Every paper, by date: page 92

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 92 of 200: 1 February 2025 to 24 January 2025.

Saturday, 1 February 2025 (89 papers, 24 on this page)

[20385] doi:10.1111/ene.70018 [paper]

Relationship of left piriform cortex network centrality with temporal lobe epilepsy duration and drug resistance.

Journal: European journal of neurology

Status: code on request

[20386] doi:10.1111/ene.70052 [paper]

Multifaceted Biomarkers Suggest a Similar Profile of CNS Pathology in Relapsing and Progressive MS.

Journal: European journal of neurology

Status: code on request

[20387] doi:10.1111/ene.70054 [paper, repository]

Brain Iron Alteration in Pediatric Tourette Syndrome: A Quantitative Susceptibility Mapping Study.

Journal: European journal of neurology

Authors' code: sandywang/gretna (GPL-3.0)

Status: code verified, 453 files readable

[20388] doi:10.1111/jnc.70008 [paper]

Challenges and Opportunities in Exploring Non-Motor Symptoms in 6-Hydroxydopamine Models of Parkinson's Disease: A Systematic Review.

Journal: Journal of neurochemistry

Status: code on request

[20389] doi:10.1111/nyas.15291 [paper, data]

Neurostimulation improves reading and alters communication within reading networks in dyslexia.

Journal: Annals of the New York Academy of Sciences

Status: data only, 1 dataset cited

[20390] doi:10.1111/psyp.70002 [paper, repository]

Mapping 60 Years of Psychophysiology: A Bibliometric Analysis of Journal Performance, Authorship Trends, and Thematic Evolution.

Journal: Psychophysiology

Authors' code: OSF 6t4u5 (no license)

Status: code verified, 10 files readable, 6 matches

[20391] doi:10.1111/psyp.70016 [paper, repository]

Comparing Manual and Automatic Artifact Detection in Sleep EEG Recordings.

Journal: Psychophysiology

Authors' code: Zenodo 7934586 (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[20392] doi:10.1111/psyp.70018 [paper, data]

The Interplay Between Multisensory Processing and Attention in Working Memory: Behavioral and Neural Indices of Audiovisual Object Storage.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[20393] doi:10.1111/psyp.70020 [paper, data]

Behaviorally Irrelevant Feature Matching Increases Neural and Behavioral Working Memory Readout.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[20394] doi:10.1111/psyp.70023 [paper, data]

Hidden Brain States Reveal the Temporal Dynamics of Neural Oscillations During Metaphor Generation and Their Role in Verbal Creativity.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[20395] doi:10.1117/1.jbo.30.s2.s23907 [paper]

Effects of wavelength and spinal cord injury segment on photobiomodulation efficacy: Monte Carlo simulation in a rat model.

Journal: Journal of biomedical optics

Status: code verified

[20396] doi:10.1117/1.jbo.30.s2.s23910 [paper, repository]

Mapping functional hemodynamic and metabolic responses to dementia: a broadband spectroscopy pilot study.

Journal: Journal of biomedical optics

Authors' code: figshare 29222378 (CC-BY-4.0)

Status: code verified, 6 files readable, 5 matches

[20397] doi:10.1117/1.jbo.30.s2.s23912 [paper, repository]

Diffuse optical tomography system for acute traumatic brain injury in the intensive care unit: a prospective study on healthy volunteers.

Journal: Journal of biomedical optics

Authors' code: kylemath/nomad (no license), figshare 25866682 (CC-BY-4.0)

Status: code verified, 33 files readable, 3 matches

[20398] doi:10.1158/2159-8290.cd-23-1336 [paper, repository]

Glioblastoma Cortical Organoids Recapitulate Cell-State Heterogeneity and Intercellular Transfer.

Journal: Cancer discovery

Authors' code: rchanoch/Glioblastoma-cortical-organoids (no license)

Status: code verified, 3 files readable, 5 matches

[20399] doi:10.1158/2767-9764.crc-24-0386 [paper, data]

Loss of NF1 Accelerates Uveal and Intradermal Melanoma Tumorigenesis, and Oncogenic GNAQ Transforms Schwann Cells.

Journal: Cancer research communications

Status: data only, 1 dataset cited

[20400] doi:10.1167/jov.25.2.3 [paper, repository]

Target identification under high levels of amplitude, size, orientation and background uncertainty.

Journal: Journal of vision

Authors' code: CanOluk/Target_Identification (no license)

Status: code verified, 35 files readable, 7 matches

[20401] doi:10.1182/blood.2024026066 [paper, data]

BRAFV600E induces key features of LCH in iPSCs with cell type-specific phenotypes and drug responses.

Journal: Blood

Status: data only, 1 dataset cited

[20402] doi:10.1186/s12967-024-05938-6 [paper]

HEDDI-Net: heterogeneous network embedding for drug-disease association prediction and drug repurposing, with application to Alzheimer's disease.

Journal: Journal of translational medicine

Status: code on request

[20403] doi:10.1186/s13195-025-01679-w [paper, data]

Rotation errors in path integration are associated with Alzheimer's disease tau pathology: a cross-sectional study.

Journal: Alzheimer's research & therapy

Status: data only, 2 datasets cited

[20404] doi:10.18699/vjgb-25-19 [paper, data]

Computer reconstruction of gene networks controlling anxiety levels in humans and laboratory mice.

Journal: Vavilovskii zhurnal genetiki i selektsii

Status: data only, 1 dataset cited

[20405] doi:10.3390/bs15020163 [paper]

Effects of Closed Mouth vs. Exposed Teeth on Facial Expression Processing: An ERP Study.

Journal: Behavioral sciences (Basel, Switzerland)

Status: code on request

[20406] doi:10.3390/cancers17030478 [paper, data]

Radiomic Fingerprinting of the Peritumoral Edema in Brain Tumors.

Journal: Cancers

Status: data only, 1 dataset cited

[20407] doi:10.36131/cnfioritieditore20250107 [paper, data]

The Effect of Transcranial Direct Current Stimulation (TDCS) on Cognitive Functioning in Individuals with Attention Deficit/Hyperactivity Disorder (ADHD).

Journal: Clinical neuropsychiatry

Status: data only, 1 dataset cited

[20408] doi:10.5694/mja2.52594 [paper, repository]

Social inequalities in eligibility rates and use of the Australian National Disability Insurance Scheme, 2016-22: an administrative data analysis.

Journal: The Medical journal of Australia

Authors' code: YiYang368/NDIS_Inequalities (no license)

Status: code verified, 3 files readable, 1 match

Friday, 31 January 2025 (26 papers)

[20409] doi:10.1016/j.isci.2025.111935 [paper]

SENP2-based N-terminal truncation of α-synuclein in Lewy pathology propagation.

Journal: iScience

Status: code on request

[20410] doi:10.1016/j.isci.2025.111936 [paper, repository]

Formation of brain-wide neural geometry during visual item recognition in monkeys.

Journal: iScience

Authors' code: supp:PMC11875189/mmc4.zip (no license)

Status: code verified, 9 files readable, 1 match

[20411] doi:10.1016/j.nicl.2025.103747 [paper, repository]

Post-stroke outcome prediction based on lesion-derived features.

Journal: NeuroImage. Clinical

Authors' code: Maedehkh/Post-Stroke-Deficit-Prediction (no license)

Status: code verified, 6 files readable, 1 match

[20412] doi:10.1038/s41386-025-02059-6 [paper, repository]

Childhood family environment and μ-opioid receptor availability in vivo in adulthood.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: tkkarjal/magia (MIT)

Status: code verified, 172 files readable, 2 matches

[20413] doi:10.1038/s41398-025-03261-2 [paper, data]

SIV infection induces alterations in gene expression and loss of interneurons in Rhesus Macaque frontal cortex during early systemic infection.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[20414] doi:10.1038/s41597-024-04227-7 [paper, repository]

Simultaneous Dataset of Brain, Eye and Hand during Visuomotor Tasks.

Journal: Scientific data

Authors' code: Chenguang918/visuomotor (MIT)

Status: code verified, 321 files readable, 8 matches

[20415] doi:10.1038/s41598-025-87978-6 [paper, repository]

Identification of an additional periplanone receptor family gene preferentially expressed in the male antennae of the American cockroach.

Journal: Scientific reports

Authors' code: mdbaron42/pyBoxshade (GPL-3.0)

Status: code verified, 6 files readable

[20416] doi:10.1038/s42003-024-07318-8 [paper, data]

GABAergic neurons in basal forebrain exert frequency-specific modulation on auditory cortex and enhance attentional selection of auditory stimuli.

Journal: Communications biology

Status: data only, 1 dataset cited

[20417] doi:10.1038/s42003-025-07563-5 [paper]

Decoding dynamic faces and scenes without awareness under dis-continuous flash suppression.

Journal: Communications biology

Status: code on request

[20418] doi:10.1073/pnas.2404017121 [paper, repository]

Cryo-ET suggests tubulin chaperones form a subset of microtubule lumenal particles with a role in maintaining neuronal microtubules.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: williamnwan/TOMOMAN (no license), anmartinezs/pyseg_system (Apache-2.0)

Status: code verified, 1,891 files readable

[20419] doi:10.1089/neur.2024.0094 [paper, repository]

Structural Magnetic Resonance Imaging Brain Age Investigation in Athletes with Persistent Postconcussion Syndrome.

Journal: Neurotrauma reports

Authors' code: tobias-kaufmann/brainage (no license), Zenodo 8436509 (other-open), unfmontreal/dcm2bids (GPL-3.0)

Status: code verified, 62 files readable, 1 match

[20420] doi:10.1126/sciadv.adr4038 [paper, repository]

Touch-evoked traveling waves establish a translaminar spacetime code.

Journal: Science advances

Authors' code: mullerlab.github.io (no license), mullerlab/generalized-phase (GPL-3.0), Zenodo 13958732 (CC-BY-4.0)

Status: code verified, 46 files readable, 18 matches

[20421] doi:10.1162/imag_a_00446 [paper, data]

FastSurfer-LIT: Lesion inpainting tool for whole-brain MRI segmentation with tumors, cavities, and abnormalities.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 2 datasets cited

[20422] doi:10.1162/imag_a_00462 [paper, repository]

Dedifferentiation of caudate functional organization is linked to reduced D1 dopamine receptor availability and poorer memory function in aging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF t9nkm (no license)

Status: code verified, 4 files readable

[20423] doi:10.1177/23982128251314577 [paper, repository]

No effect of apolipoprotein E polymorphism on MRI brain activity during movie watching.

Journal: Brain and neuroscience advances

Authors' code: OSF kg84u (no license)

Status: code verified, 1 file readable, 1 match

[20424] doi:10.1186/s12974-025-03362-1 [paper, data]

Microglial C/EBPβ-Fcgr1 regulatory axis blocking inhibits microglial pyroptosis and improves neurological recovery.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[20425] doi:10.1186/s13195-024-01612-7 [paper, data]

Glymphatic system clearance and Alzheimer's disease risk: a CSF proteome-wide study.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[20426] doi:10.1186/s13293-025-00688-6 [paper, data]

The impact of chronic intermittent hypoxia on enzymatic activity in memory-associated brain regions of male and female rats.

Journal: Biology of sex differences

Status: data only, 3 datasets cited

[20427] doi:10.1186/s40359-025-02357-0 [paper, repository]

Small pieces make the big picture: the etiology of the relationship between executive functions and personality traits.

Journal: BMC psychology

Authors' code: OSF ecgxs (no license), Zenodo 3514218 (other-open), petarcolovic/r_cqbg (no license)

Status: code verified, 16 files readable, 2 matches

[20428] doi:10.1371/journal.pone.0318422 [paper]

Folic acid supplementation during preconception period in sub-Saharan African countries: A systematic review and meta-analysis.

Journal: PloS one

Status: code on request

[20429] doi:10.3390/e27020142 [paper, data]

Research on Depression Recognition Model and Its Temporal Characteristics Based on Multiscale Entropy of EEG Signals.

Journal: Entropy (Basel, Switzerland)

Status: data only, 1 dataset cited

[20430] doi:10.3390/ijms26031239 [paper, repository]

Red Blood Cell-Related Phenotype-Genotype Correlations in Chronic and Acute Critical Illnesses (Traumatic Brain Injury Cohort and COVID-19 Cohort).

Journal: International journal of molecular sciences

Authors' code: annovar.openbioinformatics.org/en/latest (no license)

Status: code verified

[20431] doi:10.3390/ijms26031249 [paper]

Light-Sheet Fluorescence Imaging Reveals Three-Dimensional Amyloid Burden Reduction Following Five Weeks of Swimming Exercise in Alzheimer's Mouse.

Journal: International journal of molecular sciences

Status: code on request

[20432] doi:10.3390/ijms26031251 [paper, data]

The Long-Term Effects of Chronic Unpredictable Mild Stress Experienced During Adolescence Could Vary Depending on Biological Sex.

Journal: International journal of molecular sciences

Status: data only, 4 datasets cited

[20433] doi:10.3390/jpm15020058 [paper, data]

Towards Trustworthy AI in Healthcare: Epistemic Uncertainty Estimation for Clinical Decision Support.

Journal: Journal of personalized medicine

Status: code on request, 2 datasets cited

[20434] doi:10.7554/elife.95125 [paper, repository]

Predicting individual traits from models of brain dynamics accurately and reliably using the Fisher kernel.

Journal: eLife

Authors' code: ahrends/FisherKernel (MIT), vidaurre/glhmm (GPL-3.0), vidaurre/netspredict (MIT), nitrc.org/projects/bioimagesuite (no license)

Status: code verified, 136 files readable, 19 matches

Thursday, 30 January 2025 (36 papers)

[20435] doi:10.1002/advs.202412556 [paper, repository]

Microglia-Derived Interleukin-6 Triggers Astrocyte Apoptosis in the Hippocampus and Mediates Depression-Like Behavior.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[20436] doi:10.1002/ana.27185 [paper, repository]

Spiking Patterns in the Globus Pallidus Highlight Convergent Neural Dynamics across Diverse Genetic Dystonia Syndromes.

Journal: Annals of neurology

Authors' code: ahmetofficial/Spike-Feature-Generator (no license), ahmetofficial/Genetic-DYT-Pallidal-Neural-Pattern-Analysis (no license)

Status: code verified, 148 files readable, 15 matches

[20437] doi:10.1007/s00062-025-01498-4 [paper, repository]

Predictors and Implications of Myocardial Injury in Intracerebral Hemorrhage.

Journal: Clinical neuroradiology

Authors' code: jqmcginnis/ich_segmentation (MIT)

Status: code verified, 24 files readable

[20438] doi:10.1007/s10032-025-00513-1 [paper, repository]

Redacted text detection using neural image segmentation methods.

Journal: International journal on document analysis and recognition (Online)

Authors' code: RubenvanHeusden/NeuralRedactedTextDetection (no license)

Status: code verified, 14 files readable, 6 matches

[20439] doi:10.1016/j.bpsgos.2025.100455 [paper, repository]

Diminished Social Memory and Hippocampal Correlates of Social Interactions in Chronic Social Defeat Stress Susceptibility.

Journal: Biological psychiatry global open science

Authors' code: tpwonglab/social-ensemble-analysis (CC-BY-4.0)

Status: code verified, 6 files readable

[20440] doi:10.1016/j.celrep.2025.115249 [paper]

A central role for acetylcholine in entorhinal cortex function and dysfunction with age in humans and mice.

Journal: Cell reports

Status: code on request

[20441] doi:10.1016/j.clinph.2025.01.011 [paper]

Fast ripple band high-frequency activity associated with thalamic sleep spindles in pediatric epilepsy.

Journal: Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology

Status: code on request

[20442] doi:10.1016/j.xcrm.2025.101931 [paper, repository]

CAR T cells, CAR NK cells, and CAR macrophages exhibit distinct traits in glioma models but are similarly enhanced when combined with cytokines.

Journal: Cell reports. Medicine

Authors' code: Zenodo 14230743 (CC-BY-4.0)

Status: code verified, 5 files readable, 2 matches

[20443] doi:10.1016/j.xpro.2025.103604 [paper, repository]

Protocol to image, segment, and quantify cortical contractions in maturing mouse oocytes.

Journal: STAR protocols

Authors' code: gletort/imagejfiles (no license)

Status: code verified, 19 files readable

[20444] doi:10.1016/j.xpro.2025.103609 [paper]

Protocol for assessing myelination by human iPSC-derived oligodendrocytes in Shiverer mouse ex vivo brain slice cultures.

Journal: STAR protocols

Status: code on request

[20445] doi:10.1038/s41380-025-02901-9 [paper, data]

Synaptic vulnerability to amyloid-β and tau pathologies differentially disrupts emotional and memory neural circuits.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[20446] doi:10.1038/s41398-025-03256-z [paper]

Double-blind, randomized, placebo-controlled pilot clinical trial with gamma-band transcranial alternating current stimulation for the treatment of schizophrenia refractory auditory hallucinations.

Journal: Translational psychiatry

Status: code on request

[20447] doi:10.1038/s41467-025-56362-3 [paper, repository]

Stress landscape of folding brain serves as a map for axonal pathfinding.

Journal: Nature communications

Authors' code: Zenodo 14553393 (GPL-3.0), mechanicsofsoftbiomaterialslab/axonal-pathfinding (GPL-3.0)

Status: code verified, 4 files readable

[20448] doi:10.1038/s41467-025-56484-8 [paper, repository]

Oligodendrocyte precursor cells facilitate neuronal lysosome release.

Journal: Nature communications

Authors' code: Lipao-Fang/-Oligodendrocyte-precursor-cells-facilitate-neuronal-lysosome-release (no license), Zenodo 14610591 (CC-BY-4.0)

Status: code verified, 4 files readable

[20449] doi:10.1038/s41591-024-03426-4 [paper, repository]

Plasma proteomic evidence for increased β-amyloid pathology after SARS-CoV-2 infection.

Journal: Nature medicine

Authors' code: tjiagoM/adni_phenotypes (other), eduff/BIACOB (no license)

Status: code verified, 30 files readable, 1 match

[20450] doi:10.1038/s41597-025-04510-1 [paper, repository]

A single-cell RNA sequencing dataset of peripheral blood cells in long COVID patients on herbal therapy.

Journal: Scientific data

Authors' code: bdbiosciences.com/content/dam (no license), kprazano/longCOVID (MIT)

Status: code verified, 4 files readable, 5 matches

[20451] doi:10.1038/s41598-025-86891-2 [paper, data]

Genes related to neural tube defects and glioblastoma.

Journal: Scientific reports

Status: data only, 1 dataset cited

[20452] doi:10.1038/s42005-025-01955-z [paper]

Spectroscopy of two-dimensional interacting lattice electrons using symmetry-aware neural backflow transformations.

Journal: Communications physics

Status: code on request

[20453] doi:10.1038/s44271-025-00199-5 [paper, repository]

Error-driven upregulation of memory representations.

Journal: Communications psychology

Authors' code: OSF yr6n2 (no license)

Status: code verified, 1 file readable, 11 matches

[20454] doi:10.1073/pnas.2416214122 [paper, repository]

Impaired spatial coding of the hippocampus in a dentate gyrus hypoplasia mouse model.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: KordingLab/Neural_Decoding (BSD-3-Clause), XiaojingChenLab/DGless (no license)

Status: code verified, 32 files readable

[20455] doi:10.1159/000542763 [paper, data]

Small Cell Lung Cancer with Dual Paraneoplastic Syndromes: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[20456] doi:10.1162/imag_a_00463 [paper]

Intra-voxel angular dispersion of fibers in corpus callosum decreases with healthy aging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[20457] doi:10.1162/imag_a_00464 [paper, data]

Putative mapping of α-subunits in the human brain: A PET study of GABA <sub>A</sub> receptor binding.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request, 1 dataset cited

[20458] doi:10.1186/s12984-025-01545-8 [paper, data]

Transcutaneous spinal cord stimulation combined with robotic-assisted body weight-supported treadmill training enhances motor score and gait recovery in incomplete spinal cord injury: a double-blind randomized controlled clinical trial.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

[20459] doi:10.1186/s12984-025-01561-8 [paper, repository]

Motor modules are largely unaffected by pathological walking biomechanics: a simulation study.

Journal: Journal of neuroengineering and rehabilitation

Authors' code: Mohammad-Rahimi/different_walking_behaviors_directCollocation_NMF (no license)

Status: code verified, 23 files readable, 12 matches

[20460] doi:10.1186/s40359-025-02376-x [paper, data]

The effects of aerobic exercise on goal-directed attention and inhibitory control in individuals with high trait anxiety: an EEG study.

Journal: BMC psychology

Status: data only, 1 dataset cited

[20461] doi:10.1371/journal.pbio.3002730 [paper, data]

Food hardness preference reveals multisensory contributions of fly larval gustatory organs in behaviour and physiology.

Journal: PLoS biology

Status: data only, 2 datasets cited

[20462] doi:10.1371/journal.pone.0315394 [paper, repository]

Distinguishing classes of neuroactive drugs based on computational physicochemical properties and experimental phenotypic profiling in planarians.

Journal: PloS one

Authors' code: openbabel/openbabel (GPL-2.0)

Status: code verified, 698 files readable, 2 matches

[20463] doi:10.1371/journal.pone.0318593 [paper, data]

Multi-session tDCS over the posterior parietal cortex and associative memory.

Journal: PloS one

Status: data only, 1 dataset cited

[20464] doi:10.1523/eneuro.0417-24.2024 [paper, repository]

Repetitive Grooming Behavior Following Aversive Stimulus Coincides with a Decrease in Anterior Hypothalamic Area Activity.

Journal: eNeuro

Authors' code: OSF u5btn (no license)

Status: code verified, 6 files readable

[20465] doi:10.21203/rs.3.rs-5655503/v1 [paper, repository]

The mode of breathing affects awareness-related brain potentials: Oral breathing shapes awareness-related brain potentials differently than nasal breathing

Journal: Research Square (preprint)

Authors' code: Zenodo 14446172 (MIT), vivile42/oral_24 (MIT)

Status: code verified, 61 files readable

[20466] doi:10.3389/fnhum.2025.1460584 [paper, repository]

Electrical brain activations in preadolescents during a probabilistic reward-learning task reflect cognitive processes and behavior strategies.

Journal: Frontiers in human neuroscience

Authors' code: gaffreylab (no license)

Status: code verified

[20467] doi:10.3389/fnmol.2025.1542938 [paper, data]

Impaired peroxisomal beta-oxidation in microglia triggers oxidative stress and impacts neurons and oligodendrocytes.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[20468] doi:10.3389/fonc.2025.1497195 [paper, repository]

Early characterization and prediction of glioblastoma and brain metastasis treatment efficacy using medical imaging-based radiomics and artificial intelligence algorithms.

Journal: Frontiers in oncology

Authors' code: NeuroAI-HD/HD-GLIO-XNAT (Apache-2.0)

Status: code verified, 12 files readable

[20469] doi:10.7554/elife.96144 [paper, data]

Volume electron microscopy reveals unique laminar synaptic characteristics in the human entorhinal cortex.

Journal: eLife

Status: data only, 3 datasets cited

[20470] doi:10.7554/elife.98358 [paper, repository]

Synaptic enrichment and dynamic regulation of the two opposing dopamine receptors within the same neurons.

Journal: eLife

Authors' code: doi:10.12751/g-node.i3xmim (no license)

Status: code verified

Wednesday, 29 January 2025 (44 papers)

[20471] doi:10.1002/alz.14424 [paper, repository]

Sleep spindles and slow oscillations predict cognition and biomarkers of neurodegeneration in mild to moderate Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: wonambi-python/wonambi (BSD-3-Clause)

Status: code verified, 131 files readable, 3 matches

[20472] doi:10.1002/jcv2.12298 [paper, repository]

Validation of CBCL depression scores of adolescents in three independent datasets.

Journal: JCPP advances

Authors' code: transatlantic-comppsych/CBCL_Aff_Validation (CC0-1.0)

Status: code verified, 13 files readable, 2 matches

[20473] doi:10.1016/j.clinsp.2025.100581 [paper, data]

circLOC375190 promotes autophagy through modulation of the mTORC1/TFEB axis in acute ischemic stroke-induced neurological injury.

Journal: Clinics (Sao Paulo, Brazil)

Status: data only, 1 dataset cited

[20474] doi:10.1016/j.isci.2025.111785 [paper, repository]

Tau and MAP6 establish labile and stable domains on microtubules.

Journal: iScience

Authors' code: Zenodo 14596990 (MIT), cwu-computational-biophysics/tau-mts (MIT)

Status: code verified, 44 files readable

[20475] doi:10.1016/j.media.2025.103462 [paper, repository]

DSAM: A deep learning framework for analyzing temporal and spatial dynamics in brain networks.

Journal: Medical image analysis

Authors' code: bishalth01/DSAM (no license)

Status: code verified, 67 files readable, 8 matches

[20476] doi:10.1016/j.taap.2025.117246 [paper, data]

Zebrafish Cyp1b1 knockout alters eye and brain metabolomic profiles, affecting ocular and neurobehavioral function.

Journal: Toxicology and applied pharmacology

Status: data only, 1 dataset cited

[20477] doi:10.1038/s41380-025-02900-w [paper, repository]

Neural signatures of risk-taking adaptions across health, bipolar disorder, and lithium treatment.

Journal: Molecular psychiatry

Authors' code: OSF ychbf (no license)

Status: code verified, 1 file readable

[20478] doi:10.1038/s41598-025-86157-x [paper, data]

Exploring imitation of within hand prehensile object manipulation using fMRI and graph theory analysis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[20479] doi:10.1038/s42003-025-07585-z [paper, repository]

APOE4 and sedentary lifestyle synergistically impair neurovascular function in the visual cortex of awake mice.

Journal: Communications biology

Authors' code: BrainEnergyLab/VascularImagingAnalysis (no license), Zenodo 14755861 (CC-BY-4.0)

Status: code verified, 12 files readable, 1 match

[20480] doi:10.1038/s43018-024-00904-z [paper, repository]

Spatially resolved transcriptomics and graph-based deep learning improve accuracy of routine CNS tumor diagnostics.

Journal: Nature cancer

Authors' code: theMILOlab/SPATA2 (gnu), heilandd/NePSTA (no license), themilolab.github.io/spata2 (no license), Zenodo 22040374 (MIT)

Status: code verified, 104 files readable, 18 matches

[20481] doi:10.1073/pnas.2422533122 [paper, repository]

Subunit-specific conductance of single homomeric and heteromeric HCN pacemaker channels at femtosiemens resolution.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 14278606 (CC-BY-4.0), OSF q4e5d (no license)

Status: code verified

[20482] doi:10.1091/mbc.e24-11-0512 [paper, repository]

Adaptive protein synthesis in genetic models of copper deficiency and childhood neurodegeneration.

Journal: Molecular biology of the cell

Authors' code: CoxLabGSU/Drosophila_Sensory_Neuron_Quantification (GPL-3.0)

Status: code verified, 2 files readable

[20483] doi:10.1093/braincomms/fcaf032 [paper, repository]

Exploratory analysis of biological age measures in a remyelination clinical trial.

Journal: Brain communications

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable, 2 matches

[20484] doi:10.1097/wnr.0000000000002130 [paper, data]

Functional imaging of time on task and habituation in passive exposure to faces with emotional expression.

Journal: Neuroreport

Status: data only, 1 dataset cited

[20485] doi:10.1098/rsif.2024.0688 [paper, repository]

Robust undulatory locomotion through neuromechanical adjustments in a dissipative medium.

Journal: Journal of the Royal Society, Interface

Authors' code: doi:10.6084/m9.figshare.c.7639319 (no license)

Status: code found, still to be checked

[20486] doi:10.1098/rsob.240279 [paper, repository]

Targeting of retrovirus-derived <i>Rtl8a</i>/<i>8b</i> causes late-onset obesity, reduced social response and increased apathy-like behaviour.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.7637349 (no license)

Status: code found, still to be checked

[20487] doi:10.1098/rspb.2024.2540 [paper, data]

Volitional spatial attention is lateralized in crows.

Journal: Proceedings. Biological sciences

Status: data only, 1 dataset cited

[20488] doi:10.1162/imag_a_00437 [paper, repository]

Evidence for a compensatory relationship between left- and right-lateralized brain networks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ThomasYeoLab/CBIG (MIT), Nielsen-Brain-and-Behavior-Lab/NSAR2023 (MIT)

Status: code verified, 2,124 files readable, 14 matches

[20489] doi:10.1162/imag_a_00450 [paper]

Characterizing the temporal dynamics and maturation of brain activity during sleep: An EEG microstate study in preterm and full-term infants.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[20490] doi:10.1162/imag_a_00458 [paper, repository]

When no answer is better than a wrong answer: A causal perspective on batch effects.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: neurodata/causal_batch (GPL-3.0), hub.docker.com/r/neurodata (no license), Zenodo 14680849 (GPL-3.0), Zenodo 10576894 (GPL-3.0)

Status: code verified, 36 files readable, 6 matches

[20491] doi:10.1186/s12864-025-11236-2 [paper, data]

Sex reversal induced by 17β-estradiol may be achieved by regulating the neuroendocrine system of the Pacific white shrimp Penaeus vannamei.

Journal: BMC genomics

Status: data only, 1 dataset cited

[20492] doi:10.1186/s13024-025-00798-0 [paper, data]

Cell-specific transcriptional signatures of vascular cells in Alzheimer's disease: perspectives, pathways, and therapeutic directions.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[20493] doi:10.1186/s40478-024-01920-x [paper]

Understanding retinal tau pathology through functional 2D and 3D iPSC-derived in vitro retinal models.

Journal: Acta neuropathologica communications

Status: code on request

[20494] doi:10.1212/nxi.0000000000200360 [paper, repository]

Cognitive Deficits in Anti-LGI1 Encephalitis Are Linked to Immunotherapy-Resistant White Matter Network Changes.

Journal: Neurology(R) neuroimmunology & neuroinflammation

Authors' code: OSF uf29k (no license)

Status: code verified, 6 files readable, 6 matches

[20495] doi:10.1371/journal.pcbi.1012754 [paper, repository]

The calcitron: A simple neuron model that implements many learning rules via the calcium control hypothesis.

Journal: PLoS computational biology

Authors' code: tmoldwin/Calcitron (no license)

Status: code verified, 36 files readable, 2 matches

[20496] doi:10.1371/journal.pcbi.1012776 [paper, repository]

The role of oscillations in grid cells' toroidal topology.

Journal: PLoS computational biology

Authors' code: gdisarra/Oscillations_toroidal_topology (no license), erikher/GridCellTorus (GPL-3.0)

Status: code verified, 23 files readable, 1 match

[20497] doi:10.1523/eneuro.0166-24.2025 [paper, repository]

Failed Stopping Transiently Suppresses the Electromyogram in Task-Irrelevant Muscles.

Journal: eNeuro

Authors' code: OSF gkeb3 (no license)

Status: code verified, 9 files readable, 2 matches

[20498] doi:10.1523/jneurosci.1404-24.2024 [paper, repository]

Diverse Frontoparietal Connectivity Supports Semantic Prediction and Integration in Sentence Comprehension.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF 3hjwm (no license)

Status: code verified, 1 file readable

[20499] doi:10.1523/jneurosci.1456-24.2024 [paper, repository]

Acute Communication Between Microglia and Nonparenchymal Immune Cells in the Anti-Aβ Antibody-Injected Cortex.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: kefoley06/Acute_responses_to_anti-AB_antibody (no license)

Status: code verified, 4 files readable, 3 matches

[20500] doi:10.1523/jneurosci.1568-24.2024 [paper, repository]

GlyT2-Positive Interneurons Regulate Timing and Variability of Information Transfer in a Cerebellar-Behavioral Loop.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Zenodo 13327395 (CC-BY-4.0), ensorpalacios/npx-analysis (CC-BY-4.0)

Status: code verified, 36 files readable, 14 matches

[20501] doi:10.3389/fgene.2024.1504114 [paper, data]

Based on bioinformatics, SESN2 negatively regulates ferroptosis induced by ischemia reperfusion via the System Xc-/GPX4 pathway.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[20502] doi:10.3389/fmicb.2025.1452423 [paper]

Integrative analysis of intestinal flora and untargeted metabolomics in attention-deficit/hyperactivity disorder.

Journal: Frontiers in microbiology

Status: data only

[20503] doi:10.3389/fncom.2025.1513059 [paper, data]

MUNet: a novel framework for accurate brain tumor segmentation combining UNet and mamba networks.

Journal: Frontiers in computational neuroscience

Status: data only, 3 datasets cited

[20504] doi:10.3389/fnins.2024.1516868 [paper, data]

Fourier or Wavelet bases as counterpart self-attention in spikformer for efficient visual classification.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[20505] doi:10.3389/fnins.2025.1512724 [paper]

Integrated information theory reveals the potential role of the posterior parietal cortex in sustaining conditioning responses in classical conditioning tasks.

Journal: Frontiers in neuroscience

Status: code on request

[20506] doi:10.3390/biom15020193 [paper, data]

Transcriptional Responses of In Vitro Blood-Brain Barrier Models to Shear Stress.

Journal: Biomolecules

Status: data only, 1 dataset cited

[20507] doi:10.3390/diagnostics15030316 [paper, repository]

Explainable AI for Bipolar Disorder Diagnosis Using Hjorth Parameters.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: weizhenhit/All-In-One-EEG-Feature-Extraction-Toolbox (MIT), Mehrnuz/Hjorth-EEG-Classification (no license)

Status: code verified, 65 files readable, 7 matches

[20508] doi:10.3390/tomography11020014 [paper, repository]

Graph Neural Network Learning on the Pediatric Structural Connectome.

Journal: Tomography (Ann Arbor, Mich.)

Authors' code: SrinivasanAnand/GNN_structural_connectivity (no license)

Status: code verified, 14 files readable, 6 matches

[20509] doi:10.4103/nrr.nrr-d-24-01067 [paper, data]

NeuroD1-based in situ neural regeneration for the treatment of radiation-induced brain injury.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[20510] doi:10.4103/nrr.nrr-d-24-01092 [paper]

Changes in border-associated macrophages after stroke: Single-cell sequencing analysis.

Journal: Neural regeneration research

Status: data only

[20511] doi:10.7554/elife.101142 [paper, repository]

The multifaceted role of the inferior colliculus in sensory prediction, reward processing, and decision-making.

Journal: eLife

Authors' code: Zenodo 14539959 (CC-BY-4.0), Zenodo 14539958 (CC-BY-4.0)

Status: code verified, 216 files readable

[20512] doi:10.7554/elife.102977 [paper, data]

eIF3 engages with 3'-UTR termini of highly translated mRNAs.

Journal: eLife

Status: data only, 1 dataset cited

[20513] doi:10.7554/elife.94168 [paper, repository]

Driver lines for studying associative learning in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: eLife

Authors' code: Zenodo 6366082 (GPL-2.0)

Status: code verified

[20514] doi:10.7554/elife.98514 [paper, repository]

Nutritional state-dependent modulation of insulin-producing cells in <i>Drosophila</i>.

Journal: eLife

Authors' code: kristinbranson.github.io/flytracker (no license)

Status: code verified

Tuesday, 28 January 2025 (28 papers)

[20515] doi:10.1002/mds.30109 [paper, repository]

Brain Age as a New Measure of Disease Stratification in Huntington's Disease.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable

[20516] doi:10.1007/s10278-025-01399-5 [paper, repository]

MHNet: Multi-view High-Order Network for Diagnosing Neurodevelopmental Disorders Using Resting-State fMRI.

Journal: Journal of imaging informatics in medicine

Authors' code: xxlya/BrainGNN_Pytorch (no license), XiJiangLabUESTC/Node-Edge-Graph-Attention-Networks (MIT), GuangqiWen/MVS-GCN (no license), haojiang1/hi-GCN (no license), Wayfear/BrainNetworkTransformer (MIT), MianxinLiu/MAHGCN-code (no license), ubc-tea/Com-BrainTF (no license)

Status: code verified, 129 files readable, 1 match

[20517] doi:10.1007/s11357-025-01515-x [paper]

The negative relationship between brain-age gap and psychological resilience defines the age-related neurocognitive status in older people.

Journal: GeroScience

Status: code on request

[20518] doi:10.1016/j.nbd.2025.106818 [paper, data]

Estrogen-related receptor gamma is a regulator of mitochondrial, autophagy, and immediate-early gene programs in spiny projection neurons: Relevance for transcriptional changes in Huntington disease.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[20519] doi:10.1038/s41398-025-03238-1 [paper, repository]

Symptom-based depression subtypes: brain dynamic specificity and its association with gene expression profiles.

Journal: Translational psychiatry

Authors' code: QunjunLIANG/subtype_MDD (MIT)

Status: code verified, 26 files readable, 6 matches

[20520] doi:10.1038/s41398-025-03245-2 [paper, repository]

Exploring when to exploit: the cognitive underpinnings of foraging-type decisions in relation to psychopathy.

Journal: Translational psychiatry

Authors' code: OSF ztkcv (no license)

Status: code verified, 5 files readable, 3 matches

[20521] doi:10.1038/s41467-025-56185-2 [paper, repository]

Neural circuits underlying context-dependent competition between defensive actions in Drosophila larvae.

Journal: Nature communications

Authors' code: Zenodo 14192556 (CC-BY-4.0), tihana-jovanic/classifications_chrimson_tnt (no license)

Status: code verified, 12 files readable

[20522] doi:10.1038/s41467-025-56289-9 [paper, repository]

Sub-cellular population imaging tools reveal stable apical dendrites in hippocampal area CA3.

Journal: Nature communications

Authors' code: Zenodo 14207307 (CC-BY-4.0), basulab-nyu/d-NMF (GPL-3.0)

Status: code verified, 34 files readable, 7 matches

[20523] doi:10.1038/s41467-025-56400-0 [paper, repository]

Polygenic burden of short tandem repeat expansions promotes risk for Alzheimer's disease.

Journal: Nature communications

Authors' code: mhguo1/AD_STR (MIT), Zenodo 13917273 (CC-BY-4.0)

Status: code verified, 34 files readable, 14 matches

[20524] doi:10.1038/s41467-025-56450-4 [paper, repository]

Anisotropic hydrogel microelectrodes for intraspinal neural recordings in vivo.

Journal: Nature communications

Authors' code: neurobiologylab (no license)

Status: code verified

[20525] doi:10.1038/s41593-024-01868-0 [paper, repository]

The architecture of the human default mode network explored through cytoarchitecture, wiring and signal flow.

Journal: Nature neuroscience

Authors' code: caseypaquola/BigBrainWarp (other), caseypaquola/DMN (MIT), Zenodo 14034720 (CC-BY-4.0), Zenodo 1412054 (MIT), kwagstyl/surface_tools (MIT)

Status: code verified, 97 files readable, 13 matches

[20526] doi:10.1038/s41598-025-86752-y [paper, repository]

Dilated SE-DenseNet for brain tumor MRI classification.

Journal: Scientific reports

Authors' code: YuannongMao01/Improved-DenseNet-for-Brain-tumor-MRI (CC-BY-4.0)

Status: code verified, 7 files readable, 4 matches

[20527] doi:10.1038/s41598-025-86895-y [paper, repository]

Beta oscillations predict the envelope sharpness in a rhythmic beat sequence.

Journal: Scientific reports

Authors' code: bastibe/Violinplot-Matlab (BSD-3-Clause), anne-urai/tools (BSD-2-Clause), OSF rb3ap (no license)

Status: code verified, 341 files readable, 1 match

[20528] doi:10.1038/s41598-025-87377-x [paper, repository]

Investigating time-independent and time-dependent diffusion phenomena using steady-state diffusion MRI.

Journal: Scientific reports

Authors' code: BenjaminTendler/SteadyStateDiffusionMicrostructure (Apache-2.0), BenjaminTendler/SteadyStateDiffusionMicrostructureture (no license)

Status: code verified, 68 files readable, 8 matches

[20529] doi:10.1038/s42003-024-07282-3 [paper, repository]

Recurrent neural networks with transient trajectory explain working memory encoding mechanisms.

Journal: Communications biology

Authors' code: jiashuncheng/Transient (no license)

Status: code verified, 28 files readable, 5 matches

[20530] doi:10.1055/a-2505-5657 [paper, data]

Cortical Neurotransmitters Measured by Magnetic Resonance Spectroscopy Change Following Traumatic Brachial Plexus Injury.

Journal: Journal of brachial plexus and peripheral nerve injury

Status: data only, 1 dataset cited

[20531] doi:10.1073/pnas.2412029122 [paper, repository]

Endogenous LRRK2 and PINK1 function in a convergent neuroprotective ciliogenesis pathway in the brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 145351332024 (no license), Zenodo 11518850 (CC-BY-4.0), Zenodo 11519152 (CC-BY-4.0), Zenodo 14014456 (CC-BY-4.0)

Status: code verified

[20532] doi:10.1088/1741-2552/adab21 [paper, data]

Transformer-based neural speech decoding from surface and depth electrode signals.

Journal: Journal of neural engineering

Status: data only, 1 dataset cited

[20533] doi:10.1093/nsr/nwaf030 [paper, repository]

DSCT: a novel deep-learning framework for rapid and accurate spatial transcriptomic cell typing.

Journal: National science review

Authors' code: coffeei1i/DSCT (GPL-2.0), codeocean:6490820 (no license)

Status: code verified, 8 files readable, 4 matches

[20534] doi:10.1093/pnasnexus/pgae542 [paper, data]

Pancreatic β cell-secreted factor FGF23 attenuates Alzheimer's disease-related amyloid β-induced neuronal death.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[20535] doi:10.1097/rlu.0000000000005685 [paper, repository]

Deep Learning-Powered CT-Less Multitracer Organ Segmentation From PET Images: A Solution for Unreliable CT Segmentation in PET/CT Imaging.

Journal: Clinical nuclear medicine

Authors' code: YazdanSalimi/Organ-Segmentation (MIT)

Status: code verified, 7 files readable, 3 matches

[20536] doi:10.1177/20417314241295928 [paper, repository]

Insulin resistance compromises midbrain organoid neuronal activity and metabolic efficiency predisposing to Parkinson's disease pathology.

Journal: Journal of tissue engineering

Authors' code: uniluxembourg/lcsb/developmental-and-cellular-biology/zagare_2023_2 (Apache-2.0)

Status: code verified, 16 files readable, 5 matches

[20537] doi:10.1186/s12859-025-06042-2 [paper, repository]

Marigold: a machine learning-based web app for zebrafish pose tracking.

Journal: BMC bioinformatics

Authors' code: downeslab/marigold (GPL-3.0)

Status: code verified, 26 files readable, 5 matches

[20538] doi:10.1186/s12974-025-03339-0 [paper, data]

NLRX1 limits inflammatory neurodegeneration in the anterior visual pathway.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[20539] doi:10.1186/s12974-025-03354-1 [paper, data]

Genotype-driven sensitivity of mice to tick-borne encephalitis virus correlates with differential host responses in peripheral macrophages and brain.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[20540] doi:10.1371/journal.pbio.3002997 [paper, data]

The neurohormone tyramine stimulates the secretion of an insulin-like peptide from the Caenorhabditis elegans intestine to modulate the systemic stress response.

Journal: PLoS biology

Status: data only, 1 dataset cited

[20541] doi:10.1523/eneuro.0317-24.2024 [paper, data]

Cross-Validating the Electrophysiological Markers of Early Face Categorization.

Journal: eNeuro

Status: data only, 1 dataset cited

[20542] doi:10.2196/59663 [paper, data]

Long-Term Impact of Using Mobile Phones and Playing Computer Games on the Brain Structure and the Risk of Neurodegenerative Diseases: Large Population-Based Study.

Journal: Journal of medical Internet research

Status: code on request, 1 dataset cited

Monday, 27 January 2025 (28 papers)

[20543] doi:10.1002/alz.14492 [paper, repository]

A multi-cohort study of longitudinal and cross-sectional Alzheimer's disease biomarkers in cognitively unimpaired older adults.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: pyushkevich/greedy (Apache-2.0), pyushkevich/cmrep (GPL-3.0)

Status: code verified, 256 files readable, 1 match

[20544] doi:10.1002/cpt.3552 [paper]

Investigation of Genomic and Transcriptomic Risk Factors of Clopidogrel Response in African Americans.

Journal: Clinical pharmacology and therapeutics

Status: data only

[20545] doi:10.1002/mrm.30406 [paper, repository]

Nexus: A versatile console for advanced low-field MRI.

Journal: Magnetic resonance in medicine

Authors' code: schote/nexus-console (GPL-3.0)

Status: code verified, 60 files readable, 22 matches

[20546] doi:10.1016/j.isci.2025.111904 [paper, repository]

A design principle for neuronal firing with up-down oscillation through Na⁺ dynamics.

Journal: iScience

Authors' code: DSPsleeporg/nanmodel (MIT)

Status: code verified, 802 files readable, 11 matches

[20547] doi:10.1016/j.isci.2025.111909 [paper, repository]

Attenuation processes in positive social emotion upregulation: Disentangling functional role of ventrolateral prefrontal cortex.

Journal: iScience

Authors' code: OSF 8tvec (no license)

Status: code verified

[20548] doi:10.1016/j.nbd.2025.106813 [paper, data]

Alzheimer's disease risk ABCA7 p.A696S variant disturbs the microglial response to amyloid pathology in mice.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[20549] doi:10.1016/j.nicl.2025.103744 [paper, repository]

Association of valproate use and hippocampal atrophy in idiopathic generalized epilepsy.

Journal: NeuroImage. Clinical

Authors' code: hippunfold.readthedocs.io (no license)

Status: dead link

[20550] doi:10.1016/j.toxrep.2025.101931 [paper, data]

Fumonisin B1 neurotoxicity: Preclinical evidence, biochemical mechanisms and therapeutic strategies.

Journal: Toxicology reports

Status: data only, 2 datasets cited

[20551] doi:10.1038/s41467-025-56292-0 [paper, repository]

The transcriptional response of cortical neurons to concussion reveals divergent fates after injury.

Journal: Nature communications

Authors' code: malkasla/Alkaslasi-et-al._2024 (no license)

Status: code verified, 1 file readable, 2 matches

[20552] doi:10.1038/s41592-024-02583-1 [paper, repository]

A deep learning pipeline for three-dimensional brain-wide mapping of local neuronal ensembles in teravoxel light-sheet microscopy.

Journal: Nature methods

Authors' code: miracl.readthedocs.io (no license), AICONSlab/roodmri (GPL-3.0)

Status: code verified, 14 files readable

[20553] doi:10.1038/s41597-024-04136-9 [paper, repository]

NIRS-BIDS: Brain Imaging Data Structure Extended to Near-Infrared Spectroscopy.

Journal: Scientific data

Authors' code: Zenodo 5529797 (other-open), Zenodo 6575155 (other-open)

Status: code verified, 2 files readable

[20554] doi:10.1038/s41684-024-01505-0 [paper, repository]

Behavioral and neurophysiological effects of electrical stunning on zebrafish larvae.

Journal: Lab animal

Authors' code: doi:10.12751/g-node.y5pjnv (no license)

Status: code verified

[20555] doi:10.1039/d4an01323a [paper, repository]

Detection and quantification of ergothioneine in human serum using surface enhanced Raman scattering (SERS).

Journal: The Analyst

Authors' code: cbeleites/hyperSpec (GPL-3.0)

Status: code verified, 160 files readable

[20556] doi:10.1093/noajnl/vdaf010 [paper, data]

Lack of ST2 aggravates glioma invasiveness, vascular abnormality, and immune suppression.

Journal: Neuro-oncology advances

Status: data only, 1 dataset cited

[20557] doi:10.1101/2025.01.24.25321092 [paper, repository]

Digital health app data reveals an effect of ovarian hormones on long COVID and myalgic encephalomyelitis symptoms

Journal: medRxiv (preprint)

Authors' code: AbiGoodship/effect_of_ovarian_hormones_on_long_COVID_and_ME_symptoms (MIT)

Status: code verified, 13 files readable, 12 matches

[20558] doi:10.1117/1.nph.12.1.015006 [paper]

Programmable scanning diffuse speckle contrast imaging of cerebral blood flow.

Journal: Neurophotonics

Status: code on request

[20559] doi:10.1159/000543774 [paper, data]

Brain Volume Metric Analysis Is Correlated with Aging Changes and Sex Differences in Thai Older Adults.

Journal: Dementia and geriatric cognitive disorders extra

Status: data only, 1 dataset cited

[20560] doi:10.1177/20552076241313407 [paper, data]

eNSMBL-PASD: Spearheading early autism spectrum disorder detection through advanced genomic computational frameworks utilizing ensemble learning models.

Journal: Digital health

Status: data only, 1 dataset cited

[20561] doi:10.1186/s13195-025-01673-2 [paper, data]

The ABC transporter A7 modulates neuroinflammation via NLRP3 inflammasome in Alzheimer's disease mice.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[20562] doi:10.1371/journal.pbio.3003004 [paper, data]

Trithorax regulates long-term memory in Drosophila through epigenetic maintenance of mushroom body metabolic state and translation capacity.

Journal: PLoS biology

Status: data only, 1 dataset cited

[20563] doi:10.1371/journal.pbio.3003008 [paper, repository]

Diverse neuronal activity patterns contribute to the control of distraction in the prefrontal and parietal cortex.

Journal: PLoS biology

Authors' code: Zenodo 14577123 (CC-BY-4.0)

Status: code verified, 9 files readable

[20564] doi:10.1371/journal.pcbi.1012751 [paper, repository]

Human-like face pareidolia emerges in deep neural networks optimized for face and object recognition.

Journal: PLoS computational biology

Authors' code: martinezjulio/sdnn (MIT), rsagroup/rsatoolbox (MIT)

Status: code verified, 171 files readable, 4 matches

[20565] doi:10.17912/micropub.biology.001477 [paper, repository]

Two K2P Channels, TWK-46 and TWK-26 do not affect <i>C. elegans</i> Egg-Laying Behavior.

Journal: microPublication biology

Authors' code: lichen199701/estimate-of-egg-laying-time-constants (no license)

Status: code verified, 16 files readable

[20566] doi:10.3389/fphar.2025.1485340 [paper]

Therapeutic effects of traditional Chinese medicine Hua-Feng-Dan in a rat model of ischemic stroke involve renormalization of gut microbiota.

Journal: Frontiers in pharmacology

Status: data only

[20567] doi:10.3390/brainsci15020124 [paper, repository]

CLTNet: A Hybrid Deep Learning Model for Motor Imagery Classification.

Journal: Brain sciences

Authors' code: ctwei-wed/CLTNet (no license)

Status: code verified

[20568] doi:10.3390/diagnostics15030300 [paper, data]

Decoding Pain: A Comprehensive Review of Computational Intelligence Methods in Electroencephalography-Based Brain-Computer Interfaces.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[20569] doi:10.3758/s13415-024-01262-0 [paper, repository]

Individual differences in intolerance of uncertainty is primarily linked to the structure of inferior frontal regions.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF bmp9r (no license)

Status: code verified, 2 files readable, 10 matches

[20570] doi:10.7554/elife.103504 [paper, repository]

Operation of spinal sensorimotor circuits controlling phase durations during tied-belt and split-belt locomotion after a lateral thoracic hemisection.

Journal: eLife

Authors' code: RybakLab/nsm (GPL-3.0)

Status: code verified, 179 files readable

Sunday, 26 January 2025 (10 papers)

[20571] doi:10.1016/j.bas.2025.104187 [paper, repository]

Intraoperative classification of CNS lymphoma and glioblastoma by AI-based analysis of Stimulated Raman Histology (SRH).

Journal: Brain & spine

Authors' code: pierrescheffler/srh_lymphoma (LGPL-2.1)

Status: code verified, 182 files readable

[20572] doi:10.1016/j.jare.2025.01.038 [paper, data]

Actl6a regulates autophagy via Sox2-dependent Atg5 and Atg7 expression to inhibit apoptosis in spinal cord injury.

Journal: Journal of advanced research

Status: data only, 2 datasets cited

[20573] doi:10.1016/j.xpro.2025.103601 [paper]

Protocol for recording physiological signals from the human cerebellum using electroencephalography.

Journal: STAR protocols

Status: code on request

[20574] doi:10.1038/s41419-025-07363-z [paper, data]

Overexpression of miR-124 enhances the therapeutic benefit of TMZ treatment in the orthotopic GBM mice model by inhibition of DNA damage repair.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[20575] doi:10.1038/s41746-025-01454-z [paper, repository]

A multicenter study of neurofibromatosis type 1 utilizing deep learning for whole body tumor identification.

Journal: NPJ digital medicine

Authors' code: Licht001/MRI-based-one-step-whole-body-tumor-identification-deep-learning-model (no license)

Status: code verified, 5 files readable

[20576] doi:10.1038/s41746-025-01463-y [paper]

Machine learning approach for noninvasive intracranial pressure estimation using pulsatile cranial expansion waveforms.

Journal: NPJ digital medicine

Status: code on request

[20577] doi:10.1038/s42003-025-07516-y [paper, repository]

Human response times are governed by dual anticipatory processes with distinct neural signatures.

Journal: Communications biology

Authors' code: ashwinramayya/code_RamaEtal_AntReact (no license)

Status: code verified, 17 files readable, 11 matches

[20578] doi:10.1186/s41927-024-00448-w [paper, data]

Altered medial temporal lobe subregion volumes in systemic lupus erythematosus patients with neuropsychiatric symptoms.

Journal: BMC rheumatology

Status: data only, 3 datasets cited

[20579] doi:10.3390/ijms26031062 [paper, repository]

Network Diffusion-Constrained Variational Generative Models for Investigating the Molecular Dynamics of Brain Connectomes Under Neurodegeneration.

Journal: International journal of molecular sciences

Authors' code: pathology-dynamics (no license)

Status: code verified

[20580] doi:10.3390/life15020182 [paper, data]

Effects of Repetitive Transcranial Magnetic Stimulation Applied over the Primary Motor Cortex on the Offset Analgesia Phenomenon.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 25 January 2025 (12 papers)

[20581] doi:10.1016/j.isci.2025.111889 [paper, repository]

The role of memory in affirming-the-consequent fallacy.

Journal: iScience

Authors' code: yokohiguchi/affirming_the_consequent (no license)

Status: code verified, 93 files readable

[20582] doi:10.1016/j.isci.2025.111893 [paper]

Imaging lipid rafts reveals the principle of ApoE4-induced Aβ upregulation in human neurons.

Journal: iScience

Status: code on request

[20583] doi:10.1016/j.jpsychires.2025.01.045 [paper, data]

Hypothalamic resting-state functional connectivity and self-evaluated aggression in young adults.

Journal: Journal of psychiatric research

Status: data only, 1 dataset cited

[20584] doi:10.1021/acsmedchemlett.4c00579 [paper, data]

Development of the Pyrido[2,3-<i>d</i>]pyrimidin-7(8<i>H</i>)-one Scaffold toward Potent and Selective NUAK1 Inhibitors.

Journal: ACS medicinal chemistry letters

Status: data only, 2 datasets cited

[20585] doi:10.1038/s41398-025-03243-4 [paper, repository]

Systematic dissection of pleiotropic loci and critical regulons in excitatory neurons and microglia relevant to neuropsychiatric and ocular diseases.

Journal: Translational psychiatry

Authors' code: mayunlong89/Brain_eye_comorbidity (no license), mayunlong89/ctDRTF (no license)

Status: code verified, 34 files readable, 12 matches

[20586] doi:10.1038/s41598-024-83624-9 [paper]

Poor fixation stability does not account for motion perception deficits in amblyopia.

Journal: Scientific reports

Status: code on request

[20587] doi:10.1038/s41598-025-85858-7 [paper, repository]

Ultra high density imaging arrays in diffuse optical tomography for human brain mapping improve image quality and decoding performance.

Journal: Scientific reports

Authors' code: nitrc.org/projects/neurodot (no license), WUSTL-ORL/NeuroDOT_Beta (other)

Status: code verified, 285 files readable, 7 matches

[20588] doi:10.1038/s41598-025-87300-4 [paper, data]

Evaluation of transcriptomic changes after photobiomodulation in spinal cord injury.

Journal: Scientific reports

Status: data only, 2 datasets cited

[20589] doi:10.1038/s41598-025-87803-0 [paper, repository]

Deep learning classification of MGMT status of glioblastomas using multiparametric MRI with a novel domain knowledge augmented mask fusion approach.

Journal: Scientific reports

Authors' code: kaggle.com/competitions/rsna-miccai-brain-tumor-radiogenomic-classification (no license)

Status: dead link

[20590] doi:10.1093/braincomms/fcaf034 [paper, repository]

The genetic landscape and classification of infantile epileptic spasms syndrome requiring surgery due to suspected focal brain malformations.

Journal: Brain communications

Authors' code: broadinstitute/seqr (AGPL-3.0)

Status: code verified, 709 files readable, 1 match

[20591] doi:10.1186/s13148-025-01818-y [paper, repository]

Blood-based epigenome-wide association study and prediction of alcohol consumption.

Journal: Clinical epigenetics

Authors' code: elenabernabeu/methylomics_alcohol (no license)

Status: code verified, 18 files readable, 7 matches

[20592] doi:10.47626/1516-4446-2024-3958 [paper]

Candidate genes related to spiritual mediumship: a whole-exome sequencing analysis of highly gifted mediums.

Journal: Revista brasileira de psiquiatria (Sao Paulo, Brazil : 1999)

Status: code on request

Friday, 24 January 2025 (39 papers, 16 on this page)

[20593] doi:10.1007/s00247-025-06165-x [paper, repository]

Scanner-based real-time three-dimensional brain + body slice-to-volume reconstruction for T2-weighted 0.55-T low-field fetal magnetic resonance imaging.

Journal: Pediatric radiology

Authors' code: SVRTK/auto-proc-svrtk (GPL-3.0), gadgetron/gadgetron (MIT), hub.docker.com/r/fetalsvrtk (no license)

Status: code verified, 1,129 files readable, 4 matches

[20594] doi:10.1007/s12015-025-10842-7 [paper, repository]

Identification of Cell Fate Determining Transcription Factors for Generating Brain Endothelial Cells.

Journal: Stem cell reviews and reports

Authors' code: scvelo.readthedocs.io (no license)

Status: code verified

[20595] doi:10.1016/j.omtm.2025.101420 [paper]

Intracranial AAV administration dose-dependently recruits B cells to inhibit the AAV redosing.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[20596] doi:10.1038/s41398-025-03226-5 [paper, repository]

Individualized gray matter morphological abnormalities unveil two neuroanatomical obsessive-compulsive disorder subtypes.

Journal: Translational psychiatry

Authors' code: gaussianprocess.org/gpml/code (no license), kaladharprajapati/dominance_analysis (MIT)

Status: code verified, 7 files readable

[20597] doi:10.1038/s41398-025-03240-7 [paper, data]

Deficiency of the palmitoyl acyltransferase ZDHHC7 modulates depression-like behaviour in female mice after a mild chronic stress paradigm.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[20598] doi:10.1038/s41467-024-55459-5 [paper, repository]

Network structure influences the strength of learned neural representations.

Journal: Nature communications

Authors' code: OSF sdwe3 (no license), ariekahn/graph-learning-code (no license)

Status: code verified, 125 files readable, 12 matches

[20599] doi:10.1038/s41467-025-56328-5 [paper, data]

Liver-innervating vagal sensory neurons are indispensable for the development of hepatic steatosis and anxiety-like behavior in diet-induced obese mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[20600] doi:10.1038/s41597-025-04432-y [paper, repository]

Single-cell chromatin accessibility landscape profiling reveals the diversity of epigenetic regulation in the rat nervous system.

Journal: Scientific data

Authors' code: figshare 26056897 (CC-BY-4.0)

Status: code verified, 6 files readable, 19 matches

[20601] doi:10.1038/s42003-024-07390-0 [paper, repository]

Unveiling the functional connectivity of astrocytic networks with AstroNet, a graph reconstruction algorithm coupled to image processing.

Journal: Communications biology

Authors' code: bionewmetrics.org (no license), Zenodo 13889962 (CC-BY-4.0), louzonca/NetConstruct (CC0-1.0)

Status: code verified, 16 files readable, 9 matches

[20602] doi:10.1073/pnas.2404558122 [paper, data]

Lateral olivocochlear neurons modulate cochlear responses to noise exposure.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[20603] doi:10.1073/pnas.2407540122 [paper, repository]

Representational geometry explains puzzling error distributions in behavioral tasks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.5061/dryad.hx3ffbgq9 (no license)

Status: code verified

[20604] doi:10.1073/pnas.2413965122 [paper, data]

Co-option of mitochondrial nucleic acid-sensing pathways by HSV-1 UL12.5 for reactivation from latent infection.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 6 datasets cited

[20605] doi:10.1093/iob/obaf002 [paper, data]

Peptidergic Modulation of the Lobster Cardiac System Has Opposing Action on Neurons and Muscles.

Journal: Integrative organismal biology (Oxford, England)

Status: data only, 1 dataset cited

[20606] doi:10.1111/febs.17408 [paper, data]

Transcriptome-wide alternative mRNA splicing analysis reveals post-transcriptional regulation of neuronal differentiation.

Journal: The FEBS journal

Status: data only, 1 dataset cited

[20607] doi:10.1111/opo.13454 [paper, repository]

Can fundus features tell us something about 3D eye shape?

Journal: Ophthalmic & physiological optics : the journal of the British College of Ophthalmic Opticians (Optometrists)

Authors' code: fyii200/3DeyeShapeRefractiveError (no license)

Status: code verified, 12 files readable, 5 matches

[20608] doi:10.1117/1.jbo.30.1.010501 [paper]

Quantitative assessment of the generalizability of a brain tumor Raman spectroscopy machine learning model to various tumor types including astrocytoma and oligodendroglioma.

Journal: Journal of biomedical optics

Status: code on request

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