Every paper, by date: page 88

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 88 of 200: 1 March 2025 to 25 February 2025.

Saturday, 1 March 2025 (93 papers, 84 on this page)

[19489] doi:10.1002/brb3.70353 [paper, repository]

Does the Brain Care Which Direction We Read? A Cross-Cultural tDCS Study on Functional Lateralization of Number Processing.

Journal: Brain and behavior

Authors' code: OSF g57av (no license)

Status: code verified, 3 files readable

[19490] doi:10.1002/brb3.70355 [paper, repository]

Transcutaneous Vagus Nerve Stimulation Effects on Flavor-Evoked Electroencephalogram and Eye-Blink Rate.

Journal: Brain and behavior

Authors' code: mariaveldhuizen/TENS-gated-matlab-trigger (no license)

Status: code verified, 2 files readable

[19491] doi:10.1002/brb3.70419 [paper, data]

The Effect of Evaluating Self's Emotions on Frontal Alpha Asymmetry.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[19492] doi:10.1002/brb3.70426 [paper]

ESENA: A Novel Spatiotemporal Event Network Information Approach for Mining Scalp EEG Data.

Journal: Brain and behavior

Status: code on request

[19493] doi:10.1002/brb3.70444 [paper, data]

Transcriptomic Dysregulation in Animal Models of Attention-Deficit Hyperactivity Disorder and Nicotine Dependence Suggests Shared Neural Mechanisms.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[19494] doi:10.1002/cncr.35732 [paper, repository]

Glioma mutational signatures associated with haloalkane exposure are enriched in firefighters.

Journal: Cancer

Authors' code: Cannataro-Lab/glioma_FF_haloalkane (no license)

Status: code verified, 8 files readable, 2 matches

[19495] doi:10.1002/cne.70043 [paper, data]

Environmental Enrichment Increases Brain Volume in Snakes.

Journal: The Journal of comparative neurology

Status: data only, 1 dataset cited

[19496] doi:10.1002/gepi.70001 [paper, repository]

RetroFun-RVS: A Retrospective Family-Based Framework for Rare Variant Analysis Incorporating Functional Annotations.

Journal: Genetic epidemiology

Authors' code: lmangnier/CRHs (no license), abureau/RetroFun-RVS (no license), abureau/Simulation_RetroFun-RVS (no license), abureau/RV_in_SZ_BD_kindreds (no license)

Status: code verified, 109 files readable, 8 matches

[19497] doi:10.1002/hbm.70128 [paper, repository]

Longitudinal Changes of Quantitative Brain Tissue Properties Induced by Balance Training.

Journal: Human brain mapping

Authors' code: arash-n/GBSS (CC-BY-NC-4.0)

Status: code verified, 11 files readable, 3 matches

[19498] doi:10.1002/hbm.70142 [paper, repository]

Denoising Improves Cross-Scanner and Cross-Protocol Test-Retest Reproducibility of Diffusion Tensor and Kurtosis Imaging.

Journal: Human brain mapping

Authors' code: nyu-diffusionmri.github.io/designer-v2 (no license), NYU-DiffusionMRI/DESIGNER-v2 (MIT)

Status: code verified, 51 files readable, 6 matches

[19499] doi:10.1002/hbm.70157 [paper, repository]

Targeted Time-Varying Functional Connectivity.

Journal: Human brain mapping

Authors' code: sonsolesalonsomartinez/TTVFC (no license)

Status: code verified, 2 files readable, 2 matches

[19500] doi:10.1002/hbm.70163 [paper, repository]

The Relations Among Anxiety, Movie-Watching, and in-Scanner Motion.

Journal: Human brain mapping

Authors' code: OSF 6v42r (no license)

Status: code verified, 5 files readable, 1 match

[19501] doi:10.1002/hbm.70179 [paper, data]

Evidence for Transient, Uncoupled Power and Functional Connectivity Dynamics.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[19502] doi:10.1002/hbm.70181 [paper, repository]

Music-Evoked Nostalgia Activates Default Mode and Reward Networks Across the Lifespan.

Journal: Human brain mapping

Authors' code: OSF jw4bz (no license), hennessysarah/SoundsLikeThis-Qualtrics-backend (no license)

Status: code verified, 2 files readable, 1 match

[19503] doi:10.1002/hbm.70183 [paper, repository]

Cerebral Blood Flow Changes and Their Spatial Correlations With GABAa and Dopamine-D1 Receptor Explaining Individual Differences in Chronic Insomnia and the Therapeutic Effects of Acupuncture.

Journal: Human brain mapping

Authors' code: xiaoyi-142/CBF_Neurotransmitter (GPL-3.0)

Status: code verified, 320 files readable, 9 matches

[19504] doi:10.1002/hbm.70185 [paper, repository]

Smooth Normative Brain Mapping of Three-Dimensional Morphometry Imaging Data Using Skew-Normal Regression.

Journal: Human brain mapping

Authors' code: marcopalma3/NormMap3D (no license)

Status: code verified, 15 files readable

[19505] doi:10.1002/hipo.70008 [paper, repository]

Phase Precession Relative to Turning Angle in Theta-Modulated Head Direction Cells.

Journal: Hippocampus

Authors' code: ZilongJi/HDPhasePrecession (no license)

Status: code verified, 29 files readable, 11 matches

[19506] doi:10.1002/jev2.70059 [paper, data]

Gut Microbiota-Derived Extracellular Vesicles Influence Alcohol Intake Preferences in Rats.

Journal: Journal of extracellular vesicles

Status: data only, 1 dataset cited

[19507] doi:10.1002/npr2.70001 [paper, data]

Gene Expression Signatures of Immaturity, Decreased pH, and Neural Hyperexcitation in the Hippocampus of Alzheimer's Disease Model Mice.

Journal: Neuropsychopharmacology reports

Status: data only, 1 dataset cited

[19508] doi:10.1007/s10334-025-01229-3 [paper, repository]

Comparing repeatability metrics for quantitative susceptibility mapping in the head and neck.

Journal: Magma (New York, N.Y.)

Authors' code: Cherukara/HNRepeatability (GPL-3.0)

Status: code verified, 24 files readable, 17 matches

[19509] doi:10.1016/j.isci.2025.112132 [paper, data]

Shared spectral fingerprints of temporal memory precision and representation of the temporal structure of complex narratives.

Journal: iScience

Status: code on request, 3 datasets cited

[19510] doi:10.1016/j.xcrm.2025.102022 [paper, repository]

High-dimensional analysis of injured patients reveals distinct circulating proteomic profiles in plasma vs. whole blood resuscitation.

Journal: Cell reports. Medicine

Authors' code: moheimanih/SWAT_proteomics_study (MIT)

Status: code verified, 9 files readable, 13 matches

[19511] doi:10.1016/j.ynirp.2025.100246 [paper, repository]

Unsupervised subtyping of motor dysfunction of Parkinson's disease and its structural brain imaging correlates.

Journal: Neuroimage. Reports

Authors' code: Frenda1005/PPMI (no license)

Status: code verified, 1 file readable, 5 matches

[19512] doi:10.1038/s41540-025-00500-6 [paper, repository]

Loss formulations for assumption-free neural inference of SDE coefficient functions.

Journal: NPJ systems biology and applications

Authors' code: Zenodo 1228899 (CC-BY-SA-4.0), marc-vaisband/LieTrotterSDE (MIT)

Status: code verified, 13 files readable, 9 matches

[19513] doi:10.1038/s41598-025-92022-8 [paper, repository]

[¹⁸F]FDG-PET and [¹⁸F]MPPF-PET are brain biomarkers for the creatine transporter Slc6a8 loss of function mutation.

Journal: Scientific reports

Authors' code: sourceforge.net/amide (no license)

Status: code verified

[19514] doi:10.1038/s41598-025-92103-8 [paper, data]

Unraveling the role of neuregulin-mediated astrocytes-OPCs axis in the pathogenesis of age-related macular degeneration and Parkinson's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[19515] doi:10.1038/s41598-025-92105-6 [paper, repository]

Pre-trained convolutional neural networks identify Parkinson's disease from spectrogram images of voice samples.

Journal: Scientific reports

Authors' code: uams-tri/PD-Voice (Apache-2.0)

Status: code verified, 8 files readable, 5 matches

[19516] doi:10.1038/s42003-025-07731-7 [paper, repository]

Generative language reconstruction from brain recordings.

Journal: Communications biology

Authors' code: huggingface.co/meta-llama/llama-2-7b (no license), Zenodo 14838723 (CC-BY-4.0), yeziyi1998/brain-language-generation (CC-BY-NC-4.0)

Status: code verified, 70 files readable, 8 matches

[19517] doi:10.1038/s42003-025-07745-1 [paper, repository]

Early life brain network connectivity antecedents of executive function in children born preterm.

Journal: Communications biology

Authors' code: abioty/Neuro_Dev_EF_CINEPS (no license)

Status: code verified, 4 files readable, 3 matches

[19518] doi:10.1038/s42003-025-07788-4 [paper, repository]

Resilience and vulnerability of neural speech tracking after hearing restoration.

Journal: Communications biology

Authors' code: egaudrain/vocoder (GPL-3.0)

Status: code verified, 31 files readable

[19519] doi:10.1038/s43856-025-00767-0 [paper, repository]

The radiogenomic and spatiogenomic landscapes of glioblastoma and their relationship to oncogenic drivers.

Journal: Communications medicine

Authors' code: Zenodo 14582800 (CC-BY-4.0)

Status: code verified, 5 files readable

[19520] doi:10.1093/bib/bbaf088 [paper, repository]

A novel integrative multimodal classifier to enhance the diagnosis of Parkinson's disease.

Journal: Briefings in bioinformatics

Authors' code: tom-209/PD_classification (MIT)

Status: code verified, 8 files readable, 6 matches

[19521] doi:10.1093/bib/bbaf089 [paper, repository]

Inferring gene regulatory networks from time-series scRNA-seq data via GRANGER causal recurrent autoencoders.

Journal: Briefings in bioinformatics

Authors' code: murali-group/beeline (GPL-3.0), shaoqiangzhang/GRANGER (GPL-3.0)

Status: code verified, 98 files readable, 4 matches

[19522] doi:10.1093/bib/bbaf146 [paper, repository]

CoPPIs algorithm: a tool to unravel protein cooperative strategies in pathophysiological conditions.

Journal: Briefings in bioinformatics

Authors' code: lomi95/CoPPIs (no license)

Status: code verified, 30 files readable

[19523] doi:10.1093/bioinformatics/btaf093 [paper, repository]

ORCO: Ollivier-Ricci Curvature-Omics-an unsupervised method for analyzing robustness in biological systems.

Journal: Bioinformatics (Oxford, England)

Authors' code: aksimhal/ORC-Omics (GPL-3.0)

Status: code verified, 9 files readable, 1 match

[19524] doi:10.1093/bioinformatics/btaf109 [paper, repository]

A framework for analyzing EEG data using high-dimensional tests.

Journal: Bioinformatics (Oxford, England)

Authors' code: yahu911/Framework_EEG (no license)

Status: code verified, 8 files readable

[19525] doi:10.1093/brain/awae295 [paper, repository]

Associations between neuromelanin depletion and cortical rhythmic activity in Parkinson's disease.

Journal: Brain : a journal of neurology

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0)

Status: code verified, 50 files readable

[19526] doi:10.1093/brain/awae339 [paper, repository]

Human longevity and Alzheimer's disease variants act via microglia and oligodendrocyte gene networks.

Journal: Brain : a journal of neurology

Authors' code: AndyCGraham/AgeingCoExpNets (no license)

Status: code verified, 13 files readable, 6 matches

[19527] doi:10.1093/brain/awae411 [paper, repository]

Loss of glymphatic homeostasis in heart failure.

Journal: Brain : a journal of neurology

Authors' code: Moby1971 (no license), Zenodo 11475856 (CC-BY-4.0), kswanberg/rcbflow (BSD-2-Clause)

Status: code verified, 14 files readable, 2 matches

[19528] doi:10.1093/cercor/bhaf035 [paper, data]

Hubs and interaction: the brain's meta-loop.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[19529] doi:10.1093/cercor/bhaf059 [paper]

Characterizing positive and negative quantitative susceptibility values in the cortex following mild traumatic brain injury: a depth- and curvature-based study.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[19530] doi:10.1093/cercor/bhaf061 [paper, data]

Strategic mindset facilitates social feedback processing and self-concept adjustment.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[19531] doi:10.1093/function/zqaf005 [paper, data]

Mapping Organism-wide Single Cell mRNA Expression Linked to Extracellular Vesicle Biogenesis, Secretion, and Cargo.

Journal: Function (Oxford, England)

Status: data only, 2 datasets cited

[19532] doi:10.1093/function/zqaf014 [paper, data]

High-Salt Diet Increases Suprachiasmatic Neuronal Excitability Through Endothelin Receptor Type B Signaling.

Journal: Function (Oxford, England)

Status: data only, 1 dataset cited

[19533] doi:10.1093/gbe/evaf011 [paper, repository]

Reconstruction of Segmental Duplication Rates and Associated Genomic Features by Network Analysis.

Journal: Genome biology and evolution

Authors' code: abdeldar/SD_network (no license)

Status: code verified, 15 files readable, 17 matches

[19534] doi:10.1093/genetics/iyae219 [paper, repository]

A Drosophila model of mucopolysaccharidosis IIIB.

Journal: Genetics

Authors' code: ypan23-1876660/DAM (GPL-3.0), bsimkha/Dmel_MPSIIIB_model (no license)

Status: code verified, 23 files readable, 8 matches

[19535] doi:10.1093/neuonc/noae211 [paper, data]

Synergistic combination of perphenazine and temozolomide suppresses patient-derived glioblastoma tumorspheres.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[19536] doi:10.1093/scan/nsaf013 [paper, data]

Caregiving is associated with lower brain age in humans.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[19537] doi:10.1093/scan/nsaf018 [paper]

Connectome-wide brain signature during fast-food advertisement exposure predicts BMI at 2 years.

Journal: Social cognitive and affective neuroscience

Status: code on request

[19538] doi:10.1093/sleep/zsae262 [paper, repository]

Sleep is necessary for experience-dependent sequence plasticity in mouse primary visual cortex.

Journal: Sleep

Authors' code: jeffgavornik/VEPStimulusSuite (no license), jeffgavornik/VEPAnalysisSuite (MIT)

Status: code verified, 606 files readable

[19539] doi:10.1093/sleep/zsae299 [paper, repository]

40 Hz visual stimulation during sleep evokes neuronal gamma activity in NREM and REM stages.

Journal: Sleep

Authors' code: tscnlab/Gamma-Sleep (no license)

Status: code verified, 12 files readable, 10 matches

[19540] doi:10.1097/js9.0000000000002228 [paper, data]

Influence of lung function on macro- and micro-structural brain changes in mid- and late-life.

Journal: International journal of surgery (London, England)

Status: data only, 1 dataset cited

[19541] doi:10.1097/md.0000000000041781 [paper, data]

A study on the difference between functional connectivity in elbow flexion and extension according to object weight.

Journal: Medicine

Status: data only, 1 dataset cited

[19542] doi:10.1111/adb.70029 [paper, repository]

Cathodal Transcranial Direct Current Stimulation Does Not Change Implicit Associations Against Alcohol in Alcohol Use Disorder: A Preregistered Clinical Trial.

Journal: Addiction biology

Authors' code: OSF wd6em (no license)

Status: empty repository

[19543] doi:10.1111/cns.70319 [paper, repository]

Causal Association Between Major Depressive Disorder and Cortical Structure: A Bidirectional Mendelian Randomization Study and Mediation Analysis.

Journal: CNS neuroscience & therapeutics

Authors' code: supp:PMC11890974/CNS-31-e70319-s001.zip (no license)

Status: code verified, 4 files readable, 2 matches

[19544] doi:10.1111/cns.70328 [paper, data]

Long-Term Minocycline Treatment Exhibits Enhanced Therapeutic Effects on Ischemic Stroke by Suppressing Inflammatory Phenotype of Microglia Through the EMB/MCT4/STING Pathway.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[19545] doi:10.1111/cns.70354 [paper]

TSG-6 Protects Against Cerebral Ischemia-Reperfusion Injury via Upregulating Hsp70-1B in Astrocytes.

Journal: CNS neuroscience & therapeutics

Status: data only

[19546] doi:10.1111/cns.70359 [paper, repository]

Gradients of Nigrostriatal Iron Deposition in Healthy Aging and Synucleinopathies.

Journal: CNS neuroscience & therapeutics

Authors' code: MezerLab/mrGrad (no license)

Status: code verified, 36 files readable

[19547] doi:10.1111/desc.13609 [paper, data]

Lateralization of Neural Speech Discrimination at Birth Is a Predictor for Later Language Development.

Journal: Developmental science

Status: data only, 1 dataset cited

[19548] doi:10.1111/ejn.70031 [paper]

Aging Impacts Basic Auditory and Timing Processes.

Journal: The European journal of neuroscience

Status: code on request

[19549] doi:10.1111/ejn.70032 [paper, data]

Neurophysiological Treatment Effects of Mesdopetam, Pimavanserin and Amantadine in a Rodent Model of Levodopa-Induced Dyskinesia.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[19550] doi:10.1111/ejn.70033 [paper, repository]

Forestwalk: A Machine Learning Workflow Brings New Insights Into Posture and Balance in Rodent Beam Walking.

Journal: The European journal of neuroscience

Authors' code: Roche/neuro-forestwalk (Apache-2.0)

Status: code verified, 13 files readable, 5 matches

[19551] doi:10.1111/ejn.70036 [paper]

Olfactory Receptor Responses to Pure Odorants in Drosophila melanogaster.

Journal: The European journal of neuroscience

Status: code on request

[19552] doi:10.1111/ejn.70042 [paper, data]

μ-Transcranial Alternating Current Stimulation Induces Phasic Entrainment and Plastic Facilitation of Corticospinal Excitability.

Journal: The European journal of neuroscience

Status: code on request, 1 dataset cited

[19553] doi:10.1111/ejn.70047 [paper, data]

Discrete Repetition Effects for Visual Words Compared to Faces and Animals, but No Modulation by Expectation: An Event-Related Potential Study.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[19554] doi:10.1111/ejn.70050 [paper, data]

The Role of Complexity Theory in Understanding Brain's Neuron-Glia Interactions.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[19555] doi:10.1111/ejn.70051 [paper, repository]

Exploring Changes in Primary Motor Cortex Organization and Associations With Changes in Motor-Sensory Tests Over Time in Relation to Low Back Pain Recovery. A Longitudinal Study.

Journal: The European journal of neuroscience

Authors' code: marlow17/surfaceanalysis (GPL-3.0)

Status: code verified, 20 files readable

[19556] doi:10.1111/ene.70094 [paper, data]

Free Water as a Marker of Early Small Vessel Disease in Healthy Aging.

Journal: European journal of neurology

Status: data only, 1 dataset cited

[19557] doi:10.1111/ene.70098 [paper, repository]

Genetic Etiology Influences the Low-Frequency Components of Globus Pallidus Internus Electrophysiology in Dystonia.

Journal: European journal of neurology

Authors' code: ahmetofficial/Genetic-DYT-GPi-Spectral-Activity (no license)

Status: code verified, 20 files readable, 6 matches

[19558] doi:10.1111/jnc.70025 [paper, data]

Therapeutic Treatment With OLX-07010 Inhibited Tau Aggregation and Ameliorated Motor Deficits in an Aged Mouse Model of Tauopathy.

Journal: Journal of neurochemistry

Status: data only, 1 dataset cited

[19559] doi:10.1111/jpi.70040 [paper, repository]

Sex-Specific Methylomic and Transcriptomic Responses of the Avian Pineal Gland to Unpredictable Illumination Patterns.

Journal: Journal of pineal research

Authors' code: gpertea/stringtie (MIT), fpertille/PinealGlandChicken (no license)

Status: code verified, 390 files readable, 6 matches

[19560] doi:10.1111/psyp.70030 [paper, repository]

Dissociating Affective Salience and Valence in (Very) Long-Latency ERPs.

Journal: Psychophysiology

Authors' code: dataverse.nl/dataverse/cognitive_neuropsychology (no license)

Status: code verified

[19561] doi:10.1111/psyp.70032 [paper, repository]

Spatio-Temporal Decoding of the Navon Task Challenges Rigid Hemispheric Asymmetries in Global-Local Processing.

Journal: Psychophysiology

Authors' code: OSF fs8t5 (no license)

Status: code verified, 5 files readable, 1 match

[19562] doi:10.1111/psyp.70033 [paper, data]

Estimating Chronological Age From the Electrical Activity of the Brain: How EEG-Age Can Be Used as a Marker of General Brain Functioning.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[19563] doi:10.1111/psyp.70035 [paper, repository]

The Interplay of Spontaneous Pupil-Size Fluctuations and EEG Power in Near-Threshold Detection.

Journal: Psychophysiology

Authors' code: OSF 9p563 (no license)

Status: empty repository

[19564] doi:10.1111/psyp.70047 [paper, repository]

Presaccadic Attention Shifts Up- and Downwards: Evidence From the Pupil Light Response.

Journal: Psychophysiology

Authors' code: OSF ckp3r (no license)

Status: code verified, 2 files readable

[19565] doi:10.1117/1.jmi.12.2.024504 [paper, repository]

Prediction of brain metastasis progression after stereotactic radiosurgery: sensitivity to changing the definition of progression.

Journal: Journal of medical imaging (Bellingham, Wash.)

Authors' code: RobertPolicelli/PredictingBrainMetastasesProgression-SensitivityToChangingTheProgressionDefinition (no license)

Status: code verified, 782 files readable, 8 matches

[19566] doi:10.1167/iovs.66.3.49 [paper, repository]

Optic Nerve Crush Does Not Induce Retinal Ganglion Cell Loss in the Contralateral Eye.

Journal: Investigative ophthalmology & visual science

Authors' code: siegert-lab/RGC-Quant (MIT)

Status: code verified, 11 files readable

[19567] doi:10.1167/jov.25.3.1 [paper, repository]

Does surface completion fail to support uncrowding?

Journal: Journal of vision

Authors' code: OSF q283y (no license)

Status: code verified, 1 file readable

[19568] doi:10.1186/s13287-025-04217-5 [paper, data]

Generation of phenotypically stable and functionally mature human bone marrow MSCs derived Schwann cells via the induction of human iPSCs-derived sensory neurons.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[19569] doi:10.1210/clinem/dgae338 [paper, repository]

Controlled Antenatal Thyroid Screening Study III: Effects of Gestational Thyroid Status on Adolescent Brain Morphology.

Journal: The Journal of clinical endocrinology and metabolism

Authors' code: OSF fq4xk (no license)

Status: code verified, 4 files readable, 5 matches

[19570] doi:10.14814/phy2.70237 [paper, repository]

Corticomuscular and intermuscular coherence during evidence accumulation in sensorimotor decision-making.

Journal: Physiological reports

Authors' code: data.ru.nl/collections/di (no license)

Status: code verified

[19571] doi:10.5114/ppn.2025.149873 [paper, data]

Recent insights into depression from transcriptomic analysis.

Journal: Postepy psychiatrii neurologii

Status: data only, 1 dataset cited

[19572] doi: [paper]

Berberine Exerts Neuroprotective Effects in Alzheimer's Disease by Switching Microglia M1/M2 Polarization Through PI3K-AKT Signaling.

Journal: Physiological research

Status: data only

Friday, 28 February 2025 (40 papers)

[19573] doi:10.1002/ccs3.70006 [paper, repository]

Evaluation of altered cell-cell communication between glia and neurons in the hippocampus of 3xTg-AD mice at two time points.

Journal: Journal of cell communication and signaling

Authors' code: Zenodo 11040825 (MIT), lasseignelab/230418_TS_AgingCCC (MIT)

Status: code verified, 33 files readable, 12 matches

[19574] doi:10.1007/s10548-025-01107-0 [paper, repository]

Does the Cortical-Depth Dependence of the Hemodynamic Response Function Differ Between Age Groups?

Journal: Brain topography

Authors' code: gjheij/lineexps (MIT)

Status: code verified, 71 files readable

[19575] doi:10.1007/s12311-025-01809-y [paper, repository]

A Gene-Expression Based Comparison of Murine and Human Inhibitory Interneurons in the Cerebellar Cortex and Nuclei.

Journal: Cerebellum (London, England)

Authors' code: vertesy/Seurat.utils (GPL-3.0), Alexis-Varin/RightOmicsTools (GPL-3.0)

Status: code verified, 62 files readable, 2 matches

[19576] doi:10.1016/j.brs.2025.02.020 [paper, repository]

Decoding auditory working memory content from EEG responses to auditory-cortical TMS.

Journal: Brain stimulation

Authors' code: dataverse.harvard.edu/dataverse/isiluluc (no license)

Status: code found, still to be checked

[19577] doi:10.1016/j.celrep.2025.115356 [paper]

Temporal dynamics of immune cell transcriptomics in brain metastasis progression influenced by gut microbiome dysbiosis.

Journal: Cell reports

Status: code on request

[19578] doi:10.1016/j.dcn.2025.101538 [paper, repository]

Air pollution and cortical myelin T1w/T2w ratio estimates in school-age children from the ABCD and NeuroSmog studies.

Journal: Developmental cognitive neuroscience

Authors' code: collection3165.readthedocs.io (no license)

Status: dead link

[19579] doi:10.1016/j.isci.2025.112124 [paper, repository]

Peri-operative anti-inflammatory drug use and seizure recurrence after resective epilepsy surgery: Target trials emulation.

Journal: iScience

Authors' code: IBM/causallib (Apache-2.0)

Status: code verified, 146 files readable, 3 matches

[19580] doi:10.1016/j.isci.2025.112128 [paper, repository]

Single-nucleus profiling decoding the subcortical visual pathway evolution of vertebrates.

Journal: iScience

Authors' code: Coleliao/visual_evo (no license)

Status: code verified, 9 files readable, 12 matches

[19581] doi:10.1016/j.tjpad.2025.100097 [paper, data]

Integrative single-cell RNA sequencing and mendelian randomization analysis reveal the potential role of synaptic vesicle cycling-related genes in Alzheimer's disease.

Journal: The journal of prevention of Alzheimer's disease

Status: data only, 1 dataset cited

[19582] doi:10.1016/j.xcrm.2025.101986 [paper, data]

Outer radial glia promotes white matter regeneration after neonatal brain injury.

Journal: Cell reports. Medicine

Status: code on request, 1 dataset cited

[19583] doi:10.1038/s41380-025-02938-w [paper, repository]

Investigating dopaminergic abnormalities in schizophrenia and first-episode psychosis with normative modelling and multisite molecular neuroimaging.

Journal: Molecular psychiatry

Authors' code: Zenodo 6364963 (other-open), alegiac95/imaging-transcriptomics (AGPL-3.0)

Status: code verified, 42 files readable

[19584] doi:10.1038/s41467-025-57289-5 [paper, repository]

Pupil size reveals arousal level fluctuations in human sleep.

Journal: Nature communications

Authors' code: Zenodo 14755103 (MIT), manucarro/pupilsizeduringsleep (MIT)

Status: code verified, 20 files readable, 2 matches

[19585] doi:10.1038/s41467-025-57363-y [paper, data]

Neuron-specific isoform of PGC-1α regulates neuronal metabolism and brain aging.

Journal: Nature communications

Status: data only, 1 dataset cited

[19586] doi:10.1038/s41591-024-03435-3 [paper, repository]

Rapid brain tumor classification from sparse epigenomic data.

Journal: Nature medicine

Authors' code: marcpaga/sturgeon (other), Zenodo 13236097 (CC-BY-NC-4.0), marasteiger/MethyLYZR (other), Zenodo 13324498 (CC-BY-NC-4.0)

Status: code verified, 34 files readable, 16 matches

[19587] doi:10.1038/s41598-025-91391-4 [paper, data]

AgRP neurons shape the sperm small RNA payload.

Journal: Scientific reports

Status: data only, 1 dataset cited

[19588] doi:10.1038/s42003-025-07729-1 [paper, data]

Repetitive concussions promote microglia-mediated engulfment of presynaptic excitatory input associated with cognitive dysfunction.

Journal: Communications biology

Status: data only, 1 dataset cited

[19589] doi:10.1038/s44321-025-00206-6 [paper]

Deubiquitination of RIPK3 by OTUB2 potentiates neuronal necroptosis after ischemic stroke.

Journal: EMBO molecular medicine

Status: data only

[19590] doi:10.1080/14796694.2025.2470604 [paper, data]

TUXEDO-4: phase II study of trastuzumab-deruxtecan in HER2-low breast cancer with new or progressing brain metastases.

Journal: Future oncology (London, England)

Status: data only, 1 dataset cited

[19591] doi:10.1080/22221751.2025.2465327 [paper, data]

An immunocompetent mouse model revealed that congenital Zika virus infection disrupted hippocampal function by activating autophagy.

Journal: Emerging microbes & infections

Status: data only, 1 dataset cited

[19592] doi:10.1093/nc/niaf002 [paper]

Training the embodied self in its impermanence: meditators evidence neurophysiological markers of death acceptance.

Journal: Neuroscience of consciousness

Status: code on request

[19593] doi:10.1093/nc/niaf004 [paper, repository]

The complexity of human subjective experience during binocular rivalry.

Journal: Neuroscience of consciousness

Authors' code: OSF n6dqf (no license)

Status: code verified, 160 files readable, 11 matches

[19594] doi:10.1111/cpr.70015 [paper, data]

Ezh2 Regulates Early Astrocyte Morphogenesis and Influences the Coverage of Astrocytic Endfeet on the Vasculature.

Journal: Cell proliferation

Status: data only, 1 dataset cited

[19595] doi:10.1113/jp287665 [paper, data]

The interplay between Hebbian and homeostatic plasticity in the adult visual cortex.

Journal: The Journal of physiology

Status: data only, 2 datasets cited

[19596] doi:10.1126/sciadv.adr2082 [paper, repository]

HfZrO-based synaptic resistor circuit for a Super-Turing intelligent system.

Journal: Science advances

Authors' code: Zenodo 14291100 (CC-BY-4.0)

Status: code verified, 2 files readable

[19597] doi:10.1126/sciadv.ads1568 [paper, repository]

Cystic fibrosis alters the structure of the olfactory epithelium and the expression of olfactory receptors affecting odor perception.

Journal: Science advances

Authors' code: ymbouamboua/Human_Pig_Olfactory_CF (GPL-3.0)

Status: code verified, 7 files readable, 6 matches

[19598] doi:10.1126/sciadv.ads6967 [paper, repository]

Benchmarking macaque brain gene expression for horizontal and vertical translation.

Journal: Science advances

Authors' code: Zenodo 14261836 (CC-BY-4.0), netneurolab/luppi-genes-receptors-macaque (BSD-3-Clause)

Status: code verified, 28 files readable, 15 matches

[19599] doi:10.1186/s10020-025-01134-4 [paper, data]

Characterization and chemoproteomic profiling of protein O-GlcNAcylation in SOD1-G93A mouse model.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 2 datasets cited

[19600] doi:10.1186/s12967-025-06233-8 [paper, data]

Neuronal guanine nucleotide exchange factor promotes the axonal growth and cancer cell proliferation via Ephrin-A3/EphA2 axis in lung adenocarcinoma.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[19601] doi:10.1186/s13024-025-00814-3 [paper, data]

Preclinical studies and transcriptome analysis in a model of Parkinson's disease with dopaminergic ZNF746 expression.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[19602] doi:10.1186/s13287-025-04250-4 [paper]

Mesenchymal stem cells overexpressing neuropeptide S promote the recovery of rats with spinal cord injury by activating the PI3K/AKT/GSK3β signaling pathway.

Journal: Stem cell research & therapy

Status: data only

[19603] doi:10.17691/stm2025.17.1.03 [paper, repository]

Study of Brain Cells in Neurodegenerative Diseases: Raman Microspectroscopy and Scanning Ion-Conductance Microscopy.

Journal: Sovremennye tekhnologii v meditsine

Authors' code: abrazhe/pyraman (no license)

Status: code verified, 10 files readable

[19604] doi:10.3389/fneur.2025.1533558 [paper, data]

Unveiling BID: a key biomarker in apoptosis post-intracerebral hemorrhage.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[19605] doi:10.3389/fnins.2025.1527148 [paper]

Decreased scene-selective activity within the posterior intraparietal cortex in amblyopic adults.

Journal: Frontiers in neuroscience

Status: code on request

[19606] doi:10.3389/fnins.2025.1545004 [paper, data]

Mutation in <i>Wdr45</i> leads to early motor dysfunction and widespread aberrant axon terminals in a beta-propeller protein associated neurodegeneration (BPAN) patient-inspired mouse model.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[19607] doi:10.3389/fonc.2025.1531465 [paper, data]

The aggrephagy-related gene TUBA1B influences clinical outcomes in glioma patients by regulating the cell cycle.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[19608] doi:10.3390/brainsci15030263 [paper, data]

Understanding Altered Dynamics in Cocaine Use Disorder Through State Transitions Mediated by Artificial Perturbations.

Journal: Brain sciences

Status: data only, 2 datasets cited

[19609] doi:10.3390/v17030361 [paper, data]

Chronic, Low-Dose Methamphetamine Reveals Sexual Dimorphism of Memory Performance, Histopathology, and Gene Expression Affected by HIV-1 Tat Protein in a Transgenic Model of NeuroHIV.

Journal: Viruses

Status: data only, 1 dataset cited

[19610] doi:10.7554/elife.94917 [paper, data]

Bridging the 3D geometrical organisation of white matter pathways across anatomical length scales and species.

Journal: eLife

Status: code on request, 1 dataset cited

[19611] doi:10.7554/elife.97894 [paper, repository]

Adaptive chunking improves effective working memory capacity in a prefrontal cortex and basal ganglia circuit.

Journal: eLife

Authors' code: emer/emergent (BSD-3-Clause), AneriSoni/workingmemory (MIT)

Status: code verified, 162 files readable

[19612] doi:10.7554/elife.98351 [paper, repository]

An image-computable model of speeded decision-making.

Journal: eLife

Authors' code: pauljaffe/vam (MIT)

Status: code verified, 21 files readable, 17 matches

Thursday, 27 February 2025 (35 papers)

[19613] doi:10.1002/advs.202406224 [paper, repository]

Sensory Encoding Alternates With Hippocampal Ripples across Cycles of Forebrain Spiking Cascades.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: psu-mcnl/Neural-Arousal (no license)

Status: code verified, 10 files readable, 7 matches

[19614] doi:10.1002/advs.202416239 [paper, repository]

Multi-Shank 1024 Channels Active SiNAPS Probe for Large Multi-Regional Topographical Electrophysiological Mapping of Neural Dynamics.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: gin.g-node.org/antsiro/sinaps_8shank (CC0-1.0), MouseLand/Kilosort (GPL-3.0), phy.readthedocs.io (no license), buzsakilab/buzcode (GPL-3.0)

Status: code verified, 2,058 files readable, 15 matches

[19615] doi:10.1002/advs.202416453 [paper, repository]

Host Plasma Microenvironment in Immunometabolically Impaired HIV Infection Leads to Dysregulated Monocyte Function and Synaptic Transmission Ex Vivo.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: neogilab/Immunometabolism_HIV (Apache-2.0)

Status: code verified, 117 files readable, 12 matches

[19616] doi:10.1007/s10571-025-01536-2 [paper, repository]

Single-Cell Analysis of Sex and Gender Differences in the Human Brain During Development and Disease.

Journal: Cellular and molecular neurobiology

Authors' code: aurazelco/SGDifferencesHumanBrain (MIT), aurazelco/SGHumanBrainApp (MIT)

Status: code verified, 91 files readable, 13 matches

[19617] doi:10.1016/j.fmre.2025.01.017 [paper, repository]

Network structure governs Drosophila brain functionality.

Journal: Fundamental research

Authors' code: XiaoyuZhang001/Drosophila (no license)

Status: code verified, 7 files readable

[19618] doi:10.1016/j.isci.2025.112115 [paper, data]

Spatiotemporal proteomic and transcriptomic landscape of DAT+ dopaminergic neurons development and function.

Journal: iScience

Status: code on request, 1 dataset cited

[19619] doi:10.1016/j.redox.2025.103550 [paper, data]

FOXO3a-BAP1 axis regulates neuronal ferroptosis in early brain injury after subarachnoid hemorrhage.

Journal: Redox biology

Status: data only, 1 dataset cited

[19620] doi:10.1016/j.stemcr.2025.102421 [paper]

Autism- and intellectual disability-associated MYT1L mutation alters human cortical interneuron differentiation, maturation, and physiology.

Journal: Stem cell reports

Status: data only

[19621] doi:10.1016/j.xpro.2025.103659 [paper, repository]

Protocol for detecting and analyzing non-oscillatory traveling waves from high-spatiotemporal-resolution human electrophysiological recordings.

Journal: STAR protocols

Authors' code: elliothsmith/IEDs (GPL-3.0), circstat/circstat-matlab (no license), Zenodo 14889974 (CC-BY-4.0)

Status: code verified, 67 files readable, 15 matches

[19622] doi:10.1038/s41398-025-03290-x [paper, repository]

Neurofind: using deep learning to make individualised inferences in brain-based disorders.

Journal: Translational psychiatry

Authors' code: MLMH-Lab/neurofind_ai (MIT)

Status: code verified, 13 files readable, 7 matches

[19623] doi:10.1038/s41467-024-55752-3 [paper, repository]

Magnetically reshapable 3D multi-electrode arrays of liquid metals for electrophysiological analysis of brain organoids.

Journal: Nature communications

Authors' code: codeocean:7867348 (no license)

Status: code found, still to be checked

[19624] doi:10.1038/s41467-025-57278-8 [paper, data]

Serum-tolerant polymeric complex for stem-cell transfection and neural differentiation.

Journal: Nature communications

Status: data only, 1 dataset cited

[19625] doi:10.1038/s41467-025-57328-1 [paper, repository]

Advancing nonadiabatic molecular dynamics simulations in solids with E(3) equivariant deep neural hamiltonians.

Journal: Nature communications

Authors' code: QuantumLab-ZY/HamGNN (GPL-3.0), zhang-changwei/Hefei-NAMD-DEV (MIT), figshare 26629405 (CC-BY-4.0), Zenodo 14671945 (GPL-3.0), Zenodo 14671441 (MIT)

Status: code verified, 680 files readable, 10 matches

[19626] doi:10.1038/s41467-025-57341-4 [paper, data]

The p3 peptides (Aβ<sub>17-40/42</sub>) rapidly form amyloid fibrils that cross-seed with full-length Aβ.

Journal: Nature communications

Status: data only, 2 datasets cited

[19627] doi:10.1038/s41591-025-03512-1 [paper, repository]

Neoadjuvant triplet immune checkpoint blockade in newly diagnosed glioblastoma.

Journal: Nature medicine

Authors' code: umccr/cwl-ica (MIT)

Status: code verified, 120 files readable, 2 matches

[19628] doi:10.1038/s41593-025-01877-7 [paper, data]

Nasal anti-CD3 monoclonal antibody ameliorates traumatic brain injury, enhances microglial phagocytosis and reduces neuroinflammation via IL-10-dependent T<sub>reg</sub>-microglia crosstalk.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[19629] doi:10.1038/s41598-024-83602-1 [paper, repository]

Heterogeneous model for superdiffusive movement of dense core vesicles in C. elegans.

Journal: Scientific reports

Authors' code: umkich/organelle_transport_analysis (MIT)

Status: code verified, 8 files readable

[19630] doi:10.1038/s41598-025-90504-3 [paper, repository]

Integration of Euclidean and path distances in hippocampal maps.

Journal: Scientific reports

Authors' code: OSF 78uph (no license)

Status: empty repository

[19631] doi:10.1038/s41598-025-90881-9 [paper, repository]

Improving ALS detection and cognitive impairment stratification with attention-enhanced deep learning models.

Journal: Scientific reports

Authors' code: yq-xiamltech/als-classification (no license)

Status: code verified, 19 files readable, 15 matches

[19632] doi:10.1073/pnas.2411811122 [paper, data]

Disruption of G3BP1 granules promotes mammalian CNS and PNS axon regeneration.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[19633] doi:10.1093/braincomms/fcaf081 [paper, repository]

Longitudinal alterations in brain networks and thalamocortical connectivity in paediatric focal epilepsy: a structural connectomics pilot study.

Journal: Brain communications

Authors' code: aswinchari/LongitudinalNetworks (no license)

Status: code verified, 15 files readable, 6 matches

[19634] doi:10.1162/imag_a_00491 [paper]

The macaque ventral intraparietal functional connectivity patterns reveal an anterio-posterior specialization mirroring that described in human ventral intraparietal area.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[19635] doi:10.1162/imag_a_00492 [paper]

Basal ganglia and cerebellar lesions causally impact the neural encoding of temporal regularities.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[19636] doi:10.1162/imag_a_00497 [paper, repository]

The utility of explainable AI for MRI analysis: Relating model predictions to neuroimaging features of the aging brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: SHEscher/RelevanceRelated (MIT)

Status: code verified, 33 files readable, 11 matches

[19637] doi:10.1162/imag_a_00499 [paper, repository]

Beyond oscillations-Toward a richer characterization of brain states.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ElioBalestrieri/MV-eye (GPL-3.0)

Status: code verified, 55 files readable, 7 matches

[19638] doi:10.1186/s13229-025-00650-8 [paper, repository]

Autistic behavior is a common outcome of biallelic disruption of PDZD8 in humans and mice.

Journal: Molecular autism

Authors' code: video-annotator/pythonvideoannotator (MIT)

Status: code verified, 20 files readable

[19639] doi:10.1371/journal.pone.0318863 [paper, repository]

Testing the role of spontaneous activity in visuospatial perception with patterned optogenetics.

Journal: PloS one

Authors' code: zhuangjun1981/NeuroAnalysisTools (no license)

Status: code verified, 127 files readable, 6 matches

[19640] doi:10.1523/eneuro.0465-24.2025 [paper, repository]

Limiting Hearing Loss in Transgenic Mouse Models.

Journal: eNeuro

Authors' code: Zenodo 13773210 (CC-BY-4.0), Zenodo 13761406 (CC-BY-4.0), tbabola/cdh23 (no license)

Status: code verified, 76 files readable, 11 matches

[19641] doi:10.1556/2006.2025.00012 [paper, data]

Enhanced conditioning and disrupted extinction processes in men struggling with compulsive sexual behaviors.

Journal: Journal of behavioral addictions

Status: data only, 1 dataset cited

[19642] doi:10.3389/fonc.2025.1535478 [paper, data]

Explainable AI in medical imaging: an interpretable and collaborative federated learning model for brain tumor classification.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[19643] doi:10.3390/brainsci15030257 [paper, data]

Tracking Changes in Corticospinal Excitability During Visuomotor Paired Associative Stimulation to Predict Motor Resonance Rewriting.

Journal: Brain sciences

Status: data only, 1 dataset cited

[19644] doi:10.3390/ijms26052084 [paper, data]

Inhibition of Thioredoxin-Reductase by Auranofin as a Pro-Oxidant Anticancer Strategy for Glioblastoma: In Vitro and In Vivo Studies.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[19645] doi:10.3390/s25051471 [paper, repository]

EEG-Based Music Emotion Prediction Using Supervised Feature Extraction for MIDI Generation.

Journal: Sensors (Basel, Switzerland)

Authors' code: hdperezn/Autoencoder_Piano_Roll (no license)

Status: code verified, 9 files readable, 6 matches

[19646] doi:10.7554/elife.101825 [paper, data]

Characterization of direct Purkinje cell outputs to the brainstem.

Journal: eLife

Status: data only, 1 dataset cited

[19647] doi:10.7717/peerj.19036 [paper, data]

Neuropeptides from a praying mantis: what the loss of pyrokinins and tryptopyrokinins suggests about the endocrine functions of these peptides.

Journal: PeerJ

Status: data only, 37 datasets cited

Wednesday, 26 February 2025 (45 papers)

[19648] doi:10.1002/mrm.30424 [paper, repository]

Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3-Ex vivo imaging: Data processing, comparisons with microscopy, and tractography.

Journal: Magnetic resonance in medicine

Authors' code: Diffusion-MRI/awesome-preclinical-diffusion-mri (no license)

Status: empty repository, 1 file readable

[19649] doi:10.1002/mrm.30429 [paper, repository]

Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 1: In vivo small-animal imaging.

Journal: Magnetic resonance in medicine

Authors' code: ecaruyer/qspace (BSD-3-Clause), spine-generic.readthedocs.io (no license), Diffusion-MRI/awesome-preclinical-diffusion-mri (no license)

Status: code verified, 28 files readable

[19650] doi:10.1016/j.apsb.2025.02.027 [paper, repository]

Thermal proteome profiling (TPP) reveals NAMPT as the anti-glioma target of phenanthroindolizidine alkaloid PF403.

Journal: Acta pharmaceutica Sinica. B

Authors' code: hcji/ProSAP (GPL-3.0)

Status: code verified, 29 files readable, 2 matches

[19651] doi:10.1016/j.eclinm.2025.103128 [paper, repository]

Explainable deep learning algorithm for identifying cerebral venous sinus thrombosis-related hemorrhage (CVST-ICH) from spontaneous intracerebral hemorrhage using computed tomography.

Journal: EClinicalMedicine

Authors' code: CVST-Research/CVST-ICH_Classify (no license)

Status: code verified, 5 files readable

[19652] doi:10.1016/j.isci.2025.112104 [paper, repository]

From initial formation to developmental refinement: GABAergic inputs shape neuronal subnetworks in the primary somatosensory cortex.

Journal: iScience

Authors' code: EdnaHuang/SubnetworkAssembley2024 (no license), rochefort-lab/fissa (GPL-3.0), cossartlab/code-modol-et-al.-2020 (no license)

Status: code verified, 250 files readable, 7 matches

[19653] doi:10.1021/acschemneuro.5c00039 [paper, data]

Effect of SSR504734, a Selective Glycine Transporter Type 1 Inhibitor, on Seizure Thresholds, Neurotransmitter Levels, and Inflammatory Markers in Mice.

Journal: ACS chemical neuroscience

Status: data only, 2 datasets cited

[19654] doi:10.1038/s41419-025-07447-w [paper, data]

Atlas of expression of acyl CoA binding protein/diazepam binding inhibitor (ACBP/DBI) in human and mouse.

Journal: Cell death & disease

Status: code on request, 1 dataset cited

[19655] doi:10.1038/s41467-025-56859-x [paper]

Identification of antiviral RNAi regulators, ILF3/DHX9, recruit at ZIKV stem loop B to protect against ZIKV induced microcephaly.

Journal: Nature communications

Status: data only

[19656] doi:10.1038/s41467-025-57025-z [paper, repository]

Expectation violations signal goals in novel human communication.

Journal: Nature communications

Authors' code: ElioS-S/pupil-size (GPL-3.0), Zenodo 14333555 (CC-BY-4.0), tatiabu/communicationsurprise_datacode (no license)

Status: code verified, 23 files readable, 3 matches

[19657] doi:10.1038/s41467-025-57321-8 [paper, data]

Magneto-ionic vortices: voltage-reconfigurable swirling-spin analog-memory nanomagnets.

Journal: Nature communications

Status: data only, 1 dataset cited

[19658] doi:10.1038/s41586-025-08589-9 [paper, data]

Glycocalyx dysregulation impairs blood-brain barrier in ageing and disease.

Journal: Nature

Status: data only, 3 datasets cited

[19659] doi:10.1038/s41586-025-08617-8 [paper, repository]

A hypothalamic circuit underlying the dynamic control of social homeostasis.

Journal: Nature

Authors' code: DulacLabHarvard/SocialNeed (no license)

Status: empty repository, 1 file readable

[19660] doi:10.1038/s41586-025-08631-w [paper, repository]

Brain-wide presynaptic networks of functionally distinct cortical neurons.

Journal: Nature

Authors' code: NIMH-FNC/Brain-wide-presynaptic-networks (CC0-1.0)

Status: code verified, 21 files readable, 7 matches

[19661] doi:10.1038/s41586-025-08633-8 [paper, repository]

Programs, origins and immunomodulatory functions of myeloid cells in glioma.

Journal: Nature

Authors' code: BernsteinLab/Myeloid-Glioma (GPL-3.0), FloWuenne/scFunctions (no license), therneau/survival (no license), BernsteinLab/Calculate_Myeloid_cNMF_Usage (no license)

Status: code verified, 394 files readable, 9 matches

[19662] doi:10.1038/s41598-025-90540-z [paper, data]

Effects of startle on cognitive performance and physiological activity revealed by fNIRS and thermal imaging.

Journal: Scientific reports

Status: data only, 1 dataset cited

[19663] doi:10.1038/s41598-025-90649-1 [paper, data]

Early attention-deficit/hyperactivity disorder (ADHD) with NeuroDCT-ICA and rhinofish optimization (RFO) algorithm based optimized ADHD-AttentionNet.

Journal: Scientific reports

Status: data only, 2 datasets cited

[19664] doi:10.1038/s41598-025-90687-9 [paper, repository]

Electrophysiological evidence for the optimal tuning of attention.

Journal: Scientific reports

Authors' code: OSF u5v7f (no license)

Status: empty repository, 1 file readable

[19665] doi:10.1038/s41598-025-91079-9 [paper, repository]

Topic modeling analysis of the Allen Human Brain Atlas.

Journal: Scientific reports

Authors' code: fvalle1/hsbm_topicmodel (GPL-3.0)

Status: code verified, 8 files readable, 2 matches

[19666] doi:10.1038/s42003-025-07776-8 [paper]

Neural synchronization and its impact on intergroup attitudes in dynamic interactions.

Journal: Communications biology

Status: code on request

[19667] doi:10.1038/s44172-025-00352-2 [paper, repository]

A mechanics-informed machine learning framework for traumatic brain injury prediction in police and forensic investigations.

Journal: Communications engineering

Authors' code: OSF 6xb2p (no license)

Status: code verified, 17 files readable, 2 matches

[19668] doi:10.1038/s44319-025-00402-y [paper]

The NLRP1 inflammasome is an essential and selective mediator of axon pruning in neurons.

Journal: EMBO reports

Status: data only

[19669] doi:10.1073/pnas.2415557122 [paper, data]

Radiation-induced cellular plasticity primes glioblastoma for forskolin-mediated differentiation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[19670] doi:10.1126/sciadv.adq2881 [paper, data]

Local soft niches in mechanically heterogeneous primary tumors promote brain metastasis via mechanotransduction-mediated HDAC3 activity.

Journal: Science advances

Status: data only, 1 dataset cited

[19671] doi:10.1126/sciadv.adr1481 [paper, repository]

Modulation of blood-tumor barrier transcriptional programs improves intratumoral drug delivery and potentiates chemotherapy in GBM.

Journal: Science advances

Authors' code: theMILOlab/SPATA2 (gnu), Zenodo 22040374 (MIT)

Status: code verified, 91 files readable, 4 matches

[19672] doi:10.1126/sciadv.adr5051 [paper, repository]

An endogenous GLP-1 circuit engages VTA GABA neurons to regulate mesolimbic dopamine neurons and attenuate cocaine seeking.

Journal: Science advances

Authors' code: Zenodo 13984378 (CC-BY-4.0), rileymerkel/schmidt_lab_photometry_analysis (no license)

Status: code verified, 2 files readable

[19673] doi:10.1126/sciadv.adv2067 [paper, repository]

Cell type-specific 3D-genome organization and transcription regulation in the brain.

Journal: Science advances

Authors' code: Zenodo 14680867 (CC-BY-4.0)

Status: code verified

[19674] doi:10.1128/msystems.01540-24 [paper, data]

Dual RNA-seq reveals the complement protein C3-mediated host-pathogen interaction in the brain abscess caused by <i>Staphylococcus aureus</i>.

Journal: mSystems

Status: data only, 2 datasets cited

[19675] doi:10.1162/imag_a_00481 [paper, repository]

The effect of brain tissue anisotropy on the electric field caused by transcranial electric stimulation: Sensitivity analysis and magnetic resonance electrical impedance tomography.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF gcu5b (no license), simnibs.org (no license)

Status: code verified, 28 files readable, 3 matches

[19676] doi:10.1162/imag_a_00484 [paper, repository]

Unaware processing of words activates experience-derived information in conceptual-semantic brain networks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: doi:10.17632/gfb3xb5yty.1 (no license)

Status: code verified

[19677] doi:10.1162/imag_a_00490 [paper, repository]

HAITCH: A framework for distortion and motion correction in fetal multi-shell diffusion-weighted MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: FEDIToolbox (no license), IntelligentImaging/HAITCH (GPL-3.0)

Status: code verified, 35 files readable, 12 matches

[19678] doi:10.1162/imag_a_00494 [paper, repository]

Transcriptomic gradients of the human cerebellum.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: maedbhk/cerebellum_transcriptomics (no license)

Status: code verified, 30 files readable, 7 matches

[19679] doi:10.1186/s12964-025-02093-3 [paper]

ApoE2 affects insulin signaling in the hippocampus and spatial cognition of aged mice in a sex-dependent manner.

Journal: Cell communication and signaling : CCS

Status: code on request

[19680] doi:10.1523/eneuro.0438-24.2025 [paper, repository]

Spatiotemporal Clustering of Functional Ultrasound Signals at the Single-Voxel Level.

Journal: eNeuro

Authors' code: OpenfUS/PyfUS (MIT)

Status: code verified, 22 files readable, 4 matches

[19681] doi:10.1523/jneurosci.0688-24.2024 [paper, repository]

A Shift Toward Supercritical Brain Dynamics Predicts Alzheimer's Disease Progression.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: palvalab/EI-unbalance-and-DFA-exponents (no license)

Status: code verified, 3 files readable, 1 match

[19682] doi:10.21037/qims-24-1485 [paper, repository]

Deep learning for identifying cervical ossification of the posterior longitudinal ligament: a systematic review and meta-analysis.

Journal: Quantitative imaging in medicine and surgery

Authors' code: cdn.amegroups.cn/static/public (no license)

Status: code verified

[19683] doi:10.3389/fnins.2025.1537026 [paper, repository]

Mapping curvature domains in human V4 using CBV-sensitive layer-fMRI at 3T.

Journal: Frontiers in neuroscience

Authors' code: vistalab/vistasoft (no license)

Status: code verified, 2,000 files readable, 10 matches

[19684] doi:10.3389/fnmol.2025.1546375 [paper, data]

Profiling hippocampal neuronal populations reveals unique gene expression mosaics reflective of connectivity-based degeneration in the Ts65Dn mouse model of Down syndrome and Alzheimer's disease.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[19685] doi:10.3389/fpsyt.2025.1518762 [paper, repository]

Deep multimodal representations and classification of first-episode psychosis via live face processing.

Journal: Frontiers in psychiatry

Authors' code: KrishnaswamyLab/neural-PRISM (other)

Status: code verified, 6 files readable, 2 matches

[19686] doi:10.3390/cells14050340 [paper, data]

The Cholinergic Receptor Nicotinic α3 Was Reduced in the Hippocampus of Early Cognitively Impaired Adult Male Mice and Upregulated by Nicotine and Cytisine in HT22 Cells.

Journal: Cells

Status: data only, 1 dataset cited

[19687] doi:10.3758/s13415-025-01277-1 [paper, repository]

Brain stimulation over dorsomedial prefrontal cortex causally affects metacognitive bias but not mentalising.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF y5w2d (no license)

Status: code verified, 44 files readable, 2 matches

[19688] doi:10.3758/s13428-025-02620-7 [paper, data]

Approaches to inducing mental fatigue: A systematic review and meta-analysis of (neuro)physiologic indices.

Journal: Behavior research methods

Status: data only, 1 dataset cited

[19689] doi:10.7554/elife.91400 [paper, repository]

Omissions of threat trigger subjective relief and prediction error-like signaling in the human reward and salience systems.

Journal: eLife

Authors' code: OSF ywpks (no license)

Status: code verified, 32 files readable, 12 matches

[19690] doi:10.7554/elife.97433 [paper, repository]

An <i>Intranet</i> of Things approach for adaptable control of behavioral and navigation-based experiments.

Journal: eLife

Authors' code: losonczylab/behaviorMate (GPL-3.0), losonczylab/behaviormate_utils (GPL-3.0)

Status: code verified, 122 files readable, 2 matches

[19691] doi:10.7554/elife.98159 [paper, repository]

Basal ganglia output (entopeduncular nucleus) coding of contextual kinematics and reward in the freely moving mouse.

Journal: eLife

Authors' code: machenslab/dPCA (MIT), Zenodo 14846394 (CC-BY-4.0)

Status: code verified, 25 files readable, 2 matches

[19692] doi:10.7554/elife.98304 [paper, data]

Neural mechanisms of learned suppression uncovered by probing the hidden attentional priority map.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 25 February 2025 (26 papers, 20 on this page)

[19693] doi:10.1016/j.bpsgos.2025.100473 [paper, repository]

Comparing Data-Driven Subtypes of Depression Informed by Clinical and Neuroimaging Data: A Registered Report.

Journal: Biological psychiatry global open science

Authors' code: PersonomicsLab/CompareSubtypes (no license)

Status: code verified, 17 files readable, 3 matches

[19694] doi:10.1016/j.nbd.2025.106858 [paper, repository]

Essential tremor disrupts rhythmic brain networks during naturalistic movement.

Journal: Neurobiology of disease

Authors' code: twestWTCN/NetworksInEssentialTremor (MIT), Zenodo 14973441 (MIT), twestwtcn/west_2025_etmotornetworks (no license), Zenodo 15223587 (MIT)

Status: code verified, 131 files readable, 13 matches

[19695] doi:10.1016/j.nicl.2025.103760 [paper, repository]

Event-related potential markers of subjective cognitive decline and mild cognitive impairment during a sustained visuo-attentive task.

Journal: NeuroImage. Clinical

Authors' code: albertoarturovergani/PREVIEWTCVT (GPL-3.0)

Status: code verified, 6 files readable, 5 matches

[19696] doi:10.1016/j.xinn.2025.100846 [paper, repository]

Thalamic burst and tonic firing selectively indicate patients' consciousness level and recovery.

Journal: Innovation (Cambridge (Mass.))

Authors' code: elifesciences-publications/pDOC (MIT)

Status: code verified, 74 files readable, 4 matches

[19697] doi:10.1021/jacs.4c08175 [paper, data]

Dynamic <i>In Vivo</i> Mapping of the Methylproteome Using a Chemoenzymatic Approach.

Journal: Journal of the American Chemical Society

Status: data only, 4 datasets cited

[19698] doi:10.1038/s41467-025-56780-3 [paper, repository]

A column-like organization for ocular dominance in mouse visual cortex.

Journal: Nature communications

Authors' code: pgoltstein/mouse-od-columns (GPL-3.0)

Status: code verified, 51 files readable, 20 matches

[19699] doi:10.1038/s41593-025-01889-3 [paper, data]

Neuronal polyunsaturated fatty acids are protective in ALS/FTD.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[19700] doi:10.1038/s42003-025-07725-5 [paper, repository]

Neurite development varies across the hippocampus and covaries with the cellular composition of hippocampal tissue.

Journal: Communications biology

Authors' code: JonahKember/hippocampal_microstructure (no license), Zenodo 14850964 (CC-BY-4.0)

Status: code verified, 2 files readable

[19701] doi:10.1073/pnas.2416757122 [paper, data]

NOTCH, ERK, and SHH signaling respectively control the fate determination of cortical glia and olfactory bulb interneurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[19702] doi:10.1073/pnas.2419818122 [paper, repository]

pTDP-43 levels correlate with cell type-specific molecular alterations in the prefrontal cortex of <i>C9orf72</i> ALS/FTD patients.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: wanghlv/c9alsftd_multiome (no license)

Status: code verified, 8 files readable, 7 matches

[19703] doi:10.1093/braincomms/fcaf020 [paper, repository]

Anti-seizure medication tapering correlates with daytime delta band power reduction in the cortex.

Journal: Brain communications

Authors' code: cnnp-lab/2024_ASM_EEG (no license)

Status: code verified, 4 files readable, 4 matches

[19704] doi:10.1097/j.pain.0000000000003512 [paper, repository]

Modelling inflammation-induced peripheral sensitization in a dish-more complex than expected?

Journal: Pain

Authors' code: Zenodo 12783430 (CC-BY-4.0), Zenodo 13122856 (CC-BY-4.0)

Status: code verified, 1 file readable

[19705] doi:10.1162/imag_a_00487 [paper, repository]

BrainAgeNeXt: Advancing brain age modeling for individuals with multiple sclerosis.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: FrancescoLR/BrainAgeNeXt (Apache-2.0)

Status: code verified, 3 files readable, 1 match

[19706] doi:10.1186/s12951-025-03152-0 [paper, data]

Decellularized tissue matrices hydrogels functionalized with extracellular vesicles promote macrophage reprogramming and neural stem cell differentiation for spinal cord injury repair.

Journal: Journal of nanobiotechnology

Status: data only, 1 dataset cited

[19707] doi:10.1186/s13041-025-01188-9 [paper, data]

Roles of mediodorsal thalamus in observational fear-related neural activity in mouse anterior cingulate cortex.

Journal: Molecular brain

Status: data only, 1 dataset cited

[19708] doi:10.1186/s41747-024-00548-9 [paper, repository]

Deep learning-based Intraoperative MRI reconstruction.

Journal: European radiology experimental

Authors' code: JonOttesen/intraop_recon (Apache-2.0)

Status: empty repository, 2 files readable

[19709] doi:10.1186/s43556-025-00251-0 [paper, data]

Cancer brain metastasis: molecular mechanisms and therapeutic strategies.

Journal: Molecular biomedicine

Status: data only, 2 datasets cited

[19710] doi:10.1371/journal.pone.0318306 [paper, data]

Enhancing anesthetic techniques for improving whisker stimulation response in the barrel cortex.

Journal: PloS one

Status: data only, 1 dataset cited

[19711] doi:10.1371/journal.pone.0319101 [paper, repository]

Spatial prediction of dynamic interactions in rats.

Journal: PloS one

Authors' code: pepovillacorta/PaperInteractions (no license)

Status: code verified, 14 files readable

[19712] doi:10.17912/micropub.biology.001501 [paper, repository]

Cell-Type Specific Variation in X-Chromosome Dosage Compensation in Drosophila.

Journal: microPublication biology

Authors' code: flycellatlas.org (no license), Zenodo 14577924 (CC-BY-4.0)

Status: code verified, 16 files readable, 3 matches

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