learning-Based Robust Tractography Parcellation in Diffusion MRI With Incomplete Field of View.

Journal: Human brain mapping

Authors' code: pnlbwh/ukftractography (other), SlicerDMRI/whitematteranalysis (other), SlicerDMRI/TractCloud-FOV (no license)

Status: code verified, 226 files readable, 2 matches

[18573] doi:10.1002/hbm.70203 [paper, repository]

Cross-Sectional Brain Age Assessments Are Limited in Predicting Future Brain Change.

Journal: Human brain mapping

Authors' code: reisert/baydiff (BSD-2-Clause)

Status: code verified, 19 files readable, 2 matches

[18574] doi:10.1002/hbm.70207 [paper, repository]

Subthalamic Deep Brain Stimulation: Mapping Non-Motor Outcomes to Structural Connections.

Journal: Human brain mapping

Authors' code: netstim/leaddbs (GPL-3.0)

Status: code verified, 2,000 files readable, 7 matches

[18575] doi:10.1002/hbm.70209 [paper, data]

The Role of the Dorsolateral Prefrontal Cortex in Ego Dissolution and Emotional Arousal During the Psychedelic State.

Journal: Human brain mapping

Status: code on request, 2 datasets cited

[18576] doi:10.1002/hbm.70210 [paper, data]

Mapping Contributions of the Anterior Temporal Semantic Hub to the Processing of Abstract and Concrete Verbs.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[18577] doi:10.1002/hbm.70212 [paper, repository]

WMH-DualTasker: A Weakly Supervised Deep Learning Model for Automated White Matter Hyperintensities Segmentation and Visual Rating Prediction.

Journal: Human brain mapping

Authors' code: hzlab/WMH-DualTasker (no license)

Status: code verified, 12 files readable, 2 matches

[18578] doi:10.1002/hbm.70214 [paper, repository]

Volumetric Changes in Cerebellar Transverse Zones: Age and Sex Effects in Health and Neurological Disorders.

Journal: Human brain mapping

Authors' code: Beheshtiiman2/Bias-Correction-in-Brain-Age-Estimation-Frameworks (no license)

Status: code verified, 2 files readable

[18579] doi:10.1002/mds.30171 [paper, data]

Motor Cortex Disinhibition Correlates with Olfactory Dysfunction in Parkinson's Disease.

Journal: Movement disorders : official journal of the Movement Disorder Society

Status: data only, 2 datasets cited

[18580] doi:10.1002/nbm.70011 [paper, data]

Quasi-Diffusion Imaging: Application to Ultra-High b-Value and Time-Dependent Diffusion Images of Brain Tissue.

Journal: NMR in biomedicine

Status: data only, 1 dataset cited

[18581] doi:10.1002/smi.70035 [paper, data]

Chronic Stress May Amplify Gender/Sex Differences in Amygdala Reactivity to Ambiguous Emotional Stimuli.

Journal: Stress and health : journal of the International Society for the Investigation of Stress

Status: data only, 1 dataset cited

[18582] doi:10.1007/s00018-025-05665-1 [paper, repository]

Genome-wide profiling and functional characterization of circular RNAs in neural development and injury: insights from a rat model research.

Journal: Cellular and molecular life sciences : CMLS

Authors' code: figshare 25952245 (CC-BY-4.0)

Status: code verified

[18583] doi:10.1007/s10115-025-02405-6 [paper, repository]

Restless reachability problems in temporal graphs.

Journal: Knowledge and information systems

Authors' code: suhastheju/restless-reachability (no license)

Status: code verified, 7 files readable, 3 matches

[18584] doi:10.1007/s12021-025-09722-9 [paper, repository]

Genetic Insights into Brain Morphology: a Genome-Wide Association Study of Cortical Thickness and T<sub>1</sub>-Weighted MRI Gray Matter-White Matter Intensity Contrast.

Journal: Neuroinformatics

Authors' code: lmcinnes/umap (BSD-3-Clause)

Status: code verified, 65 files readable, 2 matches

[18585] doi:10.1016/j.bpsgos.2025.100495 [paper, repository]

Rare Copy Number Variants Reveal Critical Cell Types and Periods of Brain Development in Neurodevelopmental Disorders.

Journal: Biological psychiatry global open science

Authors' code: satijalab/seurat (other)

Status: code verified, 136 files readable

[18586] doi:10.1016/j.crmeth.2025.101023 [paper]

A cost- and time-efficient method for high-throughput cryoprocessing and tissue analysis using multiplexed tissue molds.

Journal: Cell reports methods

Status: code on request

[18587] doi:10.1016/j.ebiom.2025.105648 [paper, data]

The severity of SLC1A2-associated neurodevelopmental disorders correlates with transporter dysfunction.

Journal: EBioMedicine

Status: data only, 2 datasets cited

[18588] doi:10.1016/j.ijchp.2025.100581 [paper]

Executive functions modulate conditioned fear extinction and reinstatement: The differential roles of shifting, updating, and inhibition.

Journal: International journal of clinical and health psychology : IJCHP

Status: code on request

[18589] doi:10.1016/j.nicl.2025.103775 [paper]

Efficacy of cognitive rehabilitation in cognition and brain networks: A randomised clinical trial in patients with multiple sclerosis.

Journal: NeuroImage. Clinical

Status: code on request

[18590] doi:10.1016/j.xcrm.2025.102052 [paper, data]

Catalytic neural stem cell exosomes for multi-stage targeting and synergistical therapy of retinal ischemia-reperfusion injury.

Journal: Cell reports. Medicine

Status: code on request, 2 datasets cited

[18591] doi:10.1038/s41467-025-58270-y [paper, repository]

Dynamic coding and sequential integration of multiple reward attributes by primate amygdala neurons.

Journal: Nature communications

Authors' code: figshare 28282274 (CC-BY-4.0)

Status: code verified, 4 files readable, 2 matches

[18592] doi:10.1038/s41593-025-01930-5 [paper, repository]

Mechanisms of experience-dependent place-cell referencing in hippocampal area CA1.

Journal: Nature neuroscience

Authors' code: FishQian/CA12025Paper_SpaceGoalReferencing (no license)

Status: code verified, 42 files readable, 7 matches

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