Every paper, by date: page 91

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 91 of 200: 8 February 2025 to 1 February 2025.

Saturday, 8 February 2025 (16 papers, 3 on this page)

[20161] doi:10.1186/s40708-025-00251-4 [paper, data]

Novel machine learning-driven comparative analysis of CSP, STFT, and CSP-STFT fusion for EEG data classification across multiple meditation and non-meditation sessions in BCI pipeline.

Journal: Brain informatics

Status: data only, 2 datasets cited

[20162] doi:10.3390/cancers17040581 [paper, data]

Construction of a miRNA Panel for Differentiating Lung Adenocarcinoma Brain Metastases and Glioblastoma.

Journal: Cancers

Status: data only, 1 dataset cited

[20163] doi:10.3390/ph18020233 [paper, data]

Design, Synthesis, and Computational Evaluation of 3,4-Dihydroquinolin-2(<i>1H</i>)-One Analogues as Potential VEGFR2 Inhibitors in Glioblastoma Multiforme.

Journal: Pharmaceuticals (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 7 February 2025 (33 papers)

[20164] doi:10.1002/advs.202412517 [paper]

GNE-317 Reverses MSN-Mediated Proneural-to-Mesenchymal Transition and Suppresses Chemoradiotherapy Resistance in Glioblastoma via PI3K/mTOR.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[20165] doi:10.1002/advs.202415262 [paper, repository]

Cortical Morphometric Similarity Remodeling in Traumatic Brain Injury Links Cognitive Impairments with Transcriptional Changes and Type-Specific Cells.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: BMHLab/AHBAprocessing (no license), SarahMorgan/MorphometricSimilaritySZ (no license)

Status: code verified, 386 files readable, 1 match

[20166] doi:10.1002/advs.202416610 [paper]

A Rapid Cortical Learning Process Supporting Students' Knowledge Construction During Real Classroom Teaching.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: code on request

[20167] doi:10.1002/mp.17666 [paper, data]

A database of magnetic resonance imaging-transcranial ultrasound co-registration.

Journal: Medical physics

Status: data only, 1 dataset cited

[20168] doi:10.1007/s00259-025-07118-0 [paper, data]

A hybrid [&lt;sup&gt;18&lt;/sup&gt;F]fluoropivalate PET-multiparametric MRI to detect and characterise brain tumour metastases based on a permissive environment for monocarboxylate transport.

Journal: European journal of nuclear medicine and molecular imaging

Status: data only, 1 dataset cited

[20169] doi:10.1007/s00422-025-01005-5 [paper, repository]

The role of the prefrontal cortex in cocaine-induced noradrenaline release in the nucleus accumbens: a computational study.

Journal: Biological cybernetics

Authors' code: ctnlab/NTS_NE (no license)

Status: code verified, 9 files readable, 2 matches

[20170] doi:10.1016/j.dcn.2025.101526 [paper, repository]

A longitudinal neuroimaging study of adolescent girls' mentalizing and perspective-taking tendencies.

Journal: Developmental cognitive neuroscience

Authors' code: Zenodo 1412131 (other-open)

Status: code verified, 5 files readable, 1 match

[20171] doi:10.1016/j.isci.2025.111970 [paper]

Balancing postural control and motor inhibition during gait initiation.

Journal: iScience

Status: code on request

[20172] doi:10.1016/j.isci.2025.111971 [paper, data]

Episodic rhythmicity is generated by a distributed neural network in the developing mammalian spinal cord.

Journal: iScience

Status: data only, 1 dataset cited

[20173] doi:10.1016/j.jarlif.2025.100002 [paper, repository]

Pre-surgical memory impairment is associated with risk of postoperative cognitive dysfunction in a large geriatric cohort.

Journal: JAR life

Authors' code: Wiebachj/POCDr (other)

Status: code verified, 3 files readable

[20174] doi:10.1016/j.xcrm.2025.101943 [paper]

Combined inhibition of focal adhesion kinase and RAF/MEK elicits synergistic inhibition of melanoma growth and reduces metastases.

Journal: Cell reports. Medicine

Status: code on request

[20175] doi:10.1038/s41380-025-02917-1 [paper, data]

βIV spectrin abundancy, cellular distribution and sensitivity to AKT/GSK3 regulation in schizophrenia.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[20176] doi:10.1038/s41398-025-03250-5 [paper]

Genome data based deep learning identified new genes predicting pharmacological treatment response of attention deficit hyperactivity disorder.

Journal: Translational psychiatry

Status: code on request

[20177] doi:10.1038/s41467-025-56640-0 [paper, repository]

How energy determines spatial localisation and copy number of molecules in neurons.

Journal: Nature communications

Authors' code: CompNeuroTchuGroup/energyDeterminesMoleculesCode (no license), Zenodo 14604674 (CC-BY-4.0)

Status: code verified, 70 files readable, 15 matches

[20178] doi:10.1038/s41597-025-04552-5 [paper, repository]

Reach&amp;Grasp: a multimodal dataset of the whole upper-limb during simple and complex movements.

Journal: Scientific data

Authors' code: DarioDiDomenico/SData_ReachGrasp (MIT)

Status: code verified, 13 files readable, 7 matches

[20179] doi:10.1038/s41597-025-04572-1 [paper, repository]

An EEG dataset for interictal epileptiform discharge with spatial distribution information.

Journal: Scientific data

Authors' code: vepiset/vepiset_dataset (no license)

Status: code verified, 14 files readable

[20180] doi:10.1038/s41598-025-88477-4 [paper, repository]

Deep learning-based prediction of autoimmune diseases.

Journal: Scientific reports

Authors' code: solfix/AutoY (BSD-3-Clause)

Status: code verified, 25 files readable, 2 matches

[20181] doi:10.1038/s42003-025-07575-1 [paper, repository]

Searching for the cellular underpinnings of the selective vulnerability to tauopathic insults in Alzheimer's disease.

Journal: Communications biology

Authors' code: Raj-Lab-UCSF/CellTypeVulnerability (MIT), Raj-Lab-UCSF/MISS-Pipeline (MIT), Raj-Lab-UCSF/Brainframe (MIT), Zenodo 14617270 (MIT)

Status: code verified, 140 files readable, 9 matches

[20182] doi:10.1038/s42003-025-07587-x [paper, repository]

Simulating the impact of white matter connectivity on processing time scales using brain network models.

Journal: Communications biology

Authors' code: paul-triebkorn/reservoir_connectivity_timescales (no license), Zenodo 14702465 (CC-BY-4.0), Zenodo 14702464 (CC-BY-4.0)

Status: code verified, 15 files readable, 10 matches

[20183] doi:10.1097/htr.0000000000001016 [paper, repository]

Relationships Between Neighborhood Disadvantage, Race/Ethnicity, and Neurobehavioral Symptoms Among Veterans With Mild Traumatic Brain Injury.

Journal: The Journal of head trauma rehabilitation

Authors' code: links.lww.com/jhtr/a885 (no license)

Status: code verified

[20184] doi:10.1111/cas.70014 [paper, data]

Abnormal Vessels Potentially Accelerate Glioblastoma Proliferation by Inducing the Protumor Activation of Macrophages.

Journal: Cancer science

Status: data only, 1 dataset cited

[20185] doi:10.1111/epi.18293 [paper, repository]

Neural mass modeling reveals that hyperexcitability underpins slow-wave sleep changes in children with epilepsy.

Journal: Epilepsia

Authors' code: domdunstan/Neural_Mass_Modelling_Slow_Wave_Sleep_Dunstan_et_al_2024 (MIT)

Status: code verified, 25 files readable, 5 matches

[20186] doi:10.1126/sciadv.adr6682 [paper, repository]

Imp/IGF2BP and Syp/SYNCRIP temporal RNA interactomes uncover combinatorial networks of regulators of &lt;i&gt;Drosophila&lt;/i&gt; brain development.

Journal: Science advances

Authors' code: aertslab/AUCell (no license), Zenodo 7759440 (other-open), Zenodo 14182350 (CC-BY-4.0)

Status: code verified, 42 files readable, 1 match

[20187] doi:10.1162/imag_a_00465 [paper, repository]

Probing for intentions: The early readiness potential does not reflect awareness of motor preparation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: jgavenas42/ProbeMethodEEG (no license)

Status: code verified, 11 files readable, 5 matches

[20188] doi:10.1186/s12915-025-02127-9 [paper, repository]

Mapping chromatin remodelling in glioblastoma identifies epigenetic regulation of key molecular pathways and novel druggable targets.

Journal: BMC biology

Authors' code: Zenodo 14186449 (CC-BY-4.0), jamesboot/vinel_chip_bmc (no license)

Status: code verified, 34 files readable, 6 matches

[20189] doi:10.1186/s12974-025-03356-z [paper, repository]

Inhibition of tumour necrosis factor alpha by Etanercept attenuates Shiga toxin-induced brain pathology.

Journal: Journal of neuroinflammation

Authors' code: MMV-Lab/immun_analysis (MIT)

Status: code verified, 14 files readable, 3 matches

[20190] doi:10.1186/s13024-025-00806-3 [paper, data]

Disparate and shared transcriptomic signatures associated with cortical atrophy in genetic behavioral variant frontotemporal degeneration.

Journal: Molecular neurodegeneration

Status: data only, 5 datasets cited

[20191] doi:10.1186/s13041-025-01176-z [paper, data]

Transcriptome atlases of rat brain regions and their adaptation to diabetes resolution following gastrectomy in the Goto-Kakizaki rat.

Journal: Molecular brain

Status: data only, 8 datasets cited

[20192] doi:10.1242/jcs.263438 [paper, repository]

Clearing the path for whole-mount labeling and quantification of neuron and vessel density in adipose tissue.

Journal: Journal of cell science

Authors' code: SchweigerLab/TiNeQuant (GPL-3.0), hemaxin/3dvascnet (GPL-3.0), RUB-Bioinf/VesselExpress (GPL-3.0)

Status: code verified, 61 files readable

[20193] doi:10.1371/journal.pcbi.1012747 [paper, repository]

Identifying patterns differing between high-dimensional datasets with generalized contrastive PCA.

Journal: PLoS computational biology

Authors' code: Zenodo 13308211 (MIT), eliezyer/deOliveira_gcPCA_2024 (MIT)

Status: code verified, 22 files readable, 13 matches

[20194] doi:10.1371/journal.pone.0318278 [paper]

Perivascular space imaging during therapy for medulloblastoma.

Journal: PloS one

Status: code on request

[20195] doi:10.2147/jir.s506891 [paper, data]

GPX3 as a Novel and Potential Therapeutic Target in the Shared Molecular Mechanisms of Traumatic Brain Injury and Parkinson's Disease.

Journal: Journal of inflammation research

Status: data only, 1 dataset cited

[20196] doi:10.3389/fnins.2025.1510878 [paper, repository]

Relationship between regional relative theta power and amyloid deposition in mild cognitive impairment: an exploratory study.

Journal: Frontiers in neuroscience

Authors' code: GGonEsc/petpve12 (GPL-3.0)

Status: code verified, 59 files readable, 5 matches

Thursday, 6 February 2025 (22 papers)

[20197] doi:10.1002/glia.24657 [paper, data]

Ibudilast Protects Retinal Bipolar Cells From Excitotoxic Retinal Damage and Activates the mTOR Pathway.

Journal: Glia

Status: data only, 2 datasets cited

[20198] doi:10.1016/j.heliyon.2025.e42521 [paper]

Evaluation of parameters extracted from tissue residue functions in dynamic susceptibility contrast MRI: Healthy volunteers examined during normal breathing and spontaneous hyperventilation.

Journal: Heliyon

Status: code on request

[20199] doi:10.1016/j.isci.2025.111972 [paper]

Fine-tuning of Wnt signaling by RNA surveillance factor Smg5 in the mouse craniofacial development.

Journal: iScience

Status: code on request

[20200] doi:10.1016/j.media.2025.103498 [paper, repository]

Imaging the structural connectome with hybrid MRI-microscopy tractography.

Journal: Medical image analysis

Authors' code: git.fmrib.ox.ac.uk/srq306/hybrid_microscopy_dmri (no license), open.win.ox.ac.uk/pages/srq306 (no license)

Status: code verified

[20201] doi:10.1016/j.omtn.2025.102480 [paper]

A combination of systemic mannitol and mannitol modified polyester nanoparticles for caveolae-mediated gene delivery to the brain.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[20202] doi:10.1016/j.patter.2025.101176 [paper, repository]

Attention heads of large language models.

Journal: Patterns (New York, N.Y.)

Authors' code: IAAR-Shanghai/Awesome-Attention-Heads (no license), Zenodo 14601922 (CC-BY-4.0)

Status: code verified, 2 files readable

[20203] doi:10.1016/j.xpro.2025.103622 [paper, repository]

Protocol to assess changes in brain network resistance to perturbation during offline processing using TMS-EEG.

Journal: STAR protocols

Authors' code: nigelrogasch/TESA (no license), nigelrogasch/dxm_tms-eeg_paper (no license)

Status: code verified, 133 files readable, 6 matches

[20204] doi:10.1038/s41398-025-03268-9 [paper]

Individualized resting-state functional connectivity abnormalities unveil two major depressive disorder subtypes with contrasting abnormal patterns of abnormality.

Journal: Translational psychiatry

Status: code on request

[20205] doi:10.1038/s41467-024-55510-5 [paper]

Moesin integrates cortical and lamellar actin networks during Drosophila macrophage migration.

Journal: Nature communications

Status: code on request

[20206] doi:10.1038/s41467-025-56508-3 [paper, repository]

Acute particulate matter exposure diminishes executive cognitive functioning after four hours regardless of inhalation pathway.

Journal: Nature communications

Authors' code: Zenodo 14231238 (CC-BY-4.0), fahertyt/pm_cognition (no license)

Status: code verified, 18 files readable, 9 matches

[20207] doi:10.1038/s41592-025-02599-1 [paper, repository]

DeepPrep: an accelerated, scalable and robust pipeline for neuroimaging preprocessing empowered by deep learning.

Journal: Nature methods

Authors' code: deepprep.readthedocs.io (no license), pBFSLab/DeepPrep (Apache-2.0), thomasyeolab/cbig (MIT), hub.docker.com/r/pbfslab (no license), codeocean:2579051 (no license)

Status: code verified, 2,088 files readable, 8 matches

[20208] doi:10.1038/s41597-024-04154-7 [paper, repository]

WAND: A multi-modal dataset integrating advanced MRI, MEG, and TMS for multi-scale brain analysis.

Journal: Scientific data

Authors' code: git.cardiff.ac.uk/cubric/wand (no license)

Status: code found, still to be checked

[20209] doi:10.1038/s41598-025-85958-4 [paper, repository]

MCU expression in hippocampal CA2 neurons modulates dendritic mitochondrial morphology and synaptic plasticity.

Journal: Scientific reports

Authors' code: kpannoni/sem-mitos (CC-BY-4.0)

Status: code verified, 6 files readable, 8 matches

[20210] doi:10.1073/pnas.2420356122 [paper]

Contextual neural dynamics during time perception in the primate ventral premotor cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[20211] doi:10.1101/2025.02.05.636661 [paper, data]

Early spatial and contextual coding deficits in hippocampal CA1 precede performance decline in an Alzheimer’s disease model

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[20212] doi:10.1186/s12915-025-02138-6 [paper, data]

RNA helicase MOV10 suppresses fear memory and dendritic arborization and regulates microtubule dynamics in hippocampal neurons.

Journal: BMC biology

Status: data only, 4 datasets cited

[20213] doi:10.1186/s12916-025-03846-0 [paper, repository]

Assessing brain-muscle networks during motor imagery to detect covert command-following.

Journal: BMC medicine

Authors' code: OSF rct3y (no license)

Status: code verified, 7 files readable, 9 matches

[20214] doi:10.1186/s41747-025-00554-5 [paper, repository]

Enhancing deep learning methods for brain metastasis detection through cross-technique annotations on SPACE MRI.

Journal: European radiology experimental

Authors' code: MIC-DKFZ/nnUNet (Apache-2.0)

Status: code verified, 237 files readable

[20215] doi:10.1371/journal.pcbi.1012816 [paper, repository]

Identification of recurrent dynamics in distributed neural populations.

Journal: PLoS computational biology

Authors' code: rosunaor/recurrent_dynamics (no license)

Status: code verified, 14 files readable, 2 matches

[20216] doi:10.1371/journal.pone.0303486 [paper, repository]

The impact of apolipoprotein E, type ∊4 allele on Alzheimer's disease pathological biomarkers: a comprehensive post-mortem pilot-analysis.

Journal: PloS one

Authors' code: Zenodo 13892186 (CC-BY-4.0), gg2399/plos-one-code-sharing (MIT)

Status: code verified, 6 files readable, 1 match

[20217] doi:10.3390/ijms26031387 [paper, repository]

Genetic Diversity and Environmental Adaptation Signatures of the Great Seahorse (&lt;i&gt;Hippocampus kelloggi&lt;/i&gt;) in the Coastal Regions of the Indo-Pacific as Revealed by Whole-Genome Re-Sequencing.

Journal: International journal of molecular sciences

Authors' code: lh3/bwa (GPL-3.0)

Status: code verified, 68 files readable

[20218] doi:10.3390/ph18020217 [paper, repository]

Computational Modeling of Pharmaceuticals with an Emphasis on Crossing the Blood-Brain Barrier.

Journal: Pharmaceuticals (Basel, Switzerland)

Authors' code: ansar390/bbb-pep-prediction (CC0-1.0)

Status: code verified, 8 files readable

Wednesday, 5 February 2025 (27 papers)

[20219] doi:10.1007/s42113-025-00236-w [paper, repository]

Redundancy Gains in Absolute Judgments of Loudness and Brightness.

Journal: Computational brain & behavior

Authors' code: OSF mdfwu (no license), OSF 2yxvf (no license)

Status: code verified, 26 files readable, 2 matches

[20220] doi:10.1016/j.avb.2025.102035 [paper, data]

The dark sides of the brain: A systematic review and meta-analysis of functional neuroimaging studies on trait aggression&lt;sup&gt;☆,☆☆&lt;/sup&gt;.

Journal: Aggression and violent behavior

Status: data only, 2 datasets cited

[20221] doi:10.1016/j.xgen.2025.100768 [paper, repository]

Single-cell delineation of the microbiota-gut-brain axis: Probiotic intervention in Chd8 haploinsufficient mice.

Journal: Cell genomics

Authors' code: neurorestore/Augur (MIT), theislab/paga (BSD-3-Clause)

Status: code verified, 34 files readable, 1 match

[20222] doi:10.1017/s0033291724003489 [paper]

Disrupted functional connectivity of the emotion regulation network in major depressive disorder and its association with symptom improvement: A multisite resting-state functional MRI study.

Journal: Psychological medicine

Status: code on request

[20223] doi:10.1038/s41398-025-03253-2 [paper, repository]

Autism spectrum disorder common variants associated with regional lobe volume variations at birth: cross-sectional study in 273 European term neonates in developing human connectome project.

Journal: Translational psychiatry

Authors' code: lehai-ml/dhcp_genetics (no license), lehai-ml/nimagen (MIT)

Status: code verified, 62 files readable, 7 matches

[20224] doi:10.1038/s41586-024-08504-8 [paper, repository]

A comprehensive spatio-cellular map of the human hypothalamus.

Journal: Nature

Authors' code: lsteuernagel/scIntegration (no license), lsteuernagel/HYPOMAP (no license), georgiedowsett/HYPOMAP (CC-BY-4.0), mrcepid-rap (no license)

Status: code verified, 121 files readable, 26 matches

[20225] doi:10.1038/s41598-025-88671-4 [paper]

Identification of m6A methyltransferase-related WTAP and ZC3H13 predicts immune infiltrates in glioblastoma.

Journal: Scientific reports

Status: data only

[20226] doi:10.1038/s42003-025-07528-8 [paper, repository]

A multimodal characterization of low-dimensional thalamocortical structural connectivity patterns.

Journal: Communications biology

Authors' code: Zenodo 5499504 (no license), cng-lab/cngopen (MIT), micapipe.readthedocs.io (no license), brainspace.readthedocs.io (no license)

Status: code verified, 33 files readable

[20227] doi:10.1038/s44321-024-00179-y [paper]

Microbial metabolites tune amygdala neuronal hyperexcitability and anxiety-linked behaviors.

Journal: EMBO molecular medicine

Status: data only

[20228] doi:10.1093/nc/niaf001 [paper, repository]

The influence of signal strength on conscious and nonconscious neural processing of emotional faces.

Journal: Neuroscience of consciousness

Authors' code: OSF bwzsp (no license)

Status: code verified, 3 files readable, 1 match

[20229] doi:10.1098/rsob.240291 [paper, repository]

Whole organism and tissue-specific analysis of pexophagy in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.7643091 (no license)

Status: code found, still to be checked

[20230] doi:10.1098/rsos.241869 [paper, repository]

The neural substrate of navigation using hydrostatic cues in goldfish.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7618800 (no license)

Status: code found, still to be checked

[20231] doi:10.1098/rspb.2024.2648 [paper, repository]

Parasite spillover rather than niche expansion explains infection of host brain by diplostomid eye flukes.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7587987 (no license), Zenodo 14258201 (MIT)

Status: code verified, 1 file readable, 2 matches

[20232] doi:10.1186/s13020-025-01068-3 [paper, data]

Distinct mechanisms of electroacupuncture and manual acupuncture in modulating hypothalamic GnRH-tanycyte unit function of polycystic ovary syndrome.

Journal: Chinese medicine

Status: data only, 1 dataset cited

[20233] doi:10.1242/jcs.263526 [paper, repository]

Amyloid-β can activate JNK signalling via WNT5A-ROR2 to reduce synapse formation in Alzheimer's disease.

Journal: Journal of cell science

Authors' code: mathyslab7/rosmap_snrnaseq_pfc (no license)

Status: code verified, 186 files readable

[20234] doi:10.1371/journal.pbio.3002702 [paper, repository]

HCNetlas: A reference database of human cell type-specific gene networks to aid disease genetic analyses.

Journal: PLoS biology

Authors' code: Zenodo 14522296 (CC-BY-4.0), netbiolab/HCNetlas (no license)

Status: code verified, 5 files readable, 2 matches

[20235] doi:10.1523/eneuro.0036-23.2025 [paper, repository]

Bell Jar: A Semiautomated Registration and Cell Counting Tool for Mouse Neurohistology Analysis.

Journal: eNeuro

Authors' code: asoronow/belljar (MIT)

Status: code verified, 96 files readable, 7 matches

[20236] doi:10.1523/eneuro.0368-24.2024 [paper, repository]

Neural Speech Tracking Contribution of Lip Movements Predicts Behavioral Deterioration When the Speaker's Mouth Is Occluded.

Journal: eNeuro

Authors' code: reispat/av_speech_mask (no license)

Status: code verified, 5 files readable, 4 matches

[20237] doi:10.1523/jneurosci.1408-24.2024 [paper, repository]

Precuneus Activity during Retrieval Is Positively Associated with Amyloid Burden in Cognitively Normal Older &lt;i&gt;APOE&lt;/i&gt;4 Carriers.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: villeneuvelab/vlpp (MIT), fislarissa/precuneus_retrieval_hyperactivation (MIT)

Status: code verified, 41 files readable, 12 matches

[20238] doi:10.1523/jneurosci.1626-24.2024 [paper, repository]

Perineuronal Nets on CA2 Pyramidal Cells and Parvalbumin-Expressing Cells Differentially Regulate Hippocampal-Dependent Memory.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: tristanstoeber/alexander2024behavioral (CC-BY-4.0)

Status: code verified, 11 files readable, 1 match

[20239] doi:10.3389/fimmu.2025.1512867 [paper, data]

Single-cell sequencing elucidates the mechanism of NUSAP1 in glioma and its diagnostic and prognostic significance.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[20240] doi:10.3389/fnins.2025.1543508 [paper, data]

A composite improved attention convolutional network for motor imagery EEG classification.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[20241] doi:10.3390/diagnostics15030378 [paper, data]

CART-ANOVA-Based Transfer Learning Approach for Seven Distinct Tumor Classification Schemes with Generalization Capability.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[20242] doi:10.3390/diagnostics15030379 [paper, data]

Melatonin Pattern: A New Method for Machine Learning-Based Classification of Sleep Deprivation.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[20243] doi:10.3390/ijerph22020222 [paper, data]

Acute Exposure to Ozone Affects Circulating Estradiol Levels and Gonadotropin Gene Expression in Female Mice.

Journal: International journal of environmental research and public health

Status: data only, 1 dataset cited

[20244] doi:10.3390/jcm14031008 [paper, data]

Deep Learning to Distinguish Edema Secondary to Retinal Vein Occlusion and Diabetic Macular Edema: A Multimodal Approach Using OCT and Infrared Imaging.

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

[20245] doi:10.7554/elife.99988 [paper, data]

Early-life stress induces persistent astrocyte dysfunction associated with fear generalisation.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 4 February 2025 (36 papers)

[20246] doi:10.1002/mrm.30453 [paper, repository]

MPRAGE&lt;sub&gt;like&lt;/sub&gt;: A novel approach to generate T1w images from multi-contrast gradient echo images for brain segmentation.

Journal: Magnetic resonance in medicine

Authors' code: mafortin/mprage-like (Apache-2.0)

Status: code verified, 3 files readable

[20247] doi:10.1007/s00213-025-06749-3 [paper, data]

Exploring the effects of adolescent social isolation stress on the serotonin system and ethanol-motivated behaviors.

Journal: Psychopharmacology

Status: data only, 1 dataset cited

[20248] doi:10.1007/s00439-025-02729-x [paper, data]

Global dysregulation of circular RNAs in frontal cortex and whole blood from DM1 and DM2.

Journal: Human genetics

Status: data only, 1 dataset cited

[20249] doi:10.1016/j.heliyon.2025.e42445 [paper, repository]

A bird's eye view to the homeostatic, Alzheimer and Glioblastoma attractors.

Journal: Heliyon

Authors' code: JoanANievesCuadrado/GB_vs_AD (MIT)

Status: code verified, 5 files readable, 1 match

[20250] doi:10.1016/j.isci.2025.111929 [paper]

Frontal gamma-alpha ratio reveals neural oscillatory mechanism of attention shifting in tinnitus.

Journal: iScience

Status: code on request

[20251] doi:10.1017/s0033291724003362 [paper, repository]

Gray and white matter differences in the medial temporal lobe in late-life depression: a multimodal PET-MRI investigation.

Journal: Psychological medicine

Authors' code: treanus/KUL_NIS (MPL-2.0), mrtrix.org (no license), THOMVDC/PSYPET (no license)

Status: code verified, 139 files readable, 4 matches

[20252] doi:10.1017/s0033291724003490 [paper, repository]

A longitudinal investigation of the relationship between dimensional psychopathology, gray matter structure, and dementia status in older adulthood.

Journal: Psychological medicine

Authors' code: OSF uhds9 (no license)

Status: code verified, 1 file readable, 2 matches

[20253] doi:10.1021/acsptsci.4c00479 [paper, data]

Alcohol Consumption Modulates the Development of Chronic Pain in COVID-19 Patients: A Network Meta-Analysis.

Journal: ACS pharmacology & translational science

Status: data only, 1 dataset cited

[20254] doi:10.1038/s41398-025-03252-3 [paper, repository]

Autism common variants associated with white matter alterations at birth: cross-sectional fixel-based analyses of 221 European term-born neonates from the developing human connectome project.

Journal: Translational psychiatry

Authors' code: lehai-ml/dHCP_genetics (no license), lehai-ml/nimagen (MIT)

Status: code verified, 62 files readable, 20 matches

[20255] doi:10.1038/s41467-024-54858-y [paper, data]

OLIG2 mediates a rare targetable stem cell fate transition in sonic hedgehog medulloblastoma.

Journal: Nature communications

Status: data only, 1 dataset cited

[20256] doi:10.1038/s41467-024-54861-3 [paper, data]

Suppressing recurrence in Sonic Hedgehog subgroup medulloblastoma using the OLIG2 inhibitor CT-179.

Journal: Nature communications

Status: data only, 2 datasets cited

[20257] doi:10.1038/s41467-024-55635-7 [paper, repository]

Multi-omic spatial effects on high-resolution AI-derived retinal thickness.

Journal: Nature communications

Authors' code: phewascatalog.org (no license), OSF kzugv (no license), Zenodo 14202924 (CC-BY-4.0), Zenodo 14199389 (MIT), bahlolab/retinalthicknessgwas (no license)

Status: code verified, 182 files readable, 13 matches

[20258] doi:10.1038/s41467-025-55819-9 [paper, data]

Dendritic excitations govern back-propagation via a spike-rate accelerometer.

Journal: Nature communications

Status: data only, 1 dataset cited

[20259] doi:10.1038/s41467-025-56268-0 [paper, data]

Mapping naturally presented T cell antigens in medulloblastoma based on integrative multi-omics.

Journal: Nature communications

Status: data only, 2 datasets cited

[20260] doi:10.1038/s41467-025-56533-2 [paper, repository]

Atlas of multilineage stem cell differentiation reveals TMEM88 as a developmental regulator of blood pressure.

Journal: Nature communications

Authors' code: ventolab/cellphonedb (MIT), palpant-comp/TRIAGE-Cluster (MIT), palpant-comp/TRIAGE-ParseR (no license)

Status: code verified, 78 files readable, 6 matches

[20261] doi:10.1038/s41467-025-56590-7 [paper, repository]

Phospho-seq: integrated, multi-modal profiling of intracellular protein dynamics in single cells.

Journal: Nature communications

Authors' code: satijalab/seurat (other), stuart-lab/signac (other)

Status: code verified, 196 files readable, 7 matches

[20262] doi:10.1038/s41597-025-04531-w [paper, repository]

Multidimensional dataset for cognitive assessment, sMRI, and rsfMRI in common benign epileptic children.

Journal: Scientific data

Authors' code: UNFmontreal/Dcm2Bids (GPL-3.0)

Status: code verified, 32 files readable, 1 match

[20263] doi:10.1038/s41598-025-87929-1 [paper, repository]

Dynamic multiday seizure cycles and evolving rhythms in a tetanus toxin rat model of epilepsy.

Journal: Scientific reports

Authors' code: ParvinZE/Cycles-in-Epilepsy (no license)

Status: code verified, 2 files readable, 6 matches

[20264] doi:10.1038/s41598-025-88537-9 [paper]

N-Cadherin based adhesion and Rac1 activity regulate tension polarization in the actin cortex.

Journal: Scientific reports

Status: code on request

[20265] doi:10.1038/s42003-024-07442-5 [paper, data]

SARS-CoV-2 ORF3a accessory protein is a water-permeable channel that induces lysosome swelling.

Journal: Communications biology

Status: data only, 2 datasets cited

[20266] doi:10.1038/s43856-025-00754-5 [paper, repository]

Multi-dimensional evidence from the UK Biobank shows the impact of diet and macronutrient intake on aging.

Journal: Communications medicine

Authors' code: maxwell2732/diet_and_aging (no license)

Status: code verified, 3 files readable, 2 matches

[20267] doi:10.1073/pnas.2409423122 [paper, repository]

Intracranial substrates of meditation-induced neuromodulation in the amygdala and hippocampus.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: christinamaher/iEEG_LKM (no license)

Status: code verified, 5 files readable, 6 matches

[20268] doi:10.1073/pnas.2416042122 [paper, data]

Impact of <i>APOE</i>, <i>Klotho,</i> and sex on cognitive decline with aging.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[20269] doi:10.1073/pnas.2416266122 [paper, data]

Fixational eye movements as active sensation for high visual acuity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[20270] doi:10.1085/jgp.202413642 [paper, repository]

ERG responses to high-frequency flickers require FAT3 signaling in mouse retinal bipolar cells.

Journal: The Journal of general physiology

Authors' code: singlecell.broadinstitute.org/single_cell/study (no license)

Status: code verified

[20271] doi:10.1101/2025.01.31.635930 [paper, repository]

Re-evaluating Laminar Specificity of Working Memory in Human Prefrontal Cortex

Journal: bioRxiv (preprint)

Authors' code: OSF txh3s (no license), chrelli/bioRxiv-word-template (GPL-3.0), Cognitive-Neuroscience-Neurotechnology/2025_pfc-layer-wm-replication_7tmri_dchaimow (no license)

Status: code verified, 33 files readable, 6 matches

[20272] doi:10.1109/tmi.2024.3454994 [paper, repository]

Self-Navigated 3D Diffusion MRI Using an Optimized CAIPI Sampling and Structured Low-Rank Reconstruction Estimated Navigator.

Journal: IEEE transactions on medical imaging

Authors' code: liziyu0929/Self-nav_CAIPI (MIT)

Status: code verified, 69 files readable, 2 matches

[20273] doi:10.1117/1.jbo.30.2.026501 [paper]

Acetic acid enabled nuclear contrast enhancement in epi-mode quantitative phase imaging.

Journal: Journal of biomedical optics

Status: code on request

[20274] doi:10.1128/jvi.01413-24 [paper, repository]

Single-cell transcriptomics reveals a compartmentalized antiviral interferon response in the nasal epithelium of mice.

Journal: Journal of virology

Authors' code: snow55/ifn_lambda_in_olfactoryepi (no license)

Status: empty repository, 1 file readable

[20275] doi:10.1162/imag_a_00467 [paper]

Distinguishing microgliosis and tau deposition in the mouse brain using paramagnetic and diamagnetic susceptibility source separation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[20276] doi:10.1186/s12887-024-05367-w [paper, repository]

Associations between media parenting practices and early adolescent consumption of R-rated movies and mature-rated video games.

Journal: BMC pediatrics

Authors' code: jasonmnagata/abcd-study (no license)

Status: code verified, 6 files readable, 1 match

[20277] doi:10.1186/s13293-025-00686-8 [paper, data]

Sex differences in the neuroinflammatory signaling pathway: effect of miRNAs on fatty acid synthesis in microglia.

Journal: Biology of sex differences

Status: data only, 1 dataset cited

[20278] doi:10.1371/journal.pcbi.1012794 [paper, repository]

Contributions of action potentials to scalp EEG: Theory and biophysical simulations.

Journal: PLoS computational biology

Authors' code: niklasbrake/apEEG_modelling (GPL-3.0)

Status: code verified, 131 files readable, 10 matches

[20279] doi:10.1371/journal.pone.0317693 [paper, repository]

Illusory finger stretching and somatosensory responses in participants with chronic hand-based pain.

Journal: PloS one

Authors' code: KJHansford/SSEP_illusory_resizing_cp (no license), OSF yhz6j (no license)

Status: code verified, 5 files readable, 2 matches

[20280] doi:10.3389/fnagi.2025.1535657 [paper, data]

Investigating dynamic brain functional redundancy as a mechanism of cognitive reserve.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[20281] doi:10.3390/molecules30030692 [paper, data]

Molecular Properties of Phosphodiesterase 4 and Its Inhibition by Roflumilast and Cilomilast.

Journal: Molecules (Basel, Switzerland)

Status: data only, 1 dataset cited

Monday, 3 February 2025 (34 papers)

[20282] doi:10.1001/jamanetworkopen.2024.59297 [paper, data]

Mapping Neuroimaging Findings of Creativity and Brain Disease Onto a Common Brain Circuit.

Journal: JAMA network open

Status: data only, 1 dataset cited

[20283] doi:10.1002/imo2.60 [paper, data]

Baihe Dihuang Tang as a therapeutic candidate for insomnia: Targeting gut dysbiosis and neuroendocrine dysfunction.

Journal: iMetaOmics

Status: data only, 1 dataset cited

[20284] doi:10.1016/j.isci.2025.111934 [paper, data]

Correlative multiscale 3D imaging of mouse primary and metastatic tumors by sequential light sheet and confocal fluorescence microscopy.

Journal: iScience

Status: code on request, 1 dataset cited

[20285] doi:10.1038/s12276-025-01397-1 [paper, data]

Serotonin attenuates tumor necrosis factor-induced intestinal inflammation by interacting with human mucosal tissue.

Journal: Experimental & molecular medicine

Status: data only, 1 dataset cited

[20286] doi:10.1038/s41380-025-02905-5 [paper, repository]

Maternal immune activation imprints translational dysregulation and differential MAP2 phosphorylation in descendant neural stem cells.

Journal: Molecular psychiatry

Authors' code: CutillasLab/protools2 (other)

Status: code verified, 22 files readable

[20287] doi:10.1038/s41467-024-55783-w [paper, repository]

Translaminar synchronous neuronal activity is required for columnar synaptic strengthening in the mouse neocortex.

Journal: Nature communications

Authors' code: ackman678/CalciumDX (GPL-2.0)

Status: code verified, 178 files readable, 1 match

[20288] doi:10.1038/s41586-024-08527-1 [paper, repository]

Left-right-alternating theta sweeps in entorhinal-hippocampal maps of space.

Journal: Nature

Authors' code: Zenodo 14548054 (MIT)

Status: code verified, 891 files readable, 28 matches

[20289] doi:10.1038/s41591-024-03453-1 [paper, data]

Bioaccumulation of microplastics in decedent human brains.

Journal: Nature medicine

Status: data only, 1 dataset cited

[20290] doi:10.1038/s41598-024-79023-9 [paper, data]

Dissociative experiences alter resting state functional connectivity after childhood abuse.

Journal: Scientific reports

Status: data only, 1 dataset cited

[20291] doi:10.1038/s41598-025-88492-5 [paper, data]

Synchronization-based graph spatio-temporal attention network for seizure prediction.

Journal: Scientific reports

Status: data only, 2 datasets cited

[20292] doi:10.1038/s41598-025-88660-7 [paper]

Object identity representation occurs early in the archerfish visual system.

Journal: Scientific reports

Status: code on request

[20293] doi:10.1038/s41598-025-88777-9 [paper, data]

Crochet increases attention through a requiring motor skill learning.

Journal: Scientific reports

Status: data only, 2 datasets cited

[20294] doi:10.1038/s42003-025-07517-x [paper, repository]

Mapping and modeling age-related changes in intrinsic neural timescales.

Journal: Communications biology

Authors' code: xiaohajiayouo/Mapping_and_Modeling_Age-Related_Changes-in-_Intrinsic_Neural_Timescales (no license)

Status: code verified, 15 files readable

[20295] doi:10.1038/s42003-025-07588-w [paper, repository]

The medial and lateral orbitofrontal cortex jointly represent the cognitive map of task space.

Journal: Communications biology

Authors' code: OSF cd2t6 (no license)

Status: code verified, 4 files readable, 1 match

[20296] doi:10.1038/s44271-025-00202-z [paper, repository]

Simultaneous tACS-fMRI reveals state- and frequency-specific modulation of hippocampal-cortical functional connectivity.

Journal: Communications psychology

Authors' code: OSF jynz8 (no license)

Status: empty repository

[20297] doi:10.1038/s44321-025-00195-6 [paper, data]

Exploiting metabolic vulnerability in glioblastoma using a brain-penetrant drug with a safe profile.

Journal: EMBO molecular medicine

Status: data only, 2 datasets cited

[20298] doi:10.1073/pnas.2412954122 [paper, repository]

Active vision in freely moving marmosets using head-mounted eye tracking.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Vickey17/UNET_implementation_V2 (no license), doi:10.5061/dryad.8gtht76xb (no license), Vickey17/CEREBRO_HeadPiece (no license)

Status: code verified, 2 files readable

[20299] doi:10.1073/pnas.2413808122 [paper, repository]

Evidence for domain-general arousal from semantic and neuroimaging meta-analyses reconciles opposing views on arousal.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF rv7ja (no license), Zenodo 7870483 (other-open), charlesdedampierre/bunkatech (no license)

Status: code verified, 180 files readable

[20300] doi:10.1093/braincomms/fcaf007 [paper, repository]

Neurovascular phase coherence is altered in Alzheimer's disease.

Journal: Brain communications

Authors' code: luphysics/MODA (GPL-3.0)

Status: code verified, 72 files readable, 4 matches

[20301] doi:10.1109/ojemb.2025.3537768 [paper, repository]

Enabling Model-Based Design for Real-Time Spike Detection.

Journal: IEEE open journal of engineering in medicine and biology

Authors' code: MattiaDif/closed-loop-neuroengineering (MIT)

Status: code verified, 209 files readable, 3 matches

[20302] doi:10.1113/jp286439 [paper, data]

Inhibition of BK channels by GABAb receptors enhances intrinsic excitability of layer 2/3 vasoactive intestinal polypeptide-expressing interneurons in mouse neocortex.

Journal: The Journal of physiology

Status: data only, 1 dataset cited

[20303] doi:10.1128/msphere.00887-24 [paper, data]

Modulatory impact of &lt;i&gt;Bifidobacterium longum&lt;/i&gt; subsp. &lt;i&gt;longum&lt;/i&gt; BL21 on the gut-brain-ovary axis in polycystic ovary syndrome: insights into metabolic regulation, inflammation mitigation, and neuroprotection.

Journal: mSphere

Status: data only, 1 dataset cited

[20304] doi:10.1155/ijta/3946740 [paper, data]

Threats and Mitigation Strategies for Electroencephalography-Based Person Authentication.

Journal: International journal of telemedicine and applications

Status: data only, 3 datasets cited

[20305] doi:10.1162/imag_a_00456 [paper, repository]

Normative trajectories of R &lt;sub&gt;1&lt;/sub&gt; , R &lt;sub&gt;2&lt;/sub&gt; *, and magnetic susceptibility in basal ganglia on healthy ageing.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Donders-Institute/MP2RAGE-related-scripts (GPL-3.0), personalizedparkinsonproject.com/home/data (no license)

Status: code verified, 39 files readable, 2 matches

[20306] doi:10.1162/imag_a_00460 [paper, repository]

The Gaussian-linear hidden Markov model: A Python package.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: vidaurre/glhmm (GPL-3.0), CFIN-analysis/GLHMM_paper (no license), OSF 8qcyj (no license)

Status: code verified, 47 files readable

[20307] doi:10.1162/imag_a_00461 [paper, repository]

Localizing hierarchical prediction errors and precisions during an oddball task with volatility: Computational insights and relationship with psychosocial functioning in healthy individuals.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: colleenc11/COMPI_MMN (no license)

Status: code verified, 434 files readable, 11 matches

[20308] doi:10.1192/bjp.2024.259 [paper, repository]

Neural processes linking joint hypermobility and anxiety: key roles for the amygdala and insular cortex.

Journal: The British journal of psychiatry : the journal of mental science

Authors' code: OSF tcemx (no license)

Status: empty repository

[20309] doi:10.1371/journal.pone.0303390 [paper, data]

Comparing P300 flashing paradigms in online typing with language models.

Journal: PloS one

Status: data only, 1 dataset cited

[20310] doi:10.1371/journal.pone.0316125 [paper, data]

Neuronal oscillations and functional connectivity of paced nostril breathing: A high-density EEG study.

Journal: PloS one

Status: data only, 1 dataset cited

[20311] doi:10.3389/fpsyt.2024.1513793 [paper, repository]

Specific endophenotypes in EEG microstates for methamphetamine use disorder.

Journal: Frontiers in psychiatry

Authors' code: rkuplicki/LIBR_MOCD (no license)

Status: code verified, 26 files readable

[20312] doi:10.3390/s25030921 [paper, repository]

Open-Source Algorithm for Automated Vigilance State Classification Using Single-Channel Electroencephalogram in Rodents.

Journal: Sensors (Basel, Switzerland)

Authors' code: sykesva/SAGER (no license)

Status: code verified, 3 files readable, 8 matches

[20313] doi:10.7554/elife.87078 [paper, repository]

Live imaging of excitable axonal microdomains in ankyrin-G-GFP mice.

Journal: eLife

Authors' code: Zenodo 4264831 (other-open)

Status: code verified, 92 files readable

[20314] doi:10.7554/elife.87527 [paper, repository]

Dendritic growth and synaptic organization from activity-independent cues and local activity-dependent plasticity.

Journal: eLife

Authors' code: comp-neural-circuits/dendritic-growth (CC-BY-4.0)

Status: code verified, 115 files readable, 8 matches

[20315] doi:10.7554/elife.89421 [paper, repository]

An emerging view of neural geometry in motor cortex supports high-performance decoding.

Journal: eLife

Authors' code: seanmperkins/mint (other), seanmperkins/bci-decoders (GPL-3.0), briandepasquale/factor-based-spiking-nets (Apache-2.0), neurallatents/nlb_tools (MIT)

Status: code verified, 84 files readable, 23 matches

Sunday, 2 February 2025 (4 papers)

[20316] doi:10.1038/s41467-025-56405-9 [paper, repository]

Hybrid neural networks for continual learning inspired by corticohippocampal circuits.

Journal: Nature communications

Authors' code: qqish/CH-HNN (MIT), Zenodo 14406003 (MIT)

Status: code verified, 54 files readable, 4 matches

[20317] doi:10.1038/s41467-025-56543-0 [paper, repository]

Deep learning to decode sites of RNA translation in normal and cancerous tissues.

Journal: Nature communications

Authors' code: TRISTAN-ORF/RiboTIE (MIT)

Status: empty repository, 2 files readable

[20318] doi:10.1111/acer.15532 [paper, repository]

Neural correlates of choosing alcohol over a palatable food reward in humans.

Journal: Alcohol, clinical & experimental research

Authors' code: NeuroIP/CCAF (no license)

Status: code verified, 2 files readable

[20319] doi:10.1186/s12974-024-03318-x [paper, data]

CCL21-CCR7 blockade prevents neuroinflammation and degeneration in Parkinson's disease models.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

Saturday, 1 February 2025 (89 papers, 65 on this page)

[20320] doi:10.1002/alz.14501 [paper, repository]

A brain DNA co-methylation network analysis of psychosis in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: UoE-Dementia-Genomics/AD-Psychosis-WGCNA (no license)

Status: code verified, 38 files readable, 10 matches

[20321] doi:10.1002/alz.14595 [paper, repository]

Human herpesvirus-associated transposable element activation in human aging brains with Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: ChengF-Lab/alzTE-HHV (MIT)

Status: code verified, 14 files readable, 6 matches

[20322] doi:10.1002/alz.14600 [paper, repository]

Machine learning prediction of tau-PET in Alzheimer's disease using plasma, MRI, and clinical data.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: DeMONLab-BioFINDER/karlsson-predict-taupet (no license)

Status: code verified, 6 files readable, 8 matches

[20323] doi:10.1002/brb3.70299 [paper, repository]

A Neural Network Approach to Identify Left-Right Orientation of Anatomical Brain MRI.

Journal: Brain and behavior

Authors' code: OishiLab/LatNet (BSD-3-Clause)

Status: code verified, 9 files readable, 2 matches

[20324] doi:10.1002/brb3.70321 [paper]

Somatosensory-Thalamic Functional Dysconnectivity Associated With Poststroke Motor Function Rehabilitation: A Resting-State fMRI Study.

Journal: Brain and behavior

Status: code on request

[20325] doi:10.1002/cnm.70012 [paper, repository]

Computation of Viscoelastic Shear Shock Waves Using Finite Volume Schemes With Artificial Compressibility.

Journal: International journal for numerical methods in biomedical engineering

Authors' code: harold-berjamin/SoftSol3D (MIT)

Status: code verified, 19 files readable, 1 match

[20326] doi:10.1002/hbm.26806 [paper, repository]

Measuring the effects of motion corruption in fetal fMRI.

Journal: Human brain mapping

Authors' code: cirmuw/fetalfMRIproc (MIT)

Status: code verified, 25 files readable, 9 matches

[20327] doi:10.1002/hbm.70049 [paper, repository]

Infraslow Dynamic Patterns in Human Cortical Networks Track a Spectrum of External to Internal Attention.

Journal: Human brain mapping

Authors' code: BnzYsf/QPP_Scripts_v0620 (no license), fcp-indi.github.io (no license)

Status: code verified

[20328] doi:10.1002/hbm.70073 [paper, repository]

Whole Brain MRI Assessment of Age and Sex-Related R2* Changes in the Human Fetal Brain.

Journal: Human brain mapping

Authors' code: Zenodo 14051966 (CC-BY-4.0), Zenodo 13905953 (CC-BY-4.0), Zenodo 17109779 (CC-BY-4.0)

Status: code verified

[20329] doi:10.1002/hbm.70089 [paper, repository]

Grey-Matter Structure Markers of Alzheimer's Disease, Alzheimer's Conversion, Functioning and Cognition: A Meta-Analysis Across 11 Cohorts.

Journal: Human brain mapping

Authors' code: nikitas-k/neuroshape-dev (BSD-3-Clause), baptisteCD (no license)

Status: code verified, 75 files readable, 2 matches

[20330] doi:10.1002/hbm.70125 [paper, repository]

TR(Acking) Individuals Down: Exploring the Effect of Temporal Resolution in Resting-State Functional MRI Fingerprinting.

Journal: Human brain mapping

Authors' code: eamico (no license), rudyvdbrink/Surface_projection (GPL-3.0), CIMeC-MRI-Lab (no license)

Status: code verified, 37 files readable

[20331] doi:10.1002/hbm.70136 [paper, repository]

χ-sepnet: Deep Neural Network for Magnetic Susceptibility Source Separation.

Journal: Human brain mapping

Authors' code: SNU-LIST/chi_sepnet (other), SNU-LIST/chi-separation (no license), Zenodo 22091347 (other-closed), Zenodo 22809278 (other-closed), Zenodo 22091348 (other-closed)

Status: code verified, 17 files readable, 9 matches

[20332] doi:10.1002/hbm.70139 [paper, repository]

Reward Decision Network Disconnection in Poststroke Apathy: A Prospective Multimodality Imaging Study.

Journal: Human brain mapping

Authors' code: fyr12345/RDN-and-PSA (no license)

Status: code verified, 5 files readable, 2 matches

[20333] doi:10.1002/hbm.70140 [paper, repository]

Biases in Volumetric Versus Surface Analyses in Population Receptive Field Mapping.

Journal: Human brain mapping

Authors' code: OSF seh6b (no license), vistalab/vistadisp (no license), noahbenson/neuropythy (AGPL-3.0), vistalab/vistasoft (no license), dlinhardt/prfclass (Apache-2.0), garikoitz/prf2d3d (MIT), noahbenson/cortical-magnification-tutorial (GPL-3.0)

Status: code verified, 2,866 files readable, 9 matches

[20334] doi:10.1002/hbm.70146 [paper, data]

Frontopolar Cortex Interacts With Dorsolateral Prefrontal Cortex to Causally Guide Metacognition.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[20335] doi:10.1002/hbm.70148 [paper, repository]

Pseudo-MRI Engine for MRI-Free Electromagnetic Source Imaging.

Journal: Human brain mapping

Authors' code: neurosignal/pseudo-MRI-engine (BSD-3-Clause)

Status: code verified, 17 files readable, 10 matches

[20336] doi:10.1002/hbm.70149 [paper, repository]

Understanding the Link Between Functional Profiles and Intelligence Through Dimensionality Reduction and Graph Analysis.

Journal: Human brain mapping

Authors' code: alberti-f (no license)

Status: code verified

[20337] doi:10.1002/hbm.70150 [paper, data]

Pattern Separation and Pattern Completion Within the Hippocampal Circuit During Naturalistic Stimuli.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[20338] doi:10.1002/hbm.70151 [paper, repository]

From Big Data to the Clinic: Methodological and Statistical Enhancements to Implement the UK Biobank Imaging Framework in a Memory Clinic.

Journal: Human brain mapping

Authors' code: git.fmrib.ox.ac.uk/open-science/analysis (no license), git.fmrib.ox.ac.uk/falmagro/uk_biobank_pipeline_v_1.5 (no license), git.fmrib.ox.ac.uk/gillisc/01_bhc_imaging.git (no license), Zenodo 6598036 (CC-BY-4.0)

Status: code verified

[20339] doi:10.1002/hbm.70152 [paper, repository]

Decoding in the Fourth Dimension: Classification of Temporal Patterns and Their Generalization Across Locations.

Journal: Human brain mapping

Authors' code: csea-lab/time-GAL (GPL-3.0), OSF q56ns (no license)

Status: code verified, 20 files readable, 2 matches

[20340] doi:10.1002/hbm.70156 [paper, data]

Relating Functional Connectivity and Alcohol Use Disorder: A Systematic Review and Derivation of Relevance Maps for Regions and Connections.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[20341] doi:10.1002/hbm.70158 [paper, data]

Transdiagnostic Connectome-Based Prediction of Response Inhibition.

Journal: Human brain mapping

Status: data only, 3 datasets cited

[20342] doi:10.1002/hbm.70160 [paper, repository]

Temporal Interference Stimulation Boosts Working Memory Performance in the Frontoparietal Network.

Journal: Human brain mapping

Authors' code: sourceforge.net/marsbar (no license)

Status: code verified

[20343] doi:10.1002/hbm.70164 [paper, repository]

Stimulus Selection Influences Prediction of Individual Phenotypes in Naturalistic Conditions.

Journal: Human brain mapping

Authors' code: xuanli-ac/TOPF_movie_selection (MIT), xuanli-ac/TOPF (no license)

Status: code verified, 48 files readable, 17 matches

[20344] doi:10.1002/jcsm.13742 [paper, repository]

Cachexia Alters Central Nervous System Morphology and Functionality in Cancer Patients.

Journal: Journal of cachexia, sarcopenia and muscle

Authors' code: amphybio/Simoes2024 (MIT)

Status: code verified, 10 files readable

[20345] doi:10.1002/jev2.70043 [paper, repository]

Metabolic Profiling of Brain Tissue and Brain-Derived Extracellular Vesicles in Alzheimer's Disease.

Journal: Journal of extracellular vesicles

Authors' code: Biospec/cluster-toolbox-v2.0 (GPL-3.0)

Status: code verified, 110 files readable, 2 matches

[20346] doi:10.1002/nbm.5311 [paper]

Concentric Ring Trajectory Sampling With k-Space Reordering Enables Assessment of Tissue-Specific T&lt;sub&gt;1&lt;/sub&gt; and T&lt;sub&gt;2&lt;/sub&gt; Relaxation for &lt;sup&gt;2&lt;/sup&gt;H-Labeled Substrates in the Human Brain at 7 T.

Journal: NMR in biomedicine

Status: code on request

[20347] doi:10.1002/sim.10324 [paper, repository]

Supervised Functional Principal Component Analysis Under the Mixture Cure Rate Model: An Application to Alzheimer'S Disease.

Journal: Statistics in medicine

Authors' code: jiahfeng/sFPCAcure (no license)

Status: code verified, 3 files readable, 4 matches

[20348] doi:10.1007/s00221-024-06988-4 [paper, repository]

Stimulus conditions eliciting sneezing in response to bright light.

Journal: Experimental brain research

Authors' code: tscnlab/TrinklEtAl_ExpBrainRes_2025 (CC-BY-4.0)

Status: empty repository, 2 files readable

[20349] doi:10.1007/s10334-024-01222-2 [paper, repository]

Deep learning initialized compressed sensing (Deli-CS) in volumetric spatio-temporal subspace reconstruction.

Journal: Magma (New York, N.Y.)

Authors' code: SetsompopLab/deli-cs (BSD-3-Clause), SetsompopLab/MRF (BSD-3-Clause), Zenodo 7734431 (BSD-3-Clause), Zenodo 7703200 (BSD-3-Clause), Zenodo 7697373 (BSD-3-Clause)

Status: code verified, 33 files readable, 11 matches

[20350] doi:10.1007/s10827-025-00896-4 [paper, data]

Temporal pavlovian conditioning of a model spiking neural network for discrimination sequences of short time intervals.

Journal: Journal of computational neuroscience

Status: code on request, 1 dataset cited

[20351] doi:10.1007/s12311-025-01787-1 [paper]

Cerebellar Oscillatory Patterns in Essential Tremor: Modulatory Effects of VIM-DBS.

Journal: Cerebellum (London, England)

Status: code on request

[20352] doi:10.1016/j.crmeth.2025.100989 [paper, repository]

Efficient cell-wide mapping of mitochondria in electron microscopic volumes using webKnossos.

Journal: Cell reports methods

Authors' code: Zenodo 14742225 (CC-BY-4.0), zudi-lin/pytorch_connectomics (MIT), scalableminds/webknossos-libs (no license), jiangyi0311/mito-segem (no license)

Status: code verified, 671 files readable, 6 matches

[20353] doi:10.1016/j.isci.2025.111940 [paper, data]

Mrgprb4-lineage neurons indispensable in pressure induced pleasant sensation are polymodal.

Journal: iScience

Status: code on request, 1 dataset cited

[20354] doi:10.1016/j.nbd.2025.106819 [paper, data]

B cells upregulate NMDARs, respond to extracellular glutamate, and express mature BDNF to protect the brain from ischemic injury.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[20355] doi:10.1016/j.neuroimage.2025.121045 [paper, repository]

Deep-ER: Deep Learning ECCENTRIC Reconstruction for fast high-resolution neurometabolic imaging.

Journal: NeuroImage

Authors' code: weiserjpaul/Deep-ER (no license)

Status: code verified, 11 files readable, 1 match

[20356] doi:10.1016/j.softx.2025.102076 [paper, repository]

PSGpower: A MATLAB toolbox for analyzing sleep EEG data.

Journal: SoftwareX

Authors' code: afitzroy/psgpower (GPL-3.0)

Status: code verified, 82 files readable, 6 matches

[20357] doi:10.1038/s41467-024-54721-0 [paper, repository]

Bidirectional relationship between epigenetic age and stroke, dementia, and late-life depression.

Journal: Nature communications

Authors' code: CypRiv/genal (GPL-3.0)

Status: code verified, 20 files readable, 5 matches

[20358] doi:10.1038/s41540-025-00493-2 [paper, data]

Network analyses of brain tumor multiomic data reveal pharmacological opportunities to alter cell state transitions.

Journal: NPJ systems biology and applications

Status: code on request, 1 dataset cited

[20359] doi:10.1038/s41598-025-88248-1 [paper, data]

Multi-branch convolutional neural network with cross-attention mechanism for emotion recognition.

Journal: Scientific reports

Status: data only, 1 dataset cited

[20360] doi:10.1093/cercor/bhaf007 [paper]

Developmental maturation of millimeter-scale functional networks across brain areas.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[20361] doi:10.1093/cercor/bhaf011 [paper, repository]

Bifocal tACS over the primary sensorimotor cortices increases interhemispheric inhibition and improves bimanual dexterity.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF exf54 (no license)

Status: code verified, 5 files readable, 2 matches

[20362] doi:10.1093/europace/euae223 [paper, data]

A computational study on the influence of antegrade accessory pathway location on the 12-lead electrocardiogram in Wolff-Parkinson-White syndrome.

Journal: Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology

Status: data only, 1 dataset cited

[20363] doi:10.1093/g3journal/jkae293 [paper, data]

Divergence in expression of a singing-related neuroplasticity gene in the brains of 2 Ficedula flycatchers and their hybrids.

Journal: G3 (Bethesda, Md.)

Status: data only, 1 dataset cited

[20364] doi:10.1093/jnen/nlae120 [paper, repository]

A machine learning approach to automate microinfarct and microhemorrhage screening in hematoxylin and eosin-stained human brain tissues.

Journal: Journal of neuropathology and experimental neurology

Authors' code: ucdrubinet/Infarct (no license)

Status: code verified, 5 files readable, 7 matches

[20365] doi:10.1093/jnen/nlae123 [paper, repository]

Deep learning-based classifier for carcinoma of unknown primary using methylation quantitative trait loci.

Journal: Journal of neuropathology and experimental neurology

Authors' code: a-dev-walker/CUP_Methylation_Classifier (MIT)

Status: code verified, 5 files readable, 3 matches

[20366] doi:10.1093/molbev/msaf020 [paper, data]

Cross-Species Insights from Single-Nucleus Sequencing Highlight Aging-Related Hippocampal Features in Tree Shrew.

Journal: Molecular biology and evolution

Status: data only, 1 dataset cited

[20367] doi:10.1093/nar/gkaf098 [paper, repository]

Shiba: a versatile computational method for systematic identification of differential RNA splicing across platforms.

Journal: Nucleic acids research

Authors' code: timbitz/whippet.jl (MIT), Zenodo 14713893 (MIT), sika-zheng-lab/shiba (MIT)

Status: code verified, 92 files readable, 10 matches

[20368] doi:10.1093/nar/gkaf178 [paper]

DNA damage response regulator ATR licenses PINK1-mediated mitophagy.

Journal: Nucleic acids research

Status: data only

[20369] doi:10.1093/neuonc/noae206 [paper, data]

EZH2 functional dichotomy in reactive oxygen species-stratified glioblastoma.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[20370] doi:10.1093/ptj/pzae148 [paper, data]

Modeling Upper Limb Rehabilitation-Induced Recovery After Stroke: The Role of Attention as a Clinical Confounder.

Journal: Physical therapy

Status: data only, 2 datasets cited

[20371] doi:10.1093/scan/nsaf008 [paper, data]

Changes in interpersonal distance modulate social attention engagement: evidence from EEG alpha band suppression.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[20372] doi:10.1093/scan/nsaf009 [paper, data]

Cognitive and neural underpinnings of friend-prioritization in a perceptual matching task.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[20373] doi:10.1093/scan/nsaf011 [paper, repository]

Atypical attentional network dynamics in adolescent depression during emotional movie viewing.

Journal: Social cognitive and affective neuroscience

Authors' code: juanitacabral/LEiDA (no license)

Status: code verified, 45 files readable, 4 matches

[20374] doi:10.1093/sleep/zsae218 [paper]

A spectrum of altered non-rapid eye movement sleep in schizophrenia.

Journal: Sleep

Status: code on request

[20375] doi:10.1093/stcltm/szae090 [paper, data]

Assessment of immune modulation strategies to enhance survival and integration of human neural progenitor cells in rodent models of spinal cord injury.

Journal: Stem cells translational medicine

Status: data only, 1 dataset cited

[20376] doi:10.1096/fj.202402622r [paper, data]

ALZ-801 prevents amyloid β-protein assembly and reduces cytotoxicity: A preclinical experimental study.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[20377] doi:10.1096/fj.202402677rr [paper, data]

Dolutegravir induces endoplasmic reticulum stress at the blood-brain barrier.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[20378] doi:10.1111/cns.70238 [paper, data]

Astaxanthin Inhibits Ferroptosis of Hippocampal Neurons in Kainic Acid-Induced Epileptic Mice by Activating the Nrf2/GPX4 Signaling Pathway.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[20379] doi:10.1111/cns.70255 [paper, repository]

Discovery of Novel Pain Regulators Through Integration of Cross-Species High-Throughput Data.

Journal: CNS neuroscience & therapeutics

Authors' code: taiyun/corrplot (other)

Status: code verified, 23 files readable

[20380] doi:10.1111/cns.70272 [paper, repository]

Age-Specific Functional Connectivity Changes After Partial Sleep Deprivation Are Correlated With Neurocognitive and Molecular Signatures.

Journal: CNS neuroscience & therapeutics

Authors' code: frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 7 files readable

[20381] doi:10.1111/cns.70277 [paper, repository]

Analysis of Two Neuroanatomical Subtypes of Parkinson's Disease and Their Motor Progression Based on Semi-Supervised Machine Learning.

Journal: CNS neuroscience & therapeutics

Authors' code: markvcid.partners.org/markvcid1-protocol-resources (no license)

Status: code found, still to be checked

[20382] doi:10.1111/cns.70282 [paper, data]

Ntoco Promotes Ferroptosis via Hnrnpab-Mediated NF-κB/Lcn2 Axis Following Traumatic Brain Injury in Mice.

Journal: CNS neuroscience & therapeutics

Status: data only, 2 datasets cited

[20383] doi:10.1111/ejn.70001 [paper, data]

Network Segregation and Integration Changes in Healthy Aging: Evidence From EEG Subbands During the Visual Short-Term Memory Binding Task.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[20384] doi:10.1111/ejn.70027 [paper, repository]

EEG Correlates of Cognitive Dynamics in Task Resumption After Interruptions: The Impact of Available Time and Flexibility.

Journal: The European journal of neuroscience

Authors' code: OSF qw94r (no license)

Status: code verified, 8 files readable, 10 matches

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