Every paper, by date: page 86

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 86 of 200: 17 March 2025 to 8 March 2025.

Monday, 17 March 2025 (38 papers, 37 on this page)

[19041] doi:10.1007/s12264-025-01371-x [paper, repository]

Neural Dynamics of Visual Stream Interactions During Memory-Guided Actions Investigated by Intracranial EEG.

Journal: Neuroscience bulletin

Authors' code: kamilvlcek/ieeg_scripts (GPL-3.0)

Status: code verified, 172 files readable, 16 matches

[19042] doi:10.1016/j.bpsgos.2025.100482 [paper, repository]

Integration of Metabolomic and Brain Imaging Data Highlights Pleiotropy Among Posttraumatic Stress Disorder, Glycoprotein Acetyls, and Pallidum Structure.

Journal: Biological psychiatry global open science

Authors' code: bulik/ldsc (GPL-3.0), lukejoconnor/LCV (no license)

Status: code verified, 39 files readable, 1 match

[19043] doi:10.1016/j.crmeth.2025.101011 [paper, repository]

A comprehensive and standardized pipeline for automated profiling of higher cognition in mice.

Journal: Cell reports methods

Authors' code: vgastaldi/IntelliR (GPL-3.0), Zenodo 14912688 (CC-BY-4.0)

Status: code verified, 20 files readable, 8 matches

[19044] doi:10.1016/j.dib.2025.111479 [paper, data]

Exploring brain health knowledge and practices in young adults in Cuba: Dataset.

Journal: Data in brief

Status: data only, 3 datasets cited

[19045] doi:10.1016/j.isci.2025.112226 [paper, repository]

Normalization and cross-entropy connectivity in brain disease classification.

Journal: iScience

Authors' code: monk5469/Entropy (no license)

Status: code verified, 187 files readable, 4 matches

[19046] doi:10.1016/j.isci.2025.112237 [paper, repository]

Segregation and integration of resting-state brain networks in a longitudinal long COVID cohort.

Journal: iScience

Authors' code: TobousRong/ADHD (no license)

Status: code verified, 6 files readable, 1 match

[19047] doi:10.1016/j.nicl.2025.103770 [paper, data]

Altered cerebellar activation patterns in Alzheimer's disease: An activation likelihood estimation Meta-Analysis.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[19048] doi:10.1038/s41398-025-03306-6 [paper, data]

Predictive neural processing of self-generated hand and tool actions in patients with schizophrenia spectrum disorders and healthy individuals.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[19049] doi:10.1038/s41531-025-00901-8 [paper, repository]

A PheWAS approach to identify associations of GBA1 variants with comprehensive phenotypes beyond neurological diseases.

Journal: NPJ Parkinson's disease

Authors' code: astrazeneca-cgr-publications/PEACOK (GPL-3.0)

Status: code verified, 34 files readable

[19050] doi:10.1038/s41597-025-04749-8 [paper, repository]

Hand kinematics, high-density sEMG comprising forearm and far-field potentials for motion intent recognition.

Journal: Scientific data

Authors' code: ZemelZhao/hdkw_kin (no license)

Status: code verified, 85 files readable, 5 matches

[19051] doi:10.1038/s41598-025-90095-z [paper, repository]

Overcoming the limitations of motion sensor models by considering dendritic computations.

Journal: Scientific reports

Authors' code: raullunadelvalle/MS-INRF (CC-BY-4.0)

Status: code verified, 22 files readable, 4 matches

[19052] doi:10.1038/s41598-025-91881-5 [paper]

Phase-lagged tACS between executive and default mode networks modulates working memory.

Journal: Scientific reports

Status: code on request

[19053] doi:10.1038/s41598-025-92741-y [paper, data]

Disproportionality analysis of post-marketing safety concerns associated with selumetinib in the FDA adverse event reporting system.

Journal: Scientific reports

Status: data only, 1 dataset cited

[19054] doi:10.1038/s41598-025-93589-y [paper, data]

Placebo treatment entails resource-dependent downregulation of negative inputs.

Journal: Scientific reports

Status: data only, 1 dataset cited

[19055] doi:10.1038/s41598-025-94358-7 [paper, repository]

Establishment and validation of a ResNet-based radiomics model for predicting prognosis in cervical spinal cord injury patients.

Journal: Scientific reports

Authors' code: Zenodo 11499435 (CC-BY-4.0), tristramfeng/csci_radiomics (no license)

Status: code verified, 4 files readable

[19056] doi:10.1038/s42003-025-07873-8 [paper, repository]

Cd248a regulates pericyte development and viability in zebrafish.

Journal: Communications biology

Authors' code: Zenodo 10048114 (CC-BY-4.0), farrelllab/2023_sur (CC0-1.0)

Status: code verified, 64 files readable, 2 matches

[19057] doi:10.1073/pnas.2313473122 [paper, data]

Constructed languages are processed by the same brain mechanisms as natural languages.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[19058] doi:10.1073/pnas.2411138122 [paper, data]

Avian cranial kinesis is the result of increased encephalization during the origin of birds.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[19059] doi:10.1088/1741-2552/adbcd9 [paper, repository]

Less is more: selection from a small set of options improves BCI velocity control.

Journal: Journal of neural engineering

Authors' code: Zenodo 12802804 (MIT)

Status: code verified, 13 files readable, 1 match

[19060] doi:10.1101/2025.03.13.643168 [paper, data]

Registered Report: Replication and Extension of Nozaradan, Peretz, Missal and Mouraux (2011)

Journal: bioRxiv (preprint)

Status: data only, 3 datasets cited

[19061] doi:10.1101/2025.03.17.25324107 [paper, repository]

In vivo mapping of striatal neurodegeneration in Huntington’s disease with Soma and Neurite Density Imaging

Journal: medRxiv (preprint)

Authors' code: palombom/SANDI-Matlab-Toolbox-Latest-Release (BSD-2-Clause)

Status: code verified, 90 files readable, 6 matches

[19062] doi:10.1101/2025.03.17.643651 [paper, repository]

Mechanistic quantification of the effects of genes, environment, and development on human behaviour

Journal: bioRxiv (preprint)

Authors' code: Zenodo 19881503 (CC-BY-4.0)

Status: code verified, 35 files readable, 2 matches

[19063] doi:10.1109/tmi.2024.3485554 [paper, repository]

Multi-Center Fetal Brain Tissue Annotation (FeTA) Challenge 2022 Results.

Journal: IEEE transactions on medical imaging

Authors' code: hub.docker.com/u/fetachallenge22 (no license), deepmind/surface-distance (Apache-2.0), Zenodo 10628648 (CC-BY-NC-4.0), Zenodo 10628647 (CC-BY-NC-4.0), Zenodo 6683366 (CC-BY-ND-4.0), Zenodo 3878564 (GPL-3.0)

Status: code verified, 8 files readable

[19064] doi:10.1113/jp287913 [paper, repository]

Unlocking the full potential of high-density surface EMG: novel non-invasive high-yield motor unit decomposition.

Journal: The Journal of physiology

Authors' code: AgneGris/swarm-contrastive-decomposition (BSD-3-Clause)

Status: code verified, 16 files readable, 2 matches

[19065] doi:10.1113/jp288141 [paper, repository]

Interictal discharges spread along local recurrent networks between tubers and surrounding cortex.

Journal: The Journal of physiology

Authors' code: roschkoenig/travelling_spikes (GPL-3.0)

Status: code verified, 43 files readable, 4 matches

[19066] doi:10.1177/13872877251317489 [paper, data]

Alzheimer's disease-like features in resting state EEG/fMRI of cognitively intact and healthy middle-aged <i>APOE</i>/<i>PICALM</i> risk carriers.

Journal: Journal of Alzheimer's disease : JAD

Status: data only, 1 dataset cited

[19067] doi:10.1186/s13041-025-01192-z [paper, data]

Moderate ethanol exposure disrupts energy homesotasis between central and peripheral system in APP/PS1 mice.

Journal: Molecular brain

Status: data only, 1 dataset cited

[19068] doi:10.1186/s40708-025-00255-0 [paper, repository]

Exploring multi-granularity balance strategy for class incremental learning via three-way granular computing.

Journal: Brain informatics

Authors' code: yuhongcqupt/MGBCIL (no license)

Status: empty repository, 1 file readable

[19069] doi:10.1371/journal.pcbi.1012899 [paper, repository]

Predictive reward-prediction errors of climbing fiber inputs integrate modular reinforcement learning with supervised learning.

Journal: PLoS computational biology

Authors' code: hoang-atr/go_nogo (no license)

Status: code verified, 24 files readable, 5 matches

[19070] doi:10.1371/journal.pntd.0012877 [paper]

HL-IR mediates cinnamaldehyde repellency behavior in parthenogenetic Haemaphysalis longicornis.

Journal: PLoS neglected tropical diseases

Status: data only

[19071] doi:10.1371/journal.ppat.1012995 [paper, repository]

Eating the brain - A multidisciplinary study provides new insights into the mechanisms underlying the cytopathogenicity of Naegleria fowleri.

Journal: PLoS pathogens

Authors' code: vitdohnalek/Batch_AlphaFold2_multimer_v2 (MIT)

Status: code verified, 3 files readable

[19072] doi:10.1523/eneuro.0552-24.2025 [paper, repository]

Astrocytes in the External Globus Pallidus Selectively Represent Routine Formation During Repeated Reward-Seeking in Mice.

Journal: eNeuro

Authors' code: brain-machine-intelligence/Yang_eNeuro_2025 (no license)

Status: dead link

[19073] doi:10.3389/fnagi.2025.1535094 [paper, data]

Strategic delivery of omega-3 fatty acids for modulating inflammatory neurodegenerative diseases.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[19074] doi:10.3389/fneur.2025.1526966 [paper]

Identification and validation of biomarkers associated with mitochondrial dysfunction and ferroptosis in rat spinal cord injury.

Journal: Frontiers in neurology

Status: data only

[19075] doi:10.3389/fnins.2025.1535088 [paper, repository]

Multiple voxel pattern analysis shows associations between chronic fatigue syndrome and cortical atrophy.

Journal: Frontiers in neuroscience

Authors' code: clancy-wu/paperscripts (no license)

Status: code verified, 36 files readable, 5 matches

[19076] doi:10.7554/elife.101733 [paper, repository]

Proactive distractor suppression in early visual cortex.

Journal: eLife

Authors' code: OSF g4rxv (no license)

Status: code verified

[19077] doi:10.7759/cureus.80694 [paper, data]

Increase in Brain-Derived Neurotrophic Factor After Cycling Exercise Resisting Electrically Stimulated Antagonist Muscle Contractions in Overweight Japanese People: A Randomized, Controlled, Single-Blind, Crossover Trial.

Journal: Cureus

Status: data only, 1 dataset cited

Sunday, 16 March 2025 (11 papers)

[19078] doi:10.1007/s12149-025-02038-3 [paper, repository]

Fully automatic categorical analysis of striatal subregions in dopamine transporter SPECT using a convolutional neural network.

Journal: Annals of nuclear medicine

Authors' code: ThomasBudd/dat_spect_ud (MIT)

Status: code verified, 10 files readable

[19079] doi:10.1016/j.celrep.2025.115429 [paper, repository]

Neural correlates of minimal recognizable configurations in the human brain.

Journal: Cell reports

Authors' code: kreimanlab.com/code/mirc (no license)

Status: code verified

[19080] doi:10.1016/j.isci.2025.112227 [paper]

The l,d-transpeptidation pathway is inhibited by antibiotics of the β-lactam class in <i>Clostridioides difficile</i>.

Journal: iScience

Status: code on request

[19081] doi:10.1016/j.neuroimage.2025.121125 [paper, data]

Mesoscale connectivity of the human hippocampus and fimbria revealed by ex vivo diffusion MRI.

Journal: NeuroImage

Status: data only, 1 dataset cited

[19082] doi:10.1038/s41467-025-57813-7 [paper]

Neural signatures of temporal anticipation in human cortex represent event probability density.

Journal: Nature communications

Status: code on request

[19083] doi:10.1038/s41598-025-93241-9 [paper, data]

Exploiting adaptive neuro-fuzzy inference systems for cognitive patterns in multimodal brain signal analysis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[19084] doi:10.1038/s42003-025-07889-0 [paper, repository]

Apparent Diffusion Coefficient fMRI shines light on white matter resting-state connectivity compared to BOLD.

Journal: Communications biology

Authors' code: Mic-map/DfMRI (no license), Mic-map/ADC_rsfMRI (no license)

Status: code verified, 2,009 files readable, 16 matches

[19085] doi:10.1186/s13550-025-01210-0 [paper, data]

Multinomial logistic regression algorithm for the classification of patients with parkinsonisms.

Journal: EJNMMI research

Status: code on request, 3 datasets cited

[19086] doi:10.3390/brainsci15030313 [paper, data]

Altered Hemispheric Asymmetry of Functional Hierarchy in Schizophrenia.

Journal: Brain sciences

Status: data only, 1 dataset cited

[19087] doi:10.3390/diagnostics15060743 [paper, data]

Application of Liquid Chromatography/Tandem Mass Spectrometry for Quantitative Analysis of Plasmalogens in Preadolescent Children-The Hokkaido Study.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[19088] doi:10.3390/toxics13030216 [paper, repository]

Biomonitoring-Based Risk Assessment of Pyrethroid Exposure in the U.S. Population: Application of High-Throughput and Physiologically Based Kinetic Models.

Journal: Toxics

Authors' code: nanhung/toxics-13-00216 (no license)

Status: dead link

Saturday, 15 March 2025 (12 papers)

[19089] doi:10.1002/mco2.70114 [paper, data]

A Single-Nucleus Transcriptomic Atlas Reveals Cellular and Genetic Characteristics of Alzheimer's-Like Pathology in Aging Tree Shrews.

Journal: MedComm

Status: data only, 1 dataset cited

[19090] doi:10.1002/mds.30167 [paper, repository]

Brain Imaging Phenotypes Associated with Polygenic Risk for Essential Tremor.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: getian107/PRScs (MIT), pngu.mgh.harvard.edu/purcell/plink (no license), HoumanAzizi/UKB_DTI_Pipeline (no license), research.23andme.com/collaborate (no license)

Status: code verified, 12 files readable

[19091] doi:10.1016/j.isci.2025.112223 [paper]

Testing the top-down feedback in the central visual field using the reversed depth illusion.

Journal: iScience

Status: code on request

[19092] doi:10.1038/s41467-025-57651-7 [paper, repository]

Axonal RNA localization is essential for long-term memory.

Journal: Nature communications

Authors' code: HibaLaghrissi/Synaptosome-and-IMP_iCLIP-analysis (GPL-3.0), Zenodo 14921462 (GPL-3.0)

Status: code verified, 14 files readable, 6 matches

[19093] doi:10.1038/s41467-025-57680-2 [paper, repository]

Neurotransmitters' white matter mapping unveils the neurochemical fingerprints of stroke.

Journal: Nature communications

Authors' code: NotaCS/Functionnectome (GPL-3.0), Pedro-N-Alves/NeuroT-Map (no license), Zenodo 14712890 (CC-BY-4.0)

Status: code verified, 28 files readable, 6 matches

[19094] doi:10.1038/s41467-025-57832-4 [paper, repository]

Cerebellar output shapes cortical preparatory activity during motor adaptation.

Journal: Nature communications

Authors' code: kadmon-lab/cortico-cerebellar-pathway (no license), Zenodo 14778754 (CC-BY-4.0)

Status: code verified, 9 files readable, 1 match

[19095] doi:10.1038/s41467-025-57860-0 [paper, repository]

Parvalbumin interneurons regulate rehabilitation-induced functional recovery after stroke and identify a rehabilitation drug.

Journal: Nature communications

Authors' code: Zenodo 14838078 (CC-BY-4.0)

Status: code verified, 16 files readable, 2 matches

[19096] doi:10.1038/s41597-025-04784-5 [paper, repository]

B(RAIN)<sup>2</sup>-BRAIN integrated Resource for Anatomy and Intracranial Neurophysiology.

Journal: Scientific data

Authors' code: B-RAIN-2/BRAIN-2-Quality-Control-and-Analysis-Toolbox (no license)

Status: code verified, 2 files readable, 1 match

[19097] doi:10.1038/s42003-025-07875-6 [paper, repository]

Enhanced insights into the genetic architecture of 3D cranial vault shape using pleiotropy-informed GWAS.

Journal: Communications biology

Authors' code: precimed/pleiofdr (GPL-3.0), doi:10.6084/m9.figshare.c.6858271.v1 (no license), figshare 7649024 (Apache-2.0), doi:10.6084/m9.figshare.c.5089841.v1 (no license), doi:10.6084/m9.figshare.c.7680035.v1 (no license), TheWebMonks/meshmonk (Apache-2.0)

Status: code verified, 621 files readable, 2 matches

[19098] doi:10.1101/2025.03.14.643363 [paper, data]

Correlative light and electron microscopy identifies circuit motifs underlying processing of noisy visual motion in larval zebrafish

Journal: bioRxiv (preprint)

Status: data only, 12 datasets cited

[19099] doi:10.1186/s40478-025-01961-w [paper, data]

Metabolic profiling of adult and pediatric gliomas reveals enriched glucose availability in pediatric gliomas and increased fatty acid oxidation in adult gliomas.

Journal: Acta neuropathologica communications

Status: data only, 7 datasets cited

[19100] doi:10.3390/s25061838 [paper, data]

Advancing Precision: A Comprehensive Review of MRI Segmentation Datasets from BraTS Challenges (2012-2025).

Journal: Sensors (Basel, Switzerland)

Status: data only, 5 datasets cited

Friday, 14 March 2025 (24 papers)

[19101] doi:10.1002/advs.202414813 [paper, repository]

Altered Neural Activity in the Mesoaccumbens Pathway Underlies Impaired Social Reward Processing in Shank3-Deficient Rats.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: tjd2002/tjd-shared-code (no license), Zenodo 10222543 (CC-BY-4.0)

Status: code verified, 118 files readable, 2 matches

[19102] doi:10.1002/aur.70020 [paper, repository]

Semi-Automated Multi-Label Classification of Autistic Mannerisms by Machine Learning on Post Hoc Skeletal Tracking.

Journal: Autism research : official journal of the International Society for Autism Research

Authors' code: chrstnlmlr/ml_asd (CC-BY-4.0)

Status: code verified, 8 files readable, 4 matches

[19103] doi:10.1007/s10142-025-01573-6 [paper, data]

Combined transcriptomic and proteomic analyses reveal relevant myelin features in mice with ischemic stroke.

Journal: Functional & integrative genomics

Status: data only, 1 dataset cited

[19104] doi:10.1016/j.ebiom.2025.105645 [paper, data]

The INO80E at 16p11.2 locus increases risk of schizophrenia in humans and induces schizophrenia-like phenotypes in mice.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[19105] doi:10.1016/j.media.2025.103537 [paper, repository]

A deep learning approach to multi-fiber parameter estimation and uncertainty quantification in diffusion MRI.

Journal: Medical image analysis

Authors' code: Will-Consagra/MultiFiberInversion (no license)

Status: code verified, 22 files readable, 4 matches

[19106] doi:10.1016/j.xpro.2025.103699 [paper]

Protocol for mouse carotid artery perfusion for in situ brain tissue fixation and parallel unfixed tissue collection.

Journal: STAR protocols

Status: code on request

[19107] doi:10.1038/s41467-025-57771-0 [paper]

Cholecystokinin neurons in the spinal trigeminal nucleus interpolaris regulate mechanically evoked predatory hunting in male mice.

Journal: Nature communications

Status: code on request

[19108] doi:10.1038/s41467-025-57924-1 [paper, repository]

Astrocytic pleiotrophin deficiency in the prefrontal cortex contributes to stress-induced depressive-like responses in male mice.

Journal: Nature communications

Authors' code: corrschi/snRNA-seq-of-MDD (no license)

Status: code verified, 17 files readable, 14 matches

[19109] doi:10.1038/s41593-025-01914-5 [paper, repository]

Endothelial TDP-43 depletion disrupts core blood-brain barrier pathways in neurodegeneration.

Journal: Nature neuroscience

Authors' code: pamurphyUCONN/2024_Omar (no license)

Status: code verified, 8 files readable, 9 matches

[19110] doi:10.1038/s41598-025-89479-y [paper, repository]

Multi-body sensor based drowsiness detection using convolutional programmed transfer VGG-16 neural network with automatic driving mode conversion.

Journal: Scientific reports

Authors' code: supreetldh2/Drowsiness (no license)

Status: dead link

[19111] doi:10.1038/s41598-025-93166-3 [paper]

Deep learning-based classification of hemiplegia and diplegia in cerebral palsy using postural control analysis.

Journal: Scientific reports

Status: code on request

[19112] doi:10.1038/s41598-025-93418-2 [paper, data]

Structured hashing with deep learning for modality, organ, and disease content sensitive medical image retrieval.

Journal: Scientific reports

Status: data only, 4 datasets cited

[19113] doi:10.1073/pnas.2420452122 [paper, repository]

Triggering and modulation of a complex behavior by a single peptidergic command neuron in <i>Drosophila</i>.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: AndresGarelli/Larva_Tracking_OpenCV (GPL-3.0)

Status: code verified, 8 files readable

[19114] doi:10.1093/braincomms/fcaf111 [paper, repository]

Appetite loss in patients with motor neuron disease: impact on weight loss and neural correlates of visual food cues.

Journal: Brain communications

Authors' code: doi:10.18112/openneuro.ds005874.v1.0.0 (no license)

Status: code verified

[19115] doi:10.1111/febs.70063 [paper, data]

Critical factors for flow cytometry analysis of the brain.

Journal: The FEBS journal

Status: data only, 1 dataset cited

[19116] doi:10.1126/sciadv.adr4155 [paper, repository]

PseudoSorter: A self-supervised spike sorting approach applied to reveal Tau-induced reductions in neuronal activity.

Journal: Science advances

Authors' code: MariusBrockhoff/ML_Spike_Sorting (MIT), Zenodo 14360059 (MIT)

Status: code verified, 44 files readable, 9 matches

[19117] doi:10.1126/sciadv.adr9668 [paper, repository]

Fast and reliable probabilistic reflectometry inversion with prior-amortized neural posterior estimation.

Journal: Science advances

Authors' code: Zenodo 14267737 (MIT), mlcolab/panpe (MIT), Zenodo 6497438 (CC-BY-4.0)

Status: code verified, 64 files readable, 6 matches

[19118] doi:10.1126/sciadv.ads6004 [paper, repository]

The sodium leak channel NALCN is regulated by neuronal SNARE complex proteins.

Journal: Science advances

Authors' code: Zenodo 13149886 (CC-BY-4.0)

Status: code verified

[19119] doi:10.1186/s12984-025-01595-y [paper]

A motor unit action potential-based method for surface electromyography decomposition.

Journal: Journal of neuroengineering and rehabilitation

Status: code on request

[19120] doi:10.1523/eneuro.0355-24.2025 [paper, data]

Correlated and Anticorrelated Binocular Disparity Modulate GABA+ and Glutamate/Glutamine Concentrations in the Human Visual Cortex.

Journal: eNeuro

Status: data only, 1 dataset cited

[19121] doi:10.1523/eneuro.0505-24.2025 [paper, repository]

Postmortem Interval Leads to Loss of Disease-Specific Signatures in Brain Tissue.

Journal: eNeuro

Authors' code: olneykimberly/PMI (MIT)

Status: code verified, 313 files readable, 15 matches

[19122] doi:10.3389/fncir.2025.1500227 [paper, repository]

Surrogate data analyses of the energy landscape analysis of resting-state brain activity.

Journal: Frontiers in neural circuits

Authors' code: teppei-matsui/EL (no license)

Status: dead link

[19123] doi:10.3389/fninf.2025.1541184 [paper, repository]

Developing a multiscale neural connectivity knowledgebase of the autonomic nervous system.

Journal: Frontiers in neuroinformatics

Authors' code: scicrunch/sckan-query-examples (no license), Zenodo 5519557 (CC-BY-4.0)

Status: code verified, 4 files readable, 5 matches

[19124] doi:10.7554/elife.93063 [paper, repository]

Microprism-based two-photon imaging of the mouse inferior colliculus reveals novel organizational principles of the auditory midbrain.

Journal: eLife

Authors' code: doi:10.5061/dryad.v41ns1s70 (no license), Zenodo 14946966 (MIT)

Status: code verified, 47 files readable, 6 matches

Thursday, 13 March 2025 (34 papers)

[19125] doi:10.1016/j.celrep.2025.115422 [paper, repository]

Transcriptional signatures of hippocampal tau pathology in primary age-related tauopathy and Alzheimer's disease.

Journal: Cell reports

Authors' code: gofflab/HCRProbeDesign (MIT), BenLangmead/bowtie2 (GPL-3.0), Zenodo 14834548 (CC-BY-4.0), rpalaganas/ad_part_tau_23 (no license)

Status: code verified, 228 files readable, 6 matches

[19126] doi:10.1016/j.dcn.2025.101542 [paper, repository]

BrainXcan identifies brain features associated with behavioral and psychiatric traits using large-scale genetic and imaging data.

Journal: Developmental cognitive neuroscience

Authors' code: hakyimlab/brainxcan (MIT), liangyy/ukb_idp_genetic_arch (MIT), hakyimlab/twas-inflation (no license)

Status: code verified, 441 files readable, 19 matches

[19127] doi:10.1016/j.ibneur.2025.03.005 [paper, data]

Height-dependent variation in corticospinal excitability modulation after active but not sham intermittent theta burst stimulation.

Journal: IBRO neuroscience reports

Status: data only, 1 dataset cited

[19128] doi:10.1016/j.isci.2025.112171 [paper, data]

Hippocampal and cortical high-frequency oscillations orchestrate human semantic networks during word list memory.

Journal: iScience

Status: code on request, 1 dataset cited

[19129] doi:10.1016/j.isci.2025.112220 [paper, repository]

NKCC1 inhibition improves sleep quality and EEG information content in a Down syndrome mouse model.

Journal: iScience

Authors' code: arthurpessa.github.io/ordpy (no license)

Status: code verified

[19130] doi:10.1038/s41398-025-03302-w [paper, repository]

"Surviving and Thriving": evidence for cortical GABA stabilization in cognitively-intact oldest-old adults.

Journal: Translational psychiatry

Authors' code: OSF ej6tv (no license)

Status: code verified, 4 files readable, 3 matches

[19131] doi:10.1038/s41467-025-56870-2 [paper, repository]

Nature exposure induces analgesic effects by acting on nociception-related neural processing.

Journal: Nature communications

Authors' code: OSF t8dqu (no license)

Status: code verified, 2 files readable, 4 matches

[19132] doi:10.1038/s41467-025-57428-y [paper, data]

A feedback circuitry involving γ-actin, β-actin and nonmuscle myosin-2 A controls tight junction and apical cortex mechanics.

Journal: Nature communications

Status: data only, 2 datasets cited

[19133] doi:10.1038/s41467-025-57644-6 [paper, repository]

Flexible hippocampal representation of abstract boundaries supports memory-guided choice.

Journal: Nature communications

Authors' code: minimaxir/imgbeddings (MIT), rsagroup/rsatoolbox (MIT), Decision-and-Memory-Group-at-UJI/AbstractBoundaries (no license)

Status: code verified, 164 files readable, 7 matches

[19134] doi:10.1038/s41514-025-00204-5 [paper]

The role of inhibitory and excitatory neurometabolites in age-related differences in action selection.

Journal: npj aging

Status: code on request

[19135] doi:10.1038/s41593-025-01906-5 [paper, repository]

An axonal brake on striatal dopamine output by cholinergic interneurons.

Journal: Nature neuroscience

Authors' code: craggASAP/Axonal_Brake (MIT), Zenodo 14622173 (MIT)

Status: code verified, 10 files readable

[19136] doi:10.1038/s41593-025-01910-9 [paper, repository]

Sympathetic and parasympathetic subtypes of body-first Lewy body disease observed in postmortem tissue from prediagnostic individuals.

Journal: Nature neuroscience

Authors' code: ucl-pond/pySuStaIn (MIT)

Status: code verified, 19 files readable

[19137] doi:10.1038/s41598-025-89904-2 [paper, data]

An intelligent emotion prediction system using improved sand cat optimization technique based on EEG signals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[19138] doi:10.1038/s41598-025-93084-4 [paper, repository]

Diffusion MRI with double diffusion encoding and variable mixing times disentangles water exchange from transient kurtosis.

Journal: Scientific reports

Authors' code: arthur-chakwizira/cti-mge (no license)

Status: code verified, 26 files readable

[19139] doi:10.1038/s41746-025-01552-y [paper, repository]

Continuous time and dynamic suicide attempt risk prediction with neural ordinary differential equations.

Journal: NPJ digital medicine

Authors' code: jaak-s/Event-GRU-ODE (MIT)

Status: code verified, 11 files readable, 2 matches

[19140] doi:10.1038/s42003-025-07862-x [paper, repository]

Whole-brain dynamics of articulatory, acoustic and semantic speech representations.

Journal: Communications biology

Authors' code: Zenodo 14887361 (MIT), neuralinterfacinglab/speechrepresentations (MIT)

Status: code verified, 10 files readable

[19141] doi:10.1038/s43587-025-00816-2 [paper, repository]

Interleukin-12 signaling drives Alzheimer's disease pathology through disrupting neuronal and oligodendrocyte homeostasis.

Journal: Nature aging

Authors' code: m21camby/AD_Neuroinflammation (no license), ngimber/AlzheimersWorkflow (no license)

Status: code verified, 226 files readable, 22 matches

[19142] doi:10.1073/pnas.2414636122 [paper, repository]

Infant EEG microstate dynamics relate to fine-grained patterns of infant attention during naturalistic play with caregivers.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: gaffreylab/Infant-Microstates-and-Attention (no license)

Status: code verified, 1 file readable, 2 matches

[19143] doi:10.1098/rsta.2024.0211 [paper, repository]

Evaluating the predictive accuracy of ion-channel models using data from multiple experimental designs.

Journal: Philosophical transactions. Series A, Mathematical, physical, and engineering sciences

Authors' code: Zenodo 14536882 (BSD-3-Clause)

Status: code verified, 13 files readable, 1 match

[19144] doi:10.1098/rsta.2024.0219 [paper, repository]

Bayesian inference informed by parameter subset selection for a minimal PBPK brain model.

Journal: Philosophical transactions. Series A, Mathematical, physical, and engineering sciences

Authors' code: Zenodo 14366956 (CC-BY-4.0)

Status: code verified, 7 files readable

[19145] doi:10.1101/2025.03.12.642610 [paper, repository]

Long-Horizon associative learning as a unifying framework for statistical learning across scales

Journal: bioRxiv (preprint)

Authors' code: OSF g65d7 (no license)

Status: code verified, 12 files readable, 1 match

[19146] doi:10.1136/bmjopen-2024-091099 [paper, repository]

Protocol and design of the REPOSE study: a double-blinded, randomised, placebo-controlled trial to evaluate the efficacy of suvorexant to improve postoperative sleep and reduce delirium severity in older patients undergoing non-cardiac surgery.

Journal: BMJ open

Authors' code: vivli.org (no license)

Status: code verified

[19147] doi:10.1162/imag_a_00489 [paper, repository]

Pushing the boundaries of MEG based on optically pumped magnetometers towards early human life.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 10213856 (CC-BY-4.0), Zenodo 10213974 (CC-BY-4.0), Zenodo 10213973 (CC-BY-4.0)

Status: code verified

[19148] doi:10.1177/0271678x251325399 [paper, repository]

Sex-specific effects of intensity and dose of physical activity on BOLD-fMRI cerebrovascular reactivity and cerebral pulsatility.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: bbfrederick/rapidtide (Apache-2.0)

Status: code verified, 362 files readable, 7 matches

[19149] doi:10.1186/s12974-025-03408-4 [paper, data]

Role of FPR2 antagonism in alleviating social isolation-induced depression and protecting blood-brain barrier integrity.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[19150] doi:10.1186/s13024-025-00817-0 [paper, data]

Probe-dependent Proximity Profiling (ProPPr) Uncovers Similarities and Differences in Phospho-Tau-Associated Proteomes Between Tauopathies.

Journal: Molecular neurodegeneration

Status: data only, 5 datasets cited

[19151] doi:10.1186/s40359-025-02561-y [paper, data]

The hidden route: an exploratory study on autonomic influences in early phases of information processing.

Journal: BMC psychology

Status: data only, 1 dataset cited

[19152] doi:10.2147/dddt.s506545 [paper, data]

Gut-Brain Axis-Based Polygala Tenuifolia and Magnolia Officinalis Improve D-gal-Induced Cognitive Impairment in Mice Through cAMP and NF-κB Signaling Pathways.

Journal: Drug design, development and therapy

Status: data only, 1 dataset cited

[19153] doi:10.3389/fncir.2025.1528309 [paper, repository]

Sparse connectivity enables efficient information processing in cortex-like artificial neural networks.

Journal: Frontiers in neural circuits

Authors' code: mpinb/sparseANNs (MIT)

Status: code verified

[19154] doi:10.3389/fnins.2025.1533253 [paper, data]

DYRK1A roles in human neural progenitors.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[19155] doi:10.3389/fphar.2025.1549953 [paper, repository]

Mechanism of nimodipine in treating neurodegenerative diseases: in silico target identification and molecular dynamic simulation.

Journal: Frontiers in pharmacology

Authors' code: busrasavas/gmx_corr (no license)

Status: code verified, 2 files readable

[19156] doi:10.3390/bioengineering12030286 [paper, data]

An Effective and Interpretable Sleep Stage Classification Approach Using Multi-Domain Electroencephalogram and Electrooculogram Features.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[19157] doi:10.3390/cells14060426 [paper, data]

Lateral Ventricular Neural Stem Cells Provide Negative Feedback to Circuit Activation Through GABAergic Signaling.

Journal: Cells

Status: data only, 1 dataset cited

[19158] doi:10.34133/bmef.0110 [paper, repository]

Graph-Based 3-Dimensional Spatial Gene Neighborhood Networks of Single Cells in Gels and Tissues.

Journal: BME frontiers

Authors' code: coskunlab/3D-spaGNN-E (no license)

Status: code verified, 16 files readable, 3 matches

Wednesday, 12 March 2025 (41 papers)

[19159] doi:10.1002/qub2.86 [paper, data]

Action functional as an early warning indicator in the space of probability measures via Schrödinger bridge.

Journal: Quantitative biology (Beijing, China)

Status: data only, 1 dataset cited

[19160] doi:10.1007/s44163-025-00241-9 [paper, data]

A review of machine learning and deep learning for Parkinson's disease detection.

Journal: Discover artificial intelligence

Status: data only, 3 datasets cited

[19161] doi:10.1016/j.celrep.2025.115409 [paper]

Microglia mediate the early-life programming of adult glucose control.

Journal: Cell reports

Status: code on request

[19162] doi:10.1016/j.dcn.2025.101551 [paper, repository]

A subset of cortical areas exhibit adult-like functional network patterns in early childhood.

Journal: Developmental cognitive neuroscience

Authors' code: DCAN-Labs/dcan-infant-pipeline (BSD-3-Clause), cindyhfls/Tu-2024-GordonSubset-DCN (MIT), Zenodo 15047992 (MIT), wheelocklab/tu-2025-gordonsubset-dcn (MIT)

Status: code verified, 210 files readable, 15 matches

[19163] doi:10.1016/j.isci.2025.112097 [paper, repository]

Anterior hypothalamic nucleus drives distinct defensive responses through cell-type-specific activity.

Journal: iScience

Authors' code: Zenodo 14781120 (CC-BY-4.0)

Status: code verified, 1 file readable

[19164] doi:10.1016/j.isci.2025.112207 [paper]

Functional and structural organization of medial entorhinal cortex layer VI.

Journal: iScience

Status: code on request

[19165] doi:10.1016/j.isci.2025.112210 [paper, data]

The <i>Iroquois</i> (<i>Iro/Irx</i>) homeobox genes are conserved Hox targets involved in motor neuron development.

Journal: iScience

Status: code on request, 1 dataset cited

[19166] doi:10.1016/j.jlr.2025.100776 [paper, data]

Hexokinase 2 promotes ISGylation of Acyl-CoA synthetase long-chain family member 4 in sepsis-induced microglia cells.

Journal: Journal of lipid research

Status: data only, 1 dataset cited

[19167] doi:10.1016/j.molpha.2025.100029 [paper, data]

The neuroprotective γ-hydroxybutyrate analog 3-hydroxycyclopent-1-enecarboxylic acid does not directly affect CaMKIIα autophosphorylation at T286 or binding to GluN2B.

Journal: Molecular pharmacology

Status: data only, 1 dataset cited

[19168] doi:10.1016/j.nicl.2025.103767 [paper, repository]

Neurometabolic network (NMetNet) for functional neurological disorder in children and adolescents.

Journal: NeuroImage. Clinical

Authors' code: lanzhouBWH/NMetNet_FND (no license)

Status: code verified, 3 files readable

[19169] doi:10.1038/s41417-025-00880-1 [paper]

Suppression of FOXO1 activity by SIRT1-mediated deacetylation weakening the intratumoral androgen autocrine function in glioblastoma.

Journal: Cancer gene therapy

Status: data only

[19170] doi:10.1038/s41419-025-07472-9 [paper, data]

CHCHD2 rescues the mitochondrial dysfunction in iPSC-derived neurons from patient with Mohr-Tranebjaerg syndrome.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[19171] doi:10.1038/s41420-025-02387-y [paper, data]

Deficiency of UBE3D in mice leads to severe embryonic abnormalities and disrupts the mRNA of Homeobox genes via CPSF3.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[19172] doi:10.1038/s41467-025-57766-x [paper, repository]

Electrophysiological signatures underlying variability in human memory consolidation.

Journal: Nature communications

Authors' code: Zenodo 14583770 (CC-BY-4.0), Zenodo 3259369 (CC-BY-4.0)

Status: code verified, 29 files readable, 6 matches

[19173] doi:10.1038/s41467-025-57783-w [paper, repository]

Integer topological defects offer a methodology to quantify and classify active cell monolayers.

Journal: Nature communications

Authors' code: Zenodo 14916704 (CC-BY-4.0), sano-msk/bayesian_inference_nematics (no license)

Status: code verified, 3 files readable

[19174] doi:10.1038/s41586-025-08705-9 [paper, repository]

Basis functions for complex social decisions in dorsomedial frontal cortex.

Journal: Nature

Authors' code: wittmannlab/BasisFunctions2024 (no license)

Status: code verified, 138 files readable, 2 matches

[19175] doi:10.1038/s41597-025-04725-2 [paper, repository]

FloodCastBench: A Large-Scale Dataset and Foundation Models for Flood Modeling and Forecasting.

Journal: Scientific data

Authors' code: HydroPML/FloodCastBench (no license)

Status: code verified, 16 files readable, 2 matches

[19176] doi:10.1038/s43856-025-00760-7 [paper, repository]

Remission of alcohol use disorder following traumatic brain injury with focal orbitofrontal cortex hemorrhage: case report and network mapping.

Journal: Communications medicine

Authors' code: lead-dbs.org (no license), Zenodo 4905738 (other-open), bchcohenlab/bids_to_cbig_fmri_preproc2016 (no license)

Status: code verified, 28 files readable

[19177] doi:10.1080/07853890.2025.2477301 [paper, data]

Identification and mechanism analysis of biomarkers related to butyrate metabolism in COVID-19 patients.

Journal: Annals of medicine

Status: data only, 2 datasets cited

[19178] doi:10.1091/mbc.e25-01-0021 [paper, repository]

Asymmetry of centrosomes in <i>Drosophila</i> neural stem cells requires protein phosphatase 4.

Journal: Molecular biology of the cell

Authors' code: Roberto-Carlos-Segura/PP4_paper_2024 (no license)

Status: code verified, 13 files readable, 1 match

[19179] doi:10.1093/braincomms/fcaf110 [paper, repository]

Mild traumatic brain injury increases cortical iron: evidence from individual susceptibility mapping.

Journal: Brain communications

Authors' code: ChristiEssex/QSMindividualised (no license), devonko (no license)

Status: code verified, 10 files readable

[19180] doi:10.1093/narmme/ugaf005 [paper, repository]

Neuromuscular dysfunction in patient-derived FUS<sup>R244RR</sup>-ALS iPSC model via axonal downregulation of neuromuscular junction proteins.

Journal: NAR molecular medicine

Authors' code: LauraBreimann/ALS_puro-PLA (MIT), Zenodo 14293534 (CC-BY-4.0), figshare 28418357 (CC-BY-4.0)

Status: code verified, 23 files readable, 16 matches

[19181] doi:10.1113/jp287595 [paper, repository]

Biophysical modelling of intrinsic cardiac nervous system neuronal electrophysiology based on single-cell transcriptomics.

Journal: The Journal of physiology

Authors' code: Daniel-Baugh-Institute/BiophysicalModellingOfIntrinsicCardiacNeurons (no license), modeldb:2018157 (no license), sparc.science/,10.26275/cy9w-ttjn (no license)

Status: code verified

[19182] doi:10.1126/sciadv.ado1164 [paper, data]

Shaping early neural development by timed elevated tissue oxygen tension: Insights from multiomic analysis on human cerebral organoids.

Journal: Science advances

Status: data only, 1 dataset cited

[19183] doi:10.1126/sciadv.adq0261 [paper, repository]

Thermosensory predictive coding underpins an illusion of pain.

Journal: Science advances

Authors' code: Zenodo 14141178 (CC-BY-4.0)

Status: code verified, 4 files readable, 4 matches

[19184] doi:10.1126/sciadv.adq2807 [paper, repository]

Synaptic-dependent developmental dysconnectivity in 22q11.2 deletion syndrome.

Journal: Science advances

Authors' code: fcp-indi/c-pac (GPL-3.0), Zenodo 13991845 (CC-BY-4.0), mvlombardo/utils (no license), Zenodo 10218169 (CC-BY-4.0), Zenodo 10218258 (CC-BY-4.0), Zenodo 10218158 (CC-BY-4.0), cmontani/functional-neuroimaging_rsfmri-seed-based-mapping (no license), cmontani/functional-neuroimaging-rsfmri-preprocessing (no license), cmontani/functional-neuroimaging__rsfmri-global-local-connectivity (no license), functional-neuroimaging/geneenrichment_22q11ds (no license)

Status: code verified, 350 files readable, 10 matches

[19185] doi:10.1126/sciadv.adr3757 [paper, repository]

Genetically supported targets and drug repurposing for brain aging: A systematic study in the UK Biobank.

Journal: Science advances

Authors' code: ZJU-BMI/bag_estimation (no license), Zenodo 14525707 (CC-BY-4.0)

Status: code verified, 162 files readable, 11 matches

[19186] doi:10.1186/s12987-024-00613-w [paper, data]

Hypoxemia exerts detrimental effects on the choroid plexuses and cerebrospinal fluid system in rats.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[19187] doi:10.1242/jcs.263844 [paper, repository]

Dynein-driven regulation of postsynaptic membrane architecture and synaptic function.

Journal: Journal of cell science

Authors' code: tp81/neisch-dynein-2021 (no license)

Status: code verified, 3 files readable

[19188] doi:10.1523/eneuro.0529-24.2025 [paper, repository]

MEDiCINe: Motion Correction for Neural Electrophysiology Recordings.

Journal: eNeuro

Authors' code: jazlab/medicine_paper (MIT), jazlab/medicine (MIT)

Status: code verified, 33 files readable, 9 matches

[19189] doi:10.1523/jneurosci.1385-24.2025 [paper, repository]

Local Differences in Network Organization in the Auditory and Parietal Cortex, Revealed with Single Neuron Activation.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: runyanlab/single_cell_influence_mapping (no license)

Status: dead link

[19190] doi:10.1523/jneurosci.1692-24.2025 [paper, data]

Local Regulation of Striatal Dopamine Release Shifts from Predominantly Cholinergic in Mice to GABAergic in Macaques.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[19191] doi:10.17912/micropub.biology.001537 [paper, data]

Transcripts from the <i>src-1(cj293)</i> mutant can encode a SRC-1 molecule lacking the SH2 domain in <i>Caenorhabditis elegans</i>.

Journal: microPublication biology

Status: data only, 2 datasets cited

[19192] doi:10.3389/fncel.2024.1477511 [paper, data]

Translational profiling reveals novel gene expression changes in the direct and indirect pathways in a mouse model of levodopa induced dyskinesia.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[19193] doi:10.3389/fnins.2025.1519011 [paper, repository]

Exploring athletic expertise and conflict processing: behavioral and neural responses to head fakes and flanker tasks.

Journal: Frontiers in neuroscience

Authors' code: OSF 6ftmx (no license)

Status: code verified, 5 files readable, 1 match

[19194] doi:10.3389/fnins.2025.1543206 [paper, repository]

Real-time fMRI using multi-band echo-volumar imaging with millimeter spatial resolution and sub-second temporal resolution at 3 tesla.

Journal: Frontiers in neuroscience

Authors' code: SteenMoeller/NORDIC_Raw (other)

Status: code verified, 7 files readable

[19195] doi:10.3390/s25061768 [paper, repository]

Time-Normalization Approach for fNIRS Data During Tasks with High Variability in Duration.

Journal: Sensors (Basel, Switzerland)

Authors' code: Zenodo 10043158 (CC-BY-NC-4.0)

Status: code verified, 2 files readable, 1 match

[19196] doi:10.3390/v17030405 [paper, data]

Mild Zika Virus Infection in Mice Without Motor Impairments Induces Working Memory Deficits, Anxiety-like Behaviors, and Dysregulation of Immunity and Synaptic Vesicle Pathways.

Journal: Viruses

Status: data only, 1 dataset cited

[19197] doi:10.7554/elife.95802 [paper, repository]

A statistical framework for analysis of trial-level temporal dynamics in fiber photometry experiments.

Journal: eLife

Authors' code: gloewing/fastFMM (no license), gloewing/photometry_fLMM (CC0-1.0)

Status: code verified, 69 files readable, 24 matches

[19198] doi:10.7554/elife.95823 [paper, repository]

Using normative models pre-trained on cross-sectional data to evaluate intra-individual longitudinal changes in neuroimaging data.

Journal: eLife

Authors' code: predictive-clinical-neuroscience/braincharts (GPL-3.0)

Status: code verified, 11 files readable

[19199] doi:10.7554/elife.96944 [paper, repository]

Unraveling the impact of congenital deafness on individual brain organization.

Journal: eLife

Authors' code: OSF yvkmf (no license)

Status: code verified, 1 file readable, 2 matches

Tuesday, 11 March 2025 (36 papers)

[19200] doi:10.1002/cns3.20108 [paper, data]

Coordinate Network Mapping of Focal Brain Volume Differences in ADHD Reveals Common Patterns That Lack Specificity: A Systematic Review.

Journal: Annals of the Child Neurology Society

Status: code on request, 1 dataset cited

[19201] doi:10.1007/s42113-025-00235-x [paper, repository]

Explaining Human Comparisons Using Alignment-Importance Heatmaps.

Journal: Computational brain & behavior

Authors' code: tlmnhut/ais_heatmap (no license)

Status: code verified, 9 files readable, 2 matches

[19202] doi:10.1016/j.isci.2025.112194 [paper, data]

Accessing genetically defined cell types in the superior colliculus with transgenic mouse lines.

Journal: iScience

Status: data only, 1 dataset cited

[19203] doi:10.1016/j.isci.2025.112199 [paper, repository]

Brain-like border ownership signals support prediction of natural videos.

Journal: iScience

Authors' code: figshare 28533842 (CC-BY-4.0), coxlab/prednet (MIT), AgeYY/BOS-in-Video-Prediction (MIT)

Status: code verified, 234 files readable, 4 matches

[19204] doi:10.1016/j.isci.2025.112200 [paper]

A Cdk5 inhibitor restores cognitive function and alleviates type 2 diabetes in mice.

Journal: iScience

Status: code on request

[19205] doi:10.1016/j.isci.2025.112201 [paper, repository]

Microglia target synaptic sites early during excitatory circuit disassembly in neurodegeneration.

Journal: iScience

Authors' code: Zenodo 14757201 (CC-BY-4.0), lucadellasantina (no license)

Status: code verified, 6 files readable, 1 match

[19206] doi:10.1016/j.xpro.2025.103678 [paper, data]

Protocol for generating human cerebral organoids from two-dimensional cultures of pluripotent stem cells bypassing embryoid body aggregation.

Journal: STAR protocols

Status: data only, 1 dataset cited

[19207] doi:10.1038/s41421-024-00764-y [paper, repository]

In-depth and high-throughput spatial proteomics for whole-tissue slice profiling by deep learning-facilitated sparse sampling strategy.

Journal: Cell discovery

Authors' code: ma-jc/deeps4p (no license)

Status: code verified, 5 files readable, 4 matches

[19208] doi:10.1038/s41467-025-56660-w [paper, repository]

Dopaminergic modulation and dosage effects on brain state dynamics and working memory component processes in Parkinson's disease.

Journal: Nature communications

Authors' code: Zenodo 14567445 (CC-BY-4.0), scsnl/bwl_naturecomm_2024 (no license)

Status: code verified, 70 files readable, 13 matches

[19209] doi:10.1038/s41467-025-57682-0 [paper, repository]

Major depressive disorder on a neuromorphic continuum.

Journal: Nature communications

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0)

Status: code verified, 50 files readable

[19210] doi:10.1038/s41467-025-57699-5 [paper, repository]

PTN activity in quiescent neural stem cells mediates Shank3 overexpression-induced manic behavior.

Journal: Nature communications

Authors' code: Jobang9286/PTN_qNSC_scRNAseq (no license), Zenodo 14915356 (CC-BY-4.0), jobang9286/ptn_qnsc_scrnaseq-by-byounggook-cho (no license)

Status: code verified

[19211] doi:10.1038/s41531-025-00899-z [paper, data]

Longitudinal multi-omics in alpha-synuclein Drosophila model discriminates disease- from age-associated pathologies in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[19212] doi:10.1038/s41598-024-82292-z [paper, data]

Age-related differences in the relationship between confidence and false memory in a mnemonic discrimination task.

Journal: Scientific reports

Status: data only, 1 dataset cited

[19213] doi:10.1038/s41598-025-92577-6 [paper, repository]

A comprehensive interpretable machine learning framework for mild cognitive impairment and Alzheimer's disease diagnosis.

Journal: Scientific reports

Authors' code: Marily-Vlontzou/XAI-framework-for-MCI-AD-diagnosis (no license)

Status: code verified, 2 files readable, 2 matches

[19214] doi:10.1038/s41598-025-92898-6 [paper, repository]

Neural responses to emotional displays by politicians: differential mu and alpha suppression patterns in response to in-party and out-party leaders.

Journal: Scientific reports

Authors' code: OSF dsfgv (no license)

Status: code verified, 9 files readable, 7 matches

[19215] doi:10.1038/s42003-025-07576-0 [paper, repository]

Transient destabilization of whole brain dynamics induced by N,N-Dimethyltryptamine (DMT).

Journal: Communications biology

Authors' code: juanpiccinini/DMT-whole-brain (no license)

Status: code verified, 9 files readable, 2 matches

[19216] doi:10.1038/s42003-025-07861-y [paper, data]

Hierarchical and distinct biological motion processing in macaque visual cortical areas MT and MST.

Journal: Communications biology

Status: code on request, 1 dataset cited

[19217] doi:10.1038/s42003-025-07872-9 [paper, repository]

Infusing structural assumptions into dimensionality reduction for single-cell RNA sequencing data to identify small gene sets.

Journal: Communications biology

Authors' code: NiklasBrunn/BoostingAutoencoder (MIT)

Status: code verified, 27 files readable, 29 matches

[19218] doi:10.1038/s42003-025-07874-7 [paper, data]

A glutamatergic innervation from medial area of secondary visual cortex to lateral posterior thalamic nucleus facilitates nociceptive and neuropathic pain.

Journal: Communications biology

Status: data only, 1 dataset cited

[19219] doi:10.1038/s44319-025-00398-5 [paper]

Deficiency of neuronal LGR4 increases energy expenditure and inhibits food intake via hypothalamic leptin signaling.

Journal: EMBO reports

Status: data only

[19220] doi:10.1093/braincomms/fcaf109 [paper, repository]

Unravelling pathological ageing with brain age gap estimation in Alzheimer's disease, diabetes and schizophrenia.

Journal: Brain communications

Authors' code: mfmachado/brain-age-explainability (no license)

Status: code verified, 16 files readable, 2 matches

[19221] doi:10.1097/j.pain.0000000000003571 [paper, repository]

Assessing the predictive value of peak alpha frequency for the sensitivity to pain.

Journal: Pain

Authors' code: crisglav/discover-eeg (CC-BY-4.0), OSF s75q6 (no license)

Status: code verified, 95 files readable, 10 matches

[19222] doi:10.1101/2025.03.09.642162 [paper, repository]

Uncovering synaptic and cellular nanoarchitecture of brain tissue via seamless <i>in situ</i> trimming and milling for cryo-electron tomography

Journal: bioRxiv (preprint)

Authors' code: ccpem (no license)

Status: code verified

[19223] doi:10.1101/2025.03.09.642197 [paper, data]

Psychedelics Align Brain Activity with Context

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[19224] doi:10.1111/epi.18321 [paper]

Optogenetically-induced sustained hypothalamic hyperexcitability impairs memory via thalamic spread.

Journal: Epilepsia

Status: code on request

[19225] doi:10.1186/s11658-025-00709-7 [paper, data]

Deciphering distinct spatial alterations in N-glycan expression profiles in the spinal cord and brain of male rats in a neuropathic pain model.

Journal: Cellular & molecular biology letters

Status: data only, 1 dataset cited

[19226] doi:10.1186/s12915-025-02169-z [paper, repository]

Acute and chronic pesticide exposure trigger fundamentally different molecular responses in bumble bee brains.

Journal: BMC biology

Authors' code: wurmlab/2022–09-Bter-chronic-acute-exposure-alicja (no license)

Status: dead link

[19227] doi:10.1186/s12929-025-01127-9 [paper, repository]

REM sleep quality is associated with balanced tonic activity of the locus coeruleus during wakefulness.

Journal: Journal of biomedical science

Authors' code: gitlab.uliege.be/cyclotronresearchcentre/public/fasst/balanced_lc_activity_and_rem_sleep (no license)

Status: code verified, 1 file readable

[19228] doi:10.1186/s12951-025-03250-z [paper, data]

Mesenchymal stem cell-derived extracellular vesicles alleviate autism by regulating microglial glucose metabolism reprogramming and neuroinflammation through PD-1/PD-L1 interaction.

Journal: Journal of nanobiotechnology

Status: data only, 1 dataset cited

[19229] doi:10.1186/s13690-025-01559-7 [paper, data]

Alleviating the emotional burden on families during organ donation requests in neurologic patients declared with brain death: the role of timing and circumstances of death.

Journal: Archives of public health = Archives belges de sante publique

Status: data only, 1 dataset cited

[19230] doi:10.1371/journal.pbio.3002989 [paper, repository]

Genetic, developmental, and neural changes underlying the evolution of butterfly mate preference.

Journal: PLoS biology

Authors' code: isovic/racon (MIT)

Status: code verified, 14 files readable

[19231] doi:10.1371/journal.pcbi.1012867 [paper, repository]

Mixed recurrent connectivity in primate prefrontal cortex.

Journal: PLoS computational biology

Authors' code: esigalas/MixedConnectivityModels (no license)

Status: code verified, 11 files readable, 8 matches

[19232] doi:10.3389/fncel.2025.1558504 [paper, repository]

Characterize neuronal responses to natural movies in the mouse superior colliculus.

Journal: Frontiers in cellular neuroscience

Authors' code: yatangli/Li_NaturalMovies_2025 (Apache-2.0)

Status: code verified, 4 files readable, 5 matches

[19233] doi:10.3390/brainsci15030295 [paper, data]

Exploring the Correlation Between Sleep Chronotype and the Volumes of Subcortical Structures and Hippocampal Subfields in Young Healthy Population.

Journal: Brain sciences

Status: data only, 1 dataset cited

[19234] doi:10.3390/s25061739 [paper, data]

A Novel Explainable Attention-Based Meta-Learning Framework for Imbalanced Brain Stroke Prediction.

Journal: Sensors (Basel, Switzerland)

Status: data only, 3 datasets cited

[19235] doi:10.7554/elife.90511 [paper, repository]

A neural correlate of individual odor preference in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: eLife

Authors' code: Zenodo 14252278 (CC-BY-4.0)

Status: code verified

Monday, 10 March 2025 (27 papers)

[19236] doi:10.1002/ar.25651 [paper, repository]

But how does it smell? An investigation of olfactory bulb size among living and fossil primates and other euarchontoglirans.

Journal: Anatomical record (Hoboken, N.J. : 2007)

Authors' code: madlenlang/Olfactory-Bulb---AR---2024 (no license)

Status: code verified, 3 files readable, 8 matches

[19237] doi:10.1016/j.celrep.2025.115402 [paper, repository]

ALS molecular subtypes are a combination of cellular and pathological features learned by deep multiomics classifiers.

Journal: Cell reports

Authors' code: mhammell-laboratory/DANCer (GPL-3.0), mhammell-laboratory/CellRangerTE (GPL-3.0), Zenodo 14750680 (GPL-3.0)

Status: code verified, 14 files readable, 1 match

[19238] doi:10.1016/j.dib.2025.111454 [paper, data]

Acquisition Of Balinese Imagined Spelling using Electroencephalogram (BISE) Dataset.

Journal: Data in brief

Status: data only, 3 datasets cited

[19239] doi:10.1016/j.isci.2025.112187 [paper, data]

Frontoparietal and temporal brain alterations post-cardiopulmonary bypass.

Journal: iScience

Status: code on request, 1 dataset cited

[19240] doi:10.1016/j.isci.2025.112192 [paper, data]

Satiety differentially modulates feeding steps in the jellyfish &lt;i&gt;Cladonema&lt;/i&gt;.

Journal: iScience

Status: code on request, 1 dataset cited

[19241] doi:10.1021/jacs.4c15223 [paper, data]

Highly Specific Miniaturized Fluorescent Monoacylglycerol Lipase Probes Enable Translational Research.

Journal: Journal of the American Chemical Society

Status: data only, 3 datasets cited

[19242] doi:10.1038/s41467-025-57488-0 [paper, data]

Berberine-inspired ionizable lipid for self-structure stabilization and brain targeting delivery of nucleic acid therapeutics.

Journal: Nature communications

Status: data only, 1 dataset cited

[19243] doi:10.1038/s41593-025-01902-9 [paper, repository]

Dopamine in the tail of the striatum facilitates avoidance in threat-reward conflicts.

Journal: Nature neuroscience

Authors' code: melissa0v0/TS_Dopamine_Optogenetics (no license)

Status: code verified, 18 files readable, 1 match

[19244] doi:10.1038/s41593-025-01908-3 [paper, repository]

Constructing future behavior in the hippocampal formation through composition and replay.

Journal: Nature neuroscience

Authors' code: jbakermans/state-space-composition (no license)

Status: code verified, 53 files readable, 16 matches

[19245] doi:10.1038/s43587-025-00823-3 [paper, repository]

Subcellular proteomics and iPSC modeling uncover reversible mechanisms of axonal pathology in Alzheimer's disease.

Journal: Nature aging

Authors' code: PaulYJ/Axon-spheroid (no license), ShawnQin/calcium_trace (no license), bewersdorflab/Yifei-Lukas-Collab (no license)

Status: code verified, 28 files readable, 2 matches

[19246] doi:10.1038/s44319-025-00410-y [paper, data]

miR-708-5p is elevated in bipolar patients and can induce mood disorder-associated behavior in mice.

Journal: EMBO reports

Status: data only, 1 dataset cited

[19247] doi:10.1073/pnas.2413449122 [paper, repository]

A unified neural representation model for spatial and conceptual computations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: TatsuyaHaga/DSI_codes (MIT), stanfordnlp/GLoVe (Apache-2.0), attardi/wikiextractor (AGPL-3.0)

Status: code verified, 301 files readable, 5 matches

[19248] doi:10.1073/pnas.2417025122 [paper, repository]

Learning reshapes the hippocampal representation hierarchy.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: hchiossi/hpc-hierarchy (CC0-1.0)

Status: code verified, 16 files readable, 6 matches

[19249] doi:10.1080/20008066.2025.2469978 [paper, data]

Assessing neurocognitive outcomes in PTSD: a multilevel meta-analytical approach.

Journal: European journal of psychotraumatology

Status: data only, 1 dataset cited

[19250] doi:10.1093/braincomms/fcaf104 [paper, repository]

Abnormalities of iron homeostasis and the dopaminergic system in Tourette syndrome revealed by 7T MRI and PET.

Journal: Brain communications

Authors' code: G-K-O/Iron-Dopamine-GTS_scripts (no license)

Status: code verified, 26 files readable, 4 matches

[19251] doi:10.1101/2025.03.09.25323612 [paper, repository]

Systematic Living Evidence for Clinical Trials (SyLECT): a data-driven framework for drug selection in clinical trials in motor neuron disease

Journal: medRxiv (preprint)

Authors' code: OSF bkscj (no license)

Status: empty repository

[19252] doi:10.1162/imag_a_00498 [paper, repository]

Short association fibres form topographic sheets in the human V1-V2 processing stream.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: dchaimow/streamline_positions_from_surfaces (no license)

Status: code verified, 3 files readable

[19253] doi:10.1186/s10020-025-01140-6 [paper, repository]

Imbalance of bladder neurohomeostasis by Myosin 5a aggravates diabetic cystopathy.

Journal: Molecular medicine (Cambridge, Mass.)

Authors' code: zhanghao-njmu.github.io/scp (no license), satijalab.org/seurat (no license)

Status: code verified

[19254] doi:10.1371/journal.pgen.1011615 [paper, repository]

Dynamics of X chromosome hyper-expression and inactivation in male tissues during stick insect development.

Journal: PLoS genetics

Authors' code: JelisavetaDjordjevic/Dosage_compensation (no license)

Status: code verified, 6 files readable

[19255] doi:10.20945/2359-4292-2024-0098 [paper, data]

Comprehensive microarray analysis for the identification of therapeutic targets within HIF-1α signalling networks in diet-induced obesity via hypothalamic inflammation.

Journal: Archives of endocrinology and metabolism

Status: data only, 1 dataset cited

[19256] doi:10.2147/jpr.s506708 [paper]

Attention Deficits in Migraine: Mismatch Negativity and P3a in an Event-Related Potential Study.

Journal: Journal of pain research

Status: code on request

[19257] doi:10.3389/fonc.2025.1508451 [paper, data]

A novel approach for the detection of brain tumor and its classification via end-to-end vision transformer - CNN architecture.

Journal: Frontiers in oncology

Status: data only, 2 datasets cited

[19258] doi:10.3390/ijms26062459 [paper, data]

Repeated Head Exposures to a 5G-3.5 GHz Signal Do Not Alter Behavior but Modify Intracortical Gene Expression in Adult Male Mice.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[19259] doi:10.3758/s13420-025-00669-0 [paper, data]

Examining disgust learning through category conditioning: Evidence from trial-unique presentations and oculomotor avoidance.

Journal: Learning & behavior

Status: data only, 1 dataset cited

[19260] doi:10.3758/s13428-025-02623-4 [paper, data]

The role of individual differences and attitude in willingness to participate in TMS studies.

Journal: Behavior research methods

Status: data only, 1 dataset cited

[19261] doi:10.7554/elife.99548 [paper, data]

Aminergic and peptidergic modulation of insulin-producing cells in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: eLife

Status: data only, 1 dataset cited

[19262] doi:10.7759/cureus.80335 [paper, repository]

Machine Learning Algorithms Introduce Evoked Potentials As Alternative Biomarkers for the Expanded Disability Status Scale Prognosis of Multiple Sclerosis Patients.

Journal: Cureus

Authors' code: kaggle.com/code/desalegngeb (no license)

Status: dead link

Sunday, 9 March 2025 (1 paper)

[19263] doi:10.1007/s10787-025-01661-w [paper, data]

Neuroprotective efficacy of berberine and caffeine against rotenone-induced neuroinflammatory and oxidative disturbances associated with Parkinson's disease via inhibiting α-synuclein aggregation and boosting dopamine release.

Journal: Inflammopharmacology

Status: data only, 1 dataset cited

Saturday, 8 March 2025 (14 papers, 1 on this page)

[19264] doi:10.1016/j.celrep.2025.115391 [paper, repository]

Erasable hippocampal neural signatures predict memory discrimination.

Journal: Cell reports

Authors' code: wmau/FearReinstatement (no license), nkinsky/Eraser (GPL-3.0), nkinsky/ImageCamp (no license), soberlab/Hierarchical-Bootstrap-Paper (GPL-3.0)

Status: code verified, 831 files readable, 15 matches

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