Every paper, by date: page 85

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 85 of 200: 26 March 2025 to 17 March 2025.

Wednesday, 26 March 2025 (47 papers, 9 on this page)

[18817] doi:10.1371/journal.pone.0320492 [paper, data]

Neural correlates of frailty in cognitively healthy adults: A multimodal imaging study.

Journal: PloS one

Status: data only, 1 dataset cited

[18818] doi:10.3390/ijms26073019 [paper, repository]

Mitochondrial Small RNA Alterations Associated with Increased Lysosome Activity in an Alzheimer's Disease Mouse Model Uncovered by PANDORA-seq.

Journal: International journal of molecular sciences

Authors' code: junchaoshi/sports1.1 (GPL-3.0)

Status: code verified, 17 files readable, 1 match

[18819] doi:10.3390/s25072063 [paper, data]

Phantom-Based Approach for Comparing Conventional and Optically Pumped Magnetometer Magnetoencephalography Systems.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[18820] doi:10.3390/s25072083 [paper, data]

Optimizing Depression Classification Using Combined Datasets and Hyperparameter Tuning with Optuna.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[18821] doi:10.3758/s13415-025-01275-3 [paper, repository]

A transcranial magnetic stimulation study on the role of the right angular gyrus in orienting and reorienting of attention toward threat.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF gbyhj (no license)

Status: code verified, 2 files readable, 3 matches

[18822] doi:10.3758/s13415-025-01285-1 [paper, repository]

People display consistent recency and primacy effects in behavior and neural activity across perceptual and value-based judgments.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF 38ugk (no license)

Status: code verified, 40 files readable, 2 matches

[18823] doi:10.7554/elife.78076 [paper, repository]

Network segregation is associated with processing speed in the cognitively healthy oldest-old.

Journal: eLife

Authors' code: Visscher-Lab/MBAR_oldestold_nodes (GPL-3.0), Visscher-Lab/MBAR_segregation_paper (GPL-3.0)

Status: code verified, 10 files readable, 4 matches

[18824] doi:10.7554/elife.90269 [paper, repository]

Auditory cortex anatomy reflects multilingual phonological experience.

Journal: eLife

Authors' code: OSF uc52f (no license)

Status: code verified, 15 files readable, 4 matches

[18825] doi:10.7717/peerj.19138 [paper, data]

Electroencephalographic power spectrum patterns related to the intelligence of children with learning disorders.

Journal: PeerJ

Status: data only, 1 dataset cited

Tuesday, 25 March 2025 (27 papers)

[18826] doi:10.1002/bit.28979 [paper, data]

ETV2 Overexpression Promotes Efficient Differentiation of Pluripotent Stem Cells to Endothelial Cells.

Journal: Biotechnology and bioengineering

Status: data only, 1 dataset cited

[18827] doi:10.1007/s00415-025-13045-9 [paper, data]

Vestibular dysfunction: a hidden risk factor for Alzheimer's disease.

Journal: Journal of neurology

Status: data only, 1 dataset cited

[18828] doi:10.1007/s00415-025-13046-8 [paper]

Cerebellar dysfunction in frontotemporal dementia: intra-cerebellar pathology and cerebellar network degeneration.

Journal: Journal of neurology

Status: code on request

[18829] doi:10.1016/j.isci.2025.112282 [paper, repository]

Dissociating external and internal attentional selection.

Journal: iScience

Authors' code: OSF yrh6v (no license)

Status: code verified, 79 files readable, 7 matches

[18830] doi:10.1016/j.isci.2025.112287 [paper, repository]

Proteomic insights into the environmental adaptation of the subtropical brain coral host <i>Platygyra carnosa</i>.

Journal: iScience

Authors' code: EveeeeMa/iScience_coral (no license)

Status: code verified, 3 files readable

[18831] doi:10.1038/s41398-025-03308-4 [paper]

Intravenous psilocybin induces dose-dependent changes in functional network organization in rat cortex.

Journal: Translational psychiatry

Status: code on request

[18832] doi:10.1038/s41467-025-57497-z [paper, data]

Dynamic synthesis and transport of phenazine-1-carboxylic acid to boost extracellular electron transfer rate.

Journal: Nature communications

Status: data only, 2 datasets cited

[18833] doi:10.1038/s41467-025-58176-9 [paper, repository]

A network correspondence toolbox for quantitative evaluation of novel neuroimaging results.

Journal: Nature communications

Authors' code: rubykong/cbig_network_correspondence (MIT), rubykong.github.io/cbig_network_correspondence (no license)

Status: code verified, 10 files readable, 2 matches

[18834] doi:10.1038/s41467-025-58290-8 [paper, data]

Restoration of retinal regenerative potential of Müller glia by disrupting intercellular Prox1 transfer.

Journal: Nature communications

Status: data only, 1 dataset cited

[18835] doi:10.1038/s41598-025-94188-7 [paper, repository]

Connexin 43 is downregulated in advanced Parkinson's disease in multiple brain regions which correlates with symptoms.

Journal: Scientific reports

Authors' code: WaylandM/Connexin_43_pathology_in_late-stage_human_Parkinsons_brains (GPL-3.0)

Status: code verified, 14 files readable, 8 matches

[18836] doi:10.1038/s41598-025-94643-5 [paper, repository]

A plug and play fuzzy mask extraction module for single image deraining.

Journal: Scientific reports

Authors' code: hongwang01 (no license), mendy-2013/PnP-fuzzy-mask-extractor (no license)

Status: code verified, 98 files readable

[18837] doi:10.1038/s42003-025-07876-5 [paper, repository]

Longitudinal excitation-inhibition balance altered by sex and APOE-ε4.

Journal: Communications biology

Authors' code: Drew4495/OASIS_Longitudinal_Analysis_2024 (no license)

Status: code verified, 6 files readable, 1 match

[18838] doi:10.1073/pnas.2426786122 [paper, data]

Acute TREM2 inhibition depletes MAFB-high microglia and hinders remyelination.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[18839] doi:10.1093/braincomms/fcaf121 [paper, repository]

Stratifying risk of Alzheimer's disease in healthy middle-aged individuals with machine learning.

Journal: Brain communications

Authors' code: pathology-dynamics/cogdec (no license)

Status: code verified, 7 files readable, 2 matches

[18840] doi:10.1093/narmme/ugaf008 [paper, repository]

High-throughput transcriptome analysis reveals a developmental increase in Acvr1c which mediates epigenetic repression of the gene encoding the pubertal brake, Makorin ring finger protein 3.

Journal: NAR molecular medicine

Authors' code: figshare 28623272 (CC-BY-4.0)

Status: code verified, 2 files readable, 2 matches

[18841] doi:10.1093/pnasnexus/pgaf101 [paper, repository]

Collective decision making by embodied neural agents.

Journal: PNAS nexus

Authors' code: ppsp-team/PyHKBs (BSD-3-Clause)

Status: code verified, 28 files readable, 3 matches

[18842] doi:10.1117/1.nph.12.2.025001 [paper]

Shallow-angle intracranial cannula for repeated infusion and <i>in vivo</i> imaging with multiphoton microscopy.

Journal: Neurophotonics

Status: code on request

[18843] doi:10.1152/jn.00052.2025 [paper, repository]

Distinct firing responses to synthetic synaptic currents in the adult murine reticular and relay thalamus.

Journal: Journal of neurophysiology

Authors' code: Zenodo 13942488 (CC-BY-4.0)

Status: code verified

[18844] doi:10.1172/jci.insight.173484 [paper]

SEC24C deficiency causes trafficking and glycosylation abnormalities in an epileptic encephalopathy with cataracts and dyserythropoeisis.

Journal: JCI insight

Status: code on request

[18845] doi:10.1186/s12864-025-11496-y [paper, data]

Genome-wide chromatin accessibility and selective signals of meat rabbits reveal key Cis-regulatory elements and variants during postnatal development of skeletal muscles in rabbits.

Journal: BMC genomics

Status: data only, 1 dataset cited

[18846] doi:10.12688/f1000research.162306.1 [paper, data]

Machine learning based radiomics approach for outcome prediction of meningioma - a systematic review.

Journal: F1000Research

Status: data only, 1 dataset cited

[18847] doi:10.1371/journal.pone.0304449 [paper, repository]

A Riemannian framework for incorporating white matter bundle prior in orientation distribution function based tractography algorithms.

Journal: PloS one

Authors' code: Inria-Empenn/Anima-Public (AGPL-3.0), todurante/Durantel_PlosOne_2024 (no license)

Status: code verified, 273 files readable, 4 matches

[18848] doi:10.1523/eneuro.0382-24.2025 [paper, repository]

Whole-Brain Mapping in Adult Zebrafish and Identification of the Functional Brain Network Underlying the Novel Tank Test.

Journal: eNeuro

Authors' code: doi:10.5061/dryad.k3j9kd5js (no license), Zenodo 14674307 (MIT)

Status: code verified, 2 files readable

[18849] doi:10.1523/eneuro.0504-24.2025 [paper, data]

<i>Gfap</i> Mutation and Astrocyte Dysfunction Lead to a Neurodegenerative Profile with Impaired Synaptic Plasticity and Cognitive Deficits in a Rat Model of Alexander Disease.

Journal: eNeuro

Status: data only, 1 dataset cited

[18850] doi:10.3389/fmicb.2025.1534513 [paper]

Clinical application of metagenomic next-generation sequencing in rapid diagnosis and prognostic assessment of herpes simplex encephalitis.

Journal: Frontiers in microbiology

Status: data only

[18851] doi:10.3390/bios15040209 [paper]

Pattern Recognition of Neurotransmitters: Complexity Reduction for Serotonin and Dopamine.

Journal: Biosensors

Status: code on request

[18852] doi:10.4103/nrr.nrr-d-24-01165 [paper, repository]

RBAD: The first database dedicated alterations of blood RNA in individuals with Alzheimer's disease and their clinical relevance.

Journal: Neural regeneration research

Authors' code: cran.r-project.org/package=dt (no license)

Status: code verified

Monday, 24 March 2025 (41 papers)

[18853] doi:10.1002/advs.202416350 [paper, repository]

RACK7 Interacts with PRC2 Complex to Regulate Astrocyte Development.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: tanghaibao/Goatools (BSD-2-Clause)

Status: code verified, 136 files readable, 2 matches

[18854] doi:10.1007/s00426-025-02104-5 [paper, repository]

Automatic imitation of vocal actions is unaffected by group membership.

Journal: Psychological research

Authors' code: OSF fpbam (no license)

Status: code verified, 5 files readable, 3 matches

[18855] doi:10.1007/s00426-025-02110-7 [paper, data]

Practice makes perfect, but to what end? Computerised brain training has limited cognitive benefits in healthy ageing.

Journal: Psychological research

Status: data only, 1 dataset cited

[18856] doi:10.1007/s12640-025-00741-7 [paper, data]

Mechanistic Analysis of Decabromodiphenyl Ether-Induced Neurotoxicity in Humans Using Network Toxicology and Molecular Docking.

Journal: Neurotoxicity research

Status: data only, 1 dataset cited

[18857] doi:10.1016/j.cccb.2025.100383 [paper, repository]

The relation between cerebral small vessel function and white matter microstructure in monogenic and sporadic small vessel disease - the ZOOM@SVDs study.

Journal: Cerebral circulation - cognition and behavior

Authors' code: psmd-marker.com (no license)

Status: code verified

[18858] doi:10.1016/j.isci.2025.112284 [paper, data]

Postnatal hyperosmolality alters development of hypothalamic feeding circuits with context-specific changes in ingestive behavior.

Journal: iScience

Status: code on request, 1 dataset cited

[18859] doi:10.1016/j.mex.2025.103277 [paper, data]

Deep reinforced cognitive analytics algorithm (DRCAM): An advanced method to early detection of cognitive skill impairment using deep learning and reinforcement learning.

Journal: MethodsX

Status: data only, 1 dataset cited

[18860] doi:10.1016/j.nbd.2025.106886 [paper, data]

Pre-existing DNA methylation signatures in the prefrontal cortex of alcohol-naïve nonhuman primates define neural vulnerability for future risky ethanol consumption.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[18861] doi:10.1016/j.redox.2025.103611 [paper, data]

Absence of astrocytic ceruloplasmin reverses the senescence process with aging of learning and memory abilities.

Journal: Redox biology

Status: data only, 1 dataset cited

[18862] doi:10.1016/j.xpro.2025.103712 [paper]

Protocol for evaluating neuronal activity and neurotransmitter release following amyloid-beta oligomer injections into the rat hippocampus.

Journal: STAR protocols

Status: code on request

[18863] doi:10.1017/s0033291724003131 [paper, repository]

Brain functional connectivity and anatomical features as predictors of cognitive behavioral therapy outcome for anxiety in youths.

Journal: Psychological medicine

Authors' code: zugmana/CPM-Anx (no license)

Status: dead link

[18864] doi:10.1038/s41467-025-57392-7 [paper, repository]

A generalized epilepsy network derived from brain abnormalities and deep brain stimulation.

Journal: Nature communications

Authors' code: lead-dbs.org (no license), jigongjun/Neuroimaging-and-Neuromodulation (no license), Zenodo 14252802 (CC-BY-4.0)

Status: code verified, 314 files readable

[18865] doi:10.1038/s41467-025-58265-9 [paper, repository]

Using machine learning to simultaneously quantify multiple cognitive components of episodic memory.

Journal: Nature communications

Authors' code: OSF 8vfy4 (no license)

Status: code verified, 13 files readable, 5 matches

[18866] doi:10.1038/s41562-025-02121-9 [paper, repository]

General anaesthesia decreases the uniqueness of brain functional connectivity across individuals and species.

Journal: Nature human behaviour

Authors' code: eamico/MEG_fingerprints (GPL-3.0), netneurolab/luppi-cognitive-matching (BSD-3-Clause), dominance-analysis/dominance-analysis (MIT), frantisekvasa/rotate_parcellation (MIT), neurospin/pypreclin (CECILL-2.1)

Status: code verified, 178 files readable, 8 matches

[18867] doi:10.1038/s41593-025-01893-7 [paper, repository]

Phase of firing does not reflect temporal order in sequence memory of humans and recurrent neural networks.

Journal: Nature neuroscience

Authors' code: mackelab/sequence_memory (no license), mackelab/sequence-memory (MIT)

Status: code verified, 22 files readable, 5 matches

[18868] doi:10.1038/s41593-025-01921-6 [paper, data]

Neural ensembles that encode nocifensive mechanical and heat pain in mouse spinal cord.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[18869] doi:10.1038/s41598-025-94252-2 [paper, data]

Study of autocorrelations and uncertainties applied to patients with Parkinson's disease.

Journal: Scientific reports

Status: data only, 2 datasets cited

[18870] doi:10.1038/s41598-025-94589-8 [paper]

A stable NTN1 fluorescent reporter chicken reveals cell specific molecular signatures during optic fissure closure.

Journal: Scientific reports

Status: data only

[18871] doi:10.1038/s41598-025-95350-x [paper, repository]

Parahippocampal-ventromedial prefrontal cortex functional coupling mediates the association between subjective time perception and delay discounting.

Journal: Scientific reports

Authors' code: canlab/MediationToolbox (no license)

Status: code verified, 202 files readable

[18872] doi:10.1038/s42255-025-01244-7 [paper, repository]

Reversible reduction in brain myelin content upon marathon running.

Journal: Nature metabolism

Authors' code: Zenodo 14726926 (CC-BY-4.0)

Status: code verified, 3 files readable

[18873] doi:10.1039/d4an01573h [paper, repository]

Evaluating sample normalization methods for MS-based multi-omics and the application to a neurodegenerative mouse model.

Journal: The Analyst

Authors' code: HaoGroup-ProtContLib (no license)

Status: code verified

[18874] doi:10.1073/pnas.2416215122 [paper, repository]

The visuomotor transformations underlying target-directed behavior.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: semmelhacklab/freezing_code (no license)

Status: code verified, 17 files readable, 2 matches

[18875] doi:10.1073/pnas.2423785122 [paper, data]

Neural basis for individual differences in the attention-enhancing effects of methylphenidate.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[18876] doi:10.1080/19336896.2025.2483215 [paper, data]

Specific early electroencephalogram for the diagnosis of sporadic Creutzfeldt-Jakob disease.

Journal: Prion

Status: data only, 1 dataset cited

[18877] doi:10.1111/camh.12763 [paper, repository]

Longitudinal effects of green, blue, and gray spaces on early adolescent mental health in the United States.

Journal: Child and adolescent mental health

Authors' code: OSF vfbxh (no license)

Status: empty repository

[18878] doi:10.1128/mbio.03906-24 [paper, data]

EV68-228-N monoclonal antibody treatment halts progression of paralysis in a mouse model of EV-D68 induced acute flaccid myelitis.

Journal: mBio

Status: data only, 1 dataset cited

[18879] doi:10.1136/jnnp-2023-332969 [paper, repository]

Genetics impact risk of Alzheimer's disease through mechanisms modulating structural brain morphology in late life.

Journal: Journal of neurology, neurosurgery, and psychiatry

Authors' code: rskl92/AD_BRAIN_BIDIRECTIONAL_MR (no license)

Status: code verified, 5 files readable, 3 matches

[18880] doi:10.1162/imag_a_00507 [paper, repository]

Opponent visuospatial coding structures responses during memory recall and visual perception in medial parietal cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF ypk6c (no license)

Status: code verified

[18881] doi:10.1162/imag_a_00512 [paper, repository]

The developing Human Connectome Project fetal functional MRI release: Methods and data structures.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: gin.g-node.org/kcl_cdb/fetal_brain_mri_atlas (no license), gin.g-node.org/kcl_cdb/dhcp_fetal_fmri_release_paper (no license), mriphysics/fetalphaseepi (MIT)

Status: code verified, 31 files readable, 2 matches

[18882] doi:10.1162/imag_a_00514 [paper, repository]

Self-supervised segmentation and characterization of fiber bundles in anatomic tracing data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: v-sundaresan/fiberbundle_seg_tracing (no license)

Status: code verified, 20 files readable, 1 match

[18883] doi:10.1162/imag_a_00515 [paper, repository]

Default mode network activation at task switches reflects mental task-set structure.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ashleyxzhou/DMN-TaskSwitch (MIT)

Status: code verified, 5 files readable

[18884] doi:10.1162/imag_a_00516 [paper]

Representational similarity analysis reveals cue-independent spatial representations for landmarks and self-motion cues in human retrosplenial cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[18885] doi:10.1186/s13040-025-00432-1 [paper, data]

High-dimensional mediation analysis reveals the mediating role of physical activity patterns in genetic pathways leading to AD-like brain atrophy.

Journal: BioData mining

Status: data only, 1 dataset cited

[18886] doi:10.1242/dmm.052169 [paper, data]

Deletion of sf3b4 causes splicing defects and gene dysregulation that disrupt craniofacial development and survival.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[18887] doi:10.3389/fimmu.2025.1538561 [paper]

Discovery of KDM5D as a novel biomarker for traumatic brain injury identified through bioinformatics analysis.

Journal: Frontiers in immunology

Status: data only

[18888] doi:10.3389/fnins.2025.1546559 [paper, data]

Recognition of brain activities via graph-based long short-term memory-convolutional neural network.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[18889] doi:10.3390/s25072029 [paper, data]

MSDSANet: Multimodal Emotion Recognition Based on Multi-Stream Network and Dual-Scale Attention Network Feature Representation.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[18890] doi:10.3892/ol.2025.14989 [paper]

Key genes altered in glioblastoma based on bioinformatics (Review).

Journal: Oncology letters

Status: data only

[18891] doi:10.52225/narra.v5i1.2178 [paper, data]

Efficacy of N-acetylcysteine and motivational enhancement therapy for nicotine addiction: A randomized clinical trial.

Journal: Narra J

Status: data only, 1 dataset cited

[18892] doi:10.7554/elife.99678 [paper, repository]

Spatial localization of hippocampal replay requires dopamine signaling.

Journal: eLife

Authors' code: Zenodo 10368995 (CC-BY-4.0)

Status: code verified, 6 files readable, 4 matches

[18893] doi:10.7717/peerj.19200 [paper, data]

Strain differences between C57Bl/6 and DBA/2 mice (<i>Mus musculus</i>) in delayed matching and nonmatching-to-position tasks: impact of sample responses and delay intervals.

Journal: PeerJ

Status: data only, 1 dataset cited

Sunday, 23 March 2025 (8 papers)

[18894] doi:10.1038/s41467-025-58295-3 [paper, repository]

Astrocyte-secreted cues promote neural maturation and augment activity in human forebrain organoids.

Journal: Nature communications

Authors' code: Zhengh-honghui/Codes_ACM_orgnaoids (no license), Zenodo 14968830 (CC-BY-4.0)

Status: code verified, 120 files readable, 11 matches

[18895] doi:10.1038/s41531-025-00912-5 [paper, data]

Voluntary exercise alleviates neural functional deficits in Parkinson's disease mice by inhibiting microglial ferroptosis via SLC7A11/ALOX12 axis.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[18896] doi:10.1038/s41597-025-04826-y [paper, data]

A multi-day and high-quality EEG dataset for motor imagery brain-computer interface.

Journal: Scientific data

Status: data only, 2 datasets cited

[18897] doi:10.1111/jne.70022 [paper, repository]

Early testosterone exposure during development advances myelination and affects neurogenesis of the vocal control motor path in male zebra finches (Taeniopygia guttata).

Journal: Journal of neuroendocrinology

Authors' code: CreanzaLab/chipper (GPL-3.0)

Status: code verified, 33 files readable

[18898] doi:10.1186/s12964-025-02137-8 [paper, data]

BDNF secreted by mesenchymal stem cells improves aged oocyte quality and development potential by activating the ERK1/2 pathway.

Journal: Cell communication and signaling : CCS

Status: data only, 1 dataset cited

[18899] doi:10.1186/s40478-025-01958-5 [paper, data]

Proximity proteomics reveals unique and shared pathological features between multiple system atrophy and Parkinson's disease.

Journal: Acta neuropathologica communications

Status: data only, 12 datasets cited

[18900] doi:10.14336/ad.2025.0201 [paper, data]

Soluble Epoxide Hydrolase Inhibition Improves Alzheimer's Disease Hallmarks: Correlation with Peripheral Inflammation and Gut Microbiota Modulation.

Journal: Aging and disease

Status: data only, 1 dataset cited

[18901] doi:10.3390/bioengineering12040334 [paper, repository]

Automated Foveal Avascular Zone Segmentation in Optical Coherence Tomography Angiography Across Multiple Eye Diseases Using Knowledge Distillation.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: kaggle.com/c/diabetic-retinopathy-detection (no license)

Status: dead link

Saturday, 22 March 2025 (12 papers)

[18902] doi:10.1002/ibra.12194 [paper, data]

Mapping the landscape of brain stimulation research: A global scientometric review on cognitive impairment.

Journal: Ibrain

Status: data only, 1 dataset cited

[18903] doi:10.1002/mco2.70139 [paper, data]

ATP11B Modulates Microglial Lipid Metabolism and Alleviates Alzheimer's Disease Pathology.

Journal: MedComm

Status: data only, 1 dataset cited

[18904] doi:10.1016/j.isci.2025.112268 [paper]

GABA<sub>A</sub>R-δ-subunit mediates increased GABAergic inhibition in cardiac DMV neurons after high-fat diet.

Journal: iScience

Status: code on request

[18905] doi:10.1016/j.isci.2025.112272 [paper, data]

Application of modular isoxazoline-β<sup>2,2</sup>-amino acid-based peptidomimetics as chemical model systems for studying the tau misfolding.

Journal: iScience

Status: data only, 2 datasets cited

[18906] doi:10.1016/j.isci.2025.112279 [paper, data]

The <i>Caenorhabditis elegans</i> neuronal GPCR OCTR-1 modulates longevity responses to both warm and cold temperatures.

Journal: iScience

Status: code on request, 1 dataset cited

[18907] doi:10.1038/s41467-025-57684-y [paper, data]

Radial glia integrin avb8 regulates cell autonomous microglial TGFβ1 signaling that is necessary for microglial identity.

Journal: Nature communications

Status: data only, 1 dataset cited

[18908] doi:10.1038/s41467-025-57937-w [paper, repository]

Spatiotemporal computations in the insect celestial compass.

Journal: Nature communications

Authors' code: codeocean:7664921 (no license)

Status: code found, still to be checked

[18909] doi:10.1038/s41467-025-58159-w [paper, repository]

Brain 5-hydroxymethylcytosine alterations are associated with Alzheimer's disease neuropathology.

Journal: Nature communications

Authors' code: ebi.ac.uk/gwas/studies (no license), Zhao-research/5hmC (no license), Zenodo 14804357 (CC-BY-4.0)

Status: code verified, 34 files readable, 6 matches

[18910] doi:10.1038/s41598-025-94267-9 [paper, data]

Brain tumor segmentation using multi-scale attention U-Net with EfficientNetB4 encoder for enhanced MRI analysis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18911] doi:10.1038/s42003-025-07866-7 [paper, repository]

Open-transmit and flexible receiver array for high resolution ultrahigh-field fMRI of the human sensorimotor cortex.

Journal: Communications biology

Authors' code: Fsyuee/VASO (no license)

Status: code verified, 8 files readable, 2 matches

[18912] doi:10.1111/epi.18367 [paper, repository]

Medication-resistant epilepsy is associated with a unique gut microbiota signature.

Journal: Epilepsia

Authors' code: eray-sahin/Medication-resistant_epilepsy_is_associated_with_a_unique_gut_microbiota_signature (GPL-3.0)

Status: code verified, 12 files readable, 10 matches

[18913] doi:10.3390/bioengineering12040331 [paper, repository]

Deep Learning-Enhanced Motor Training: A Hybrid VR and Exoskeleton System for Cognitive-Motor Rehabilitation.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: Pauliebre/Toph_ML (GPL-3.0)

Status: code verified, 18 files readable, 3 matches

Friday, 21 March 2025 (24 papers)

[18914] doi:10.1016/j.crmeth.2025.101012 [paper, repository]

An improved FLARE system for recording and manipulating neuronal activity.

Journal: Cell reports methods

Authors' code: Zenodo 14879778 (CC-BY-4.0), umyelab/LabGym (other)

Status: code verified, 286 files readable, 4 matches

[18915] doi:10.1016/j.nbd.2025.106882 [paper, data]

Small molecule ion channel agonist/antagonist screen reveals seizure suppression via glial Irk2 activation in a Drosophila model of Dup15q syndrome.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[18916] doi:10.1016/j.xpro.2025.103693 [paper, repository]

Protocol to study brain dynamics of mammals through the hierarchy of complex correlation patterns defining a robust functional architecture.

Journal: STAR protocols

Authors' code: vlewir/BrainDynamics_STARProtocols (MIT), igraph/python-igraph (GPL-2.0), neilernst/cliffsDelta (GPL-2.0), Zenodo 14031486 (CC-BY-4.0)

Status: code verified, 233 files readable, 20 matches

[18917] doi:10.1016/j.ynirp.2025.100252 [paper, repository]

Repeatability and reproducibility of brain age estimates in multiple sclerosis for three publicly available models.

Journal: Neuroimage. Reports

Authors' code: james-cole/brainageR (LGPL-3.0), vishnubashyam/DeepBrainNet (no license), MIDIconsortium/BrainAge (CC-BY-NC-ND-4.0)

Status: code verified, 19 files readable, 3 matches

[18918] doi:10.1038/s41398-025-03313-7 [paper]

Suprachiasmatic nucleus dysfunction induces anxiety- and depression-like behaviors via activating the BDNF-TrkB pathway of the striatum.

Journal: Translational psychiatry

Status: data only

[18919] doi:10.1038/s41592-025-02621-6 [paper, repository]

Connectivity of single neurons classifies cell subtypes in mouse brains.

Journal: Nature methods

Authors' code: YunZhixi98/Connectivity_Type (MIT), Vaa3D (no license)

Status: code verified, 13 files readable, 16 matches

[18920] doi:10.1038/s41597-025-04740-3 [paper, repository]

The interplay between brain and behavior during development: A multisite effort to generate and share simulated datasets.

Journal: Scientific data

Authors' code: socoden/simulation (MIT)

Status: code verified, 14 files readable, 12 matches

[18921] doi:10.1038/s42003-025-07914-2 [paper, repository]

Neuronal correlates of endogenous selective attention in the endbrain of crows.

Journal: Communications biology

Authors' code: ngl.psy.ruhr-uni-bochum.de/ngl/shareware (no license), Zenodo 13788459 (CC-BY-4.0)

Status: code verified, 21 files readable, 3 matches

[18922] doi:10.1038/s42003-025-07928-w [paper, repository]

Improving brain difference identification in autism spectrum disorder through enhanced head motion correction in ICA-AROMA.

Journal: Communications biology

Authors' code: lindenmp/rs-fMRI (MIT), haililihai/ASD_HeadMotionCorrection (no license), Zenodo 5517104 (other-open)

Status: code verified, 219 files readable, 11 matches

[18923] doi:10.1038/s43587-025-00844-y [paper, repository]

A systematic review with a Burden of Proof meta-analysis of health effects of long-term ambient fine particulate matter (PM<sub>2.5</sub>) exposure on dementia.

Journal: Nature aging

Authors' code: ihmeuw-msca/burden-of-proof (BSD-2-Clause), zhengp0/limetr (BSD-2-Clause), zhengp0/xspline (BSD-2-Clause)

Status: code verified, 245 files readable, 7 matches

[18924] doi:10.1073/pnas.2420313122 [paper, data]

ETV5 reduces androgen receptor expression and induces neural stem-like properties during neuroendocrine prostate cancer development.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[18925] doi:10.1126/sciadv.adi9885 [paper, repository]

Pathway-instructed therapeutic selection of ruxolitinib reduces neuroinflammation in fungal postinfectious inflammatory syndrome.

Journal: Science advances

Authors' code: Zenodo 14183256 (no license)

Status: code verified, 4 files readable, 2 matches

[18926] doi:10.1126/sciadv.adq0332 [paper, data]

Distinct attentional characteristics of neurons with visual feature coding in the primate brain.

Journal: Science advances

Status: data only, 1 dataset cited

[18927] doi:10.1126/sciadv.ads8149 [paper, repository]

Paramagnetic susceptibility measured by magnetic resonance imaging as an in vivo biomarker for iron pathology in epilepsy.

Journal: Science advances

Authors' code: Zenodo 14375619 (CC-BY-4.0)

Status: code verified

[18928] doi:10.1162/imag_a_00511 [paper, repository]

Deep Riemannian Networks for end-to-end EEG decoding.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: dcwil/eegspdnet (no license)

Status: code verified, 39 files readable, 8 matches

[18929] doi:10.1186/s10020-025-01142-4 [paper]

Runx2 drives Schwann cells repair phenotype switch through chromatin remodeling and Sox2 activation after nerve injury.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only

[18930] doi:10.1186/s13073-025-01448-2 [paper, repository]

Long-read sequencing identifies copy-specific markers of SMN gene conversion in spinal muscular atrophy.

Journal: Genome medicine

Authors' code: UMCUGenetics/HapSMA (MIT), UMCUGenetics/ManuscriptSMNGeneConversion (MIT)

Status: code verified, 23 files readable, 7 matches

[18931] doi:10.1186/s40478-025-01984-3 [paper, data]

Curative timed NK cell-based immunochemotherapy aborts brain tumour recurrence driven by mesenchymal glioma stem cells.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[18932] doi:10.1371/journal.pbio.3003005 [paper, repository]

Navigation strategies in Caenorhabditis elegans are differentially altered by learning.

Journal: PLoS biology

Authors' code: Zenodo 14542447 (CC-BY-4.0), kevin-sean-chen/chemotaxis_function (gnu)

Status: code verified, 290 files readable, 6 matches

[18933] doi:10.1523/eneuro.0449-24.2025 [paper, repository]

Alpha-Frequency Stimulation Enhances Synchronization of Alpha Oscillations with Default Mode Network Connectivity.

Journal: eNeuro

Authors' code: raacampbell/notBoxPlot (LGPL-3.0)

Status: code verified, 13 files readable

[18934] doi:10.3389/fmicb.2025.1557285 [paper, repository]

FACdb: a comprehensive resource for genes, gut microbiota, and metabolites in farm animals.

Journal: Frontiers in microbiology

Authors' code: FelixKrueger/TrimGalore (GPL-3.0)

Status: code verified, 31 files readable

[18935] doi:10.3389/fnins.2025.1499629 [paper, data]

Knowledge concept recognition in the learning brain via fMRI classification.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[18936] doi:10.7150/thno.106083 [paper]

A new nano-encapsulated TSPO ligand reduces neuroinflammation and improves cognitive functions in Alzheimer's disease model.

Journal: Theranostics

Status: code on request

[18937] doi:10.7554/elife.92892 [paper, repository]

The neural correlates of novelty and variability in human decision-making under an active inference framework.

Journal: eLife

Authors' code: andlab-um/FreeEnergyEEG (MIT)

Status: code verified, 12 files readable, 2 matches

Thursday, 20 March 2025 (37 papers)

[18938] doi:10.1002/acn3.70032 [paper, data]

Abnormal Synchronization Between Cortical Delta Power and Ripples in Hippocampal Sclerosis.

Journal: Annals of clinical and translational neurology

Status: data only, 1 dataset cited

[18939] doi:10.1007/s00422-025-01007-3 [paper, repository]

Optimal control for stochastic neural oscillators.

Journal: Biological cybernetics

Authors' code: UCSB-CASL/HH-Stochastic-Control (no license), Zenodo 14015566 (CC-BY-4.0), faranakr/hh-stochastic-control (no license)

Status: code verified, 50 files readable, 4 matches

[18940] doi:10.1016/j.dcn.2025.101554 [paper, repository]

Amygdala subregion volumes and apportionment in preadolescents - Associations with age, sex, and body mass index.

Journal: Developmental cognitive neuroscience

Authors' code: figshare 28628258 (CC-BY-4.0)

Status: empty repository

[18941] doi:10.1016/j.isci.2025.112252 [paper, repository]

The consequences of color chromaticity on electrophysiological measures of attentional deployment in visual search.

Journal: iScience

Authors' code: klabhub/bayesFactor (MIT)

Status: code verified, 46 files readable, 2 matches

[18942] doi:10.1016/j.isci.2025.112256 [paper, repository]

Atypical plume-like events contribute to glutamate accumulation in metabolic stress conditions.

Journal: iScience

Authors' code: gitlab.utwente.nl/m7686441/focalglutamate_modelsimulations (no license)

Status: code verified, 8 files readable, 2 matches

[18943] doi:10.1016/j.xcrm.2025.102031 [paper, repository]

Cerebrospinal fluid proteomics identification of biomarkers for amyloid and tau PET stages.

Journal: Cell reports. Medicine

Authors' code: Zenodo 14866417 (CC-BY-4.0), nanxstats/ggsci (GPL-3.0)

Status: code verified, 43 files readable, 1 match

[18944] doi:10.1016/j.xhgg.2025.100425 [paper]

Proteasomal activation ameliorates neuronal phenotypes linked to FBXO11-deficiency.

Journal: HGG advances

Status: code on request

[18945] doi:10.1038/s41467-025-57918-z [paper, data]

Regulatory T cells in the mouse hypothalamus control immune activation and ameliorate metabolic impairments in high-calorie environments.

Journal: Nature communications

Status: data only, 1 dataset cited

[18946] doi:10.1038/s41467-025-57995-0 [paper, repository]

Computational memory capacity predicts aging and cognitive decline.

Journal: Nature communications

Authors' code: braph-software/BRAPH-2 (other), braph-software/MemoryCapacity (no license), Zenodo 14616012 (CC-BY-4.0)

Status: code verified, 1,312 files readable, 4 matches

[18947] doi:10.1038/s41467-025-58034-8 [paper, repository]

Location-specific neural facilitation in marmoset auditory cortex.

Journal: Nature communications

Authors' code: ccg1988/LSF_Nature_Communications_2024 (no license), Zenodo 14737013 (CC-BY-4.0), ccg1988/lsf_nature_communications_2025 (no license)

Status: code verified, 74 files readable, 9 matches

[18948] doi:10.1038/s41467-025-58076-y [paper, data]

Transport and InsP₈ gating mechanisms of the human inorganic phosphate exporter XPR1.

Journal: Nature communications

Status: data only, 1 dataset cited

[18949] doi:10.1038/s41587-025-02565-4 [paper, data]

Spatial genomics of AAV vectors reveals mechanism of transcriptional crosstalk that enables targeted delivery of large genetic cargo.

Journal: Nature biotechnology

Status: data only, 1 dataset cited

[18950] doi:10.1038/s41597-025-04828-w [paper, data]

An fMRI dataset for appetite neural correlates in people living with Motor Neuron Disease.

Journal: Scientific data

Status: data only, 1 dataset cited

[18951] doi:10.1038/s41598-025-93033-1 [paper, repository]

Gauge equivariant convolutional neural networks for diffusion MRI.

Journal: Scientific reports

Authors' code: khanlab/dgcnn (no license)

Status: code verified, 45 files readable, 2 matches

[18952] doi:10.1038/s41598-025-93263-3 [paper, repository]

Cortico-subcortical networks that determine behavioral memory renewal are redefined by noradrenergic neuromodulation.

Journal: Scientific reports

Authors' code: johaubrich (no license)

Status: code verified

[18953] doi:10.1038/s41598-025-94580-3 [paper, repository]

Neural correlates of suppressing and imagining future threat.

Journal: Scientific reports

Authors' code: OSF 4q7d2 (no license)

Status: code verified, 9 files readable, 5 matches

[18954] doi:10.1038/s42003-025-07831-4 [paper, data]

The emergence of moral alignment within human groups is facilitated by interbrain synchrony.

Journal: Communications biology

Status: data only, 1 dataset cited

[18955] doi:10.1038/s42003-025-07926-y [paper]

StainAI: quantitative mapping of stained microglia and insights into brain-wide neuroinflammation and therapeutic effects in cardiac arrest.

Journal: Communications biology

Status: code on request

[18956] doi:10.1073/pnas.2409325122 [paper, repository]

Trans-synaptic modulation of cholinergic circuits tunes opioid reinforcement.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 28555550 (CC-BY-4.0)

Status: code verified

[18957] doi:10.1162/imag_a_00504 [paper, repository]

Individual patterns of functional connectivity in neonates as revealed by surface-based Bayesian modeling.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ecr05/dHCP_template_alignment (MIT), mandymejia/templateICAr (no license), FerradalLab/babyBayes (GPL-3.0)

Status: code verified, 54 files readable, 12 matches

[18958] doi:10.1162/imag_a_00509 [paper, repository]

Analytical pipeline optimisation in developmental fNIRS hyperscanning data: Neural coherence between 4- to 6-year old children collaborating with their mothers.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: vmousley/pc_fNIRS_hyperscanning (no license)

Status: code verified, 16 files readable, 6 matches

[18959] doi:10.1162/netn_a_00430 [paper, repository]

Functional brain networks predicting sustained attention are not specific to perceptual modality.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: monicadrosenberg/Rosenberg_PNAS2020 (GPL-3.0), OSF bt2xy (no license)

Status: code verified, 20 files readable, 10 matches

[18960] doi:10.1162/netn_a_00431 [paper, repository]

Individualized mouse brain network models produce asymmetric patterns of functional connectivity after simulated traumatic injury.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: seas.upenn.edu/~molneuro/software.html (no license)

Status: code verified

[18961] doi:10.1162/netn_a_00437 [paper, repository]

Test-retest reliability of dynamic functional connectivity parameters for a two-state model.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: OSF mu3st (no license)

Status: code verified

[18962] doi:10.1162/netn_a_00438 [paper, repository]

Whole-brain causal discovery using fMRI.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: cdt15/lingam (MIT), syanga/dglearn (MIT), cmu-phil/tetrad (GPL-3.0), xiangyu-sun-789/NTS-NOTEARS (Apache-2.0), nozarilab/2023Arab_CaLLTiF (GPL-3.0)

Status: code verified, 2,193 files readable, 4 matches

[18963] doi:10.1177/13872877251326288 [paper, repository]

Brain and blood transcriptome-wide association studies identify five novel genes associated with Alzheimer's disease.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: daiqile96/OTTERS (no license)

Status: code verified, 16 files readable, 3 matches

[18964] doi:10.1177/1877718x251319697 [paper, repository]

Predicting motor function improvement following deep brain stimulation of the subthalamic nucleus for Parkinson's disease based on STN-T2MRI radiomics.

Journal: Journal of Parkinson's disease

Authors' code: Radiomics/PyRadiomics (BSD-3-Clause), cran.r-project.org/web/packages (no license)

Status: code verified, 60 files readable, 2 matches

[18965] doi:10.1186/s10020-025-01109-5 [paper, repository]

Spatiotemporal diversity in molecular and functional abnormalities in the mdx dystrophic brain.

Journal: Molecular medicine (Cambridge, Mass.)

Authors' code: ippas/portsmouth-darek-mdxbrain (no license)

Status: code verified, 3 files readable

[18966] doi:10.1186/s10194-025-01999-0 [paper, repository]

Uncovering drug targets for cluster headache through proteome-wide Mendelian randomization analysis.

Journal: The journal of headache and pain

Authors' code: WSpiller/RadialMR (GPL-3.0)

Status: code verified, 11 files readable, 2 matches

[18967] doi:10.1186/s12974-025-03413-7 [paper, data]

MAIT cell deficiency exacerbates neuroinflammation in P301S human tau transgenic mice.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[18968] doi:10.1186/s13024-025-00813-4 [paper, data]

A reciprocal relationship between markers of genomic DNA damage and alpha-synuclein pathology in dementia with Lewy bodies.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[18969] doi:10.1523/eneuro.0370-24.2025 [paper, repository]

Postmovement Beta Synchronization Induced by Speed Effects on IHI from the Ipsilateral to Contralateral Motor Cortex.

Journal: eNeuro

Authors' code: Morinooku/code-for-eN-TNWR-0370-24X- (no license)

Status: code verified, 3 files readable

[18970] doi:10.3389/fnagi.2025.1534303 [paper, data]

Association between serum tricosanoic acid and cognitive function in older adults: findings from the NHANES and GEO databases.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[18971] doi:10.3389/fnut.2025.1551313 [paper, data]

Granola consumption with multiple prebiotics in Japanese participants increases <i>Bifidobacterium</i> abundance and improves stress and subjective sleepiness.

Journal: Frontiers in nutrition

Status: data only, 1 dataset cited

[18972] doi:10.7554/elife.93171 [paper, repository]

Mesoscale functional organization and connectivity of color, disparity, and naturalistic texture in human second visual area.

Journal: eLife

Authors' code: herrlich10/mripy (MIT), OSF vbtqs (no license)

Status: code verified, 76 files readable, 10 matches

[18973] doi:10.7554/elife.97658 [paper, repository]

Two long-axis dimensions of hippocampal-cortical integration support memory function across the adult lifespan.

Journal: eLife

Authors' code: kristinnordin/hcgradients (MIT)

Status: code verified, 9 files readable, 3 matches

[18974] doi:10.7759/cureus.80872 [paper, data]

Evaluating the Impact of Attention Mechanisms on a Fine-Tuned Neural Network for Magnetic Resonance Imaging Tumor Classification: A Comparative Analysis.

Journal: Cureus

Status: data only, 1 dataset cited

Wednesday, 19 March 2025 (29 papers)

[18975] doi:10.1016/j.bpsgos.2025.100485 [paper, repository]

Transformative Effects of Mindfulness Meditation Training on the Dynamic Reconfiguration of Executive and Default Mode Networks in Internet Gaming Disorder.

Journal: Biological psychiatry global open science

Authors' code: GenLouvain/GenLouvain (BSD-2-Clause)

Status: code verified, 46 files readable

[18976] doi:10.1016/j.dib.2025.111477 [paper, data]

Cognitive load assessment through EEG: A dataset from arithmetic and Stroop tasks.

Journal: Data in brief

Status: data only, 3 datasets cited

[18977] doi:10.1016/j.neurot.2025.e00571 [paper]

Modulation of ZnT-1 by Let7a unveils a therapeutic potential in amyotrophic lateral sclerosis.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: code on request

[18978] doi:10.1038/s41467-025-57664-2 [paper, repository]

Hypergraph reconstruction from dynamics.

Journal: Nature communications

Authors' code: Zenodo 10530470 (CC-BY-4.0), Zenodo 10530471 (CC-BY-4.0), taylorbasedhypergraphinference/this (GPL-3.0)

Status: code verified, 20 files readable, 2 matches

[18979] doi:10.1038/s41467-025-57867-7 [paper, repository]

Machine learning reveals distinct neuroanatomical signatures of cardiovascular and metabolic diseases in cognitively unimpaired individuals.

Journal: Nature communications

Authors' code: CBICA/NiChart (other), Zenodo 14872922 (CC-BY-4.0), Zenodo 14872923 (CC-BY-4.0), stgovindarajan/spare_cvm_score (other)

Status: code verified, 108 files readable, 2 matches

[18980] doi:10.1038/s41467-025-58007-x [paper, repository]

Molecularly distinct striatonigral neuron subtypes differentially regulate locomotion.

Journal: Nature communications

Authors' code: jdNIH/Kremen1_2025 (no license), Zenodo 14796086 (CC-BY-4.0)

Status: code verified, 9 files readable, 7 matches

[18981] doi:10.1038/s41467-025-58095-9 [paper, data]

A wearable repetitive transcranial magnetic stimulation device.

Journal: Nature communications

Status: data only, 1 dataset cited

[18982] doi:10.1038/s41537-025-00593-2 [paper]

Neurobiology-based cognitive biotypes using multi-scale intrinsic connectivity networks in psychotic disorders.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[18983] doi:10.1038/s41586-025-08757-x [paper, repository]

Spatially resolved mapping of cells associated with human complex traits.

Journal: Nature

Authors' code: JianYang-Lab/gsMap (MIT), Zenodo 14744887 (CC-BY-4.0)

Status: code verified, 71 files readable, 12 matches

[18984] doi:10.1038/s41598-025-86637-0 [paper, data]

Vitamin B12 as an epidrug for regulating peripheral blood biomarkers in long COVID-associated visuoconstructive deficit.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18985] doi:10.1038/s41598-025-90315-6 [paper, data]

EEG detection and recognition model for epilepsy based on dual attention mechanism.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18986] doi:10.1038/s44319-025-00400-0 [paper, data]

Sertm2 is a conserved micropeptide that promotes GDNF-mediated motor neuron subtype specification.

Journal: EMBO reports

Status: data only, 1 dataset cited

[18987] doi:10.1038/s44319-025-00404-w [paper, data]

SERTM2: a neuroactive player in the world of micropeptides.

Journal: EMBO reports

Status: data only, 2 datasets cited

[18988] doi:10.1088/1741-2552/adba8b [paper, repository]

An active electronic, high-density epidural paddle array for chronic spinal cord neuromodulation.

Journal: Journal of neural engineering

Authors' code: Zenodo 14713531 (MIT), neuromotion/the_hd64 (MIT)

Status: code verified, 66 files readable, 5 matches

[18989] doi:10.1088/1741-2552/adbb1f [paper, data]

Parameter-dependent cell-type specific effects of transcranial focused ultrasound stimulation in an awake head-fixed rodent model.

Journal: Journal of neural engineering

Status: data only, 1 dataset cited

[18990] doi:10.1126/sciadv.adq2629 [paper, repository]

Calcium-activated ion channels drive atypical inhibition in medial habenula neurons.

Journal: Science advances

Authors' code: superdongping/MHb_nicotine (no license)

Status: code verified, 3 files readable, 2 matches

[18991] doi:10.1128/mra.01308-24 [paper, data]

Transcriptome of brain-like endothelial cells following coxsackievirus B3 infection.

Journal: Microbiology resource announcements

Status: data only, 2 datasets cited

[18992] doi:10.1136/bmj-2024-082750 [paper, data]

Sonolysis during carotid endarterectomy: randomised controlled trial.

Journal: BMJ (Clinical research ed.)

Status: data only, 1 dataset cited

[18993] doi:10.1186/s12879-025-10814-9 [paper, data]

Brain abscess due to clostridium celerecrescens: first report and literature review.

Journal: BMC infectious diseases

Status: data only, 1 dataset cited

[18994] doi:10.1186/s12883-025-04133-4 [paper, data]

Asymmetrical glymphatic dysfunction in patients with long Covid associated neurocognitive impairment- correlation with BBB disruption.

Journal: BMC neurology

Status: data only, 2 datasets cited

[18995] doi:10.1186/s41747-025-00570-5 [paper, repository]

Connectivity related to major brain functions in Alzheimer disease progression: microstructural properties of the cingulum bundle and its subdivision using diffusion-weighted MRI.

Journal: European radiology experimental

Authors' code: MattRicchi/Cingulum_Bundle_tractography (no license)

Status: code verified, 29 files readable, 2 matches

[18996] doi:10.1371/journal.pone.0309574 [paper, repository]

Assessing white matter plasticity in a randomized controlled trial of early literacy training in preschoolers.

Journal: PloS one

Authors' code: SendyCaffarra/PREK-analysis (no license)

Status: code verified, 3 files readable, 2 matches

[18997] doi:10.1371/journal.pone.0314795 [paper, repository]

Parsing social context in auditory forebrain of male zebra finches.

Journal: PloS one

Authors' code: healeylab/ephysSuite (no license), healeylab/KS-Analysis (no license), healeylab/Pollaketal2024 (no license)

Status: code verified, 68 files readable, 3 matches

[18998] doi:10.1523/eneuro.0361-24.2025 [paper, data]

Macro- and Microstructural Alterations in the Midbrain in Early Psychosis Associates with Clinical Symptom Scores.

Journal: eNeuro

Status: data only, 2 datasets cited

[18999] doi:10.1523/eneuro.0494-22.2025 [paper, repository]

Desynchronization Increased in the Synchronized State: Subsets of Neocortical Neurons Become Strongly Anticorrelated during NonREM Sleep.

Journal: eNeuro

Authors' code: buzsakilab/buzcode (GPL-3.0), BrendonWatsonLab/DCE (no license)

Status: code verified, 2,004 files readable, 5 matches

[19000] doi:10.1523/jneurosci.1814-24.2025 [paper, repository]

Disentangling the Component Processes in Complex Planning Impairments Following Ventromedial Prefrontal Lesions.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF 4xm86 (no license), basvanopheusden/fourinarow (no license)

Status: code verified, 68 files readable, 5 matches

[19001] doi:10.3390/diagnostics15060773 [paper, repository]

A Comparative Study of Machine Learning and Deep Learning Models for Automatic Parkinson's Disease Detection from Electroencephalogram Signals.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: Sankhadip-007/Detecttion-of-Parkinson-s-Disease-using-machine-learning-and-deep-learning (no license)

Status: code verified, 14 files readable, 7 matches

[19002] doi:10.3390/ph18030431 [paper, data]

Identification of Deregulated miRNAs and mRNAs Involved in Tumorigenesis and Detection of Glioblastoma Patients Applying Next-Generation RNA Sequencing.

Journal: Pharmaceuticals (Basel, Switzerland)

Status: data only, 1 dataset cited

[19003] doi:10.7554/elife.101965 [paper, data]

Integration of sensory and fear memories in the rat medial temporal lobe.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 18 March 2025 (36 papers)

[19004] doi:10.1002/mco2.70140 [paper, data]

Mitigating Early Phosphatidylserine Exposure in a Tmem30a-Dependent Way Ameliorates Neuronal Damages After Ischemic Stroke.

Journal: MedComm

Status: data only, 1 dataset cited

[19005] doi:10.1007/s10827-025-00894-6 [paper, repository]

A generalized mathematical framework for the calcium control hypothesis describes weight-dependent synaptic plasticity.

Journal: Journal of computational neuroscience

Authors' code: tmoldwin/FPLR (no license)

Status: code verified, 29 files readable, 6 matches

[19006] doi:10.1007/s12021-025-09721-w [paper, repository]

Efficient, Automatic, and Reproducible Patch Clamp Data Analysis with "Auto ANT", a User-Friendly Interface for Batch Analysis of Patch Clamp Recordings.

Journal: Neuroinformatics

Authors' code: Auto-ANT/Auto-ANT (no license)

Status: code verified, 15 files readable, 10 matches

[19007] doi:10.1016/j.cub.2025.02.034 [paper, repository]

Nonlinear high-activity neuronal excitation enhances odor discrimination.

Journal: Current biology : CB

Authors' code: Zenodo 14697474 (no license), connectome-neuprint/neuprint-python (BSD-3-Clause)

Status: code verified, 38 files readable

[19008] doi:10.1016/j.dcn.2025.101553 [paper, repository]

Intersubject neural similarity reveals the development trajectory of recognition memory in children.

Journal: Developmental cognitive neuroscience

Authors' code: OSF ghbpj (no license)

Status: code verified, 5 files readable

[19009] doi:10.1016/j.nicl.2025.103769 [paper, repository]

Increased glymphatic system activity and thalamic vulnerability in drug-naive somatic depression: Evidenced by DTI-ALPS index.

Journal: NeuroImage. Clinical

Authors' code: Winniework/Spectrum-of-DTI-ALPS (GPL-3.0), Winniework/Automated-DTI-ALPS-pipeline (GPL-3.0)

Status: code verified, 8 files readable, 2 matches

[19010] doi:10.1016/j.omtm.2025.101452 [paper, data]

The RNA content of extracellular vesicles from gene-edited <i>PRPF31</i> <sup>+/-</sup> hiPSC-RPE show potential as biomarkers of retinal degeneration.

Journal: Molecular therapy. Methods & clinical development

Status: data only, 1 dataset cited

[19011] doi:10.1021/acschemneuro.4c00777 [paper, data]

The Neurochemical Signature of Cardiac Arrest: A Multianalyte Online Microdialysis Study.

Journal: ACS chemical neuroscience

Status: data only, 3 datasets cited

[19012] doi:10.1021/acsomega.4c11449 [paper, repository]

pNPs-CapsNet: Predicting Neuropeptides Using Protein Language Models and FastText Encoding-Based Weighted Multi-View Feature Integration with Deep Capsule Neural Network.

Journal: ACS omega

Authors' code: shahidawkum/pNPs-CapsNet (no license)

Status: dead link

[19013] doi:10.1038/s41380-025-02955-9 [paper, data]

Recapitulation and reversal of neuropsychiatric phenotypes in a mouse model of human endogenous retrovirus type W expression.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[19014] doi:10.1038/s41467-025-57602-2 [paper, repository]

Unraveling the neurophysiological correlates of phase-specific enhancement of motor memory consolidation via slow-wave closed-loop targeted memory reactivation.

Journal: Nature communications

Authors' code: judithnicolas/Closed-Loop-Sleep-Motor-Memory (no license)

Status: code verified, 45 files readable, 17 matches

[19015] doi:10.1038/s41467-025-57882-8 [paper, repository]

Perturbing human V1 degrades the fidelity of visual working memory.

Journal: Nature communications

Authors' code: clayspacelab/EEG_TMS_triggers (Apache-2.0), clayspacelab/iEye (no license), clayspacelab/Dake_Curtis_TMSV1_2025 (Apache-2.0)

Status: code verified, 152 files readable, 5 matches

[19016] doi:10.1038/s41467-025-58011-1 [paper, repository]

Mediodorsal thalamus regulates task uncertainty to enable cognitive flexibility.

Journal: Nature communications

Authors' code: mattgolub/fixed-point-finder (Apache-2.0), Xh-Zhang1/pfc-md (no license), Zenodo 14602872 (CC-BY-4.0)

Status: code verified, 63 files readable, 3 matches

[19017] doi:10.1038/s41588-025-02120-6 [paper, repository]

Quantitative characterization of cell niches in spatially resolved omics data.

Journal: Nature genetics

Authors' code: Lotfollahi-lab/nichecompass-reproducibility (BSD-3-Clause), zhengrongbin/MEBOCOST (BSD-3-Clause), Lotfollahi-lab/nichecompass (BSD-3-Clause), nichecompass.readthedocs.io (no license), Zenodo 14621258 (BSD-3-Clause), Zenodo 14632687 (BSD-3-Clause)

Status: code verified, 206 files readable, 40 matches

[19018] doi:10.1073/pnas.2420228122 [paper, repository]

Connectional axis of individual functional variability: Patterns, structural correlates, and relevance for development and cognition.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: CuiLabCIBR/Connectional_Variability_Axis (no license)

Status: code verified, 90 files readable, 11 matches

[19019] doi:10.1101/gr.278931.124 [paper, repository]

The role of transposon activity in shaping <i>cis</i>-regulatory element evolution after whole-genome duplication.

Journal: Genome research

Authors' code: sandve-lab/TE-CRE (no license), Zenodo 13907938 (CC-BY-4.0)

Status: code verified, 71 files readable, 19 matches

[19020] doi:10.1101/gr.279498.124 [paper, repository]

Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection.

Journal: Genome research

Authors' code: Zenodo 11000269 (CC-BY-4.0)

Status: code verified

[19021] doi:10.1111/nyas.15315 [paper, data]

Cortical and behavioral tracking of rhythm in music: Effects of pitch predictability, enjoyment, and expertise.

Journal: Annals of the New York Academy of Sciences

Status: data only, 1 dataset cited

[19022] doi:10.1136/bmjopen-2025-100276 [paper, repository]

Health and education outcomes from adolescence to adulthood for young people with neurodisability and their peers: protocol for a population-based cohort study using linked hospital and education data from England.

Journal: BMJ open

Authors' code: UCL-ECHILD (no license)

Status: code verified

[19023] doi:10.1159/000545129 [paper, data]

Neurotrophic Effects of GH and GnRH in a Full Sciatic Nerve Transection Model in Male Rats.

Journal: Neuroendocrinology

Status: data only, 1 dataset cited

[19024] doi:10.1162/imag_a_00506 [paper, repository]

Velocity-selective arterial spin labelling bolus duration measurements: Implications for consensus recommendations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 13755864 (CC-BY-4.0), inoma001/ft_vsiasl_bolus_fitting (no license)

Status: code verified, 4 files readable, 2 matches

[19025] doi:10.1172/jci.insight.189362 [paper, data]

The brain-body circuit mediates acute stress-induced antiinflammatory reflex in bacterial cystitis by suppressing ILC2 activation.

Journal: JCI insight

Status: data only, 1 dataset cited

[19026] doi:10.1177/13872877251327754 [paper, repository]

EEG biomarkers for Alzheimer's disease: A novel automated pipeline for detecting and monitoring disease progression.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: Cove-Neurosciences-Inc/JAD-paper-analysis-code (no license)

Status: code verified, 2 files readable, 2 matches

[19027] doi:10.1186/s12993-025-00271-4 [paper, data]

Improving effects of melatonin on memory and synaptic potentiation in a mouse model of Alzheimer's-like disease: the involvement of glutamate homeostasis and mGluRs receptors.

Journal: Behavioral and brain functions : BBF

Status: data only, 1 dataset cited

[19028] doi:10.1186/s13020-025-01079-0 [paper, data]

Shengui Sansheng San alleviates the worsening of blood-brain barrier integrity resulted from delayed tPA administration through VIP/VIPR1 pathway.

Journal: Chinese medicine

Status: data only, 1 dataset cited

[19029] doi:10.1186/s13041-025-01191-0 [paper, data]

The psychedelic psilocybin and light exposure have similar and synergistic effects on gene expression patterns in the visual cortex.

Journal: Molecular brain

Status: data only, 2 datasets cited

[19030] doi:10.1371/journal.pone.0311714 [paper, repository]

Neural correlates of the uncanny valley effect for robots and hyper-realistic masks.

Journal: PloS one

Authors' code: OSF 5nz2h (no license)

Status: code verified, 5 files readable, 9 matches

[19031] doi:10.1371/journal.pone.0313733 [paper, repository]

Potential multiple disease progression pathways in female patients with Alzheimer's disease inferred from transcriptome and epigenome data of the dorsolateral prefrontal cortex.

Journal: PloS one

Authors' code: OpenGene/fastp (MIT), samtools/bcftools (MIT)

Status: code verified, 225 files readable

[19032] doi:10.1371/journal.pone.0319898 [paper, data]

RETRACTED: Fischer's ratio and DNA damage in hypoxemia-induced brain injury in rat model: prophylactic role of quercetin and mexamine supplementation.

Journal: PloS one

Status: data only, 1 dataset cited

[19033] doi:10.32598/bcn.2023.5705.1 [paper, data]

Differential Complexity of Information Processing During Motor Imagination in Adults Versus Children.

Journal: Basic and clinical neuroscience

Status: data only, 1 dataset cited

[19034] doi:10.3758/s13415-025-01279-z [paper, repository]

Infraslow Closed-Loop Brain Training for Anxiety and Depression (ISAD): A pilot randomised, sham-controlled trial in adult females with internalizing disorders.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: tysonperez/PhD_rct (no license)

Status: code verified, 2,000 files readable, 5 matches

[19035] doi:10.3758/s13415-025-01286-0 [paper]

Social reward responsiveness as a moderator of the association between perceived bonding with infants and depressive symptoms in postpartum women.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request

[19036] doi:10.7554/elife.100830 [paper, repository]

Enhanced neural speech tracking through noise indicates stochastic resonance in humans.

Journal: eLife

Authors' code: OSF zs9u5 (no license)

Status: code verified, 25 files readable, 5 matches

[19037] doi:10.7554/elife.92618 [paper, repository]

Spatial transcriptomics in the adult <i>Drosophila</i> brain and body.

Journal: eLife

Authors' code: ethz-asl/libpointmatcher (BSD-3-Clause), aertslab/spatial_fly_website (no license)

Status: code verified, 725 files readable, 2 matches

[19038] doi:10.7554/elife.93754 [paper, data]

Pain persists in mice lacking both Substance P and CGRPα signaling.

Journal: eLife

Status: data only, 1 dataset cited

[19039] doi:10.7554/elife.96892 [paper, repository]

Untargeted pixel-by-pixel metabolite ratio imaging as a novel tool for biomedical discovery in mass spectrometry imaging.

Journal: eLife

Authors' code: qic2005/Untargeted-mass-spectrometry-ratio-imaging (MIT)

Status: code verified, 5 files readable, 3 matches

Monday, 17 March 2025 (38 papers, 1 on this page)

[19040] doi:10.1002/advs.202413795 [paper, repository]

Neural Patterns of Social Pain in the Brain-Wide Representations Across Social Contexts.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: kabush/kablab (MIT), canlab/MediationToolbox (no license), zhaolab205/Exclusion_Separation (no license)

Status: code verified, 255 files readable, 6 matches

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