Every paper, by date: page 84

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 84 of 200: 1 April 2025 to 26 March 2025.

Tuesday, 1 April 2025 (111 papers, 67 on this page)

[18593] doi:10.1038/s41598-025-88203-0 [paper, data]

Coactivation patterns reveal the abnormality of dynamic state transitions between different psychiatric disorders.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18594] doi:10.1038/s41598-025-91153-2 [paper, data]

Genetic editing of primary human dorsal root ganglion neurons using CRISPR-Cas9.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18595] doi:10.1038/s41598-025-95355-6 [paper, repository]

Theoretical analysis of low power optogenetic control of synaptic plasticity with subcellular expression of CapChR2 at postsynaptic spine.

Journal: Scientific reports

Authors' code: Zenodo 15011170 (CC-BY-4.0)

Status: code verified, 6 files readable, 6 matches

[18596] doi:10.1038/s41598-025-95361-8 [paper, data]

Grouped multi-scale vision transformer for medical image segmentation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18597] doi:10.1038/s42003-025-07964-6 [paper, repository]

Time-dependent consolidation mechanisms of durable memory in spaced learning.

Journal: Communications biology

Authors' code: OSF wc3mh (no license)

Status: code verified, 7 files readable, 4 matches

[18598] doi:10.1038/s44318-025-00420-5 [paper]

Meru co-ordinates spindle orientation with cell polarity and cell cycle progression.

Journal: The EMBO journal

Status: data only

[18599] doi:10.1038/s44320-025-00096-3 [paper]

Multi-epitope immunocapture of huntingtin reveals striatum-selective molecular signatures.

Journal: Molecular systems biology

Status: data only

[18600] doi:10.1073/pnas.2410101122 [paper, data]

Reactivation of memory-associated neurons induces downstream suppression of competing neuronal populations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[18601] doi:10.1073/pnas.2411716122 [paper, data]

<i>LMX1B</i> missense-perturbation of regulatory element footprints disrupts serotonergic forebrain axon arborization.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[18602] doi:10.1073/pnas.2412453122 [paper, repository]

The cingulate cortex facilitates auditory perception under challenging listening conditions.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: nyu.box.com/v/anbuhl-et-al-2025 (no license)

Status: dead link

[18603] doi:10.1073/pnas.2426640122 [paper, repository]

Reply to Brown et al.: Significant sex differences in accelerated cortical thinning associated with the COVID-19 lockdowns.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 13227188 (CC-BY-4.0)

Status: code verified, 15 files readable

[18604] doi:10.1093/brain/awae320 [paper, data]

Monoallelic de novo variants in DDX17 cause a neurodevelopmental disorder.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[18605] doi:10.1093/brain/awae321 [paper, repository]

Schizophrenia-associated changes in neuronal subpopulations in the human midbrain.

Journal: Brain : a journal of neurology

Authors' code: linnarsson-lab/adult-human-brain (BSD-2-Clause)

Status: code verified, 97 files readable, 5 matches

[18606] doi:10.1093/brain/awae330 [paper]

CACNA1A haploinsufficiency leads to reduced synaptic function and increased intrinsic excitability.

Journal: Brain : a journal of neurology

Status: code on request

[18607] doi:10.1093/brain/awae365 [paper, data]

Lewy pathology formation in patient-derived GBA1 Parkinson's disease midbrain organoids.

Journal: Brain : a journal of neurology

Status: data only, 3 datasets cited

[18608] doi:10.1093/brain/awaf009 [paper, data]

Visual feature processing in a large stroke cohort: evidence against modular organization.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[18609] doi:10.1093/cercor/bhaf069 [paper, repository]

Cognitive traits shape the brain activity associated with mental rotation.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: cbedetti/Dcm2Bids (GPL-3.0), nadiaBRS/Cognitive-traits-shape-the-brain-activity-associated-with-mental-rotation (no license)

Status: code verified, 33 files readable, 2 matches

[18610] doi:10.1093/cercor/bhaf073 [paper, repository]

Information transfer and recovery for the sense of touch.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: DepartmentofNeurophysiology/Information-transfer-and-recovery-for-sense-of-touch-code-for-figures (CC0-1.0), DepartmentofNeurophysiology/Cortical-representation-of-touch-in-silico (no license)

Status: code verified, 98 files readable, 3 matches

[18611] doi:10.1093/cercor/bhaf076 [paper, repository]

The laminar pattern of proprioceptive activation in human primary motor cortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: lasseknudsen1/7tactivevspassivestudy (no license)

Status: code verified, 24 files readable, 6 matches

[18612] doi:10.1093/g3journal/jkaf012 [paper, data]

A Sox2 enhancer cluster regulates region-specific neural fates from mouse embryonic stem cells.

Journal: G3 (Bethesda, Md.)

Status: data only, 2 datasets cited

[18613] doi:10.1093/genetics/iyaf025 [paper, data]

Neuron-specific repression of alternative splicing by the conserved CELF protein UNC-75 in Caenorhabditis elegans.

Journal: Genetics

Status: data only, 1 dataset cited

[18614] doi:10.1093/hmg/ddae199 [paper, repository]

Human TSC2 mutant cells exhibit aberrations in early neurodevelopment accompanied by changes in the DNA Methylome.

Journal: Human molecular genetics

Authors' code: ihrie-lab/TSC2-DNAme (MIT)

Status: code verified, 5 files readable, 2 matches

[18615] doi:10.1093/molbev/msaf080 [paper, repository]

Evolutionary Process Underlying Receptor Gene Expansion and Cellular Divergence of Olfactory Sensory Neurons in Honeybees.

Journal: Molecular biology and evolution

Authors' code: nieyage/honeybee_ORN (MIT)

Status: code verified, 42 files readable, 21 matches

[18616] doi:10.1093/narmme/ugaf018 [paper, repository]

Decoding transcriptional identity during neuron-astroglia cell fate driven by RAR-specific agonists.

Journal: NAR molecular medicine

Authors' code: SysFate/SysISTD (AGPL-3.0)

Status: code verified, 11 files readable

[18617] doi:10.1093/scan/nsae071 [paper, repository]

A beautiful face is good when we're judged by others, a moral character is better.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF e529z (no license)

Status: code verified, 8 files readable, 1 match

[18618] doi:10.1093/scan/nsaf025 [paper, data]

The heart of social pain: examining resting blood pressure and neural sensitivity to exclusion.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[18619] doi:10.1093/scan/nsaf027 [paper, repository]

Neural dynamics of mental state attribution to social robot faces.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 5bj7x (no license)

Status: empty repository

[18620] doi:10.1093/sleepadvances/zpaf025 [paper, repository]

Probability estimation of narcolepsy type 1 in DTA mice using unlabeled EEG and EMG data.

Journal: Sleep advances : a journal of the Sleep Research Society

Authors' code: laulaurose/usleep-mouse (no license)

Status: code verified, 23 files readable, 5 matches

[18621] doi:10.1096/fj.202500291rr [paper, repository]

Functional 3D Human Neuron-Glioblastoma Model Reveals Cellular Interactions Enabling Drug Safety Assessments.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Authors' code: VVuolanto/Calcium-Imaging (no license)

Status: code verified, 2 files readable, 3 matches

[18622] doi:10.1096/fj.202500403r [paper, data]

The Involvement of CSRP1 in Neuroblastoma Differentiation and Apoptosis Impacting Tumor-Suppressive Therapeutic Responses.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[18623] doi:10.1111/adb.70038 [paper, data]

The Impact of Bullying Victimization on Short Video Addiction in Adolescents: The Role of Emotional Distress and Neural Mechanisms.

Journal: Addiction biology

Status: data only, 1 dataset cited

[18624] doi:10.1111/cns.70298 [paper, repository]

Dynamic and Static Functional Gradient in Temporal Lobe Epilepsy With Hippocampal Sclerosis Versus Healthy Controls.

Journal: CNS neuroscience & therapeutics

Authors' code: OSF fzcwy (no license)

Status: code verified, 1 file readable, 3 matches

[18625] doi:10.1111/cns.70351 [paper]

Ultrasound-Induced Synchronized Neural Activities at 40 Hz and 200 Hz Entrained Corresponded Oscillations and Improve Alzheimer's Disease Memory.

Journal: CNS neuroscience & therapeutics

Status: code on request

[18626] doi:10.1111/cns.70362 [paper, data]

Animal Models of Traumatic Brain Injury and Their Relevance in Clinical Settings.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[18627] doi:10.1111/cns.70365 [paper]

Optimized Mouse Model of Sepsis-Associated Encephalopathy: A Rational Standard Based on Modified SHIRPA Score and Neurobehaviors in Mice.

Journal: CNS neuroscience & therapeutics

Status: code on request

[18628] doi:10.1111/cns.70368 [paper, data]

TRPC4 Mediates Trigeminal Neuropathic Pain via Ca<sup>2+</sup>-ERK/P38-ATF2 Pathway in the Trigeminal Ganglion of Mice.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[18629] doi:10.1111/cns.70370 [paper, data]

Identification of Common Brain Protein and Genetic Loci Between Parkinson's Disease and Lewy Body Dementia.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[18630] doi:10.1111/ejn.70107 [paper, data]

Toward an Automatic Classification of the Different Stages of Sleep: Exploring Patterns of Neural Activity in the Subthalamic Nucleus.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[18631] doi:10.1111/ejn.70108 [paper, repository]

Phase-Amplitude Coupling of NREM Sleep Oscillations Shows Between-Night Stability and is Related to Overnight Memory Gains.

Journal: The European journal of neuroscience

Authors' code: nathanecross/seapipe (MIT)

Status: code verified, 106 files readable, 9 matches

[18632] doi:10.1111/ejn.70109 [paper, repository]

The Neural Oscillatory Basis of Perspective-Taking in Autistic and Non-Autistic Adolescents Using Magnetoencephalography.

Journal: The European journal of neuroscience

Authors' code: neurofractal/ASD_PT_MEG (no license)

Status: dead link

[18633] doi:10.1111/ejn.70114 [paper, repository]

VEGF-E Attenuates Injury After Ischemic Stroke by Promoting Reparative Revascularization.

Journal: The European journal of neuroscience

Authors' code: elalilab/VEGF-E-stroke_ElAli (no license)

Status: empty repository, 1 file readable

[18634] doi:10.1111/psyp.70050 [paper, data]

The Role of the N170 in Linking Stimuli to Feedback-Effects of Stimulus Modality and Feedback Delay.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[18635] doi:10.1111/psyp.70051 [paper, data]

The Interoceptive Brain: Confidence Ratings and Accuracy Scores are Independently and Differently Associated With Task-Related Alpha Power During the Heartbeat Tracking Task.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[18636] doi:10.1113/jp287286 [paper, data]

Neuron-non-neuron electrical coupling networks are involved in chronic stress-induced electrophysiological changes in lateral habenular neurons.

Journal: The Journal of physiology

Status: data only, 1 dataset cited

[18637] doi:10.1117/1.nph.12.2.025010 [paper, repository]

Cortical functional connectivity and topology based on complex network graph theory analysis during acute pain stimuli.

Journal: Neurophotonics

Authors' code: Yijing719/Pain-re-fNIRS (CC0-1.0)

Status: code verified, 10 files readable, 1 match

[18638] doi:10.1117/1.nph.12.2.025012 [paper, repository]

Brain-wide 3D neuron detection and mapping with deep learning.

Journal: Neurophotonics

Authors' code: lens-biophotonics/SomaSegmenter (GPL-3.0), keepersecond/neuronal-soma-segmentation (no license), XZH-James/NeuronMapper (no license)

Status: code verified, 328 files readable, 11 matches

[18639] doi:10.1117/1.nph.12.2.025013 [paper, repository]

Compressive streak microscopy for fast sampling of fluorescent reporters of neural activity.

Journal: Neurophotonics

Authors' code: caichangjia/compressive_streak_microscopy (GPL-2.0)

Status: code verified, 19 files readable, 14 matches

[18640] doi:10.1117/1.nph.12.2.025016 [paper]

Two-photon fiberscope with a proactive optoelectrical commutator for rotational resistance-free imaging in freely behaving rodents.

Journal: Neurophotonics

Status: code on request

[18641] doi:10.1117/1.nph.12.2.025017 [paper]

Optimized laser speckle-based imaging system and methods for deep tissue cerebral blood flow imaging in small rodents.

Journal: Neurophotonics

Status: code on request

[18642] doi:10.1117/1.nph.12.2.025018 [paper]

Wide-field fluorescence navigation system for efficient miniature multiphoton imaging in freely behaving animals.

Journal: Neurophotonics

Status: code on request

[18643] doi:10.1117/1.nph.12.2.026601 [paper, repository]

NINFA: Non-commercial interface for neuro-feedback acquisitions.

Journal: Neurophotonics

Authors' code: PsychoOI/NINFA (no license)

Status: code verified, 113 files readable, 2 matches

[18644] doi:10.1167/iovs.66.4.15 [paper]

CD4+CD25- T-Cell-Secreted IFN-γ Promotes Corneal Nerve Degeneration in Diabetic Mice.

Journal: Investigative ophthalmology & visual science

Status: data only

[18645] doi:10.1167/iovs.66.4.45 [paper, data]

The Influence of Changes in Microglia Development on the Plasticity of the Developing Visual Cortex Circuit in Juvenile Mice.

Journal: Investigative ophthalmology & visual science

Status: data only, 1 dataset cited

[18646] doi:10.1167/jov.25.4.14 [paper, repository]

Violated predictions enhance the representational fidelity of visual features in perception.

Journal: Journal of vision

Authors' code: OSF gj7ut (no license)

Status: code verified, 3 files readable, 2 matches

[18647] doi:10.1167/jov.25.4.17 [paper, data]

Orientation-tuned surround-suppression is strongest within perceived 3D surfaces.

Journal: Journal of vision

Status: data only, 1 dataset cited

[18648] doi:10.1167/jov.25.4.5 [paper, repository]

Optimal visual search with highly heuristic decision rules.

Journal: Journal of vision

Authors' code: anqi-j/supraoptimal-covert-search (MIT)

Status: code verified, 20 files readable

[18649] doi:10.1210/clinem/dgae511 [paper, data]

Adolescent Girls With Type 1 Diabetes Develop Changes in Bone Prior to Evidence of Clinical Neuropathy.

Journal: The Journal of clinical endocrinology and metabolism

Status: data only, 3 datasets cited

[18650] doi:10.1371/journal.pbio.3002710 [paper, repository]

The multiscale brain structural re-organization that occurs from childhood to adolescence correlates with cortical morphology maturation and functional specialization.

Journal: PLoS biology

Authors' code: Zenodo 14874537 (CC-BY-4.0), LSYLAB/Multiscale-structural-gradient-differentiation-from-childhood-to-adolescence (no license), mica-mni/micaopen (GPL-3.0), netneurolab/abagen (BSD-3-Clause), murraylab/brainsmash (GPL-3.0)

Status: code verified, 476 files readable, 16 matches

[18651] doi:10.1371/journal.pone.0319406 [paper, data]

Pupillary responses to bright and dark stimuli in individuals with autism spectrum disorders.

Journal: PloS one

Status: data only, 1 dataset cited

[18652] doi:10.1371/journal.pone.0319418 [paper, repository]

A human iPSC-derived midbrain neural stem cell model of prenatal opioid exposure and withdrawal: A proof of concept study.

Journal: PloS one

Authors' code: eraich26/CellFateQuant (no license)

Status: code verified, 2 files readable

[18653] doi:10.1371/journal.pone.0320376 [paper, data]

Inkjet-printed transparent electrodes: Design, characterization, and initial in vivo evaluation for brain stimulation.

Journal: PloS one

Status: data only, 1 dataset cited

[18654] doi:10.18502/cjn.v24i2.20682 [paper, data]

Identification of diagnostic microRNAs and their target genes in multiple sclerosis based on interactome networks using an in silico approach.

Journal: Current journal of neurology

Status: data only, 1 dataset cited

[18655] doi:10.3389/fnhum.2025.1468947 [paper, data]

Evidence of a hierarchical representation in bodily self-consciousness: the neural correlates of embodiment and presence in virtual worlds.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[18656] doi:10.3390/microorganisms13040807 [paper, data]

Microspatial Heterogeneities and the Absence of Postmortem Contamination in Alzheimer's Disease Brain Microbiota: An Alzheimer's Pathobiome Initiative (AlzPI) Study.

Journal: Microorganisms

Status: data only, 1 dataset cited

[18657] doi:10.47176/mjiri.39.49 [paper, data]

Identification of Prognostic and Diagnostic Biomarkers for Glioma Utilizing Immune System Gene Profiling.

Journal: Medical journal of the Islamic Republic of Iran

Status: data only, 1 dataset cited

[18658] doi:10.7554/elife.104469 [paper, repository]

Peripheral opioid receptor antagonism alleviates fentanyl-induced cardiorespiratory depression and is devoid of aversive behavior.

Journal: eLife

Authors' code: Zenodo 15042135 (Apache-2.0), jessinbotham/ruyle_photometry (Apache-2.0)

Status: code verified, 10 files readable, 1 match

[18659] doi:10.7554/elife.91221 [paper, repository]

Infralimbic parvalbumin neural activity facilitates cued threat avoidance.

Journal: eLife

Authors' code: yi-yun-ho/Infralimbic-parvalbumin-neural-activity-facilitates-cued-threat-avoidance (no license)

Status: code verified, 15 files readable, 6 matches

Monday, 31 March 2025 (31 papers)

[18660] doi:10.1007/s11682-025-00999-7 [paper]

The neurobiology of motivational anhedonia in patients with depression.

Journal: Brain imaging and behavior

Status: code on request

[18661] doi:10.1016/j.patter.2025.101212 [paper, repository]

SECONDGRAM: Self-conditioned diffusion with gradient manipulation for longitudinal MRI imputation.

Journal: Patterns (New York, N.Y.)

Authors' code: btheodorou99/SECONDGRAM (no license), Zenodo 14726354 (CC-BY-4.0)

Status: code verified, 116 files readable, 2 matches

[18662] doi:10.1021/acsomega.4c10849 [paper, data]

Peptide Family Promotes Brain Cell Rejuvenation and Improved Cognition through Peripheral Delivery.

Journal: ACS omega

Status: data only, 1 dataset cited

[18663] doi:10.1038/s41380-025-02974-6 [paper, repository]

Deep graph learning of multimodal brain networks defines treatment-predictive signatures in major depression.

Journal: Molecular psychiatry

Authors' code: YongJiao10/MultimodalGraph4MDD (no license)

Status: code verified, 8 files readable

[18664] doi:10.1038/s41467-025-58254-y [paper, data]

Repair-associated macrophages increase after early-phase microglia attenuation to promote ischemic stroke recovery.

Journal: Nature communications

Status: data only, 2 datasets cited

[18665] doi:10.1038/s41467-025-58336-x [paper, data]

Optogenetic activation of mechanical nociceptions to enhance implant osseointegration.

Journal: Nature communications

Status: data only, 1 dataset cited

[18666] doi:10.1038/s41562-025-02149-x [paper, repository]

A neural geometry approach comprehensively explains apparently conflicting models of visual perceptual learning.

Journal: Nature human behaviour

Authors' code: Yu-AngCheng/neural_geometry_VPL (MIT)

Status: code verified, 64 files readable, 11 matches

[18667] doi:10.1038/s41593-025-01923-4 [paper, repository]

DELTA: a method for brain-wide measurement of synaptic protein turnover reveals localized plasticity during learning.

Journal: Nature neuroscience

Authors' code: boazmohar/Unbiased (BSD-3-Clause)

Status: code verified, 608 files readable, 4 matches

[18668] doi:10.1038/s41597-025-04901-4 [paper, data]

China's social fake news database release with brain structural, functional, and behavioural measures.

Journal: Scientific data

Status: data only, 1 dataset cited

[18669] doi:10.1038/s41598-025-95351-w [paper, repository]

Prediction of acoustic tinnitus suppression using resting-state EEG via explainable AI approach.

Journal: Scientific reports

Authors' code: payamsash/Prime (MIT)

Status: code verified, 4 files readable, 4 matches

[18670] doi:10.1038/s41598-025-95406-y [paper, repository]

Hybrid weighted fuzzy production rule extraction utilizing modified harmony search and BPNN.

Journal: Scientific reports

Authors' code: kaggle.com/uciml/pima-indians-diabetes-database (no license)

Status: dead link

[18671] doi:10.1038/s42003-025-07980-6 [paper, repository]

Nicotinic acetylcholine receptors regulate growth hormone in pituitary somatotrophs of tigers.

Journal: Communications biology

Authors' code: Zenodo 13762242 (no license)

Status: empty repository

[18672] doi:10.1073/pnas.2419178122 [paper, data]

Optogenetic stimulation of the dorsal striatum bidirectionally controls seizures.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[18673] doi:10.1117/1.nph.12.2.025003 [paper, repository]

Obtaining artifact-corrected signals in fiber photometry via isosbestic signals, robust regression, and dF/F calculations.

Journal: Neurophotonics

Authors' code: philjrdb/RegressionSim (no license), OSF z6c5b (no license)

Status: code verified, 15 files readable, 8 matches

[18674] doi:10.1155/np/1456201 [paper, data]

Unveiling Cognitive Interference: fNIRS Insights Into Poststroke Aphasia During Stroop Tasks.

Journal: Neural plasticity

Status: data only, 1 dataset cited

[18675] doi:10.1161/jaha.124.034908 [paper, repository]

Stressor-Evoked Brain Activity, Cardiovascular Reactivity, and Subclinical Atherosclerosis in Midlife Adults.

Journal: Journal of the American Heart Association

Authors' code: CoAxLab/sbp-imt-mediation (MIT)

Status: code verified, 22 files readable, 3 matches

[18676] doi:10.1162/imag_a_00513 [paper, repository]

Statistical inference for same data meta-analysis in neuroimaging multiverse analyzes.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Inria-Empenn/SDMA (MIT), poldrack/narps (MIT)

Status: code verified, 62 files readable, 4 matches

[18677] doi:10.1162/imag_a_00518 [paper, data]

The neural basis of face pareidolia with human intracerebral recordings.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[18678] doi:10.1162/imag_a_00519 [paper, repository]

BOLDsωimsuite: A new software suite for forward modeling of the BOLD fMRI signal.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: NPann/MrVox2D (BSD-3-Clause), jacobchausse/BOLDswimsuite (GPL-3.0)

Status: code verified, 49 files readable, 3 matches

[18679] doi:10.1162/imag_a_00524 [paper, repository]

Revealing the co-existence of written and spoken language coding neural populations in the visual word form area.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ws1011001/VWFA_multimodal_neural_representations (no license)

Status: code verified, 12 files readable, 7 matches

[18680] doi:10.1186/s12967-025-06402-9 [paper, repository]

Construction of enhanced MRI-based radiomics models using machine learning algorithms for non-invasive prediction of IL7R expression in high-grade gliomas and its prognostic value in clinical practice.

Journal: Journal of translational medicine

Authors' code: therneau/survival (no license), topepo/caret (no license)

Status: code verified, 827 files readable, 3 matches

[18681] doi:10.1186/s40658-025-00744-5 [paper]

Generating synthetic brain PET images of synaptic density based on MR T1 images using deep learning.

Journal: EJNMMI physics

Status: code on request

[18682] doi:10.12688/f1000research.161306.2 [paper, data]

Non-native speakers of English or ChatGPT: Who thinks better?

Journal: F1000Research

Status: data only, 1 dataset cited

[18683] doi:10.1371/journal.pbio.3003057 [paper, repository]

Stimulus selection enhances value-modulated somatosensory processing in the superior colliculus.

Journal: PLoS biology

Authors' code: Zenodo 13346093 (CC-BY-4.0), Zenodo 14790606 (MIT), sumachinta/body-position_decoding_model (MIT)

Status: code verified, 24 files readable

[18684] doi:10.1371/journal.pgen.1011583 [paper, repository]

RatXcan: A framework for cross-species integration of genome-wide association and gene expression data.

Journal: PLoS genetics

Authors' code: Zenodo 13996957 (CC-BY-4.0), Zenodo 13997008 (CC-BY-4.0), hakyimlab/rat_genomics_paper_pipeline_2024 (no license)

Status: code verified, 126 files readable, 5 matches

[18685] doi:10.1371/journal.pone.0320004 [paper]

Aerobic exercise and brain structure among military service members and Veterans with varying histories of mild traumatic brain injury: A LIMBIC-CENC exploratory investigation.

Journal: PloS one

Status: code on request

[18686] doi:10.3389/fnagi.2025.1508677 [paper, repository]

Allostatic load, a measure of cumulative physiological stress, impairs brain structure but not <i>β</i>-accumulation in older adults: an exploratory study.

Journal: Frontiers in aging neuroscience

Authors' code: silversantestudy.eu/2020/09 (no license)

Status: code found, still to be checked

[18687] doi:10.3389/fnimg.2025.1479569 [paper, repository]

Evaluation of EEG pre-processing and source localization in ecological research.

Journal: Frontiers in neuroimaging

Authors' code: kdotdot/cerebra_atlas_python (MIT)

Status: code verified, 82 files readable, 3 matches

[18688] doi:10.3390/neurolint17040052 [paper]

Linking Memory Impairment to Structural Connectivity in Extrahippocampal Temporal Lobe Epilepsy Surgery.

Journal: Neurology international

Status: code on request

[18689] doi:10.59249/qtvt7676 [paper, data]

ROCK2 Downregulation in Pediatric Medulloblastoma Increases Migration and Predicts the Involvement of SHH Non-canonical Signaling.

Journal: The Yale journal of biology and medicine

Status: data only, 1 dataset cited

[18690] doi:10.7717/peerj-cs.2787 [paper, repository]

LIU-NET: lightweight Inception U-Net for efficient brain tumor segmentation from multimodal 3D MRI images.

Journal: PeerJ. Computer science

Authors' code: rehanrazaa/LIU-Net-Lightweight_Inception_U-Net_Brain_Tumor_Segmentation_BraTS2021 (MIT)

Status: code verified, 10 files readable, 2 matches

Sunday, 30 March 2025 (9 papers)

[18691] doi:10.1002/smll.202500221 [paper, repository]

Atomic Force Microscopy Reveals Differences In Mechanical Properties Linked To Cortical Structure In Mouse And Human Oocytes.

Journal: Small (Weinheim an der Bergstrasse, Germany)

Authors' code: Zenodo 14999026 (CC-BY-4.0)

Status: code verified, 1 file readable

[18692] doi:10.1007/s10522-025-10220-3 [paper]

Elucidating the role of peripheral monocyte nicotinic acetylcholine receptors and inflammation in cognitive outcomes in older adults.

Journal: Biogerontology

Status: code on request

[18693] doi:10.1016/j.isci.2025.112321 [paper, data]

Sleep deprivation-induced sympathetic activation promotes pro-tumoral macrophage phenotype via the ADRB2/KLF4 pathway to facilitate NSCLC metastasis.

Journal: iScience

Status: data only, 1 dataset cited

[18694] doi:10.1016/j.isci.2025.112323 [paper, data]

Perivascular cerebrospinal fluid inflow matches interstitial fluid efflux in anesthetized rats.

Journal: iScience

Status: code on request, 1 dataset cited

[18695] doi:10.1038/s41398-025-03318-2 [paper, data]

Cognitive impairment following maternal separation in rats mediated by the NAD⁺/SIRT3 axis via modulation of hippocampal synaptic plasticity.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[18696] doi:10.1038/s41467-025-58356-7 [paper, repository]

Quantitative PET imaging and modeling of molecular blood-brain barrier permeability.

Journal: Nature communications

Authors' code: kjch03/bbb-permeability-pet (no license), Zenodo 14954958 (CC-BY-4.0)

Status: code verified, 10 files readable, 2 matches

[18697] doi:10.1038/s41598-025-94806-4 [paper, repository]

Multimodal contrastive learning for enhanced explainability in pediatric brain tumor molecular diagnosis.

Journal: Scientific reports

Authors' code: IMICSLab/Tumor_Location_weighted_MRI_Report_Contrastive_Learning (no license)

Status: code verified, 7 files readable, 10 matches

[18698] doi:10.1111/nmo.70039 [paper, repository]

The Association of Avoidant/Restrictive Food Intake Disorder (ARFID) and Neurogastroenterology Disorders (Including Disorders of Gut-Brain Interaction [DGBI]): A Scoping Review.

Journal: Neurogastroenterology and motility

Authors' code: figshare 2 (no license)

Status: dead link

[18699] doi:10.3390/microorganisms13040789 [paper, data]

Gut Microbiome-Brain Crosstalk in the Early Life of Chicken Reveals the Circadian Regulation of Key Metabolic and Immune Signaling Processes.

Journal: Microorganisms

Status: data only, 1 dataset cited

Saturday, 29 March 2025 (13 papers)

[18700] doi:10.1016/j.ebiom.2025.105679 [paper, repository]

Foetal cortical expansion is associated with neurodevelopmental outcome at 2-years in congenital heart disease: a longitudinal follow-up study.

Journal: EBioMedicine

Authors' code: FNNDSC/fetal-brain-segmentation (MIT), jwhong1125/fetal_CP_segmentation (GPL-3.0), FNNDSC/foetal-brain-segmentation (no license), jwhong1125/foetal_CP_segmentation (no license), FNNDSC (no license)

Status: code verified, 87 files readable

[18701] doi:10.1016/j.ynirp.2025.100258 [paper, repository]

Non-invasive brain stimulation reorganises effective connectivity during a working memory task in individuals with Neurofibromatosis Type 1.

Journal: Neuroimage. Reports

Authors' code: biu.bangor.ac.uk/projects.php.en (no license), MCLit/NF1-DCM-WM (no license)

Status: code verified, 5 files readable, 2 matches

[18702] doi:10.1038/s41467-025-58228-0 [paper, repository]

Ultrafast fMRI reveals serial queuing of information processing during multitasking in the human brain.

Journal: Nature communications

Authors' code: s3.accre.vu/maroislabbucket/maroisnatcomms (no license)

Status: code found, still to be checked

[18703] doi:10.1038/s41467-025-58382-5 [paper]

Dopamine prediction error signaling in a unique nigrostriatal circuit is critical for associative fear learning.

Journal: Nature communications

Status: code on request

[18704] doi:10.1038/s41597-025-04863-7 [paper, repository]

Multimodal precision MRI of the individual human brain at ultra-high fields.

Journal: Scientific data

Authors' code: micapipe.readthedocs.io (no license), MICA-MNI/micapipe (GPL-3.0)

Status: code verified, 13 files readable

[18705] doi:10.1038/s41598-024-83941-z [paper, data]

Evaluating the combined effects of mobile computerized CBT and post-learning oscillatory modulation on self-esteem: a randomized controlled trial.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18706] doi:10.1038/s41598-025-86294-3 [paper, repository]

Flexible Patched Brain Transformer model for EEG decoding.

Journal: Scientific reports

Authors' code: timonkl/PatchedBrainTransformer (MIT)

Status: code verified, 8 files readable, 7 matches

[18707] doi:10.1038/s41598-025-91177-8 [paper, repository]

Lateral frontopolar theta-band activity supports flexible switching between emotion regulation strategies.

Journal: Scientific reports

Authors' code: data.ru.nl (no license)

Status: code verified

[18708] doi:10.1038/s41598-025-95190-9 [paper, repository]

A group based network analysis for Alzheimer's disease fMRI data.

Journal: Scientific reports

Authors' code: nohidenname/SNBG (no license)

Status: code verified, 7 files readable

[18709] doi:10.1038/s41598-025-95806-0 [paper, data]

Development and evaluation of S-carboxymethyl-L-cystine-loaded solid lipid nanoparticles for Parkinson's disease in murine and zebrafish models.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18710] doi:10.1117/1.jbo.30.4.046002 [paper]

Deep structural brain imaging via computational three-photon microscopy.

Journal: Journal of biomedical optics

Status: code on request

[18711] doi:10.3390/bioengineering12040355 [paper, data]

Automated Detection of Aberrant Episodes in Epileptic Conditions: Leveraging EEG and Machine Learning Algorithms.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[18712] doi:10.3390/jimaging11040103 [paper]

Riemannian Manifolds for Biological Imaging Applications Based on Unsupervised Learning.

Journal: Journal of imaging

Status: code on request

Friday, 28 March 2025 (31 papers)

[18713] doi:10.1002/mds.30178 [paper, data]

Neurodegenerative and Neurodevelopmental Roles for Bulk Lipid Transporters VPS13A and BLTP2.

Journal: Movement disorders : official journal of the Movement Disorder Society

Status: data only, 1 dataset cited

[18714] doi:10.1007/s10548-025-01113-2 [paper, repository]

Stimulation Parameters Recruit Distinct Cortico-Cortical Pathways: Insights from Microstate Analysis on TMS-Evoked Potentials.

Journal: Brain topography

Authors' code: gin.g-node.org/giacomo_guidali/guidali_et_al_2023_ejn_rr (no license)

Status: code verified

[18715] doi:10.1016/j.csbj.2025.03.043 [paper, repository]

iNClassSec-ESM: Discovering potential non-classical secreted proteins through a novel protein language model.

Journal: Computational and structural biotechnology journal

Authors' code: AmamiyaHoshie/iNClassSec-ESM (no license), AmamiyaHoshie/iNClassSec-ESM-Prediction-Tool (no license)

Status: code verified, 34 files readable, 8 matches

[18716] doi:10.1016/j.xpro.2025.103715 [paper]

Protocol for producing brain-derived neurotrophic factor and neurotrophin-4 in their pro and active form in Escherichia coli.

Journal: STAR protocols

Status: code on request

[18717] doi:10.1038/s41398-025-03319-1 [paper, repository]

Regulation of craving and underlying resting-state neural circuitry predict hazard of smoking lapse.

Journal: Translational psychiatry

Authors' code: web.conn-toolbox.org (no license)

Status: code verified

[18718] doi:10.1038/s41418-025-01488-6 [paper, data]

The transcription factor LHX2 mediates and enhances oncogenic BMP signaling in medulloblastoma.

Journal: Cell death and differentiation

Status: data only, 1 dataset cited

[18719] doi:10.1038/s41467-025-58070-4 [paper, repository]

A functional screen uncovers circular RNAs regulating excitatory synaptogenesis in hippocampal neurons.

Journal: Nature communications

Authors' code: dieterich-lab/DCC (GPL-3.0), dieterich-lab/CircTest (no license), dcolam/Cluster-Analysis-Plugin (MIT), Zenodo 8167635 (other-open)

Status: code verified, 60 files readable, 1 match

[18720] doi:10.1038/s41467-025-58311-6 [paper, repository]

Uncertainty estimation with prediction-error circuits.

Journal: Nature communications

Authors' code: lhertaeg/weighted_sensory_prediction (GPL-3.0), Zenodo 14869367 (GPL-3.0)

Status: code verified, 44 files readable, 1 match

[18721] doi:10.1038/s41598-025-94076-0 [paper, data]

A novel method for estimating functional connectivity from EEG coherence potentials.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18722] doi:10.1038/s41598-025-95510-z [paper, repository]

Comparative analysis of dehazing algorithms on real-world hazy images.

Journal: Scientific reports

Authors' code: zhengchaobing/Multi-scale-Single-Image-Dehazing-Using-Laplacian-and-Gaussian-Pyramids (no license)

Status: code verified, 20 files readable, 2 matches

[18723] doi:10.1038/s41598-025-95568-9 [paper, repository]

Saccades influence functional modularity in the human cortical vision network.

Journal: Scientific reports

Authors' code: ahghaderi/amir-hossein-ghaderi (BSD-3-Clause)

Status: code verified, 7 files readable

[18724] doi:10.1038/s42003-025-07913-3 [paper, repository]

Neural dynamics of semantic control underlying generative storytelling.

Journal: Communications biology

Authors' code: jvparidon/subs2vec (MIT), huggingface.co/dbmdz/bert-base-italian-xxl-uncased (MIT), huggingface.co/indigo-ai/bertino (MIT)

Status: code verified, 27 files readable, 2 matches

[18725] doi:10.1038/s42003-025-07936-w [paper, repository]

Diffusion MRI GAN synthesizing fibre orientation distribution data using generative adversarial networks.

Journal: Communications biology

Authors' code: CUB-IGL/alpha-WGAN-for-FODs (no license), Zenodo 13902256 (CC-BY-4.0)

Status: code verified, 4 files readable

[18726] doi:10.1126/sciadv.adp8271 [paper, data]

Perturbed cell fate decision by schizophrenia-associated AS3MT<sup>d2d3</sup> isoform during corticogenesis.

Journal: Science advances

Status: data only, 1 dataset cited

[18727] doi:10.1126/science.adt0773 [paper, repository]

Hedonic eating is controlled by dopamine neurons that oppose GLP-1R satiety.

Journal: Science (New York, N.Y.)

Authors' code: neugun/periLC-VTA (no license), Zenodo 14680708 (CC-BY-4.0)

Status: code verified, 16 files readable, 3 matches

[18728] doi:10.1136/bmjment-2024-301451 [paper, repository]

Crosswalk between HRSD and MADRS outcomes for rTMS in patients with depression.

Journal: BMJ mental health

Authors' code: xiaochenphd/scale_crosswalk_beta (GPL-3.0)

Status: code verified, 10 files readable, 2 matches

[18729] doi:10.1159/000545417 [paper, data]

Cellular Scaling Rules for Brains of the Galliform Birds (Aves, Galliformes) Compared to Those of Songbirds and Parrots: Distantly Related Avian Lineages Have Starkly Different Neuronal Cerebrotypes.

Journal: Brain, behavior and evolution

Status: data only, 1 dataset cited

[18730] doi:10.1186/s12864-025-11492-2 [paper, data]

Metabolomics and transcriptomics analyses reveal the complex molecular mechanisms by which the hypothalamus regulates sexual development in female goats.

Journal: BMC genomics

Status: data only, 1 dataset cited

[18731] doi:10.1186/s13041-025-01199-6 [paper, data]

Klotho overexpression protects human cortical neurons from β-amyloid induced neuronal toxicity.

Journal: Molecular brain

Status: data only, 1 dataset cited

[18732] doi:10.1371/journal.pcbi.1012857 [paper, repository]

An integrative network approach for longitudinal stratification in Parkinson's disease.

Journal: PLoS computational biology

Authors' code: biomedicalinformaticsgroup/MOGDx-PPMI (no license)

Status: code verified, 12 files readable, 5 matches

[18733] doi:10.1523/eneuro.0101-25.2025 [paper, data]

Erratum: "Comprehensive Characterization of a Subfamily of Ca<sup>2+</sup>-Binding Proteins in Mouse and Human Retinal Neurons at Single-Cell Resolution".

Journal: eNeuro

Status: data only, 1 dataset cited

[18734] doi:10.1523/eneuro.0555-24.2024 [paper, repository]

Neuronal Network Inactivity Potentiates Neuropeptide Release from Mouse Cortical Neurons.

Journal: eNeuro

Authors' code: alemoro (no license)

Status: code verified

[18735] doi:10.3390/biom15040495 [paper, data]

Functional Analysis of Direct In Vitro Effect of Phosphorylated Tau on Mitochondrial Respiration and Hydrogen Peroxide Production.

Journal: Biomolecules

Status: data only, 1 dataset cited

[18736] doi:10.3390/e27040357 [paper, data]

InfoMat: Leveraging Information Theory to Visualize and Understand Sequential Data.

Journal: Entropy (Basel, Switzerland)

Status: data only, 2 datasets cited

[18737] doi:10.3390/ijms26073135 [paper, data]

Exploring Male-Specific Synaptic Plasticity in Major Depressive Disorder: A Single-Nucleus Transcriptomic Analysis Using Bioinformatics Methods.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[18738] doi:10.3390/jcm14072315 [paper, repository]

Additional Effects of Facilitatory Cerebellar Repetitive Transcranial Magnetic Stimulation on Inhibitory Repetitive Transcranial Magnetic Stimulation over the Unaffected Contralesional Primary Motor Cortex for Motor Recovery in Subacute Ischemic Stroke Patients.

Journal: Journal of clinical medicine

Authors' code: rordenlab/dcm2niix (BSD-2-Clause)

Status: code verified, 75 files readable, 1 match

[18739] doi:10.3390/s25072134 [paper]

A Frequency-Shifting Variational Mode Decomposition-Based Approach to MI-EEG Signal Classification for BCIs.

Journal: Sensors (Basel, Switzerland)

Status: code on request

[18740] doi:10.3390/s25072141 [paper, data]

On-the-Fly Sleep Scoring Algorithm with Heart Rate, RR Intervals and Accelerometer as Input.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[18741] doi:10.7554/elife.100478 [paper, repository]

Layer 6 corticocortical neurons are a major route for intra- and interhemispheric feedback.

Journal: eLife

Authors' code: simonweiler/layer6_anatomy (no license)

Status: code verified, 2 files readable, 1 match

[18742] doi:10.7554/elife.100527 [paper, data]

A peptide-neurotensin conjugate that crosses the blood-brain barrier induces pharmacological hypothermia associated with anticonvulsant, neuroprotective, and anti-inflammatory properties following status epilepticus in mice.

Journal: eLife

Status: data only, 4 datasets cited

[18743] doi:10.7554/elife.101103 [paper, data]

3D reconstruction of neuronal allometry and neuromuscular projections in asexual planarians using expansion tiling light sheet microscopy.

Journal: eLife

Status: data only, 2 datasets cited

Thursday, 27 March 2025 (35 papers)

[18744] doi:10.1002/ana.27223 [paper]

Dopamine Transporter Imaging as Objective Monitoring Biomarker in Parkinson's Disease.

Journal: Annals of neurology

Status: code on request

[18745] doi:10.1016/j.celrep.2025.115482 [paper]

Septo-hypothalamic regulation of binge-like alcohol consumption by the nociceptin system.

Journal: Cell reports

Status: code on request

[18746] doi:10.1016/j.ebiom.2025.105659 [paper, repository]

Exploring the neuromagnetic signatures of cognitive decline from mild cognitive impairment to Alzheimer's disease dementia.

Journal: EBioMedicine

Authors' code: singaub/meg-biofind-ad-progression-paper-code (BSD-2-Clause)

Status: code verified, 34 files readable, 9 matches

[18747] doi:10.1016/j.isci.2025.112295 [paper, data]

Fate plasticity of interneuron specification.

Journal: iScience

Status: data only, 1 dataset cited

[18748] doi:10.1016/j.isci.2025.112313 [paper, data]

Auditory evoked delta brushes involve stimulus-specific cortical networks in preterm infants.

Journal: iScience

Status: code on request, 1 dataset cited

[18749] doi:10.1016/j.neuron.2025.03.006 [paper]

Vascular motion in the dorsal root ganglion sensed by Piezo2 in sensory neurons triggers episodic pain.

Journal: Neuron

Status: code on request

[18750] doi:10.1016/j.stemcr.2025.102470 [paper]

Human cone photoreceptor transplantation stimulates remodeling and restores function in AIPL1 model of end-stage Leber congenital amaurosis.

Journal: Stem cell reports

Status: code on request

[18751] doi:10.1016/j.xcrm.2025.102044 [paper]

Common and specific effects in brain oscillations and motor symptoms of tDCS and tACS in Parkinson's disease.

Journal: Cell reports. Medicine

Status: code on request

[18752] doi:10.1016/j.xpro.2025.103716 [paper, repository]

Protocol for spatial metabolomics and isotope tracing in the mouse brain.

Journal: STAR protocols

Authors' code: Neurometabolomics/Protocol_Spatial_Neurometabolomics (no license)

Status: code verified, 6 files readable, 3 matches

[18753] doi:10.1017/s0033291725000479 [paper, repository]

Cortical morphometric similarity gradient in schizophrenia and its association with transcriptional profiles and clinical phenotype.

Journal: Psychological medicine

Authors' code: SarahMorgan/Morphometric_Similarity_SZ (MIT), MICA-MNI/BrainSpace (BSD-3-Clause), rmarkello/abagen (BSD-3-Clause), frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 193 files readable, 6 matches

[18754] doi:10.1038/s41398-025-03297-4 [paper, repository]

Dietary inflammatory index and brain disorders: a Large Prospective Cohort study.

Journal: Translational psychiatry

Authors' code: yanfu-a/Diet_inflammation (no license)

Status: code verified, 2 files readable

[18755] doi:10.1038/s41419-025-07543-x [paper, repository]

Single-cell analysis reveals that GFAP⁺ dedifferentiated Schwann cells promote tumor progress in PNI-positive distal cholangiocarcinoma via lactate/HMGB1 axis.

Journal: Cell death & disease

Authors' code: scidb.cn (no license)

Status: code verified

[18756] doi:10.1038/s41597-025-04743-0 [paper, repository]

A labeled Clinical-MRI dataset of Nigerian brains.

Journal: Scientific data

Authors' code: brainlife/cli (MIT), brainlife/ezbids (MIT), bacaron/nigerian_brain_analyses (MIT)

Status: code verified, 114 files readable, 1 match

[18757] doi:10.1038/s41597-025-04886-0 [paper, repository]

Human head models and populational framework for simulating brain stimulations.

Journal: Scientific data

Authors' code: Zenodo 13259679 (CC-BY-4.0), Zenodo 23406358 (MIT), Zenodo 23406359 (MIT), vcubiomag/cunibs (GPL-3.0)

Status: code verified, 132 files readable

[18758] doi:10.1038/s41598-025-94534-9 [paper, data]

Effects of whole brain proton irradiation at conventional or ultra-high dose rate (FLASH), in adult male Sprague Dawley rats.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18759] doi:10.1038/s41598-025-95178-5 [paper, data]

Feature-aware domain invariant representation learning for EEG motor imagery decoding.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[18760] doi:10.1038/s41698-025-00884-y [paper, repository]

MRI transformer deep learning and radiomics for predicting IDH wild type TERT promoter mutant gliomas.

Journal: NPJ precision oncology

Authors' code: radiology111/Glioma_CrossFormer (no license), OnekeyAI-Platform (no license)

Status: code verified, 64 files readable, 1 match

[18761] doi:10.1038/s44319-025-00425-5 [paper, repository]

Praja2 controls P-body assembly and translation in glioblastoma by non-proteolytic ubiquitylation of DDX6.

Journal: EMBO reports

Authors' code: marseille-proteomique/DIAgui (no license)

Status: code verified, 29 files readable, 2 matches

[18762] doi:10.1073/pnas.2406684122 [paper, data]

Expectation-dependent stimulus selectivity in the ventral visual cortical pathway.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[18763] doi:10.1073/pnas.2420815122 [paper, repository]

Bayesian inference by visuomotor neurons in the prefrontal cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: andrefrancois22/Bayesian_Inference_PAG (no license)

Status: code verified, 35 files readable, 11 matches

[18764] doi:10.1083/jcb.202406133 [paper, repository]

The postsynaptic density in excitatory synapses is composed of clustered, heterogeneous nanoblocks.

Journal: The Journal of cell biology

Authors' code: qiangjunzhou-cryoET/Postsynaptic_density-Tomo (no license)

Status: code verified, 6 files readable

[18765] doi:10.1093/braincomms/fcaf118 [paper]

Beyond the cerebellum: perivascular space burden in spinocerebellar ataxia type 3 extends to multiple brain regions.

Journal: Brain communications

Status: code on request

[18766] doi:10.1162/imag_a_00517 [paper, repository]

Cerebral topographies of perceived and felt emotions.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: santavis/social-vision-in-cinema (MIT)

Status: code verified, 45 files readable, 2 matches

[18767] doi:10.1162/imag_a_00521 [paper]

Simultaneous and synchronous characterization of blood and CSF flow dynamics using multiple Venc PC MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[18768] doi:10.1172/jci179881 [paper, repository]

Prefrontal correlates of fear generalization during endocannabinoid depletion.

Journal: The Journal of clinical investigation

Authors' code: luisrosasvidal/Rosas-Vidal2025 (GPL-3.0)

Status: code verified, 6 files readable, 3 matches

[18769] doi:10.1186/s12885-025-13948-w [paper, data]

Distinct 5-methylcytosine profiles of LncRNA in breast cancer brain metastasis.

Journal: BMC cancer

Status: data only, 1 dataset cited

[18770] doi:10.1186/s12974-025-03417-3 [paper, repository]

Akkermansia mono-colonization modulates microglia and astrocytes in a strain specific manner.

Journal: Journal of neuroinflammation

Authors' code: tobylanser/akk_monocolonization (no license)

Status: code verified, 6 files readable, 1 match

[18771] doi:10.1186/s42523-025-00397-w [paper, data]

Idiopathic epilepsy in dogs is associated with dysbiotic faecal microbiota.

Journal: Animal microbiome

Status: data only, 1 dataset cited

[18772] doi:10.1242/dev.204244 [paper, repository]

A single-cell transcriptomic atlas of sensory-dependent gene expression in developing mouse visual cortex.

Journal: Development (Cambridge, England)

Authors' code: cheadlelab/snRNA_V1 (no license)

Status: code verified, 27 files readable, 16 matches

[18773] doi:10.3389/fgene.2025.1500090 [paper, data]

Etiology and clinical features of Han Chinese patients with Duane retraction syndrome.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[18774] doi:10.3390/antiox14040396 [paper, repository]

Evaluation of Additive Neuroprotective Effect of Combination Therapy for Parkinson's Disease Using In Vitro Models.

Journal: Antioxidants (Basel, Switzerland)

Authors' code: Zenodo 3875761 (CC-BY-4.0), Zenodo 3361000 (CC-BY-4.0)

Status: empty repository

[18775] doi:10.3390/cancers17071122 [paper, data]

Positive Prognostic Overall Survival Impacts of Methylated <i>TGFB2</i> and <i>MGMT</i> in Adult Glioblastoma Patients.

Journal: Cancers

Status: data only, 1 dataset cited

[18776] doi:10.3390/e27040344 [paper, repository]

The Geometry of Concepts: Sparse Autoencoder Feature Structure.

Journal: Entropy (Basel, Switzerland)

Authors' code: ejmichaud/feature-geometry (no license)

Status: code verified, 27 files readable, 5 matches

[18777] doi:10.3390/ijms26073079 [paper, data]

Novel <i>SCYL2</i> Mutations and Arthrogryposis Multiplex Congenita 4: Case Report and Review of the Literature.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[18778] doi:10.3758/s13415-025-01284-2 [paper]

The impact of emotional feedback in learning easy and difficult tasks - an ERP study.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request

Wednesday, 26 March 2025 (47 papers, 38 on this page)

[18779] doi:10.1007/s41666-025-00197-6 [paper, repository]

Behavioral Clusters and Lesion Distributions in Ischemic Stroke, Based on NIHSS Similarity Network.

Journal: Journal of healthcare informatics research

Authors' code: livioivil/r41sqrt10 (no license), MedMaxLab/nihss_clustering (MIT)

Status: code verified, 35 files readable, 7 matches

[18780] doi:10.1016/j.dcn.2025.101557 [paper, repository]

Inhibitory control development from infancy to early childhood: A longitudinal fNIRS study.

Journal: Developmental cognitive neuroscience

Authors' code: figshare 13258814 (CC-BY-4.0), OSF n7zyx (no license)

Status: code verified, 25 files readable

[18781] doi:10.1016/j.isci.2025.112293 [paper, repository]

A central role for Numb/Nbl in multiple Shh-mediated axon repulsion processes.

Journal: iScience

Authors' code: ncbi.nlm.nih.gov/geo/query (no license)

Status: code verified

[18782] doi:10.1016/j.psychres.2025.116465 [paper]

Sex dependent genetic architecture of biochemically verified tobacco use.

Journal: Psychiatry research

Status: code on request

[18783] doi:10.1016/j.redox.2025.103620 [paper, data]

Design of anti-depressant phosphodiester amino acidic Keap1-Nrf2 protein-protein interaction inhibitors.

Journal: Redox biology

Status: data only, 1 dataset cited

[18784] doi:10.1021/acs.biochem.4c00809 [paper, data]

Shapeshifter W-Tau Peptide Inhibits Tau Aggregation and Disintegrates Paired Helical Filaments.

Journal: Biochemistry

Status: data only, 1 dataset cited

[18785] doi:10.1038/s41380-025-02964-8 [paper]

The neural pathway from the superior subpart of the medial habenula to the interpeduncular nucleus suppresses anxiety.

Journal: Molecular psychiatry

Status: code on request

[18786] doi:10.1038/s41398-025-03327-1 [paper, data]

Brain asymmetry and its association with inattention and heritability during neurodevelopment.

Journal: Translational psychiatry

Status: data only, 2 datasets cited

[18787] doi:10.1038/s41439-025-00310-6 [paper, data]

Nonrecurrent 17p duplications in two patients with developmental and neurological abnormalities.

Journal: Human genome variation

Status: data only, 2 datasets cited

[18788] doi:10.1038/s41467-025-57976-3 [paper, repository]

Dynamics of evoked responses in hippocampal pathways are encoded by the duration of vigilance states.

Journal: Nature communications

Authors' code: figshare 28349141 (CC-BY-4.0)

Status: code verified, 2 files readable, 2 matches

[18789] doi:10.1038/s41467-025-58003-1 [paper, repository]

Broadband visual stimuli improve neuronal representation and sensory perception.

Journal: Nature communications

Authors' code: jcouto/labcams (GPL-3.0), AachenBrainLab/Eyes_Wide_Bandwidth (no license)

Status: code verified, 100 files readable, 19 matches

[18790] doi:10.1038/s41467-025-58091-z [paper, repository]

Data-driven design of shape-programmable magnetic soft materials.

Journal: Nature communications

Authors' code: AlpKaracakol/data_driven_magnetic_soft_material_design (MIT), Zenodo 14827691 (no license)

Status: code verified, 338 files readable, 7 matches

[18791] doi:10.1038/s41467-025-58098-6 [paper, repository]

CREB3 gain of function variants protect against ALS.

Journal: Nature communications

Authors' code: SalimMegat/CREB3_ALS_resilience (no license)

Status: code verified, 13 files readable, 11 matches

[18792] doi:10.1038/s41467-025-58143-4 [paper]

Dissociable roles of distinct thalamic circuits in learning reaches to spatial targets.

Journal: Nature communications

Status: code on request

[18793] doi:10.1038/s41467-025-58303-6 [paper, repository]

Non-muscle myosin II inhibition at the site of axon injury increases axon regeneration.

Journal: Nature communications

Authors' code: selwynjayakar/Multi-image-neurite-analysis (no license)

Status: code verified, 3 files readable

[18794] doi:10.1038/s41467-025-58366-5 [paper, repository]

Combined targeting of glioblastoma stem cells of different cellular states disrupts malignant progression.

Journal: Nature communications

Authors' code: Zenodo 22040374 (MIT)

Status: code verified, 12 files readable, 1 match

[18795] doi:10.1038/s41556-025-01623-y [paper, data]

Proteostasis and lysosomal repair deficits in transdifferentiated neurons of Alzheimer's disease.

Journal: Nature cell biology

Status: data only, 1 dataset cited

[18796] doi:10.1038/s41586-025-08742-4 [paper, repository]

Synaptic and neural behaviours in a standard silicon transistor.

Journal: Nature

Authors' code: Zenodo 13843362 (CC-BY-4.0)

Status: code verified, 1 file readable

[18797] doi:10.1038/s41586-025-08746-0 [paper, repository]

Connectome-driven neural inventory of a complete visual system.

Journal: Nature

Authors' code: saalfeldlab/render (GPL-2.0), saalfeldlab/hot-knife (GPL-2.0), saalfeldlab/template-building (BSD-2-Clause), sp4cerat/Fast-Quadric-Mesh-Simplification (MIT), Zenodo 10891950 (CC-BY-4.0), navis-org/navis (GPL-3.0), flyconnectome/ol_annotations (no license), reiserlab/male-drosophila-visual-system-connectome-code (GPL-3.0), Zenodo 7592899 (BSD-3-Clause), Zenodo 4699382 (GPL-3.0), Zenodo 10366992 (CC-BY-4.0), Zenodo 13633521 (GPL-3.0), Zenodo 15045306 (GPL-3.0), reiserlab/male-drosophila-visual-system-connectome (CC-BY-4.0), Zenodo 15015112 (CC-BY-4.0), connectome-neuprint/neuvid (BSD-3-Clause), connectome-neuprint/neuprint-python (BSD-3-Clause)

Status: code verified, 2,442 files readable, 20 matches

[18798] doi:10.1038/s41586-025-08748-y [paper, repository]

Changes in neurotensin signalling drive hedonic devaluation in obesity.

Journal: Nature

Authors' code: neuralynx.fh-co.com/research-software (no license), hanlab-osu/mouseactivity (no license), lintianlab (no license), Llamero/DIY_Epifluorescence_Macroscope (CC-BY-SA-4.0), handejong/Fipster (no license), lammellab (no license)

Status: code verified, 26 files readable

[18799] doi:10.1038/s41586-025-08770-0 [paper, data]

Glutamate gating of AMPA-subtype iGluRs at physiological temperatures.

Journal: Nature

Status: data only, 19 datasets cited

[18800] doi:10.1038/s41598-025-92566-9 [paper, repository]

Discovering interaction mechanisms in crowds via deep generative surrogate experiments.

Journal: Scientific reports

Authors' code: kminartz/NeCS (no license)

Status: code verified, 14 files readable, 12 matches

[18801] doi:10.1038/s41598-025-93948-9 [paper, data]

Neural entrainment to the beat and working memory predict sensorimotor synchronization skills.

Journal: Scientific reports

Status: data only, 1 dataset cited

[18802] doi:10.1038/s42003-025-07939-7 [paper, repository]

The lifelong nonlinear development of spatial variability of brain signals.

Journal: Communications biology

Authors' code: Zenodo 15003714 (CC-BY-4.0), Zenodo 15003715 (CC-BY-4.0)

Status: code verified, 10 files readable, 3 matches

[18803] doi:10.1093/braincomms/fcaf124 [paper, repository]

Absence of GluN2A in hippocampal CA1 neurons leads to altered dendritic structure and reduced frequency of miniature excitatory synaptic events.

Journal: Brain communications

Authors' code: adj-4/intrinsicanalysis (no license)

Status: code verified, 12 files readable

[18804] doi:10.1098/rsos.241539 [paper, repository]

A large population of cell-specific action potential models replicating fluorescence recordings of voltage in rabbit ventricular myocytes.

Journal: Royal Society open science

Authors' code: Zenodo 11191649 (CC-BY-4.0), rsimitev/cell_specific_populations (no license)

Status: code verified, 6 files readable, 2 matches

[18805] doi:10.1098/rsos.241665 [paper, repository]

The cerebellum converts input data into a hyper low-resolution granule cell code with spatial dimensions: a hypothesis.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7676032 (no license)

Status: code found, still to be checked

[18806] doi:10.1098/rspb.2025.0272 [paper, repository]

Enhanced and idiosyncratic neural representations of personally typical scenes.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7702797 (no license)

Status: code found, still to be checked

[18807] doi:10.1107/s2059798325002025 [paper, repository]

InstaMap: instant-NGP for cryo-EM density maps.

Journal: Acta crystallographica. Section D, Structural biology

Authors' code: NVlabs/tiny-cuda-nn (BSD-3-Clause), OSF 8h6fz (no license)

Status: code verified, 102 files readable, 8 matches

[18808] doi:10.1126/sciadv.adp5782 [paper, repository]

Activity-dependent regulation of Cdc42 by Ephexin5 drives synapse growth and stabilization.

Journal: Science advances

Authors' code: doi:10.5061/dryad.dr7sqvb8b (no license)

Status: code verified

[18809] doi:10.1126/sciadv.adr9916 [paper, repository]

Frontal noradrenergic and cholinergic transients exhibit distinct spatiotemporal dynamics during competitive decision-making.

Journal: Science advances

Authors' code: doi:10.5061/dryad.h44j0zpwk (no license), Kwan-Lab/wangortega2025 (no license), Zenodo 14298235 (MIT)

Status: code verified, 363 files readable, 11 matches

[18810] doi:10.1126/sciadv.ads4441 [paper, repository]

Reelin marks cocaine-activated striatal neurons, promotes neuronal excitability, and regulates cocaine reward.

Journal: Science advances

Authors' code: LieberInstitute/dotdotdot (AGPL-3.0), Zenodo 14201265 (CC-BY-4.0), jeremy-day-lab/brida_reln_2024 (no license)

Status: code verified, 117 files readable, 12 matches

[18811] doi:10.1186/s13229-025-00654-4 [paper, data]

The "Tetris effect": autistic and non-autistic people share an implicit drive for perceptual cohesion.

Journal: Molecular autism

Status: data only, 1 dataset cited

[18812] doi:10.1186/s40478-025-01977-2 [paper, data]

C9ORF72 poly-PR disrupts expression of ALS/FTD-implicated STMN2 through SRSF7.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[18813] doi:10.1371/journal.pbio.3003014 [paper, repository]

The dorsal fan-shaped body is a neurochemically heterogeneous sleep-regulating center in Drosophila.

Journal: PLoS biology

Authors' code: mcellinj/Dissel-lab-arousal-apparatus (CC0-1.0)

Status: code verified, 6 files readable

[18814] doi:10.1371/journal.pone.0319208 [paper, repository]

PUNCH2: Explore the strategy for intrinsically disordered protein predictor.

Journal: PloS one

Authors' code: deemeng/punch2 (no license), deemeng/punch2_light (no license)

Status: code verified, 68 files readable

[18815] doi:10.1371/journal.pone.0319702 [paper, data]

Impact of transcranial alternating current stimulation on psychological stress: A functional near-infrared spectroscopy study.

Journal: PloS one

Status: data only, 1 dataset cited

[18816] doi:10.1371/journal.pone.0320233 [paper, repository]

Evidence for a constant occipital spotlight of attention using MVPA on EEG data.

Journal: PloS one

Authors' code: OSF 8e9c7 (no license)

Status: code verified, 8 files readable, 9 matches

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