Every paper, by date: page 89

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 89 of 200: 25 February 2025 to 17 February 2025.

Tuesday, 25 February 2025 (26 papers, 6 on this page)

[19713] doi:10.26508/lsa.202403029 [paper, repository]

Unraveling ADHD: genes, co-occurring traits, and developmental dynamics.

Journal: Life science alliance

Authors' code: Genome3d/multimorbid3D (no license), Catriona-Miller/ADHD_Co-occurring_Traits (no license)

Status: code verified, 23 files readable, 2 matches

[19714] doi:10.3389/fimmu.2025.1469737 [paper, data]

PKR modulates sterile systemic inflammation-triggered neuroinflammation and brain glucose metabolism disturbances.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[19715] doi:10.3390/children12030278 [paper, repository]

Visual Cortical Processing in Children with Early Bilateral Cochlear Implants: A VEP Analysis.

Journal: Children (Basel, Switzerland)

Authors' code: mathworks.com/products/matlab.html (no license)

Status: code found, still to be checked

[19716] doi:10.3390/genes16030278 [paper, data]

Sustained Epigenetic Reactivation in Fragile X Neurons with an RNA-Binding Small Molecule.

Journal: Genes

Status: data only, 1 dataset cited

[19717] doi:10.3390/s25051399 [paper, data]

Hybrid CNN-GRU Models for Improved EEG Motor Imagery Classification.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[19718] doi:10.3390/toxics13030157 [paper, repository]

Subject-Specific Mapping of Excess Manganese Accumulation in the Brain of Welders Using Magnetic Resonance Imaging Relaxometry.

Journal: Toxics

Authors' code: mjt320/HIFI (GPL-3.0)

Status: code verified, 11 files readable, 2 matches

Monday, 24 February 2025 (30 papers)

[19719] doi:10.1002/aur.70010 [paper, repository]

Altered Patterns of Dynamic Functional Connectivity Underpin Reduced Expressions of Social-Emotional Reciprocity in Autistic Adults.

Journal: Autism research : official journal of the International Society for Autism Research

Authors' code: OSF z7v5k (no license)

Status: code found, still to be checked

[19720] doi:10.1007/s10162-025-00977-2 [paper]

The Inner Ear and Aging Brain: A Cross-Sectional Study of Vestibular Function and Morphometric Variations in the Entorhinal and Trans-Entorhinal Cortex.

Journal: Journal of the Association for Research in Otolaryngology : JARO

Status: code on request

[19721] doi:10.1016/j.brs.2025.02.018 [paper, repository]

Repetitive transcranial magnetic stimulation modulates brain connectivity in children with self-limited epilepsy with centrotemporal spikes.

Journal: Brain stimulation

Authors' code: Pediatric-Neurostimulation-Laboratory/rTMSConnectivity (no license)

Status: code verified, 13 files readable, 1 match

[19722] doi:10.1016/j.xpro.2025.103639 [paper, repository]

Protocol for performing 3D-STORM-based nanoscale organization of NMDA receptors in hippocampal brain tissue.

Journal: STAR protocols

Authors' code: flevet/SR-Tesseler (no license)

Status: code verified, 45 files readable

[19723] doi:10.1021/acschemneuro.4c00799 [paper, repository]

SeroWare: An Open-Source Software Suite for Voltammetry Data Acquisition and Analysis.

Journal: ACS chemical neuroscience

Authors' code: csmova/SeroWare (LGPL-2.1), csmova/SeroML (no license)

Status: code verified, 15 files readable, 2 matches

[19724] doi:10.1038/s41380-025-02927-z [paper, repository]

Polygenic scores for autism are associated with reduced neurite density in adults and children from the general population.

Journal: Molecular psychiatry

Authors' code: rondolab/MR-PRESSO (no license), ucam-department-of-psychiatry/UKB (GPL-3.0), ucam-department-of-psychiatry/ABCD (no license), getian107/PRScs (MIT), bulik/ldsc (GPL-3.0), ucam-department-of-psychiatry/maps_and_parcs (no license), yg330/autism.img-pgs (no license)

Status: code verified, 132 files readable, 10 matches

[19725] doi:10.1038/s41467-025-57032-0 [paper, repository]

Individual bioenergetic capacity as a potential source of resilience to Alzheimer's disease.

Journal: Nature communications

Authors' code: compneurobio/bioenergetic_capacity (GPL-3.0)

Status: code verified, 12 files readable, 14 matches

[19726] doi:10.1038/s41467-025-57230-w [paper, repository]

Cortical representations of affective pain shape empathic fear in male mice.

Journal: Nature communications

Authors' code: figshare 28087742 (CC-BY-4.0)

Status: code verified

[19727] doi:10.1038/s41593-025-01878-6 [paper, data]

Astrocyte heterogeneity reveals region-specific astrogenesis in the white matter.

Journal: Nature neuroscience

Status: code on request, 1 dataset cited

[19728] doi:10.1038/s41598-025-88778-8 [paper, repository]

The effect of individual visual sensitivity on time perception.

Journal: Scientific reports

Authors' code: OSF bf3rc (no license)

Status: code verified, 1 file readable, 4 matches

[19729] doi:10.1038/s41598-025-90972-7 [paper]

Super-resolution mapping of anisotropic tissue structure with diffusion MRI and deep learning.

Journal: Scientific reports

Status: code on request

[19730] doi:10.1038/s42003-025-07711-x [paper, repository]

Tensor-powered insights into neural dynamics.

Journal: Communications biology

Authors' code: weightwater/LS-STM (no license)

Status: dead link

[19731] doi:10.1038/s44271-025-00214-9 [paper, repository]

Perceptual and semantic maps in individual humans share structural features that predict creative abilities.

Journal: Communications psychology

Authors' code: doi:10.12751/g-node.757evj (no license)

Status: code verified

[19732] doi:10.1073/pnas.2408079122 [paper, data]

Robust encoding of stimulus-response mapping by neurons in visual cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[19733] doi:10.1073/pnas.2413442122 [paper, repository]

Deep learning to quantify the pace of brain aging in relation to neurocognitive changes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: irimia-laboratory/USC_BA_estimator (other), ha-ha-hahan/UKBiobank_deep_pretrain (no license)

Status: code verified, 8 files readable, 1 match

[19734] doi:10.1111/nph.70010 [paper, repository]

HalALMT1 mediates malate efflux in the cortex of mature cluster rootlets of Hakea laurina, occurring naturally in severely phosphorus-impoverished soil.

Journal: The New phytologist

Authors' code: COMBINE-lab/salmon (BSD-3-Clause)

Status: code verified, 95 files readable, 1 match

[19735] doi:10.1162/imag_a_00479 [paper]

Intracranial EEG referencing for large-scale category-selective mapping in the human ventral occipito-temporal cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[19736] doi:10.1162/imag_a_00485 [paper, repository]

Magnitude processing and integration entail perceptual processes independent from the task.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF sn9h8 (no license)

Status: code verified, 14 files readable

[19737] doi:10.1172/jci.insight.183327 [paper, data]

CD4+ T cell-innate immune crosstalk is critical during Staphylococcus aureus craniotomy infection.

Journal: JCI insight

Status: data only, 1 dataset cited

[19738] doi:10.1186/s10020-025-01136-2 [paper, data]

CPEB3 can regulate seizure susceptibility by inhibiting the transcriptional activity of STAT3 on NMDARs expression.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 1 dataset cited

[19739] doi:10.1186/s12974-024-03322-1 [paper, repository]

RGS10 attenuates systemic immune dysregulation induced by chronic inflammatory stress.

Journal: Journal of neuroinflammation

Authors' code: Zenodo 13984272 (CC-BY-4.0)

Status: code verified, 1 file readable

[19740] doi:10.1186/s12974-025-03382-x [paper, data]

THBS1 in macrophage-derived exosomes exacerbates cerebral ischemia-reperfusion injury by inducing ferroptosis in endothelial cells.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[19741] doi:10.1186/s13229-025-00647-3 [paper, repository]

Exploring EEG resting state differences in autism: sparse findings from a large cohort.

Journal: Molecular autism

Authors' code: adede1988/SheffieldAutismBiomarkers (no license)

Status: code verified, 34 files readable, 4 matches

[19742] doi:10.1186/s40001-025-02386-w [paper, data]

The U-shaped relationship between serum osmolality and in-hospital mortality in patients with traumatic brain injury: a retrospective study based on the MIMIC-IV database.

Journal: European journal of medical research

Status: data only, 1 dataset cited

[19743] doi:10.1371/journal.pone.0316165 [paper]

Longitudinal healthcare use after pediatric brain injury: A population-based birth cohort study.

Journal: PloS one

Status: code on request

[19744] doi:10.1371/journal.pone.0317193 [paper, data]

Evaluation of stroke sequelae and rehabilitation effect on brain tumor by neuroimaging technique: A comparative study.

Journal: PloS one

Status: data only, 1 dataset cited

[19745] doi:10.1371/journal.pone.0318932 [paper, data]

The link between impact-induced tensile strain and dendritic spine morphology in porcine brain tissue.

Journal: PloS one

Status: data only, 1 dataset cited

[19746] doi:10.3389/fnbeh.2025.1513655 [paper, repository]

Vagal heart rate variability during rapid eye movement sleep reduces negative memory bias.

Journal: Frontiers in behavioral neuroscience

Authors' code: MednickLab/GenericMemoryTask (no license)

Status: code verified, 24 files readable

[19747] doi:10.3390/ijms26051947 [paper]

SERPINA3: A Novel Therapeutic Target for Diabetes-Related Cognitive Impairment Identified Through Integrated Machine Learning and Molecular Docking Analysis.

Journal: International journal of molecular sciences

Status: data only

[19748] doi:10.7554/elife.105446 [paper, repository]

Chronic RNA G-quadruplex accumulation in aging and Alzheimer's disease.

Journal: eLife

Authors' code: OSF bv8fp (no license)

Status: empty repository

Sunday, 23 February 2025 (6 papers)

[19749] doi:10.1016/j.nicl.2025.103755 [paper, repository]

Reshaped functional connectivity gradients in acute ischemic stroke.

Journal: NeuroImage. Clinical

Authors' code: JoanSano/BIDS_Constructor (no license), KobaCemal/StrokeGradients (no license)

Status: code verified, 13 files readable, 1 match

[19750] doi:10.1038/s41467-025-57220-y [paper, repository]

Memorability of novel words correlates with anterior fusiform activity during reading.

Journal: Nature communications

Authors' code: OSF dfvjy (no license)

Status: code verified, 1 file readable, 1 match

[19751] doi:10.1038/s41539-025-00299-1 [paper, data]

Level of M1 GABAB predicts micro offline consolidation of motor learning during wakefulness.

Journal: NPJ science of learning

Status: code on request, 1 dataset cited

[19752] doi:10.1038/s41539-025-00303-8 [paper, data]

The influence of task and interpersonal interdependence on cooperative behavior and its neural mechanisms.

Journal: NPJ science of learning

Status: code on request, 1 dataset cited

[19753] doi:10.1038/s41598-024-79349-4 [paper, data]

Immunoglobulin superfamily 3 (Igsf3) function is dispensable for brain development.

Journal: Scientific reports

Status: data only, 1 dataset cited

[19754] doi:10.1038/s41598-025-90925-0 [paper, data]

Neuroprotective mitochondria targeted small molecule restores synapses and the distribution of synaptic mitochondria in the hippocampus of APP/PS1 mice.

Journal: Scientific reports

Status: data only, 1 dataset cited

Saturday, 22 February 2025 (15 papers)

[19755] doi:10.1002/ana.27196 [paper, repository]

Regional Cerebral Atrophy Contributes to Personalized Survival Prediction in Amyotrophic Lateral Sclerosis: A Multicentre, Machine Learning, Deformation-Based Morphometry Study.

Journal: Annals of neurology

Authors' code: VANDAlab/Preprocessing_Pipeline (no license), BIC-MNI/minc-tools (other)

Status: code verified, 306 files readable, 2 matches

[19756] doi:10.1007/s00018-025-05601-3 [paper, data]

Aminophylline targets miR-128-3p/Slc7a11 axis to attenuate neuronal ferroptosis after traumatic brain injury.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[19757] doi:10.1016/j.ebiom.2025.105614 [paper, repository]

Altered spatiotemporal brain dynamics of interoception in behavioural-variant frontotemporal dementia.

Journal: EBioMedicine

Authors' code: OSF h9pse (no license)

Status: code verified, 16 files readable, 2 matches

[19758] doi:10.1016/j.isci.2025.112075 [paper, data]

HIV-1 Tat protein alters medial prefrontal cortex neuronal activity and recognition memory.

Journal: iScience

Status: code on request, 1 dataset cited

[19759] doi:10.1016/j.omtn.2025.102496 [paper, data]

CAG-targeted brain-permeable therapy tested in biallelic humanized polyQ mouse models.

Journal: Molecular therapy. Nucleic acids

Status: data only, 1 dataset cited

[19760] doi:10.1038/s41380-025-02929-x [paper, data]

YY1 mutations disrupt corticogenesis through a cell type specific rewiring of cell-autonomous and non-cell-autonomous transcriptional programs.

Journal: Molecular psychiatry

Status: code on request, 2 datasets cited

[19761] doi:10.1038/s41597-025-04624-6 [paper, data]

Iranian 6-11 years age population-based EEG, ERP, and cognition dataset.

Journal: Scientific data

Status: data only, 2 datasets cited

[19762] doi:10.1038/s41598-025-90578-z [paper, repository]

Identification of UBE2N as a biomarker of Alzheimer's disease by combining WGCNA with machine learning algorithms.

Journal: Scientific reports

Authors' code: Zenodo 14854728 (CC-BY-4.0)

Status: code verified, 1 file readable

[19763] doi:10.1038/s42003-025-07680-1 [paper, repository]

Female mice exhibit resistance to disease progression despite early pathology in a transgenic mouse model inoculated with alpha-synuclein fibrils.

Journal: Communications biology

Authors' code: CoBrALab/cobra-nmf (no license), Zenodo 14655729 (CC-BY-4.0), CoBrALab (no license)

Status: code verified, 30 files readable, 7 matches

[19764] doi:10.1038/s42003-025-07736-2 [paper, data]

Aberrant choroid plexus formation drives the development of treatment-related brain toxicity.

Journal: Communications biology

Status: data only, 2 datasets cited

[19765] doi:10.1038/s42003-025-07750-4 [paper, repository]

Predicted action-effects shape action representation through pre-activation of alpha oscillations.

Journal: Communications biology

Authors' code: OSF qvx8w (no license)

Status: code verified, 6 files readable, 3 matches

[19766] doi:10.1186/s11689-024-09586-1 [paper, data]

Differences in sleep EEG coherence and spindle metrics in toddlers with and without receptive/expressive language delay: a prospective observational study.

Journal: Journal of neurodevelopmental disorders

Status: data only, 1 dataset cited

[19767] doi:10.1186/s40359-025-02482-w [paper]

Increasing the smoking cessation success rate by enhancing improvement of self-control through sleep-amplified memory consolidation: protocol of a randomized controlled, functional magnetic resonance study.

Journal: BMC psychology

Status: code on request

[19768] doi:10.3390/e27030226 [paper, data]

Dynamic Evolution of EEG Complexity in Schizophrenia Across Cognitive Tasks.

Journal: Entropy (Basel, Switzerland)

Status: data only, 2 datasets cited

[19769] doi:10.3390/ijms26051895 [paper, data]

Changes in Mitochondrial Transcriptional Rhythms and Depression-like Behavior in the Hippocampus of IL-33-Overexpressing Mice.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 21 February 2025 (46 papers)

[19770] doi:10.1002/imt2.70006 [paper, data]

Time-restricted feeding mitigates Alzheimer's disease-associated cognitive impairments via a <i>B. pseudolongum</i>-propionic acid-FFAR3 axis.

Journal: iMeta

Status: data only, 2 datasets cited

[19771] doi:10.1007/s42113-025-00237-9 [paper, repository]

What's Surprising About Surprisal.

Journal: Computational brain & behavior

Authors' code: sslaats/surprisal (no license)

Status: code verified, 15 files readable

[19772] doi:10.1016/j.cub.2025.01.050 [paper]

Sleep-wake-related changes in intracellular chloride regulate plasticity at glutamatergic cortical synapses.

Journal: Current biology : CB

Status: code on request

[19773] doi:10.1016/j.isci.2025.112079 [paper, repository]

Genetic modulation of protein expression in rat brain.

Journal: iScience

Authors' code: Zenodo 14047911 (CC-BY-4.0), JUMPSuite/JUMP (no license), genetics-statistics/GEMMA (GPL-3.0), cran/coloc (no license), vdemichev/diann (other), Zenodo 13629309 (MIT), waveygang/wfmash (MIT)

Status: code verified, 930 files readable, 7 matches

[19774] doi:10.1016/j.neuroimage.2025.121098 [paper]

Age and gender-related patterns of arterial transit time and cerebral blood flow in healthy adults.

Journal: NeuroImage

Status: code on request

[19775] doi:10.1016/j.nicl.2025.103761 [paper, repository]

Hypoperfusion regions linked to National Institutes of Health Stroke Scale scores in acute stroke.

Journal: NeuroImage. Clinical

Authors' code: alexteghipco/CTPerfusionPipeline (BSD-2-Clause)

Status: code verified, 7 files readable, 2 matches

[19776] doi:10.1016/j.xgen.2025.100774 [paper, repository]

Deep learning imputes DNA methylation states in single cells and enhances the detection of epigenetic alterations in schizophrenia.

Journal: Cell genomics

Authors' code: LieberInstitute/scMeformer (no license), yuzhong-deng/graphcpg (MIT), gdewael/cpg-transformer (MIT), cangermueller/deepcpg (MIT), JxTang-bioinformatics/CaMelia (MIT), yupenghe/methylpy (Apache-2.0), bulik/ldsc (GPL-3.0), cemba-data.readthedocs.io (no license), brianhie/scanorama (MIT), YuLab-SMU/clusterProfiler (no license)

Status: code verified, 300 files readable, 12 matches

[19777] doi:10.1016/j.xpro.2025.103602 [paper]

Protocol to study the neural mechanism of music therapy in alleviating depression using EEG-LFP signal recording.

Journal: STAR protocols

Status: code on request

[19778] doi:10.1016/j.xpro.2025.103650 [paper, repository]

Protocol to perform offline ECoG brain-to-text decoding for natural tonal sentences.

Journal: STAR protocols

Authors' code: yuanningli/tonal_BCI_decoding (no license), Zenodo 13893640 (CC-BY-4.0)

Status: code verified, 20 files readable, 15 matches

[19779] doi:10.1038/s41380-025-02897-2 [paper]

Resting-state fMRI reveals altered functional connectivity associated with resilience and susceptibility to chronic social defeat stress in mouse brain.

Journal: Molecular psychiatry

Status: code on request

[19780] doi:10.1038/s41467-025-57050-y [paper, repository]

Intra-somatosensory cortical circuits mediating pain-induced analgesia.

Journal: Nature communications

Authors' code: mukamel-lab/CellSort (no license), zivlab/CellReg (GPL-2.0)

Status: code verified, 72 files readable, 1 match

[19781] doi:10.1038/s41467-025-57080-6 [paper]

Cerebellar output neurons can impair non-motor behaviors by altering development of extracerebellar connectivity.

Journal: Nature communications

Status: code on request

[19782] doi:10.1038/s41565-025-01867-7 [paper, data]

Systemic HER3 ligand-mimicking nanobioparticles enter the brain and reduce intracranial tumour growth.

Journal: Nature nanotechnology

Status: data only, 3 datasets cited

[19783] doi:10.1038/s41594-025-01493-w [paper, data]

Structural insights into how DEK nucleosome binding facilitates H3K27 trimethylation in chromatin.

Journal: Nature structural & molecular biology

Status: data only, 3 datasets cited

[19784] doi:10.1038/s41597-025-04618-4 [paper, repository]

Lower limb motor imagery EEG dataset based on the multi-paradigm and longitudinal-training of stroke patients.

Journal: Scientific data

Authors' code: NeuroTechX/moabb (BSD-3-Clause)

Status: code verified, 310 files readable, 13 matches

[19785] doi:10.1038/s41598-025-88238-3 [paper, repository]

Machine learning based seizure classification and digital biosignal analysis of ECT seizures.

Journal: Scientific reports

Authors' code: maxkayser/ectmetrics (CC-BY-NC-4.0), Zenodo 14743374 (CC-BY-NC-4.0)

Status: code verified, 47 files readable, 3 matches

[19786] doi:10.1038/s41598-025-88381-x [paper, repository]

Low-frequency tremor-like episodes before the 2023 M_W 7.8 Türkiye earthquake linked to cement quarrying.

Journal: Scientific reports

Authors' code: ZahraZali/AutoencoderZ (MIT)

Status: code verified, 3 files readable

[19787] doi:10.1038/s41598-025-90277-9 [paper, data]

Association of genetic risk of Alzheimer's disease and cognitive function in two European populations.

Journal: Scientific reports

Status: data only, 1 dataset cited

[19788] doi:10.1038/s41598-025-90489-z [paper, data]

Bioinformatics analysis reveals key mechanisms of oligodendrocytes and oligodendrocyte precursor cells regulation in spinal cord Injury.

Journal: Scientific reports

Status: data only, 2 datasets cited

[19789] doi:10.1038/s41598-025-90603-1 [paper, data]

Comparative study of third-generation sequencing-based CASMA-trio and STR linkage analysis for identifying SMN1 2 + 0 carriers.

Journal: Scientific reports

Status: data only, 1 dataset cited

[19790] doi:10.1038/s41598-025-90860-0 [paper, repository]

Disruption of functional network development in children with prenatal Zika virus exposure revealed by resting-state EEG.

Journal: Scientific reports

Authors' code: Zenodo 13311078 (no license)

Status: dead link

[19791] doi:10.1038/s41598-025-90878-4 [paper, repository]

Dynamic changes in cortical neurotrophic factor-positive interneurons during sleep.

Journal: Scientific reports

Authors' code: christinemlmuheim/NDNF-INs-and-Sleep (MIT)

Status: code verified, 3 files readable, 2 matches

[19792] doi:10.1038/s42255-025-01226-9 [paper, data]

A short-term, high-caloric diet has prolonged effects on brain insulin action in men.

Journal: Nature metabolism

Status: data only, 1 dataset cited

[19793] doi:10.1038/s43587-024-00791-0 [paper, repository]

A primary cilia-autophagy axis in hippocampal neurons is essential to maintain cognitive resilience.

Journal: Nature aging

Authors' code: doi:10.5061/dryad.dfn2z35bh (no license), Zenodo 14000822 (MIT)

Status: code verified, 1 file readable

[19794] doi:10.1038/s44318-025-00390-8 [paper]

Different Ras isoforms regulate synaptic plasticity in opposite directions.

Journal: The EMBO journal

Status: data only

[19795] doi:10.1038/s44319-025-00401-z [paper, repository]

Pumilio differentially binds to mRNA 3' UTR isoforms to regulate localization of synaptic proteins.

Journal: EMBO reports

Authors' code: OpenGene/fastp (MIT), morphonets/snt (GPL-3.0)

Status: code verified, 583 files readable

[19796] doi:10.1073/pnas.2418481122 [paper]

A hormone-to-neuropeptide pathway inhibits sexual receptivity in immature <i>Drosophila</i> females.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[19797] doi:10.1085/jgp.202313506 [paper, repository]

In silico characterization of the gating and selectivity mechanism of the human TPC2 cation channel.

Journal: The Journal of general physiology

Authors' code: figshare 28264301 (CC-BY-4.0)

Status: code verified, 10 files readable

[19798] doi:10.1093/braincomms/fcaf086 [paper, repository]

The neural characteristics influencing literacy outcome in children with cochlear implants.

Journal: Brain communications

Authors' code: nabinkrl/The-Neural-Characteristics-Influencing-Literacy-Outcome-in-Children-with-Cochlear-Implants (MIT)

Status: code verified, 2 files readable

[19799] doi:10.1111/epi.18313 [paper, data]

Voluntary running wheel activity reduces seizure burden and affords neuroprotection in a mouse model of acquired epilepsy.

Journal: Epilepsia

Status: data only, 1 dataset cited

[19800] doi:10.1113/jp287205 [paper, repository]

The pupillary respiratory-phase response: pupil size is smallest around inhalation onset and largest during exhalation.

Journal: The Journal of physiology

Authors' code: OSF nk7zh (no license)

Status: code verified, 1 file readable, 1 match

[19801] doi:10.1162/imag_a_00477 [paper]

Revealing layer-specific cortical activity in human M1 using high-resolution line-scanning fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[19802] doi:10.1162/imag_a_00483 [paper, repository]

An open access resource for marmoset neuroscientific apparatus.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: marmosetbrainconnectome.org/apparatus (no license)

Status: code verified

[19803] doi:10.1186/s12915-025-02148-4 [paper, repository]

An ensemble deep learning framework for multi-class LncRNA subcellular localization with innovative encoding strategy.

Journal: BMC biology

Authors' code: rnalocate.org (no license), xing1999/MGBLncLoc (no license), Zenodo 14776765 (CC-BY-4.0)

Status: code verified, 14 files readable, 5 matches

[19804] doi:10.1186/s12974-025-03369-8 [paper, data]

Growth differentiation factor 15 aggravates sepsis-induced cognitive and memory impairments by promoting microglial inflammatory responses and phagocytosis.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[19805] doi:10.1371/journal.pone.0317566 [paper, repository]

Predicting Parkinson's disease trajectory using clinical and functional MRI features: A reproduction and replication study.

Journal: PloS one

Authors' code: hub.docker.com/repository/docker (no license), deeplearningforprecisionhealthlab/parkinson-severity-rsfmri (BSD-3-Clause), elodiegermani/nguyen-etal-2021 (MIT), LivingPark-MRI/livingpark-utils (MIT), Zenodo 10298335 (CC-BY-4.0), Zenodo 10298359 (CC-BY-4.0)

Status: code verified, 60 files readable, 30 matches

[19806] doi:10.3389/fnins.2025.1522675 [paper, repository]

osl-ephys: a Python toolbox for the analysis of electrophysiology data.

Journal: Frontiers in neuroscience

Authors' code: ajquinn/glmtools (no license)

Status: code verified, 15 files readable

[19807] doi:10.3389/fphar.2025.1551863 [paper]

MFAP4 is a novel prognostic biomarker in glioma correlating with immunotherapy resistance and ferroptosis.

Journal: Frontiers in pharmacology

Status: data only

[19808] doi:10.3390/brainsci15030226 [paper, repository]

Effect of a Plant-Based Nootropic Supplement on Perceptual Decision-Making and Brain Network Interdependencies: A Randomised, Double-Blinded, and Placebo-Controlled Study.

Journal: Brain sciences

Authors' code: rubenherzog/high-order-fc-ml (no license), robince/Bayesian-prevalence (GPL-3.0)

Status: code verified, 41 files readable

[19809] doi:10.3390/ijms26051842 [paper, data]

The Extract of <i>Piper nigrum</i> Improves the Cognitive Impairment and Mood in Sleep-Deprived Mice Through the JAK1/STAT3 Signalling Pathway.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[19810] doi:10.3390/ijms26051845 [paper, repository]

Noninvasive Detection of Oxidative Stress in a Mouse Model of 4R Tauopathy via Positron Emission Tomography with [<sup>18</sup>F]ROStrace.

Journal: International journal of molecular sciences

Authors' code: Evangall/fiji-scripts (no license)

Status: empty repository, 1 file readable

[19811] doi:10.3390/ijms26051875 [paper, data]

Identification of Prognostic Genes Related to Cell Senescence and Lipid Metabolism in Glioblastoma Based on Transcriptome and Single-Cell RNA-Seq Data.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[19812] doi:10.3390/life15030333 [paper, data]

Sex-Specific Adaptations in Alzheimer's Disease and Ischemic Stroke: A Longitudinal Study in Male and Female APP<sub>swe</sub>/PS1<sub>dE9</sub> Mice.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[19813] doi:10.3758/s13414-025-03027-4 [paper, data]

An event-related potential study of onset primacy in visual change detection.

Journal: Attention, perception & psychophysics

Status: data only, 1 dataset cited

[19814] doi:10.7717/peerj-cs.2670 [paper, repository]

Lightweight-CancerNet: a deep learning approach for brain tumor detection.

Journal: PeerJ. Computer science

Authors' code: supp:PMC11888863/peerj-cs-11-2670-s001.ipynb (no license)

Status: code verified, 1 file readable

[19815] doi:10.7717/peerj-cs.2718 [paper, repository]

Classification of sleep apnea syndrome using the spectrograms of EEG signals and YOLOv8 deep learning model.

Journal: PeerJ. Computer science

Authors' code: supp:PMC11888935/peerj-cs-11-2718-s002.ipynb (no license), supp:PMC11888935/peerj-cs-11-2718-s003.py (no license)

Status: code verified, 2 files readable, 2 matches

Thursday, 20 February 2025 (38 papers)

[19816] doi:10.1007/s11357-025-01561-5 [paper, data]

Transcriptomic profiling of senescence effects on blood-brain barrier-related gene expression in brain capillary endothelial cells in a mouse model of paclitaxel-induced chemobrain.

Journal: GeroScience

Status: data only, 1 dataset cited

[19817] doi:10.1016/j.isci.2025.112065 [paper]

Structural connectivity of the fore- and mid-brain in prairie voles.

Journal: iScience

Status: code on request

[19818] doi:10.1016/j.jtha.2025.02.013 [paper, repository]

Functional disability after clinically significant extracranial bleeding: a secondary analysis of the Aspirin in Reducing Events in the Elderly (ASPREE) Trial.

Journal: Journal of thrombosis and haemostasis : JTH

Authors' code: sachinjshah (no license)

Status: code verified

[19819] doi:10.1021/acs.molpharmaceut.4c00975 [paper, repository]

Meta-Analysis of Permeability Literature Data Shows Possibilities and Limitations of Popular Methods.

Journal: Molecular pharmaceutics

Authors' code: MolMeDB/How-Usable-Are-Published-Permeability-Data (no license), workflowhub.eu/workflows/1109 (no license)

Status: code verified, 6 files readable

[19820] doi:10.1038/s41397-024-00360-z [paper]

Genetic markers of early response to lurasidone in acute schizophrenia.

Journal: The pharmacogenomics journal

Status: code on request

[19821] doi:10.1038/s41467-024-54738-5 [paper, repository]

A neural implementation model of feedback-based motor learning.

Journal: Nature communications

Authors' code: babaf/feedback-driven-plasticity (MIT)

Status: code verified, 9 files readable, 1 match

[19822] doi:10.1038/s41467-025-56979-4 [paper, repository]

Bacteria invade the brain following intracortical microelectrode implantation, inducing gut-brain axis disruption and contributing to reduced microelectrode performance.

Journal: Nature communications

Authors' code: OSF jkg27 (no license)

Status: code verified, 12 files readable, 11 matches

[19823] doi:10.1038/s41467-025-57049-5 [paper, repository]

Striatal arbitration between choice strategies guides few-shot adaptation.

Journal: Nature communications

Authors' code: kevin-j-miller/MBB2017-rat-two-step-task (Apache-2.0), codeocean:5313303 (no license), codeocean:8484843 (no license)

Status: code verified, 83 files readable, 3 matches

[19824] doi:10.1038/s41467-025-57051-x [paper, repository]

Calcium levels in ASER neurons determine behavioral valence by engaging distinct neuronal circuits in C. elegans.

Journal: Nature communications

Authors' code: yubestlab/yubestlab.github.io (no license), Zenodo 14498577 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[19825] doi:10.1038/s41467-025-57078-0 [paper, repository]

Explainable artificial intelligence of DNA methylation-based brain tumor diagnostics.

Journal: Nature communications

Authors' code: hovestadt/shinyMNP (MIT)

Status: code verified, 5 files readable, 3 matches

[19826] doi:10.1038/s41467-025-57108-x [paper, repository]

Fc-engineered large molecules targeting blood-brain barrier transferrin receptor and CD98hc have distinct central nervous system and peripheral biodistribution.

Journal: Nature communications

Authors' code: Zenodo 13935844 (CC-BY-NC-ND-4.0)

Status: code verified, 55 files readable, 22 matches

[19827] doi:10.1038/s41467-025-57115-y [paper, repository]

Multiple brain activation patterns for the same perceptual decision-making task.

Journal: Nature communications

Authors' code: OSF kpnbs (no license), cvnlab/GLMsingle (BSD-3-Clause)

Status: code verified, 169 files readable, 5 matches

[19828] doi:10.1038/s41592-025-02610-9 [paper, repository]

Genetically encoded biosensor for fluorescence lifetime imaging of PTEN dynamics in the intact brain.

Journal: Nature methods

Authors' code: ryoheiyasuda/FLIMage_public (no license), schollben/imaging (no license)

Status: code verified, 363 files readable, 4 matches

[19829] doi:10.1038/s41598-025-88398-2 [paper, repository]

Neurocognitive and brain structure correlates of reading and television habits in early adolescence.

Journal: Scientific reports

Authors' code: rauschecker-sugrue-labs/abcd-tvreading (no license)

Status: code verified, 5 files readable, 6 matches

[19830] doi:10.1038/s41598-025-90605-z [paper, data]

Antimicrobial cyclic peptides effectively inhibit multiple forms of Borrelia and cross the blood-brain barrier model.

Journal: Scientific reports

Status: data only, 1 dataset cited

[19831] doi:10.1038/s42003-025-07464-7 [paper, repository]

Learning to operate an imagined speech Brain-Computer Interface involves the spatial and frequency tuning of neural activity.

Journal: Communications biology

Authors' code: OSF vr26k (no license)

Status: code verified, 20 files readable, 4 matches

[19832] doi:10.1038/s42003-025-07704-w [paper, repository]

Automatic engagement of limbic and prefrontal networks in response to food images reflects distinct information about food hedonics and inhibitory control.

Journal: Communications biology

Authors' code: OSF 8ds7g (no license)

Status: code verified, 13 files readable, 9 matches

[19833] doi:10.1038/s42003-025-07733-5 [paper]

mGluR5-mediated astrocytes hyperactivity in the anterior cingulate cortex contributes to neuropathic pain in male mice.

Journal: Communications biology

Status: code on request

[19834] doi:10.1073/pnas.2411098122 [paper, repository]

Temporal autocorrelation is predictive of age-An extensive MEG time-series analysis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: time-series-features.gitbook.io/hctsa-manual (no license), chstier/Aging_timefeats (GPL-2.0), benfulcher/hctsa (CC-BY-NC-SA-4.0), mlconfound.readthedocs.io (no license)

Status: code verified, 1,193 files readable, 16 matches

[19835] doi:10.1073/pnas.2411492122 [paper, repository]

Learning-based inference of longitudinal image changes: Applications in embryo development, wound healing, and aging brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: heejong-kim/LILAC (Apache-2.0)

Status: code verified, 9 files readable

[19836] doi:10.1073/pnas.2421717122 [paper, repository]

The endocannabinoid 2-arachidonoylglycerol is released and transported on demand via extracellular microvesicles.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: sebastian-tandar/endocannabionoid2ag (no license)

Status: code verified, 7 files readable

[19837] doi:10.1111/jsr.70007 [paper, repository]

Actigraphy against 32-hour polysomnography in patients with suspected idiopathic hypersomnia.

Journal: Journal of sleep research

Authors' code: TukDwal/Actigraphy_Idiopathic_Hypersomnia (no license)

Status: code verified, 4 files readable, 3 matches

[19838] doi:10.1159/000544824 [paper, repository]

Quantifying the Timing of Gyral and Sulcal Formation Relative to Growth in the Ferret Cerebral Cortex.

Journal: Developmental neuroscience

Authors' code: stnava/ANTsDoc (no license)

Status: code verified, 25 files readable

[19839] doi:10.1162/imag_a_00475 [paper, data]

A compact time-domain diffuse optical tomography system for cortical neuroimaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[19840] doi:10.1162/imag_a_00480 [paper, repository]

Categorization and discrimination of human and non-human primate affective vocalizations: Investigation of frontal cortex activity through fNIRS.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: yareta.unige.ch (no license)

Status: code verified

[19841] doi:10.1186/s12864-025-11362-x [paper, repository]

Interaction of genetic variants and methylation in transcript-level expression regulation in Alzheimer's disease by multi-omics data analysis.

Journal: BMC genomics

Authors' code: snubmi/SNPMet-Promoter (no license)

Status: code verified, 3 files readable

[19842] doi:10.1186/s12935-025-03682-5 [paper, data]

Expression of stearoyl coenzyme a desaturase in neuronal cells facilitates pancreatic cancer progression.

Journal: Cancer cell international

Status: data only, 1 dataset cited

[19843] doi:10.1186/s12984-025-01571-6 [paper, data]

Proficiency in motor imagery is linked to the lateralization of focused ERD patterns and beta PDC.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

[19844] doi:10.1186/s13148-025-01837-9 [paper]

Glucocorticoid exposure-induced alterations in epigenetic age from human preterm infants and human lung fibroblasts and hippocampal neuronal cells.

Journal: Clinical epigenetics

Status: data only

[19845] doi:10.1186/s13578-025-01366-1 [paper, data]

Whole-genome bisulfite sequencing of cell-free DNA unveils age-dependent and ALS-associated methylation alterations.

Journal: Cell & bioscience

Status: data only, 1 dataset cited

[19846] doi:10.1242/dmm.052110 [paper, data]

Modelling a pathological GSX2 variant that selectively alters DNA binding reveals hypomorphic mouse brain defects.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[19847] doi:10.1371/journal.pone.0318297 [paper, repository]

Speech emotion recognition using fine-tuned Wav2vec2.0 and neural controlled differential equations classifier.

Journal: PloS one

Authors' code: Ni-W/NCDE-wav2vec2 (Apache-2.0)

Status: code verified, 64 files readable, 2 matches

[19848] doi:10.21769/bioprotoc.5218 [paper, repository]

Streamlined Quantification of Microglial Morphology in Mouse Brains Using 3D Immunofluorescence Analysis.

Journal: Bio-protocol

Authors' code: AndreudeDonato/Read_Imaris_zstack (no license)

Status: code verified, 3 files readable

[19849] doi:10.3390/brainsci15030221 [paper, data]

Effects of Packet Loss on Neural Decoding Effectiveness in Wireless Transmission.

Journal: Brain sciences

Status: data only, 1 dataset cited

[19850] doi:10.3390/ijms26051816 [paper]

Biomarker Identification for Alzheimer's Disease Using a Multi-Filter Gene Selection Approach.

Journal: International journal of molecular sciences

Status: data only

[19851] doi:10.3390/ijms26051831 [paper, data]

Candidate Key Proteins in Tinnitus-A Bioinformatic Study of Synaptic Transmission in the Inferior Colliculus.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[19852] doi:10.3390/life15030327 [paper, data]

Brain Tumor Detection and Prediction in MRI Images Utilizing a Fine-Tuned Transfer Learning Model Integrated Within Deep Learning Frameworks.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[19853] doi:10.7554/elife.100652 [paper, repository]

Robust variability of grid cell properties within individual grid modules enhances encoding of local space.

Journal: eLife

Authors' code: ucsb-goard-lab/Robust-Grid-Cell-Variability (MIT)

Status: code verified, 30 files readable, 6 matches

Wednesday, 19 February 2025 (29 papers)

[19854] doi:10.1002/alz.14531 [paper, repository]

GABAergic modulation of beta power enhances motor adaptation in frontotemporal lobar degeneration.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: LauraHughes2024/MEG2024 (no license)

Status: empty repository

[19855] doi:10.1016/j.csbj.2025.02.019 [paper, repository]

Testing machine learning algorithms to evaluate fluctuating and cognitive profiles in Parkinson's disease by motion sensors and EEG data.

Journal: Computational and structural biotechnology journal

Authors' code: SalvoQuattropani/ParkinsonAI-Toolkit (no license)

Status: code verified, 4 files readable

[19856] doi:10.1038/s41419-025-07420-7 [paper, data]

Unravelling genotype-phenotype correlations in Stargardt disease using patient-derived retinal organoids.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[19857] doi:10.1038/s41467-025-56733-w [paper, repository]

Deciphering neuronal variability across states reveals dynamic sensory encoding.

Journal: Nature communications

Authors' code: shailajaAkella/Deciphering-neuronal-variability (no license), Zenodo 14559497 (CC-BY-4.0)

Status: code verified, 32 files readable, 26 matches

[19858] doi:10.1038/s41467-025-56844-4 [paper, data]

Ball-and-chain inactivation of a human large conductance calcium-activated potassium channel.

Journal: Nature communications

Status: data only, 2 datasets cited

[19859] doi:10.1038/s41531-025-00879-3 [paper]

Motor cortex stimulation ameliorates parkinsonian locomotor deficits: effectual and mechanistic differences from subthalamic modulation.

Journal: NPJ Parkinson's disease

Status: code on request

[19860] doi:10.1038/s41586-024-08579-3 [paper, data]

GABAergic neuron-to-glioma synapses in diffuse midline gliomas.

Journal: Nature

Status: data only, 1 dataset cited

[19861] doi:10.1038/s41597-025-04579-8 [paper, data]

Ear-EEG sleep monitoring data sets.

Journal: Scientific data

Status: data only, 3 datasets cited

[19862] doi:10.1038/s41598-025-89257-w [paper, repository]

Bias in data-driven replicability analysis of univariate brain-wide association studies.

Journal: Scientific reports

Authors' code: charlesdgburns/rwr (no license)

Status: code verified, 5 files readable, 5 matches

[19863] doi:10.1038/s41598-025-90572-5 [paper, repository]

Ensemble fuzzy deep learning for brain tumor detection.

Journal: Scientific reports

Authors' code: kaggle.com/mateuszbuda/lgg-mri-segmentation (no license), kaggle.com/andrewmvd/liver-tumor-segmentation (no license)

Status: dead link

[19864] doi:10.1038/s42003-025-07714-8 [paper, data]

Ceruloplasmin administration in the preclinical mouse model of aceruloplasminemia reveals a sex-related variation in biodistribution.

Journal: Communications biology

Status: data only, 1 dataset cited

[19865] doi:10.1038/s44321-025-00201-x [paper, data]

Targeting cIAP2 in a novel senolytic strategy prevents glioblastoma recurrence after radiotherapy.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[19866] doi:10.1063/5.0236108 [paper, data]

Analgesic effect of simultaneously targeting multiple pain processing brain circuits in an aged humanized mouse model of chronic pain by transcranial focused ultrasound.

Journal: APL bioengineering

Status: data only, 2 datasets cited

[19867] doi:10.1080/19336950.2025.2464735 [paper, data]

Biophysical and structural mechanisms of epilepsy-associated mutations in the S4-S5 Linker of KCNQ2 channels.

Journal: Channels (Austin, Tex.)

Status: data only, 1 dataset cited

[19868] doi:10.1093/braincomms/fcaf083 [paper, repository]

Dynamic reconfiguration of brain functional networks in world class gymnasts: a resting-state functional MRI study.

Journal: Brain communications

Authors' code: GenLouvain/GenLouvain (BSD-2-Clause)

Status: code verified, 46 files readable, 2 matches

[19869] doi:10.1093/braincomms/fcaf084 [paper, repository]

Theta and alpha connectivity in children with autism spectrum disorder.

Journal: Brain communications

Authors' code: luphysics/MODA (GPL-3.0)

Status: code verified, 72 files readable, 7 matches

[19870] doi:10.1098/rsos.241081 [paper, repository]

The fundamental frequencies of our own voice.

Journal: Royal Society open science

Authors' code: OSF 9vpt3 (no license)

Status: code verified

[19871] doi:10.1126/sciadv.adp9336 [paper, repository]

Reinstatement and transformation of memory traces for recognition.

Journal: Science advances

Authors' code: Zenodo 13866456 (CC-BY-4.0)

Status: code verified, 1 file readable

[19872] doi:10.1126/sciadv.adq5842 [paper, data]

Activity-dependent regulation of microglia numbers by pyramidal cells during development shape cortical functions.

Journal: Science advances

Status: data only, 1 dataset cited

[19873] doi:10.1186/s40478-025-01952-x [paper, data]

Spatial analysis of a complete DIPG-infiltrated brainstem reveals novel ligand-receptor mediators of tumour-to-TME crosstalk.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[19874] doi:10.1186/s42523-024-00358-9 [paper, repository]

Intrauterine growth restriction, defined by an elevated brain-to-liver weight ratio, affects faecal microbiota composition and, to a lesser extent, plasma metabolome profile at different ages in pigs.

Journal: Animal microbiome

Authors' code: figshare 202746 (CC-BY-4.0)

Status: empty repository

[19875] doi:10.1371/journal.pcbi.1012822 [paper, repository]

Compression-enabled interpretability of voxelwise encoding models.

Journal: PLoS computational biology

Authors' code: abbasilab/compressed-bold-models (MIT)

Status: code verified, 27 files readable, 8 matches

[19876] doi:10.1523/eneuro.0275-24.2025 [paper, repository]

Improving Tracking of Selective Attention in Hearing Aid Users: The Role of Noise Reduction and Nonlinearity Compensation.

Journal: eNeuro

Authors' code: JohannaWil/NonlinearCompensationEEG (MIT)

Status: code verified, 20 files readable, 6 matches

[19877] doi:10.3389/fmed.2025.1540297 [paper, data]

Brain functional connectivity analysis of fMRI-based Alzheimer's disease data.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[19878] doi:10.3389/fnins.2025.1545690 [paper, data]

Plasma exosomal miRNA expression and gut microbiota dysbiosis are associated with cognitive impairment in Alzheimer's disease.

Journal: Frontiers in neuroscience

Status: data only, 3 datasets cited

[19879] doi:10.3389/fnrgo.2025.1535799 [paper, data]

Evaluating robotic actions: spatiotemporal brain dynamics of performance assessment in robot-assisted laparoscopic training.

Journal: Frontiers in neuroergonomics

Status: data only, 1 dataset cited

[19880] doi:10.3389/fnsys.2025.1525717 [paper, repository]

Local connections among excitatory neurons underlie characteristics of enriched environment exposure-induced neuronal response modulation in layers 2/3 of the mouse V1.

Journal: Frontiers in systems neuroscience

Authors' code: figshare 20934352 (CC-BY-4.0)

Status: code verified, 10 files readable

[19881] doi:10.3389/frai.2025.1525240 [paper, data]

XAI-MRI: an ensemble dual-modality approach for 3D brain tumor segmentation using magnetic resonance imaging.

Journal: Frontiers in artificial intelligence

Status: data only, 1 dataset cited

[19882] doi:10.5498/wjp.v15.i2.100738 [paper]

Sodium channel mutation <i>SCN1A</i> T875M, D188V and associated dysfunction with drug resistant epilepsy.

Journal: World journal of psychiatry

Status: code on request

Tuesday, 18 February 2025 (47 papers)

[19883] doi:10.1002/advs.202417367 [paper, data]

GPR37 Activation Alleviates Bone Cancer Pain via the Inhibition of Osteoclastogenesis and Neuronal Hyperexcitability.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[19884] doi:10.1002/mrm.30446 [paper, repository]

Focused ultrasound-induced blood-brain barrier opening: A comparative analysis of permeability quantification based on K trans and PS.

Journal: Magnetic resonance in medicine

Authors' code: Zenodo 13683103 (CC-BY-4.0), NMRISIBrno/PerfSim (MIT), Zenodo 136831032024 (no license)

Status: code verified, 40 files readable, 5 matches

[19885] doi:10.1007/s00259-025-07114-4 [paper, repository]

IRMA: Machine learning-based harmonization of 18 F-FDG PET brain scans in multi-center studies.

Journal: European journal of nuclear medicine and molecular imaging

Authors' code: SofieLovdal/IRMA-harmonization (MIT)

Status: code verified, 6 files readable, 4 matches

[19886] doi:10.1007/s12035-025-04771-2 [paper]

The Abnormal ERα-miRNA Cross-Talk in AD-Affected Human Hippocampus: A Bioinformatics Perspective.

Journal: Molecular neurobiology

Status: code on request

[19887] doi:10.1016/j.celrep.2025.115300 [paper, repository]

Spatiotemporal analysis of gene expression in the human dentate gyrus reveals age-associated changes in cellular maturation and neuroinflammation.

Journal: Cell reports

Authors' code: Zenodo 10126688 (CC-BY-4.0), Zenodo 10126715 (CC-BY-4.0), lieberinstitute/spatial_dg_lifespan (no license)

Status: code verified, 104 files readable, 32 matches

[19888] doi:10.1016/j.nbd.2025.106850 [paper, data]

Deficits in taste-guided behaviors and central processing of taste in the transgenic TDP-43&lt;sup&gt;Q331K&lt;/sup&gt; mouse model of frontotemporal dementia.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[19889] doi:10.1016/j.nicl.2025.103752 [paper, repository]

Multi-atlas multi-modality morphometry analysis of the South Texas Alzheimer's Disease Research Center postmortem repository.

Journal: NeuroImage. Clinical

Authors' code: UTHSCSA-NAL/postmortem_morphometry_2024 (MIT)

Status: code verified, 20 files readable, 4 matches

[19890] doi:10.1016/j.ynirp.2025.100240 [paper, data]

Practical scan-length considerations for mapping upper limb movements to the somatosensory/motor cortex at 7T: A pilot study.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

[19891] doi:10.1038/s41467-025-56569-4 [paper, repository]

iPSCs and iPSC-derived cells as a model of human genetic and epigenetic variation.

Journal: Nature communications

Authors' code: hyungjoo-lee/wgbs (no license)

Status: code verified, 13 files readable

[19892] doi:10.1038/s41467-025-56579-2 [paper, repository]

A humanized NOVA1 splicing factor alters mouse vocal communications.

Journal: Nature communications

Authors' code: zhanglab.c2b2.columbia.edu/index.php/standard (no license), Neurogenetics-Jarvis/MSA2 (no license), cafeblue/popgen_dbsnp (no license), Zenodo 14367749 (CC-BY-4.0), rockefelleruniversity/popgen_dbsnp (no license)

Status: code verified, 14 files readable, 1 match

[19893] doi:10.1038/s41467-025-56951-2 [paper, repository]

Doublecortin restricts neuronal branching by regulating tubulin polyglutamylation.

Journal: Nature communications

Authors' code: hendricks-lab/Lysosome_Tracking_DCX (no license), brouhardlab/sebastien-2024 (no license), sites.imagej.net/hadim (no license), Zenodo 14735751 (CC-BY-4.0)

Status: code verified, 15 files readable, 3 matches

[19894] doi:10.1038/s41467-025-56998-1 [paper, data]

Neuronal hyperactivity in neurons derived from individuals with gray matter heterotopia.

Journal: Nature communications

Status: data only, 1 dataset cited

[19895] doi:10.1038/s41467-025-57066-4 [paper, data]

Genome-wide interaction association analysis identifies interactive effects of childhood maltreatment and kynurenine pathway on depression.

Journal: Nature communications

Status: data only, 1 dataset cited

[19896] doi:10.1038/s41537-025-00568-3 [paper, repository]

Reduced temporal variability of cortical excitation/inhibition ratio in schizophrenia.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: samuelracz/schizophrenia_EI_variability (GPL-3.0)

Status: code verified, 25 files readable, 11 matches

[19897] doi:10.1038/s41598-025-89249-w [paper, repository]

Linear regressive weighted Gaussian kernel liquid neural network for brain tumor disease prediction using time series data.

Journal: Scientific reports

Authors' code: kaggle.com/competitions/hms-harmful-brain-activity-classification (no license)

Status: dead link

[19898] doi:10.1038/s41746-025-01484-7 [paper, repository]

Predicting clinical pathways of traumatic brain injuries (TBIs) through process mining.

Journal: NPJ digital medicine

Authors' code: MansourehYari/ProcessMonitoring (no license)

Status: code verified, 2 files readable

[19899] doi:10.1038/s42003-025-07671-2 [paper, repository]

GINNA, a 33 resting-state networks atlas with meta-analytic decoding-based cognitive characterization.

Journal: Communications biology

Authors' code: Achillegillig/ginna (GPL-3.0), Zenodo 14732372 (GPL-3.0), Zenodo 4776037 (MIT)

Status: code verified, 15 files readable, 7 matches

[19900] doi:10.1073/pnas.2409921122 [paper, data]

GABAergic synapses between auditory efferent neurons and type II spiral ganglion afferent neurons in the mouse cochlea.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[19901] doi:10.1073/pnas.2424180122 [paper, data]

Agouti and BMP signaling drive a naturally occurring fate conversion of melanophores to leucophores in zebrafish.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[19902] doi:10.1080/20565623.2025.2463852 [paper, data]

Resveratrol alleviates depressive-like behavior via the activation of SIRT1/NF-κB signaling pathway in microglia.

Journal: Future science OA

Status: data only, 1 dataset cited

[19903] doi:10.1093/braincomms/fcaf077 [paper]

Characterization of a novel zebrafish model of &lt;i&gt;MTMR5&lt;/i&gt;-associated Charcot-Marie-Tooth disease type 4B3.

Journal: Brain communications

Status: data only

[19904] doi:10.1111/febs.17426 [paper, data]

Estrogen synthesized in the central nervous system enhances MC4R expression and reduces food intake.

Journal: The FEBS journal

Status: data only, 1 dataset cited

[19905] doi:10.1111/jsr.14479 [paper, repository]

MRI-based surrogates of brain clearance in narcolepsy type 1.

Journal: Journal of sleep research

Authors' code: evavanheese/DTI-ALPS (MIT), evavanheese/BOLD-CSF (MIT), evavanheese (no license)

Status: code verified, 8 files readable, 6 matches

[19906] doi:10.1113/jp287857 [paper, repository]

Flexible control of motor units: is the multidimensionality of motor unit manifolds a sufficient condition?

Journal: The Journal of physiology

Authors' code: FrancoisDernoncourt/Motor_unit_flexibility (MIT)

Status: code verified, 30 files readable, 16 matches

[19907] doi:10.1113/jp288400 [paper, repository]

Modelling the time-resolved modulations of cardiac activity in rats: A study on pharmacological autonomic stimulation.

Journal: The Journal of physiology

Authors' code: diegocandiar/robust_hrv (no license)

Status: code verified, 7 files readable, 2 matches

[19908] doi:10.1162/imag_a_00445 [paper, repository]

Somatosensory-evoked response induces extensive diffusivity and kurtosis changes associated with neural activity in rodents.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sunenj/Fast-diffusion-kurtosis-imaging-DKI (no license)

Status: code verified, 14 files readable

[19909] doi:10.1162/imag_a_00466 [paper, repository]

Similar trajectories of psychological states predict marital satisfaction.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 11377487 (CC-BY-4.0)

Status: code verified

[19910] doi:10.1162/imag_a_00469 [paper, repository]

Modeling neural contrast sensitivity functions in human visual cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: spinoza-centre/prfpy_csenf (GPL-3.0)

Status: code verified, 13 files readable, 4 matches

[19911] doi:10.1162/imag_a_00470 [paper, repository]

Fast and reliable quantitative measures of white matter development with magnetic resonance fingerprinting.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: SophieSchau/MRF_demo_ISMRM2022 (no license)

Status: code verified, 19 files readable, 1 match

[19912] doi:10.1162/imag_a_00471 [paper]

Bundle-specific tractography approach for identifying white matter microstructural changes following traumatic brain injury in rats: An EpiBioS4Rx study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[19913] doi:10.1162/imag_a_00472 [paper]

Detecting glioblastoma infiltration beyond conventional imaging tumour margins using MTE-NODDI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[19914] doi:10.1162/imag_a_00473 [paper, repository]

Characterizing the spatial patterns and determinants of cerebrospinal fluid pseudorandom flow in the human brain with low b-value diffusion MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: asotiras/brainparts (other)

Status: code verified, 6 files readable

[19915] doi:10.1162/imag_a_00474 [paper, repository]

Exploring neuroendocrine influences on the sensorimotor-association axis in a female and a male individual.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), biancaserio/MC_gradients (no license), tsantander/PritschetSantander2020_NI_Hormones (MIT)

Status: code verified, 334 files readable, 8 matches

[19916] doi:10.1162/imag_a_00476 [paper, data]

Concurrent representations of reinstated and transformed memories and their modulation by reward.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[19917] doi:10.1162/imag_a_00478 [paper, repository]

Spurious correlations in surface-based functional brain imaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: jaysonjeg/track_align (no license), nikitas-k/onavg-ind (MIT)

Status: code verified, 44 files readable, 9 matches

[19918] doi:10.1162/imag_a_00482 [paper, repository]

Neural and behavioral similarity-driven tuning curves for manipulable objects.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 3vgq2 (no license)

Status: code verified, 13 files readable, 1 match

[19919] doi:10.1186/s11689-025-09593-w [paper]

Atypical audio-visual neural synchrony and speech processing in early autism.

Journal: Journal of neurodevelopmental disorders

Status: code on request

[19920] doi:10.1186/s12984-025-01570-7 [paper, data]

Sway frequencies may predict postural instability in Parkinson's disease: a novel convolutional neural network approach.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

[19921] doi:10.1186/s13229-025-00644-6 [paper, data]

Dynamic functional adaptations during touch observation in autism: connectivity strength is linked to attitudes towards social touch and social responsiveness.

Journal: Molecular autism

Status: data only, 2 datasets cited

[19922] doi:10.3389/fneur.2024.1407107 [paper, data]

Association between early coagulation disorders and the risk of severe acute kidney injury in traumatic brain injury patients: a retrospective cohort study using the MIMIC-IV database.

Journal: Frontiers in neurology

Status: data only, 2 datasets cited

[19923] doi:10.3389/fneur.2025.1504535 [paper, repository]

A comparative study of methods for dynamic survival analysis.

Journal: Frontiers in neurology

Authors' code: Wieske/DSA_comparison (no license)

Status: code verified, 16 files readable, 10 matches

[19924] doi:10.3390/ijms26041723 [paper, repository]

Risk Prediction of RNA Off-Targets of CRISPR Base Editors in Tissue-Specific Transcriptomes Using Language Models.

Journal: International journal of molecular sciences

Authors' code: KazukiNakamae/PiCTURE (MIT), KazukiNakamae/PROTECTiO (MIT)

Status: code verified, 60 files readable, 24 matches

[19925] doi:10.3758/s13415-025-01265-5 [paper]

Reward responses to vicarious feeding depend on body mass index.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request

[19926] doi:10.3758/s13415-025-01268-2 [paper, data]

Machine learning classification of active viewing of pain and non-pain images using EEG does not exceed chance in external validation samples.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request, 1 dataset cited

[19927] doi:10.3758/s13423-024-02632-y [paper, data]

Changing the speed and order of attentional selection in visual search.

Journal: Psychonomic bulletin & review

Status: code on request, 1 dataset cited

[19928] doi:10.7554/elife.93033 [paper, repository]

Visual homogeneity computations in the brain enable solving property-based visual tasks.

Journal: eLife

Authors' code: OSF cvzxt (no license)

Status: code verified, 84 files readable, 3 matches

[19929] doi:10.7554/elife.98522 [paper, repository]

An adaptable, reusable, and light implant for chronic Neuropixels probes.

Journal: eLife

Authors' code: coen-lab/chronic-neuropixels (AGPL-3.0), Zenodo 817282210 (no license)

Status: code verified, 13 files readable, 4 matches

Monday, 17 February 2025 (33 papers, 7 on this page)

[19930] doi:10.1002/acn3.52311 [paper, data]

Ethnoracial disparities in gray matter atrophy are mediated by structural disconnectivity in multiple sclerosis.

Journal: Annals of clinical and translational neurology

Status: data only, 1 dataset cited

[19931] doi:10.1002/acn3.70007 [paper]

Amygdala Neurodegeneration: A Key Driver of Visual Dysfunction in Parkinson's Disease.

Journal: Annals of clinical and translational neurology

Status: code on request

[19932] doi:10.1002/acn3.70009 [paper]

Associations of Cerebrospinal Fluid Orexin-A, Alzheimer Disease Biomarkers, and Cognitive Performance.

Journal: Annals of clinical and translational neurology

Status: code on request

[19933] doi:10.1002/aisy.202400894 [paper, repository]

Cloud-Based Control System with Sensing and Actuating Textile-Based IoT Gloves for Telerehabilitation Applications.

Journal: Advanced intelligent systems (Weinheim an der Bergstrasse, Germany)

Authors' code: kadirozlem/TelerehabilitationGloves (Apache-2.0)

Status: code verified, 220 files readable, 2 matches

[19934] doi:10.1007/s00234-025-03568-3 [paper, repository]

White matter injuries mediate brain age effects on cognitive function in cerebral small vessel disease.

Journal: Neuroradiology

Authors' code: estenhl/pyment-public (CC-BY-NC-4.0)

Status: code verified, 68 files readable, 1 match

[19935] doi:10.1007/s11060-025-04967-5 [paper, data]

T-type calcium channels regulate medulloblastoma and can be targeted for therapy.

Journal: Journal of neuro-oncology

Status: data only, 1 dataset cited

[19936] doi:10.1007/s13534-025-00462-y [paper, repository]

Automatic prediction of stroke treatment outcomes: latest advances and perspectives.

Journal: Biomedical engineering letters

Authors' code: multimodallearning/stroke-prediction (no license), zeynelsamak/Thrombectomy-Outcome (no license), prediction2020/multimodal-classification (MIT), apint0/stroke_prediction (MIT), zeynelsamak/FeMA (no license), L-Ramos/mrclean_combination (no license), kimberly-amador/Spatiotemporal-CNN-Transformer (no license), sdlee087/deep_medical (no license), liherz/functional_outcome_prediction_dl_vs_neurologists (no license), Yutong441/deepCTP (no license), zeynelsamak/TranSOP (no license), GravO8/mrs-dl (no license), jdddog/deep-mt (Apache-2.0), gitlab.cs.fau.de/gu47bole/ais (no license), kimberly-amador/Multimodal-mRS90-Outcome-Prediction (no license)

Status: code verified, 346 files readable, 2 matches

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