Every paper, by date: page 90

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 90 of 200: 17 February 2025 to 8 February 2025.

Monday, 17 February 2025 (33 papers, 26 on this page)

[19937] doi:10.1016/j.isci.2025.112040 [paper]

From the pancreas to the amygdala: New brain area critical for ingestive and motivated behavior control exerted by amylin.

Journal: iScience

Status: code on request

[19938] doi:10.1016/j.isci.2025.112041 [paper, data]

Repeated lidocaine exposure induces synaptic and cognitive impairment in aged mice by activating microglia and neurotoxic A1 astrocytes.

Journal: iScience

Status: code on request, 1 dataset cited

[19939] doi:10.1016/j.isci.2025.112042 [paper]

Actin fenestrae amplify the membrane response to hypertonic stress in osmosensory neurons.

Journal: iScience

Status: code on request

[19940] doi:10.1016/j.nicl.2025.103758 [paper, repository]

White matter microstructural integrity mediates associations between prenatal endocrine-disrupting chemicals exposure and intelligence in adolescents.

Journal: NeuroImage. Clinical

Authors' code: MIC-DKFZ/TractSeg (Apache-2.0), canlab/CanlabCore (GPL-2.0)

Status: code verified, 2,108 files readable, 2 matches

[19941] doi:10.1038/s41386-025-02058-7 [paper, data]

Prediction of alcohol intake patterns with olfactory and gustatory brain connectivity networks.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[19942] doi:10.1038/s41467-025-56854-2 [paper, repository]

SGK1 drives hippocampal demyelination and diabetes-associated cognitive dysfunction in mice.

Journal: Nature communications

Authors' code: apanhui/scRNA_analysis_mmu (no license)

Status: code verified, 12 files readable

[19943] doi:10.1038/s41467-025-56855-1 [paper, repository]

Copy number variants and the tangential expansion of the cerebral cortex.

Journal: Nature communications

Authors' code: miykael/parcellation_fragmenter (BSD-3-Clause), Zhijie31/CNV-SA (no license)

Status: code verified, 25 files readable, 9 matches

[19944] doi:10.1038/s41537-025-00571-8 [paper]

Intersensory attention deficits in schizophrenia relate to ongoing sensorimotor beta oscillations.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[19945] doi:10.1038/s41586-025-08735-3 [paper, repository]

Characterization of single neurons reprogrammed by pancreatic cancer.

Journal: Nature

Authors' code: DeplanckeLab/BRB-seqTools (CC-BY-NC-SA-4.0)

Status: code verified, 17 files readable

[19946] doi:10.1038/s41592-024-02582-2 [paper, repository]

MARBLE: interpretable representations of neural population dynamics using geometric deep learning.

Journal: Nature methods

Authors' code: Dynamics-of-Neural-Systems-Lab/MARBLE (MIT)

Status: code verified, 46 files readable, 19 matches

[19947] doi:10.1038/s41593-025-01876-8 [paper, repository]

Compartmentalized dendritic plasticity in the mouse retrosplenial cortex links contextual memories formed close in time.

Journal: Nature neuroscience

Authors' code: dendrites.gr/wp-content/uploads (no license), Almeida-FilhoDG/ConcatMiniscope (GPL-3.0)

Status: code verified, 275 files readable, 2 matches

[19948] doi:10.1038/s41597-025-04569-w [paper, repository]

SpiDa-MRI: behavioral and (f)MRI data of adults with fear of spiders.

Journal: Scientific data

Authors' code: univiemops/spider20-fmri-data (no license)

Status: code verified, 12 files readable, 9 matches

[19949] doi:10.1038/s41598-024-83571-5 [paper]

Decoding the heterogeneous subpopulations of glioblastoma for prognostic stratification and uncovering the promalignant role of PSMC2.

Journal: Scientific reports

Status: code on request

[19950] doi:10.1038/s41598-025-85703-x [paper, repository]

Stacked CNN-based multichannel attention networks for Alzheimer disease detection.

Journal: Scientific reports

Authors' code: najm-h/Alzheimer (no license)

Status: code verified, 4 files readable, 1 match

[19951] doi:10.1038/s41598-025-88769-9 [paper, data]

Prosopagnosia and the role of face-sensitive areas in race perception.

Journal: Scientific reports

Status: data only, 1 dataset cited

[19952] doi:10.1038/s41598-025-90115-y [paper]

Multimodal surface-based transformer model for early diagnosis of Alzheimer's disease.

Journal: Scientific reports

Status: code on request

[19953] doi:10.1038/s41598-025-90164-3 [paper, data]

A hybrid optimization-enhanced 1D-ResCNN framework for epileptic spike detection in scalp EEG signals.

Journal: Scientific reports

Status: data only, 2 datasets cited

[19954] doi:10.1093/braincomms/fcaf073 [paper, repository]

Neural correlates of uncertainty processing in psychosis spectrum disorder.

Journal: Brain communications

Authors' code: agschlagenhauf/DoReMe (no license)

Status: code verified, 48 files readable, 1 match

[19955] doi:10.1093/braincomms/fcaf074 [paper, repository]

Exploring functional connectivity in clinical and data-driven groups of preterm and term adults.

Journal: Brain communications

Authors' code: lailahadaya/preterm-ExecuteSNF.CC (MIT), frantisekvasa/functional_network_development (MIT), Zenodo 7051925 (MIT), code-neuro/ptestr (other)

Status: code verified, 34 files readable, 3 matches

[19956] doi:10.1186/s13046-025-03312-y [paper, data]

Targeting TUBB2B inhibits triple-negative breast cancer growth and brain-metastatic colonization.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 2 datasets cited

[19957] doi:10.1186/s13054-025-05295-w [paper, repository]

Impact of age and mean intracranial pressure on the morphology of intracranial pressure waveform and its association with mortality in traumatic brain injury.

Journal: Critical care (London, England)

Authors' code: CMataczynski/ICMPWaveformClassificationPlugin (GPL-3.0)

Status: code verified, 9 files readable

[19958] doi:10.3389/fninf.2025.1527582 [paper, repository]

Contrastive self-supervised learning for neurodegenerative disorder classification.

Journal: Frontiers in neuroinformatics

Authors' code: VadymV/clinic-net (MIT)

Status: code verified, 15 files readable, 3 matches

[19959] doi:10.3389/fnins.2025.1502764 [paper, data]

Brain aromatase and its relationship with parental experience and behavior in male mice.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[19960] doi:10.3389/fnsyn.2025.1548563 [paper, repository]

Postsynaptic spiking determines anti-Hebbian LTD in visual cortex basket cells.

Journal: Frontiers in synaptic neuroscience

Authors' code: pj-sjostrom/MultiPatch (GPL-3.0), pj-sjostrom/jScan (no license), pj-sjostrom/LineScanAnalysis (AGPL-3.0), pj-sjostrom/qMorph (GPL-3.0)

Status: code verified, 8 files readable

[19961] doi:10.3390/biology14020210 [paper, data]

Objective Pain Assessment Using Deep Learning Through EEG-Based Brain-Computer Interfaces.

Journal: Biology

Status: data only, 1 dataset cited

[19962] doi:10.7554/elife.101802 [paper, data]

Statistical learning beyond words in human neonates.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 16 February 2025 (6 papers)

[19963] doi:10.1016/j.jare.2025.02.020 [paper]

H4K12 lactylation potentiates mitochondrial oxidative stress via the Foxo1 pathway in diabetes-induced cognitive impairment.

Journal: Journal of advanced research

Status: code on request

[19964] doi:10.1038/s41467-025-57027-x [paper, repository]

Topological identification and interpretation for single-cell epigenetic regulation elucidation in multi-tasks using scAGDE.

Journal: Nature communications

Authors' code: timydaley/scABC (no license), aertslab/cistopic (no license), r3fang/SnapATAC (GPL-3.0), timoast/signac (other), GreenleafLab/ArchR (MIT), sgoldenlab/simba (BSD-3-Clause), uci-cbcl/SAILER (MIT), YosefLab/scvi-tools (BSD-3-Clause), BIMSBbioinfo/bavaria (LGPL-3.0), satijalab/seurat (other), ttgump/scDeepCluster (Apache-2.0), Philyzh8/scTAG (MIT), Philyzh8/scMGCA (MIT), Hgy1014/scAGDE (MIT), scagde-tutorial.readthedocs.io (no license), Zenodo 14512100 (MIT)

Status: code verified, 1,187 files readable, 40 matches

[19965] doi:10.1038/s44172-025-00370-0 [paper]

Helmet material design for mitigating traumatic axonal injuries through AI-driven constitutive law enhancement.

Journal: Communications engineering

Status: code on request

[19966] doi:10.1038/s44271-025-00211-y [paper, repository]

Neural codes track prior events in a narrative and predict subsequent memory for details.

Journal: Communications psychology

Authors' code: OSF u3cfr (no license), Zenodo 14620539 (CC-BY-4.0)

Status: code verified, 12 files readable, 1 match

[19967] doi:10.1162/opmi_a_00189 [paper, repository]

Approximating Human-Level 3D Visual Inferences With Deep Neural Networks.

Journal: Open mind : discoveries in cognitive science

Authors' code: vsitzmann/light-field-networks (MIT), facebookresearch/dinov2 (Apache-2.0)

Status: code verified, 260 files readable, 6 matches

[19968] doi:10.3390/brainsci15020205 [paper, data]

The Endothelial Cell-Related Genes <i>EIF1</i> and <i>HSPA1B</i> Contribute to the Pathogenesis of Alzheimer's Disease by Modulating Peripheral Immunoinflammatory Responses.

Journal: Brain sciences

Status: data only, 2 datasets cited

Saturday, 15 February 2025 (14 papers)

[19969] doi:10.1007/s00422-025-01003-7 [paper, repository]

Antifragile control systems in neuronal processing: a sensorimotor perspective.

Journal: Biological cybernetics

Authors' code: ki-zentrum/bio-cybernetics-antifragility-codebase (no license)

Status: code verified, 23 files readable, 5 matches

[19970] doi:10.1007/s10143-025-03338-y [paper]

Neurosurgical management of brain metastases in the elderly: a prospective study on adverse event prevalence and predictors.

Journal: Neurosurgical review

Status: code on request

[19971] doi:10.1007/s10548-025-01108-z [paper, repository]

Brain Dynamics of Speech Modes Encoding: Loud and Whispered Speech Versus Standard Speech.

Journal: Brain topography

Authors' code: yareta.unige.ch/home (no license)

Status: code verified

[19972] doi:10.1016/j.heliyon.2025.e42693 [paper, data]

Inhibitory effects of saffron compounds on multiple sclerosis: Molecular docking and dynamic, enhancing properties with gold nanoparticles and evaluating antioxidant, antibacterial, cytotoxicity.

Journal: Heliyon

Status: data only, 2 datasets cited

[19973] doi:10.1016/j.isci.2025.112036 [paper, repository]

Rocking during sleep reduces motor deficits and beta-amyloid levels in an Alzheimer's mouse model.

Journal: iScience

Authors' code: BSRLab (no license)

Status: code verified

[19974] doi:10.1016/j.isci.2025.112037 [paper]

Contribution of neurons that express <i>fruitless</i> and <i>Clock</i> transcription factors to behavioral rhythms and courtship.

Journal: iScience

Status: code on request

[19975] doi:10.1038/s41467-025-56731-y [paper, repository]

Exploring replay.

Journal: Nature communications

Authors' code: Zenodo 13961230 (CC-BY-4.0), geoant1/exploring_replay (MIT)

Status: code verified, 82 files readable, 5 matches

[19976] doi:10.1038/s41531-025-00878-4 [paper, repository]

Patient-centered brain transcriptomic and multimodal imaging determinants of clinical progression, physical activity, and treatment needs in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: neuropm-lab.com/publication-codes.html (no license)

Status: code verified

[19977] doi:10.1038/s41540-025-00492-3 [paper, repository]

Mathematical modeling of multicellular tumor spheroids quantifies inter-patient and intra-tumor heterogeneity.

Journal: NPJ systems biology and applications

Authors' code: kcnguyen3191/Modeling-Tumor-Spheroids (MIT)

Status: code verified, 14 files readable, 4 matches

[19978] doi:10.1038/s41597-025-04554-3 [paper, repository]

DeepFlood for Inundated Vegetation High-Resolution Dataset for Accurate Flood Mapping and Segmentation.

Journal: Scientific data

Authors' code: figshare 28328339 (CC-BY-4.0)

Status: code verified

[19979] doi:10.1038/s41597-025-04597-6 [paper, data]

Transcriptomics and epigenomics datasets of primary brain cancers in formalin-fixed paraffin embedded format.

Journal: Scientific data

Status: data only, 1 dataset cited

[19980] doi:10.1038/s41598-025-89437-8 [paper]

Neuromodulation perception by the general public.

Journal: Scientific reports

Status: code on request

[19981] doi:10.1038/s41746-025-01499-0 [paper, repository]

Self-supervised identification and elimination of harmful datasets in distributed machine learning for medical image analysis.

Journal: NPJ digital medicine

Authors' code: RaissaSouza/decentralized-quality-control (no license)

Status: code verified, 10 files readable, 1 match

[19982] doi:10.1186/s11689-025-09596-7 [paper, repository]

The striatal matrix compartment is expanded in autism spectrum disorder.

Journal: Journal of neurodevelopmental disorders

Authors' code: jeff-waugh/Striatal-Connectivity-based-Parcellation (no license)

Status: code verified, 17 files readable, 2 matches

Friday, 14 February 2025 (28 papers)

[19983] doi:10.1002/advs.202405537 [paper, data]

Roles of Kdm6a and Kdm6b in Regulation of Mammalian Neural Regeneration.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[19984] doi:10.1002/ped4.12471 [paper, data]

Characterization of immune microenvironment associated with medulloblastoma metastasis based on explainable machine learning.

Journal: Pediatric investigation

Status: data only, 1 dataset cited

[19985] doi:10.1007/s00221-025-07002-1 [paper, data]

Analysis of frequency domain features for the classification of evoked emotions using EEG signals.

Journal: Experimental brain research

Status: data only, 1 dataset cited

[19986] doi:10.1016/j.isci.2025.112000 [paper]

Actin maintains synaptic transmission by restraining vesicle release probability.

Journal: iScience

Status: code on request

[19987] doi:10.1016/j.isci.2025.112024 [paper, data]

Central GABAergic neuromodulation of nocifensive behaviors in bumble bees.

Journal: iScience

Status: data only, 1 dataset cited

[19988] doi:10.1021/acs.analchem.4c04887 [paper, data]

4D-Spatiotemporal SHG Imaging for the Analysis of Drug-Induced Changes in the Dura Mater.

Journal: Analytical chemistry

Status: data only, 2 datasets cited

[19989] doi:10.1038/s41467-025-56847-1 [paper, data]

Single-cell analysis identifies Ifi27l2a as a gene regulator of microglial inflammation in the context of aging and stroke in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[19990] doi:10.1038/s41598-025-86110-y [paper, repository]

Reducing inference cost of Alzheimer's disease identification using an uncertainty-aware ensemble of uni-modal and multi-modal learners.

Journal: Scientific reports

Authors' code: Msgun/uncertainty-based-multimodality (MIT)

Status: code verified, 6 files readable, 3 matches

[19991] doi:10.1038/s41598-025-86762-w [paper, repository]

Individual differences in wellbeing are supported by separable sets of co-active self- and visual-attention-related brain networks.

Journal: Scientific reports

Authors' code: YumengMa01/WellbeingNetworks (no license)

Status: code verified, 13 files readable, 7 matches

[19992] doi:10.1038/s41598-025-89779-3 [paper, data]

The neuronal and glial cell diversity in the celiac ganglion revealed by single-nucleus RNA sequencing.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[19993] doi:10.1038/s42003-025-07703-x [paper, repository]

Common neuroanatomical differential factors underlying heterogeneous gray matter volume variations in five common psychiatric disorders.

Journal: Communications biology

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0)

Status: code verified, 50 files readable

[19994] doi:10.1038/s44277-025-00026-z [paper, repository]

Multimodal objective assessment of impulsivity in healthy and mood disorder participants.

Journal: NPP - digital psychiatry and neuroscience

Authors' code: lbishal/multimodal_impulsivity (no license)

Status: code verified, 6 files readable

[19995] doi:10.1073/pnas.2415786122 [paper, repository]

A method for unsupervised learning of coherent spatiotemporal patterns in multiscale data.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: klapo/mrCOSTS-PNAS-figures (MIT)

Status: code verified, 5 files readable, 2 matches

[19996] doi:10.1093/braincomms/fcaf068 [paper, repository]

Neuronal and glial dysfunction, white matter hyperintensities and cognition in ageing and Alzheimer's disease.

Journal: Brain communications

Authors' code: osubbal/AD-Biomarkers-Cognition_ALee (no license)

Status: code verified, 2 files readable, 2 matches

[19997] doi:10.1093/braincomms/fcaf071 [paper, data]

Speech outcomes in cochlear implant users depend on visual cross-modal cortical activity measured before or after implantation.

Journal: Brain communications

Status: data only, 1 dataset cited

[19998] doi:10.1101/gr.280070.124 [paper, repository]

Identification of the shortest species-specific oligonucleotide sequences.

Journal: Genome research

Authors' code: Georgakopoulos-Soares-lab/dna-quasi-primes (no license)

Status: code verified, 17 files readable, 8 matches

[19999] doi:10.1126/sciadv.adn8631 [paper, repository]

Chronic exposure to glucocorticoids amplifies inhibitory neuron cell fate during human neurodevelopment in organoids.

Journal: Science advances

Authors' code: vtraag/louvain-igraph (GPL-3.0), bhargavchippada/forceatlas2 (GPL-3.0), theislab/neural_organoid_atlas (no license), jnothman/UpSetPlot (BSD-2-Clause), UcarLab/AMULET (GPL-3.0), theislab/anndata2ri (GPL-3.0), KrishnaswamyLab/MAGIC (GPL-2.0), morris-lab/CellOracle (Apache-2.0), Zenodo 10391945 (CC-BY-4.0)

Status: code verified, 313 files readable, 13 matches

[20000] doi:10.1186/s12967-025-06112-2 [paper]

Critical role of Oas1g and STAT1 pathways in neuroinflammation: insights for Alzheimer's disease therapeutics.

Journal: Journal of translational medicine

Status: data only

[20001] doi:10.1212/wnl.0000000000213375 [paper, repository]

Unbiased CSF Proteomics in Patients With Idiopathic Normal Pressure Hydrocephalus to Identify Molecular Signatures and Candidate Biomarkers.

Journal: Neurology

Authors' code: ACTRU/iNPH-CSF-Proteomics (no license)

Status: code verified, 4 files readable, 4 matches

[20002] doi:10.1371/journal.pone.0318998 [paper, repository]

Hybrid-RViT: Hybridizing ResNet-50 and Vision Transformer for Enhanced Alzheimer's disease detection.

Journal: PloS one

Authors' code: bpb-us-w2.wpmucdn.com/sites.wustl.edu/dist (no license), itvivi/Hybrid-RViT (no license)

Status: code verified, 2 files readable, 2 matches

[20003] doi:10.1523/eneuro.0114-24.2024 [paper, repository]

Temporal Lobectomy Evidence for the Role of the Amygdala in Early Emotional Face and Body Processing.

Journal: eNeuro

Authors' code: OSF jwm6t (no license)

Status: code verified, 2 files readable

[20004] doi:10.1523/eneuro.0402-24.2025 [paper, repository]

Spatial Heterogeneity in Myelin Sheathing Impacts Signaling Reliability and Susceptibility to Injury.

Journal: eNeuro

Authors' code: atalidou/myelinPatterns (no license)

Status: code verified, 5 files readable, 8 matches

[20005] doi:10.2147/dddt.s510752 [paper, data]

Identification of Key Genes in Esketamine's Therapeutic Effects on Perioperative Neurocognitive Disorders via Transcriptome Sequencing.

Journal: Drug design, development and therapy

Status: data only, 1 dataset cited

[20006] doi:10.3389/fnetp.2025.1488349 [paper, repository]

PINNing cerebral blood flow: analysis of perfusion MRI in infants using physics-informed neural networks.

Journal: Frontiers in network physiology

Authors' code: cgalaz01/supinn (MIT)

Status: code verified, 9 files readable, 4 matches

[20007] doi:10.3390/brainsci15020198 [paper, data]

Speech Stream Composition Affects Statistical Learning: Behavioral and Neural Evidence.

Journal: Brain sciences

Status: data only, 1 dataset cited

[20008] doi:10.3390/diagnostics15040470 [paper, repository]

Brain Morphometry and Cognitive Features in the Prediction of Irritable Bowel Syndrome.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: arvidl/ibs-brain (MIT)

Status: code verified, 11 files readable, 29 matches

[20009] doi:10.3892/br.2025.1945 [paper, repository]

Acute neurological regression following fever as presenting sign of pontocerebellar hypoplasia type 2D (<i>SEPSECS</i> mutation).

Journal: Biomedical reports

Authors' code: arq5x/bedtools2 (MIT)

Status: code verified, 447 files readable

[20010] doi:10.7554/elife.98280 [paper, repository]

Sleep need driven oscillation of glutamate synaptic phenotype.

Journal: eLife

Authors' code: konopkalab/sleep_need_seq (no license)

Status: empty repository, 1 file readable

Thursday, 13 February 2025 (26 papers)

[20011] doi:10.1016/j.isci.2025.112016 [paper, repository]

The neural correlates of logical-mathematical symbol systems processing resemble those of spatial cognition more than language processing.

Journal: iScience

Authors' code: neurosynth/neurosynth (MIT)

Status: code verified, 38 files readable, 5 matches

[20012] doi:10.1016/j.isci.2025.112021 [paper]

Superior colliculus peri-saccadic field potentials are dominated by a visual sensory preference for the upper visual field.

Journal: iScience

Status: code on request

[20013] doi:10.1016/j.isci.2025.112022 [paper, repository]

Presymptomatic targeted circuit manipulation for ameliorating Huntington's disease pathogenesis.

Journal: iScience

Authors' code: Hochgeschwender-Lab/SpikeTurnpike (no license)

Status: code verified, 562 files readable, 2 matches

[20014] doi:10.1016/j.patter.2025.101182 [paper, repository]

GREEN: A lightweight architecture using learnable wavelets and Riemannian geometry for biomarker exploration with EEG signals.

Journal: Patterns (New York, N.Y.)

Authors' code: Roche/neuro-green (Apache-2.0), benchopt.github.io (no license), Zenodo 14597454 (Apache-2.0)

Status: code verified, 32 files readable, 11 matches

[20015] doi:10.1016/j.stemcr.2025.102418 [paper, repository]

Clonal lineage tracing and transcriptomics of cortical progenitor populations reveal maintenance of differentiation potential.

Journal: Stem cell reports

Authors' code: Yuzwalab (no license)

Status: code verified

[20016] doi:10.1016/j.xhgg.2025.100417 [paper, data]

A proposed role for CDO1 in CNS development: Three children with rare missense variants and a neurological phenotype.

Journal: HGG advances

Status: data only, 1 dataset cited

[20017] doi:10.1038/s41467-025-56183-4 [paper, repository]

Proactive and reactive construction of memory-based preferences.

Journal: Nature communications

Authors' code: codeocean:2559896 (no license)

Status: code found, still to be checked

[20018] doi:10.1038/s41467-025-56321-y [paper, repository]

Evaluating normative representation learning in generative AI for robust anomaly detection in brain imaging.

Journal: Nature communications

Authors' code: compai-lab/2024-ncomms-bercea (no license), ci-ber/GenAI_UAD (GPL-3.0)

Status: code verified, 233 files readable, 5 matches

[20019] doi:10.1038/s41467-025-56560-z [paper, repository]

Unraveling microglial spatial organization in the developing human brain with DeepCellMap, a deep learning approach coupled with spatial statistics.

Journal: Nature communications

Authors' code: holcman-lab/DeepCellMap (MIT), bionewmetrics.org (no license), Zenodo 14003597 (CC-BY-4.0)

Status: code verified, 41 files readable, 9 matches

[20020] doi:10.1038/s41467-025-56819-5 [paper]

2D (NH₄)BiI₃ enables non-volatile optoelectronic memories for machine learning.

Journal: Nature communications

Status: code on request

[20021] doi:10.1038/s41598-025-88596-y [paper, repository]

Comparison of derivative-based and correlation-based methods to estimate effective connectivity in neural networks.

Journal: Scientific reports

Authors' code: netsiphd/netrd (MIT), UKE-ICNS/LCC (no license)

Status: code verified, 74 files readable, 6 matches

[20022] doi:10.1038/s41598-025-88910-8 [paper, repository]

Orthogonal neural representations support perceptual judgments of natural stimuli.

Journal: Scientific reports

Authors' code: AmyMNi/NaturalImageThresholds (MIT), ramanujansrinath/UntanglingBananas (MIT)

Status: code verified, 21 files readable, 4 matches

[20023] doi:10.1038/s41598-025-89732-4 [paper, repository]

Coordinating multiple mental faculties during learning.

Journal: Scientific reports

Authors' code: don-tpanic/brain_data (no license), don-tpanic/CostlyEnergyPrinciple (no license)

Status: code verified, 31 files readable, 9 matches

[20024] doi:10.1038/s44319-025-00372-1 [paper, repository]

Transcriptional enhancers in human neuronal differentiation provide clues to neuronal disorders.

Journal: EMBO reports

Authors' code: hkawaji/dpi1 (GPL-2.0), anderssonrobin/enhancers (GPL-3.0), fantom.gsc.riken.jp/5/suppl (no license)

Status: code verified, 20 files readable, 1 match

[20025] doi:10.1073/pnas.2421022122 [paper, repository]

Spatial profiling of the interplay between cell type- and vision-dependent transcriptomic programs in the visual cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: shekharlab/mouseVC (no license), FangmingXie/vision_and_visctx (GPL-3.0), FangmingXie/SingleCellArchetype (MIT), Zenodo 13916877 (CC-BY-4.0)

Status: code verified, 10 files readable, 5 matches

[20026] doi:10.1093/braincomms/fcaf041 [paper, repository]

High-frequency oscillations in epileptic and non-epileptic Alzheimer's disease patients and the differential effect of levetiracetam on the oscillations.

Journal: Brain communications

Authors' code: Vossel-Lab/HFO-AD-Lev (MIT)

Status: empty repository, 2 files readable

[20027] doi:10.1177/0271678x251321640 [paper, repository]

A novel model to quantify blood transit time in cerebral arteries using ASL-based 4D magnetic resonance angiography with example clinical application in moyamoya disease.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: Zenodo 12751605 (CC-BY-4.0), abhogal-lab/seevr (GPL-3.0)

Status: code verified, 211 files readable

[20028] doi:10.1371/journal.pcbi.1012247 [paper, repository]

Detection of latent brain states from spontaneous neural activity in the amygdala.

Journal: PLoS computational biology

Authors' code: anaucoin/Aucoin-ML-LFP-2024 (no license)

Status: code verified, 5 files readable, 5 matches

[20029] doi:10.1371/journal.pcbi.1012804 [paper, repository]

Hexagons all the way down: grid cells as a conformal isometric map of space.

Journal: PLoS computational biology

Authors' code: CINPLA/spatial-maps (GPL-3.0), bioAI-Oslo/CI-grid-cells (MIT)

Status: code verified, 31 files readable, 4 matches

[20030] doi:10.1371/journal.pone.0318234 [paper, repository]

EEG theta and alpha oscillations during tactical decision-making: An examination of the neural efficiency hypothesis in volleyball.

Journal: PloS one

Authors' code: OSF ck5zu (no license)

Status: empty repository, 1 file readable

[20031] doi:10.1371/journal.pone.0318663 [paper, repository]

Home cage-based insights into motor learning and strategy adaptation in a Huntington disease mouse model.

Journal: PloS one

Authors' code: ubcbraincircuits/PiPaw (MIT), ubcbraincircuits/PiPaw2.0_DataAnalysis (MIT)

Status: code verified, 56 files readable, 5 matches

[20032] doi:10.3389/fnins.2025.1445006 [paper, data]

Modulation of vigilance/alertness using beta (30 Hz) transcranial alternating current stimulation.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[20033] doi:10.3389/fnins.2025.1531122 [paper, repository]

Comparative analysis of AAV serotypes for transduction of olfactory sensory neurons.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 13620762 (CC-BY-4.0), alexdobin/star (MIT), theislab/scanpy (BSD-3-Clause), LiuzLab/Mouse-AAV-OSN (MIT)

Status: code verified, 475 files readable, 9 matches

[20034] doi:10.3390/diagnostics15040454 [paper, repository]

A Machine-Learning-Based Analysis of Resting State Electroencephalogram Signals to Identify Latent Schizotypal and Bipolar Development in Healthy University Students.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: bilickiv/milabwp4 (no license)

Status: code verified, 7 files readable, 1 match

[20035] doi:10.3390/s25041147 [paper, data]

Adaptive GCN and Bi-GRU-Based Dual Branch for Motor Imagery EEG Decoding.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[20036] doi:10.7554/elife.101950 [paper, repository]

From histology to macroscale function in the human amygdala.

Journal: eLife

Authors' code: MICA-MNI/micapipe (GPL-3.0), mica-mni/micaopen (GPL-3.0)

Status: code verified, 391 files readable, 8 matches

Wednesday, 12 February 2025 (39 papers)

[20037] doi:10.1007/s00213-025-06753-7 [paper, data]

Opioidergic modulation of monetary incentive delay fMRI responses.

Journal: Psychopharmacology

Status: data only, 2 datasets cited

[20038] doi:10.1016/j.celrep.2025.115299 [paper, repository]

Astrocyte Kir4.1 expression level territorially controls excitatory transmission in the brain.

Journal: Cell reports

Authors' code: RusakovLab/CellReport (no license), modeldb:243508 (no license), neuroalgebra.net (no license)

Status: code verified, 2 files readable

[20039] doi:10.1016/j.celrep.2025.115302 [paper]

Loss of the proton-activated chloride channel in neurons impairs AMPA receptor endocytosis and LTD via endosomal hyper-acidification.

Journal: Cell reports

Status: code on request

[20040] doi:10.1016/j.dcn.2025.101522 [paper, repository]

The structural covariance of reading-related brain regions in adults and children with typical or poor reading skills.

Journal: Developmental cognitive neuroscience

Authors' code: neuro-jena.github.io/software.html (no license)

Status: code verified

[20041] doi:10.1016/j.isci.2025.111991 [paper, repository]

Temporal-coherence induces binding of responses to sound sequences in ferret auditory cortex.

Journal: iScience

Authors' code: figshare 28266323 (CC-BY-4.0)

Status: code verified

[20042] doi:10.1016/j.isci.2025.112006 [paper]

Astrocyte-induced firing in primary afferent axons.

Journal: iScience

Status: code on request

[20043] doi:10.1016/j.isci.2025.112019 [paper, data]

Exploring ultraweak photon emissions as optical markers of brain activity.

Journal: iScience

Status: code on request, 1 dataset cited

[20044] doi:10.1038/s41398-025-03249-y [paper]

Suicidal risk is associated with hyper-connections in the frontal-parietal network in patients with depression.

Journal: Translational psychiatry

Status: code on request

[20045] doi:10.1038/s41467-025-56260-8 [paper, repository]

Atypical hippocampal excitatory neurons express and govern object memory.

Journal: Nature communications

Authors' code: figshare 223434 (CC-BY-4.0)

Status: empty repository

[20046] doi:10.1038/s41467-025-56641-z [paper, repository]

Dense, continuous membrane labeling and expansion microscopy visualization of ultrastructure in tissues.

Journal: Nature communications

Authors' code: WeisongZhao/Sparse-SIM (other), TAYmit/umExM (no license)

Status: code verified, 182 files readable

[20047] doi:10.1038/s41467-025-56850-6 [paper, repository]

Classification of psychedelics and psychoactive drugs based on brain-wide imaging of cellular c-Fos expression.

Journal: Nature communications

Authors' code: Kwan-Lab/HTR (no license), Kwan-Lab/aboharbdavoudian2025 (no license)

Status: code verified, 67 files readable, 20 matches

[20048] doi:10.1038/s41467-025-56880-0 [paper, repository]

Nuclear position controls the activity of cortical actomyosin networks powering simultaneous morphogenetic events.

Journal: Nature communications

Authors' code: f-nedelec/cytosim (GPL-3.0), RepositoryNR/Custom_Template_CytoSIM (no license)

Status: code verified, 745 files readable, 2 matches

[20049] doi:10.1038/s41586-024-08518-2 [paper, repository]

Transcriptomic neuron types vary topographically in function and morphology.

Journal: Nature

Authors' code: Zenodo 14146655 (CC-BY-4.0)

Status: code verified, 16 files readable, 6 matches

[20050] doi:10.1038/s41586-024-08533-3 [paper, repository]

Converging mechanism of UM171 and KBTBD4 neomorphic cancer mutations.

Journal: Nature

Authors' code: liaulab/KBTBD4_DMS_2024 (MIT)

Status: code verified, 4 files readable

[20051] doi:10.1038/s41586-024-08548-w [paper, repository]

Learning produces an orthogonalized state machine in the hippocampus.

Journal: Nature

Authors' code: winnubstj/Gimbl (no license), karpathy/minGPT (MIT), sprustonlab/OSM_Paper_Figures (BSD-3-Clause)

Status: code verified, 54 files readable, 25 matches

[20052] doi:10.1038/s41598-024-84510-0 [paper, repository]

Examining emotion reactivity to politically polarizing media in a randomized controlled trial of mindfulness training versus active coping training.

Journal: Scientific reports

Authors' code: naturalistic-data.org/content/intro.html (no license), OSF 68tx4 (no license)

Status: code verified

[20053] doi:10.1038/s41598-025-89088-9 [paper, repository]

Connectomic analysis of taste circuits in Drosophila.

Journal: Scientific reports

Authors' code: avdevineni/taste-connectome (no license), philshiu/Drosophila_brain_model (MIT)

Status: code verified, 10 files readable, 9 matches

[20054] doi:10.1038/s41746-025-01488-3 [paper, repository]

Benchmarking the diagnostic performance of open source LLMs in 1933 Eurorad case reports.

Journal: NPJ digital medicine

Authors' code: huggingface.co (no license), ai-idt/os_llm_eurorad (no license)

Status: code verified, 2 files readable, 2 matches

[20055] doi:10.1038/s42003-025-07646-3 [paper, repository]

Neural mechanisms of metacognitive improvement under speed pressure.

Journal: Communications biology

Authors' code: OSF cgxw6 (no license)

Status: code verified, 9 files readable, 2 matches

[20056] doi:10.1038/s43587-025-00810-8 [paper]

Soluble cerebral Aβ protofibrils link Aβ plaque pathology to changes in CSF Aβ&lt;sub&gt;42&lt;/sub&gt;/Aβ&lt;sub&gt;40&lt;/sub&gt; ratios, neurofilament light and tau in Alzheimer's disease model mice.

Journal: Nature aging

Status: code on request

[20057] doi:10.1073/pnas.2413797122 [paper, data]

Unequal resource division occurs in the absence of group division and identity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[20058] doi:10.1073/pnas.2422631122 [paper, data]

Impairment of DET1 causes neurological defects and lethality in mice and humans.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[20059] doi:10.1080/17435889.2025.2460228 [paper, data]

Dopamine stabilized in ultra-nanoreservoirs for controlled delivery in parkinson's disease.

Journal: Nanomedicine (London, England)

Status: code on request, 1 dataset cited

[20060] doi:10.1098/rspb.2024.3014 [paper, repository]

Touch inhibits cold: non-contact cooling suggests a thermotactile gating mechanism.

Journal: Proceedings. Biological sciences

Authors' code: OSF sv6eu (no license)

Status: code verified, 98 files readable, 3 matches

[20061] doi:10.1111/acel.14493 [paper, data]

Astrocytic Hevin/SPARCL-1 Regulates Cognitive Decline in Pathological and Normal Brain Aging.

Journal: Aging cell

Status: data only, 1 dataset cited

[20062] doi:10.1128/jvi.01679-24 [paper, data]

The antiviral BDGR-49 provides protection from lethal, neurotropic Venezuelan equine encephalitis virus intranasal infection in mice.

Journal: Journal of virology

Status: data only, 1 dataset cited

[20063] doi:10.1159/000543835 [paper, data]

Sex Differences in Clinical Presentation of Women and Men Evaluated at a Comprehensive Stroke Center for Suspected Stroke.

Journal: Cerebrovascular diseases extra

Status: data only, 1 dataset cited

[20064] doi:10.1186/s11689-025-09594-9 [paper, repository]

An exploratory fetal MRI study examining the impact of 22q11.2 microdeletion syndrome on early brain growth.

Journal: Journal of neurodevelopmental disorders

Authors' code: hub.docker.com/r/fetalsvrtk (no license)

Status: code verified

[20065] doi:10.1242/dev.204591 [paper, repository]

An in vivo CRISPR screen in chick embryos reveals a role for MLLT3 in specification of neural cells from the caudal epiblast.

Journal: Development (Cambridge, England)

Authors' code: aradley/Libby-A-2024 (no license), Libbya-crick/Libby-2024-CRISPy-Chickens (MIT)

Status: code verified, 9 files readable, 17 matches

[20066] doi:10.1371/journal.pone.0317183 [paper, data]

Monkeys can identify pictures from words.

Journal: PloS one

Status: data only, 1 dataset cited

[20067] doi:10.1523/eneuro.0025-24.2024 [paper, repository]

FAST: Fast, Free, Consistent, and Unsupervised Oligodendrocyte Segmentation and Tracking System.

Journal: eNeuro

Authors' code: PennSIVE/bossr (other)

Status: code verified, 26 files readable, 3 matches

[20068] doi:10.1523/eneuro.0375-24.2024 [paper, repository]

Functional Connectivity of the Scene Processing Network at Rest Does Not Reliably Predict Human Behavior on Scene Processing Tasks.

Journal: eNeuro

Authors' code: fsl.fmrib.ox.ac.uk/fsl/docs (no license)

Status: code verified

[20069] doi:10.3389/fncel.2025.1512591 [paper]

Direct effects of prolonged TNF-α and IL-6 exposure on neural activity in human iPSC-derived neuron-astrocyte co-cultures.

Journal: Frontiers in cellular neuroscience

Status: data only

[20070] doi:10.3389/fneur.2024.1439318 [paper, repository]

Trajectories of systemic immune inflammation index and mortality risk in patients with moderate-to-severe traumatic brain injury: a retrospective cohort study.

Journal: Frontiers in neurology

Authors' code: MIT-LCP/eicu-code (MIT)

Status: code verified, 33 files readable, 2 matches

[20071] doi:10.3389/fnins.2025.1476264 [paper, repository]

The influence of time and visualization on neurofeedback-guided parietal alpha downregulation and sense of presence in virtual reality.

Journal: Frontiers in neuroscience

Authors' code: chkothe/pylsl (MIT)

Status: code verified, 12 files readable, 1 match

[20072] doi:10.3389/fnins.2025.1538115 [paper, data]

Gestational diabetes induces autistic-like behaviors in offspring by disrupting the GABAergic system.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[20073] doi:10.3758/s13415-025-01267-3 [paper, data]

Common sources of linguistic conflict engage domain-general conflict control mechanisms during language comprehension.

Journal: Cognitive, affective & behavioral neuroscience

Status: data only, 1 dataset cited

[20074] doi:10.7554/elife.97029 [paper, data]

Cyclin-dependent kinase 5 (Cdk5) activity is modulated by light and gates rapid phase shifts of the circadian clock.

Journal: eLife

Status: data only, 1 dataset cited

[20075] doi:10.7554/elife.98152 [paper, repository]

SERBP1 interacts with PARP1 and is present in PARylation-dependent protein complexes regulating splicing, cell division, and ribosome biogenesis.

Journal: eLife

Authors' code: OSF 4ehzs (no license)

Status: code verified, 1 file readable

Tuesday, 11 February 2025 (32 papers)

[20076] doi:10.1007/s00330-025-11400-y [paper, repository]

The Cortical Asymmetry Index for subtyping dementia patients.

Journal: European radiology

Authors' code: Agnes2/CAI (MIT), python.org (no license)

Status: code verified, 3 files readable

[20077] doi:10.1016/j.celrep.2025.115292 [paper, repository]

Higher-order thalamic input to cortex selectively conveys state information.

Journal: Cell reports

Authors' code: cardin-higley-lab/CC_TC_Neske_Project (no license), Zenodo 13899503 (CC-BY-4.0)

Status: code verified, 886 files readable

[20078] doi:10.1016/j.celrep.2025.115313 [paper]

GABAergic neurons in the ventral tegmental area represent and regulate force vectors.

Journal: Cell reports

Status: code on request

[20079] doi:10.1016/j.isci.2025.111953 [paper, data]

KAT6B overexpression in mice causes aggression, anxiety, and epilepsy.

Journal: iScience

Status: data only, 1 dataset cited

[20080] doi:10.1016/j.isci.2025.111988 [paper, repository]

Neural architecture of social punishment: Insights from a queue-jumping scenario.

Journal: iScience

Authors' code: zzstefan/BrainNetClass (no license)

Status: code verified, 215 files readable, 7 matches

[20081] doi:10.1016/j.isci.2025.111994 [paper, data]

IQGAP2 regulates blood-brain barrier immune dynamics.

Journal: iScience

Status: code on request, 2 datasets cited

[20082] doi:10.1016/j.isci.2025.112001 [paper, repository]

Hierarchical organization of the forebrain cholinergic system in rats.

Journal: iScience

Authors' code: Zenodo 14588790 (CC-BY-4.0)

Status: code verified, 8 files readable, 3 matches

[20083] doi:10.1038/s41366-025-01730-8 [paper]

Associations between maternal pre-pregnancy BMI and mean diffusivity of the hippocampus and amygdala in infants.

Journal: International journal of obesity (2005)

Status: code on request

[20084] doi:10.1038/s41398-025-03260-3 [paper, repository]

Transcriptomic profiles link corticostriatal microarchitecture to genetics of neurodevelopment and neuropsychiatric risks.

Journal: Translational psychiatry

Authors' code: MezerLab/mrGrad (no license), BMHLab/AHBAprocessing (no license), KirstieJane/NSPN_WhitakerVertes_PNAS2016 (MIT)

Status: code verified, 463 files readable

[20085] doi:10.1038/s41467-024-52223-7 [paper, repository]

The spatiotemporal transcriptional profiling of murine brain during cerebral malaria progression and after artemisinin treatment.

Journal: Nature communications

Authors' code: YunmengBai777/CM_scRNA-ST-seq-code (GPL-3.0), Zenodo 12814376 (CC-BY-4.0)

Status: code verified, 30 files readable, 24 matches

[20086] doi:10.1038/s41467-024-55326-3 [paper, repository]

Multi-ancestry meta-analysis of genome-wide association studies discovers 67 new loci associated with chronic back pain.

Journal: Nature communications

Authors' code: rgcgithub.github.io/regenie (no license), statgen/METAL (BSD-2-Clause), bulik/ldsc (GPL-3.0), MRCIEU/TwoSampleMR (other)

Status: code verified, 196 files readable, 4 matches

[20087] doi:10.1038/s41467-025-56722-z [paper, data]

Accelerated epigenetic aging in Huntington's disease involves polycomb repressive complex 1.

Journal: Nature communications

Status: code on request, 1 dataset cited

[20088] doi:10.1038/s41467-025-56739-4 [paper, repository]

The neurobench framework for benchmarking neuromorphic computing algorithms and systems.

Journal: Nature communications

Authors' code: NeuroBench/neurobench (Apache-2.0), Zenodo 3773845 (CC-BY-4.0), Zenodo 14477064 (Apache-2.0)

Status: code verified, 124 files readable, 40 matches

[20089] doi:10.1038/s41467-025-56853-3 [paper, repository]

Human and mouse proteomics reveals the shared pathways in Alzheimer's disease and delayed protein turnover in the amyloidome.

Journal: Nature communications

Authors' code: abhijitju06/JUMPsilactmt-Version-0.0.1 (no license), abhijitju06/JUMPt-Version-1.0.0 (no license)

Status: code verified, 21 files readable, 2 matches

[20090] doi:10.1038/s41531-025-00872-w [paper, repository]

Mapping of catecholaminergic denervation, neurodegeneration, and inflammation in 6-OHDA-treated Parkinson's disease mice.

Journal: NPJ Parkinson's disease

Authors' code: b-heifets/unravel (GPL-3.0), Zenodo 13377341 (CC-BY-4.0)

Status: code verified, 531 files readable, 8 matches

[20091] doi:10.1038/s42003-025-07644-5 [paper, repository]

Inhibition of SCF&lt;sup&gt;KDM2A&lt;/sup&gt;/USP22-dependent nuclear β-catenin ubiquitylation mediates cerebral ischemic tolerance.

Journal: Communications biology

Authors' code: Zenodo 14708993 (MIT)

Status: code verified

[20092] doi:10.1088/1741-2552/adaa1f [paper, repository]

Using transient, effector-specific neural responses to gate decoding for brain-computer interfaces.

Journal: Journal of neural engineering

Authors' code: pitt-rnel/GatedDecoding (no license)

Status: code verified, 238 files readable, 1 match

[20093] doi:10.1093/braincomms/fcaf066 [paper, repository]

Distinct spatiotemporal atrophy patterns in corticobasal syndrome are associated with different underlying pathologies.

Journal: Brain communications

Authors' code: ucl-pond/pySuStaIn (MIT)

Status: code verified, 19 files readable

[20094] doi:10.1096/fba.2025-00025 [paper, data]

Inhibition of the Hippo pathway by verteporfin reduces the proliferation and stemness of rat hair follicle neural crest stem cells under hypoxia.

Journal: FASEB bioAdvances

Status: data only, 1 dataset cited

[20095] doi:10.1101/2025.02.10.637505 [paper, repository]

Molecularly-guided spatial proteomics captures single-cell identity of the healthy and diseased nervous system

Journal: bioRxiv (preprint)

Authors' code: gnaprs/scSP_CNS-preprint (MIT)

Status: code verified, 5 files readable, 2 matches

[20096] doi:10.1136/jitc-2024-009574 [paper, repository]

Pooled screening for CAR function identifies novel IL-13Rα2-targeted CARs for treatment of glioblastoma.

Journal: Journal for immunotherapy of cancer

Authors' code: birnbaumlab (no license), birnbaumlab/Gordon-et-al-2022 (no license)

Status: code verified, 48 files readable, 1 match

[20097] doi:10.1371/journal.pbio.3003012 [paper, data]

Repeated stress gradually impairs auditory processing and perception.

Journal: PLoS biology

Status: data only, 1 dataset cited

[20098] doi:10.1371/journal.pone.0306500 [paper, data]

Childhood brain morphometry in children with persistent stunting and catch-up growth.

Journal: PloS one

Status: data only, 1 dataset cited

[20099] doi:10.1371/journal.pone.0316543 [paper, data]

A privacy-preserved horizontal federated learning for malignant glioma tumour detection using distributed data-silos.

Journal: PloS one

Status: data only, 1 dataset cited

[20100] doi:10.1371/journal.pone.0318142 [paper, data]

Drosophila Topoisomerase 3β binds to mRNAs in vivo, contributes to their localization and stability, and counteracts premature aging.

Journal: PloS one

Status: data only, 1 dataset cited

[20101] doi:10.2147/ijwh.s508593 [paper, data]

Causal Links Between Brain Functional Networks and Endometriosis: A Large-Scale Genetic-Driven Observational Study.

Journal: International journal of women's health

Status: data only, 1 dataset cited

[20102] doi:10.26508/lsa.202403006 [paper, data]

Canonical and non-canonical PRC1 differentially contribute to regulation of neural stem cell fate.

Journal: Life science alliance

Status: data only, 1 dataset cited

[20103] doi:10.3389/fneur.2025.1462636 [paper, data]

Prediction models for cognitive impairment in middle-aged patients with cerebral small vessel disease.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[20104] doi:10.3389/fnhum.2024.1509432 [paper, repository]

Diagnostic ultrasound enhances, then reduces, exogenously induced brain activity of mice.

Journal: Frontiers in human neuroscience

Authors' code: cIiche/vis_stim (MIT), cIiche/vis_stim,repository (no license)

Status: code verified, 11 files readable

[20105] doi:10.3389/fonc.2025.1502405 [paper, data]

Co-modulation of a circular form of PCDH11Y during neuroendocrine differentiation of prostate cancer.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[20106] doi:10.3390/cimb47020118 [paper, data]

Exploring the Efficacy and Target Genes of <i>Atractylodes Macrocephala Koidz</i> Against Alzheimer's Disease Based on Multi-Omics, Computational Chemistry, and Experimental Verification.

Journal: Current issues in molecular biology

Status: data only, 1 dataset cited

[20107] doi:10.3390/ijms26041497 [paper, repository]

Non-Invasive Assessment of Neurogenesis Dysfunction in Fetuses with Early-Onset Growth Restriction Using Fetal Neuronal Exosomes Isolating from Maternal Blood: A Pilot Study.

Journal: International journal of molecular sciences

Authors' code: r-project.org (no license)

Status: code verified

Monday, 10 February 2025 (37 papers)

[20108] doi:10.1002/2211-5463.70000 [paper, data]

A potential tumor suppressor role of PLK2 in glioblastoma.

Journal: FEBS open bio

Status: data only, 1 dataset cited

[20109] doi:10.1002/mds.30143 [paper, repository]

The Pattern and Stages of Atrophy in Spinocerebellar Ataxia Type 2: Volumetrics from ENIGMA-Ataxia.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: HardingLab/enigma-ataxia (no license)

Status: dead link

[20110] doi:10.1016/j.bja.2024.12.036 [paper]

Connectome harmonic decomposition tracks the presence of disconnected consciousness during ketamine-induced unresponsiveness.

Journal: British journal of anaesthesia

Status: code on request

[20111] doi:10.1016/j.cub.2024.08.059 [paper, repository]

A systems model of alternating theta sweeps via firing rate adaptation.

Journal: Current biology : CB

Authors' code: brainpy/BrainPy (GPL-3.0), Eden-Kramer-Lab/replay_trajectory_classification (MIT), ZilongJi/GridCellThetaSweeps (no license)

Status: code verified, 640 files readable, 6 matches

[20112] doi:10.1016/j.isci.2025.111993 [paper]

Coding of egocentric distance in the macaque ventral intraparietal area.

Journal: iScience

Status: code on request

[20113] doi:10.1016/j.nbd.2025.106837 [paper, repository]

Impairment in the homeostatic recruitment of layer 5/6 neurons following whisker stimulation in Fmr1 KO mice.

Journal: Neurobiology of disease

Authors' code: lakhanialishah/WhiskerAnalysis (no license)

Status: code verified, 25 files readable, 7 matches

[20114] doi:10.1017/s1366728924001093 [paper, data]

Semantic processing of iconic signs is not automatic: Neural evidence from hearing non-signers.

Journal: Bilingualism (Cambridge, England)

Status: data only, 1 dataset cited

[20115] doi:10.1038/s41380-025-02907-3 [paper, repository]

Gestational autoantibody exposure impacts early brain development in a rat model of MAR autism.

Journal: Molecular psychiatry

Authors' code: nordneurogenomicslab/publications (no license)

Status: code verified, 14 files readable, 3 matches

[20116] doi:10.1038/s41467-025-56670-8 [paper, repository]

Breakage fusion bridge cycles drive high oncogene number with moderate intratumoural heterogeneity.

Journal: Nature communications

Authors' code: poloxu/CSE280A_BFBSimulator (no license), siavashre/OM2BFB (BSD-2-Clause), shay-zakov/BFBFinder (no license)

Status: code verified, 48 files readable, 2 matches

[20117] doi:10.1038/s41467-025-56793-y [paper, repository]

A neuronal code for object representation and memory in the human amygdala and hippocampus.

Journal: Nature communications

Authors' code: OSF 6fr3j (no license)

Status: empty repository

[20118] doi:10.1038/s41565-024-01851-7 [paper, data]

Customizable virus-like particles deliver CRISPR-Cas9 ribonucleoprotein for effective ocular neovascular and Huntington's disease gene therapy.

Journal: Nature nanotechnology

Status: data only, 2 datasets cited

[20119] doi:10.1038/s41591-024-03400-0 [paper, data]

Phospho-tau serine-262 and serine-356 as biomarkers of pre-tangle soluble tau assemblies in Alzheimer's disease.

Journal: Nature medicine

Status: data only, 1 dataset cited

[20120] doi:10.1038/s41593-025-01869-7 [paper, repository]

Latent circuit inference from heterogeneous neural responses during cognitive tasks.

Journal: Nature neuroscience

Authors' code: ini.uzh.ch/en/research (no license), engellab/latentcircuit (MIT), Zenodo 14020108 (CC-BY-4.0)

Status: code verified, 28 files readable, 5 matches

[20121] doi:10.1038/s41593-025-01874-w [paper, repository]

A thalamic hub-and-spoke network enables visual perception during action by coordinating visuomotor dynamics.

Journal: Nature neuroscience

Authors' code: joesch-lab/vLGN_SC (GPL-3.0)

Status: code verified, 82 files readable, 11 matches

[20122] doi:10.1038/s41594-025-01485-w [paper, repository]

Uncovering protein glycosylation dynamics and heterogeneity using deep quantitative glycoprofiling (DQGlyco).

Journal: Nature structural & molecular biology

Authors' code: miralea/DQGlyco (no license), Zenodo 14443693 (CC-BY-4.0)

Status: code verified, 47 files readable, 21 matches

[20123] doi:10.1038/s41598-024-81618-1 [paper, repository]

Variations of autonomic arousal mediate the reportability of mind blanking occurrences.

Journal: Scientific reports

Authors' code: gitlab.uliege.be/paradeisios.boulakis/mind_blanking_arousal (no license)

Status: code verified, 58 files readable, 10 matches

[20124] doi:10.1038/s41598-025-89242-3 [paper, data]

Improved image reconstruction from brain activity through automatic image captioning.

Journal: Scientific reports

Status: data only, 1 dataset cited

[20125] doi:10.1038/s41598-025-89334-0 [paper, data]

Gene network analysis identifies dysregulated pathways in an autism spectrum disorder caused by mutations in Transcription Factor 4.

Journal: Scientific reports

Status: data only, 2 datasets cited

[20126] doi:10.1038/s41746-025-01444-1 [paper, repository]

Digital twin brain simulator for real-time consciousness monitoring and virtual intervention using primate electrocorticogram data.

Journal: NPJ digital medicine

Authors' code: h-idei/pvrnn_sa (Apache-2.0)

Status: code verified, 21 files readable

[20127] doi:10.1073/pnas.2420324122 [paper, data]

Astrocytic EphA4 signaling is important for the elimination of excitatory synapses in Alzheimer's disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[20128] doi:10.1073/pnas.2421772122 [paper, data]

Double assurance in the induction of axial development by egg dorsal determinants in <i>Xenopus</i> embryos.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[20129] doi:10.1093/pnasnexus/pgaf015 [paper, repository]

Typical and disrupted small-world architecture and regional communication in full-term and preterm infants.

Journal: PNAS nexus

Authors' code: huiqinghu/Graph-theory_Infant-project (no license)

Status: code verified, 3 files readable

[20130] doi:10.1111/febs.70018 [paper, data]

Molecular mechanisms of hotspot variants in cytoskeletal β-actin associated with Baraitser-Winter syndrome.

Journal: The FEBS journal

Status: data only, 4 datasets cited

[20131] doi:10.1155/bmri/3585125 [paper, data]

Unlocking Dreams and Dreamless Sleep: Machine Learning Classification With Optimal EEG Channels.

Journal: BioMed research international

Status: data only, 1 dataset cited

[20132] doi:10.1162/imag_a_00447 [paper, repository]

Complementary benefits of multivariate and hierarchical models for identifying individual differences in cognitive control.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 6p3en (no license), hub.docker.com/u/ccplabwustl (no license), mcfreund/trr (MIT), Zenodo 14048490 (CC-BY-4.0)

Status: code verified, 37 files readable, 5 matches

[20133] doi:10.1186/s10194-025-01969-6 [paper, repository]

Uncovering longitudinal changes in the brain functional connectome along the migraine cycle: a multilevel clinical connectome fingerprinting framework.

Journal: The journal of headache and pain

Authors' code: martaxavier/fMRI-Preprocessing (no license), isesteves/multilevel-fingerprinting_migraine (no license)

Status: code verified, 81 files readable, 12 matches

[20134] doi:10.1186/s12974-025-03353-2 [paper, data]

Inflammatory responses revealed through HIV infection of microglia-containing cerebral organoids.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[20135] doi:10.1186/s12987-025-00627-y [paper, data]

Choroid plexus organoids reveal mechanisms of Streptococcus suis translocation at the blood-cerebrospinal fluid barrier.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[20136] doi:10.1186/s13041-025-01180-3 [paper, data]

Changes in the pH value of the human brain in Alzheimer's disease pathology correlated with CD68-positive microglia: a community-based autopsy study in Beijing, China.

Journal: Molecular brain

Status: data only, 3 datasets cited

[20137] doi:10.1186/s13075-025-03489-9 [paper, data]

Proteomic profiling of human plasma and intervertebral disc tissue reveals matrisomal, but not plasma, biomarkers of disc degeneration.

Journal: Arthritis research & therapy

Status: data only, 2 datasets cited

[20138] doi:10.1371/journal.pcbi.1012811 [paper, data]

Computational mechanism underlying switching of motor actions.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[20139] doi:10.1523/eneuro.0045-24.2024 [paper]

Cortical HFS-Induced Neo-Hebbian Local Plasticity Enhances Efferent Output Signal and Strengthens Afferent Input Connectivity.

Journal: eNeuro

Status: code on request

[20140] doi:10.3389/frai.2025.1506074 [paper, repository]

Dual feature-based and example-based explanation methods.

Journal: Frontiers in artificial intelligence

Authors' code: Kozlov992/Dual-Explanation (no license)

Status: code verified, 15 files readable, 2 matches

[20141] doi:10.7150/ijbs.101930 [paper, data]

Mitochondrial Localization and Function of Adenosine Receptors.

Journal: International journal of biological sciences

Status: data only, 1 dataset cited

[20142] doi:10.7150/thno.104143 [paper, data]

Glioblastoma progression is hindered by melatonin-primed mesenchymal stromal cells through dynamic intracellular and extracellular reorganizations.

Journal: Theranostics

Status: data only, 1 dataset cited

[20143] doi:10.7554/elife.95398 [paper, repository]

Multimodal mismatch responses in mouse auditory cortex.

Journal: eLife

Authors' code: Zenodo 14193759 (CC-BY-4.0)

Status: code verified

[20144] doi:10.7554/elife.98521 [paper, repository]

Decoding the physics of observed actions in the human brain.

Journal: eLife

Authors' code: OSF am346 (no license)

Status: empty repository

Sunday, 9 February 2025 (3 papers)

[20145] doi:10.1007/s12672-025-01916-6 [paper]

Identification of mitophagy-related genes impacting patient survival in glioma.

Journal: Discover oncology

Status: data only

[20146] doi:10.1038/s41598-025-88579-z [paper, repository]

Flexible and cost-effective deep learning for accelerated multi-parametric relaxometry using phase-cycled bSSFP.

Journal: Scientific reports

Authors' code: s2quare/FastRelax-DL (MIT)

Status: code verified, 22 files readable, 11 matches

[20147] doi:10.1113/jp287643 [paper, repository]

Photoreceptor degeneration has heterogeneous effects on functional retinal ganglion cell types.

Journal: The Journal of physiology

Authors' code: datajoint.github.io (no license), eulerlab/rd10_rgc (MIT), doi:10.12751/g-node.89z5px (no license)

Status: code verified, 11 files readable, 1 match

Saturday, 8 February 2025 (16 papers, 13 on this page)

[20148] doi:10.1007/s11033-025-10311-x [paper, data]

Single-cell sequencing reveals that AK5 inhibits apoptosis in AD oligodendrocytes by regulating the AMPK signaling pathway.

Journal: Molecular biology reports

Status: data only, 1 dataset cited

[20149] doi:10.1016/j.celrep.2025.115293 [paper, data]

Delta opioid receptors engage multiple signaling cascades to differentially modulate prefrontal GABA release with input and target specificity.

Journal: Cell reports

Status: code on request, 1 dataset cited

[20150] doi:10.1016/j.dcn.2025.101518 [paper, repository]

Longitudinal analysis of the ABCD® study.

Journal: Developmental cognitive neuroscience

Authors' code: longitudinal.dev (no license), cmig-research-group/cmig_tools (other), OpenDevSci/LongDev-ABCD (no license)

Status: code verified, 261 files readable, 1 match

[20151] doi:10.1038/s41598-024-84988-8 [paper, data]

Neurocognitive dynamics and behavioral differences of symmetry and asymmetry processing in working memory: insights from fNIRS.

Journal: Scientific reports

Status: data only, 1 dataset cited

[20152] doi:10.1038/s41598-025-88623-y [paper, data]

Using insecticidal compounds to elucidate the potential role of neurotransmitters in Lepidoptera pupal ecdysis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[20153] doi:10.1093/braincomms/fcaf056 [paper, repository]

Spikes on ripples are better interictal biomarkers of epilepsy than spikes or ripples.

Journal: Brain communications

Authors' code: LorenzoFabbri95/SpikesOnRipples (MIT)

Status: code verified, 16 files readable, 5 matches

[20154] doi:10.1093/sleepadvances/zpaf009 [paper]

Tonic-clonic seizures induce hypersomnia and suppress rapid eye movement sleep in mouse models of epilepsy.

Journal: Sleep advances : a journal of the Sleep Research Society

Status: code on request

[20155] doi:10.1101/2025.02.07.637112 [paper]

Functional Connectivity Shapes Spine Stability in the Hippocampus

Journal: bioRxiv (preprint)

Status: code on request

[20156] doi:10.1136/bmjsem-2024-001904 [paper, data]

Performance of current tools used for on-the-day assessment and diagnosis of mild traumatic brain injury in sport: a systematic review.

Journal: BMJ open sport & exercise medicine

Status: data only, 1 dataset cited

[20157] doi:10.1161/jaha.124.037930 [paper, repository]

Spatial Correlates of Dementia and Disability After Intracerebral Hemorrhage.

Journal: Journal of the American Heart Association

Authors' code: Yutong441/FICHnet (no license), Yutong441/ICHmap (no license)

Status: code verified, 49 files readable, 3 matches

[20158] doi:10.1186/s12874-025-02487-4 [paper, data]

A generative model for evaluating missing data methods in large epidemiological cohorts.

Journal: BMC medical research methodology

Status: data only, 2 datasets cited

[20159] doi:10.1186/s13024-025-00805-4 [paper, data]

The transcription factor combination MEF2 and KLF7 promotes axonal sprouting in the injured spinal cord with functional improvement and regeneration-associated gene expression.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[20160] doi:10.1186/s40001-025-02297-w [paper]

Bioinformatics insights into mitochondrial and immune gene regulation in Alzheimer's disease.

Journal: European journal of medical research

Status: data only

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